Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29833.t1 | XP_013460874.1 | 97.2 | 181 | 5 | 0 | 1 | 181 | 162 | 342 | 8.40E-95 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29833.t1 | Q8LBV4 | 75.0 | 180 | 44 | 1 | 2 | 180 | 175 | 354 | 1.3e-75 | 283.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29833.t1 | A0A072V0M9 | 97.2 | 181 | 5 | 0 | 1 | 181 | 162 | 342 | 6.1e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene29833 | 0.831769 | 1.38E-55 | -1.69E-46 |
| MS.gene049356 | MS.gene29833 | 0.807426 | 5.08E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene29833 | 0.804621 | 1.98E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene29833 | 0.840082 | 1.08E-57 | -1.69E-46 |
| MS.gene049794 | MS.gene29833 | 0.80698 | 6.32E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene29833 | 0.826667 | 2.39E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene29833 | 0.807381 | 5.20E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene29833 | 0.846199 | 2.52E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene29833 | 0.838588 | 2.63E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene29833 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene050926 | MS.gene29833 | -0.800279 | 1.55E-48 | -1.69E-46 |
| MS.gene050950 | MS.gene29833 | 0.823901 | 1.08E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene29833 | 0.84603 | 2.81E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene29833 | 0.829798 | 4.21E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene29833 | 0.827099 | 1.89E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene29833 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene051999 | MS.gene29833 | 0.839565 | 1.47E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene29833 | 0.813007 | 3.18E-51 | -1.69E-46 |
| MS.gene052346 | MS.gene29833 | 0.829236 | 5.76E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene29833 | 0.82664 | 2.43E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene29833 | 0.840961 | 6.34E-58 | -1.69E-46 |
| MS.gene052481 | MS.gene29833 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene29833 | 0.836645 | 8.29E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene29833 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene29833 | 0.849041 | 4.17E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene29833 | 0.863562 | 2.28E-64 | -1.69E-46 |
| MS.gene052823 | MS.gene29833 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene29833 | 0.885343 | 8.83E-72 | -1.69E-46 |
| MS.gene053207 | MS.gene29833 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene29833 | 0.802966 | 4.37E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene29833 | 0.813356 | 2.67E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene29833 | 0.81425 | 1.70E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene29833 | 0.815363 | 9.60E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene29833 | 0.820123 | 8.10E-53 | -1.69E-46 |
| MS.gene053873 | MS.gene29833 | 0.833741 | 4.48E-56 | -1.69E-46 |
| MS.gene053912 | MS.gene29833 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene29833 | 0.804532 | 2.06E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene29833 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene29833 | 0.854878 | 9.18E-62 | -1.69E-46 |
| MS.gene05505 | MS.gene29833 | 0.823189 | 1.58E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene29833 | 0.807318 | 5.36E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene29833 | 0.85996 | 2.88E-63 | -1.69E-46 |
| MS.gene055741 | MS.gene29833 | 0.813685 | 2.26E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene29833 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene29833 | 0.825882 | 3.68E-54 | -1.69E-46 |
| MS.gene055911 | MS.gene29833 | 0.831687 | 1.45E-55 | -1.69E-46 |
| MS.gene05594 | MS.gene29833 | 0.824474 | 7.91E-54 | -1.69E-46 |
| MS.gene05602 | MS.gene29833 | 0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene29833 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene056346 | MS.gene29833 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene29833 | 0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene29833 | 0.823869 | 1.10E-53 | -1.69E-46 |
| MS.gene057048 | MS.gene29833 | 0.829125 | 6.13E-55 | -1.69E-46 |
| MS.gene057076 | MS.gene29833 | 0.818279 | 2.13E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene29833 | 0.838714 | 2.44E-57 | -1.69E-46 |
| MS.gene057146 | MS.gene29833 | 0.808722 | 2.69E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene29833 | 0.812836 | 3.47E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene29833 | 0.85053 | 1.60E-60 | -1.69E-46 |
| MS.gene057823 | MS.gene29833 | 0.860152 | 2.52E-63 | -1.69E-46 |
| MS.gene057825 | MS.gene29833 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene057826 | MS.gene29833 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene057845 | MS.gene29833 | 0.835406 | 1.71E-56 | -1.69E-46 |
| MS.gene057888 | MS.gene29833 | 0.803625 | 3.19E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene29833 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene29833 | 0.809055 | 2.29E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene29833 | 0.816594 | 5.10E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene29833 | 0.82537 | 4.87E-54 | -1.69E-46 |
| MS.gene058444 | MS.gene29833 | 0.828088 | 1.09E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene29833 | 0.826811 | 2.21E-54 | -1.69E-46 |
| MS.gene05883 | MS.gene29833 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene05886 | MS.gene29833 | 0.827993 | 1.15E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene29833 | 0.852492 | 4.45E-61 | -1.69E-46 |
| MS.gene059368 | MS.gene29833 | 0.814243 | 1.70E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene29833 | 0.833785 | 4.37E-56 | -1.69E-46 |
| MS.gene059499 | MS.gene29833 | 0.835939 | 1.25E-56 | -1.69E-46 |
| MS.gene059502 | MS.gene29833 | 0.821693 | 3.52E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene29833 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene29833 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene060485 | MS.gene29833 | 0.835875 | 1.30E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene29833 | 0.838589 | 2.63E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene29833 | 0.81721 | 3.71E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29833.t1 | MTR_3g074250 | 97.238 | 181 | 5 | 0 | 1 | 181 | 162 | 342 | 8.37e-129 | 365 |
| MS.gene29833.t1 | MTR_2g450530 | 54.494 | 178 | 75 | 2 | 4 | 180 | 105 | 277 | 1.67e-65 | 202 |
| MS.gene29833.t1 | MTR_2g450530 | 54.494 | 178 | 75 | 2 | 4 | 180 | 170 | 342 | 1.94e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29833.t1 | AT1G78140 | 75.000 | 180 | 44 | 1 | 2 | 180 | 175 | 354 | 3.90e-99 | 290 |
| MS.gene29833.t1 | AT2G41040 | 50.829 | 181 | 78 | 3 | 4 | 180 | 179 | 352 | 5.97e-58 | 185 |
Find 34 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAATTTGTGTACTCTTT+TGG | 0.188572 | 3.4:+72842871 | None:intergenic |
| TAGAATATAAATCAAGTATC+AGG | 0.201212 | 3.4:-72841473 | MS.gene29833:CDS |
| TCTGCTGCAAAGCCGAAATA+AGG | 0.286504 | 3.4:-72841350 | None:intergenic |
| AGGAAACTCAAACCTTATTT+CGG | 0.331192 | 3.4:+72841338 | None:intergenic |
| GGTTTCCTAAAACCAGTATT+AGG | 0.339433 | 3.4:-72843042 | MS.gene29833:CDS |
| ATGATATTTCCACCTAATAC+TGG | 0.344800 | 3.4:+72843030 | None:intergenic |
| GGATTTAAATGCATTAGAAA+TGG | 0.364474 | 3.4:-72841389 | MS.gene29833:CDS |
| TGTTGCAACCACCTACATAC+TGG | 0.395943 | 3.4:-72842050 | MS.gene29833:CDS |
| GATTTAAATGCATTAGAAAT+GGG | 0.440850 | 3.4:-72841388 | MS.gene29833:CDS |
| TCTCTGCAAGGCGTGTGGGC+TGG | 0.459953 | 3.4:-72841414 | MS.gene29833:CDS |
| ATGTTATGAATTTGTTCAGC+AGG | 0.472552 | 3.4:-72842905 | MS.gene29833:CDS |
| AAGTTCACGTTCAGAGAGAA+AGG | 0.474732 | 3.4:+72841442 | None:intergenic |
| TGCAAGGCGTGTGGGCTGGT+CGG | 0.485394 | 3.4:-72841410 | MS.gene29833:CDS |
| ATCGATGCTAGTTGTGGAAG+TGG | 0.499787 | 3.4:-72843009 | MS.gene29833:CDS |
| CAGGAGCAGCTCTTCACTGT+TGG | 0.508797 | 3.4:-72842662 | MS.gene29833:CDS |
| GAAGCTCTCTGCAAGGCGTG+TGG | 0.509317 | 3.4:-72841419 | MS.gene29833:CDS |
| GCAGCAGAAATCATCACAAA+AGG | 0.517241 | 3.4:+72841365 | None:intergenic |
| TCCTGCATGCACAGCATCGA+TGG | 0.526627 | 3.4:+72842680 | None:intergenic |
| TCCATCGATGCTGTGCATGC+AGG | 0.527473 | 3.4:-72842681 | MS.gene29833:CDS |
| AAGCTCTCTGCAAGGCGTGT+GGG | 0.541226 | 3.4:-72841418 | MS.gene29833:CDS |
| AGAATATAAATCAAGTATCA+GGG | 0.544688 | 3.4:-72841472 | MS.gene29833:CDS |
| GCAACCACCTACATACTGGA+TGG | 0.544849 | 3.4:-72842046 | MS.gene29833:CDS |
| CCGCAGTTTGAACAGATGAA+GGG | 0.551772 | 3.4:-72843063 | None:intergenic |
| TCGATGGAACTTGAAACAAA+AGG | 0.560574 | 3.4:+72842696 | None:intergenic |
| TTCCTAAAACCAGTATTAGG+TGG | 0.565845 | 3.4:-72843039 | MS.gene29833:CDS |
| GTTGCAACAAAGACACCTCC+AGG | 0.580734 | 3.4:+72842064 | None:intergenic |
| AAAAGGCCCATCCAGTATGT+AGG | 0.581231 | 3.4:+72842039 | None:intergenic |
| AATATCATCGATGCTAGTTG+TGG | 0.584800 | 3.4:-72843015 | MS.gene29833:CDS |
| CTTACAGCTGCTGATGGTGA+AGG | 0.590848 | 3.4:+72842639 | None:intergenic |
| CAACCACCTACATACTGGAT+GGG | 0.592989 | 3.4:-72842045 | MS.gene29833:CDS |
| TATTCACTTACAGCTGCTGA+TGG | 0.608738 | 3.4:+72842633 | None:intergenic |
| TGAACTTGAAGCTCTCTGCA+AGG | 0.624469 | 3.4:-72841426 | MS.gene29833:CDS |
| AGGCCCATCCAGTATGTAGG+TGG | 0.662241 | 3.4:+72842042 | None:intergenic |
| ACTACTCAGAGAATATGTTG+AGG | 0.724151 | 3.4:-72842930 | MS.gene29833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCATTAATTAGTATT+TGG | - | chr3.4:72841786-72841805 | MS.gene29833:intron | 10.0% |
| !! | TTCAAAAGATATTTAAAAAA+GGG | + | chr3.4:72842036-72842055 | None:intergenic | 10.0% |
| !! | TTTCAAAAGATATTTAAAAA+AGG | + | chr3.4:72842037-72842056 | None:intergenic | 10.0% |
| !!! | TTTTTAAATATCTTTTGAAA+TGG | - | chr3.4:72842037-72842056 | MS.gene29833:CDS | 10.0% |
| !!! | TTTGAAATATAAACTACTTA+TGG | - | chr3.4:72842161-72842180 | MS.gene29833:intron | 15.0% |
| !! | AGAATATAAATCAAGTATCA+GGG | - | chr3.4:72842928-72842947 | MS.gene29833:CDS | 20.0% |
| !! | GATTTAAATGCATTAGAAAT+GGG | - | chr3.4:72843012-72843031 | MS.gene29833:CDS | 20.0% |
| !! | TAGAATATAAATCAAGTATC+AGG | - | chr3.4:72842927-72842946 | MS.gene29833:CDS | 20.0% |
| !!! | AAATATCTTTTGAAATGGTT+TGG | - | chr3.4:72842042-72842061 | MS.gene29833:CDS | 20.0% |
| !!! | AATATTCTCATGTATTTTCA+TGG | + | chr3.4:72842578-72842597 | None:intergenic | 20.0% |
| !!! | ATATTCTCATGTATTTTCAT+GGG | + | chr3.4:72842577-72842596 | None:intergenic | 20.0% |
| !!! | GTAAATATCTTTTGAAATGA+GGG | - | chr3.4:72841841-72841860 | MS.gene29833:intron | 20.0% |
| !!! | TAAATATCTTTTGAAATGAG+GGG | - | chr3.4:72841842-72841861 | MS.gene29833:intron | 20.0% |
| !!! | TGTAAATATCTTTTGAAATG+AGG | - | chr3.4:72841840-72841859 | MS.gene29833:intron | 20.0% |
| !!! | TTCTAAAATGACAAACAAAT+TGG | + | chr3.4:72842912-72842931 | None:intergenic | 20.0% |
| ! | AATAGTTCCATTAAAACATC+GGG | + | chr3.4:72841590-72841609 | None:intergenic | 25.0% |
| ! | ATTCATTATCGTTAAAAGCA+CGG | + | chr3.4:72842139-72842158 | None:intergenic | 25.0% |
| ! | CTATATGTCAAACATGAAAA+GGG | - | chr3.4:72842827-72842846 | MS.gene29833:intron | 25.0% |
| ! | GAATAGTTCCATTAAAACAT+CGG | + | chr3.4:72841591-72841610 | None:intergenic | 25.0% |
| ! | GGATTTAAATGCATTAGAAA+TGG | - | chr3.4:72843011-72843030 | MS.gene29833:CDS | 25.0% |
| ! | GTAACTTATCCTAAATGTTA+CGG | + | chr3.4:72842194-72842213 | None:intergenic | 25.0% |
| ! | GTATAACTTTGAATCTGAAT+TGG | + | chr3.4:72842806-72842825 | None:intergenic | 25.0% |
| ! | TATAAAACTTGTGCCATATT+TGG | - | chr3.4:72842418-72842437 | MS.gene29833:intron | 25.0% |
| ! | TCAAGATTATTTGCAAAAAG+TGG | - | chr3.4:72841421-72841440 | MS.gene29833:CDS | 25.0% |
| ! | TGGTACAAATAATTTAACCA+TGG | - | chr3.4:72842062-72842081 | MS.gene29833:CDS | 25.0% |
| !! | ATTTTCATGGGTATGTAAAA+TGG | + | chr3.4:72842565-72842584 | None:intergenic | 25.0% |
| !! | CTTTTCATGTTTGACATATA+GGG | + | chr3.4:72842828-72842847 | None:intergenic | 25.0% |
| !! | TAGAAATTTGTGTACTCTTT+TGG | + | chr3.4:72841532-72841551 | None:intergenic | 25.0% |
| !! | TCATAAACATTTCTTTTGCT+AGG | - | chr3.4:72841645-72841664 | MS.gene29833:intron | 25.0% |
| !!! | AAAAAGTGGACTTTTTTCTT+TGG | - | chr3.4:72841435-72841454 | MS.gene29833:CDS | 25.0% |
| !!! | TCATATCAAGTTTTGAATAG+TGG | - | chr3.4:72842886-72842905 | MS.gene29833:CDS | 25.0% |
| AACTTACTGAGTTTATCTAC+TGG | + | chr3.4:72842494-72842513 | None:intergenic | 30.0% | |
| ATATTTAAAAAAGGGCAACC+CGG | + | chr3.4:72842028-72842047 | None:intergenic | 30.0% | |
| ATGATATTTCCACCTAATAC+TGG | + | chr3.4:72841373-72841392 | None:intergenic | 30.0% | |
| CCTATATGTCAAACATGAAA+AGG | - | chr3.4:72842826-72842845 | MS.gene29833:intron | 30.0% | |
| TATTACATACCAAGATTGTG+AGG | - | chr3.4:72842740-72842759 | MS.gene29833:intron | 30.0% | |
| TGACGCAATGTACTTAAAAA+CGG | + | chr3.4:72842396-72842415 | None:intergenic | 30.0% | |
| ! | ACAATACTGCATAAACCTTT+TGG | + | chr3.4:72842092-72842111 | None:intergenic | 30.0% |
| ! | ATGTTATGAATTTGTTCAGC+AGG | - | chr3.4:72841495-72841514 | MS.gene29833:intron | 30.0% |
| ! | CAATACTGCATAAACCTTTT+GGG | + | chr3.4:72842091-72842110 | None:intergenic | 30.0% |
| ! | CCTTTTCATGTTTGACATAT+AGG | + | chr3.4:72842829-72842848 | None:intergenic | 30.0% |
| ! | TCAATTTAGTTTCTCATCGT+AGG | - | chr3.4:72842628-72842647 | MS.gene29833:intron | 30.0% |
| !! | TTTTGAACCCGATGTTTTAA+TGG | - | chr3.4:72841580-72841599 | MS.gene29833:intron | 30.0% |
| AAAGACAGGTGATATCAGTT+TGG | + | chr3.4:72842766-72842785 | None:intergenic | 35.0% | |
| AATATCATCGATGCTAGTTG+TGG | - | chr3.4:72841385-72841404 | MS.gene29833:CDS | 35.0% | |
| ACTACTCAGAGAATATGTTG+AGG | - | chr3.4:72841470-72841489 | MS.gene29833:CDS | 35.0% | |
| AGGTTTATGCAGTATTGTGT+TGG | - | chr3.4:72842094-72842113 | MS.gene29833:CDS | 35.0% | |
| AGTAAGTGAGACAAGCTAAA+CGG | + | chr3.4:72842256-72842275 | None:intergenic | 35.0% | |
| CTCTTGTGTAAAACAAGGTA+AGG | - | chr3.4:72841936-72841955 | MS.gene29833:intron | 35.0% | |
| GGAAAGTTACCGTAACATTT+AGG | - | chr3.4:72842182-72842201 | MS.gene29833:intron | 35.0% | |
| GGTTTCCTAAAACCAGTATT+AGG | - | chr3.4:72841358-72841377 | MS.gene29833:CDS | 35.0% | |
| TAACTTTGTCCTTCAGCTAA+AGG | - | chr3.4:72842661-72842680 | MS.gene29833:CDS | 35.0% | |
| TCAGGTCATGGAAATTATAG+AGG | + | chr3.4:72842281-72842300 | None:intergenic | 35.0% | |
| TCGATGGAACTTGAAACAAA+AGG | + | chr3.4:72841707-72841726 | None:intergenic | 35.0% | |
| TGTACTTAAAAACGGAACAG+CGG | + | chr3.4:72842388-72842407 | None:intergenic | 35.0% | |
| TTCCTAAAACCAGTATTAGG+TGG | - | chr3.4:72841361-72841380 | MS.gene29833:CDS | 35.0% | |
| TTTAACCATGGTATCCCAAA+AGG | - | chr3.4:72842074-72842093 | MS.gene29833:CDS | 35.0% | |
| ! | TTTTGCTAGGAACTTCATCT+TGG | - | chr3.4:72841658-72841677 | MS.gene29833:intron | 35.0% |
| !! | GTGTTATTTCCTTTAGCTGA+AGG | + | chr3.4:72842673-72842692 | None:intergenic | 35.0% |
| !!! | ATAAACCTTTTGGGATACCA+TGG | + | chr3.4:72842082-72842101 | None:intergenic | 35.0% |
| !!! | CTTACCTTGTTTTACACAAG+AGG | + | chr3.4:72841938-72841957 | None:intergenic | 35.0% |
| !!! | GTTTTTAAGTACATTGCGTC+AGG | - | chr3.4:72842395-72842414 | MS.gene29833:intron | 35.0% |
| !!! | TGGACTTTTTTCTTTGGTTG+TGG | - | chr3.4:72841441-72841460 | MS.gene29833:CDS | 35.0% |
| !!! | TTCCACCTAATACTGGTTTT+AGG | + | chr3.4:72841366-72841385 | None:intergenic | 35.0% |
| AAAAACGGAACAGCGGTAAA+AGG | + | chr3.4:72842381-72842400 | None:intergenic | 40.0% | |
| AAGTTCACGTTCAGAGAGAA+AGG | + | chr3.4:72842961-72842980 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+AGG | - | chr3.4:72841931-72841950 | MS.gene29833:intron | 40.0% | |
| ACCTGTCTTTCAAGCAACAA+AGG | - | chr3.4:72842776-72842795 | MS.gene29833:intron | 40.0% | |
| CCACGAATGTGAGACAAAAT+TGG | + | chr3.4:72842695-72842714 | None:intergenic | 40.0% | |
| CCTGTCTTTCAAGCAACAAA+GGG | - | chr3.4:72842777-72842796 | MS.gene29833:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.4:72841962-72841981 | MS.gene29833:intron | 40.0% | |
| GCAGCAGAAATCATCACAAA+AGG | + | chr3.4:72843038-72843057 | None:intergenic | 40.0% | |
| GGCTCATTTGTCTAATAGCT+TGG | + | chr3.4:72842544-72842563 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr3.4:72841887-72841906 | MS.gene29833:intron | 40.0% | |
| TATTCACTTACAGCTGCTGA+TGG | + | chr3.4:72841770-72841789 | None:intergenic | 40.0% | |
| TCCAACAAGCATGCCAAATA+TGG | + | chr3.4:72842434-72842453 | None:intergenic | 40.0% | |
| TTTCAGCTACCTGCAATATC+AGG | + | chr3.4:72842299-72842318 | None:intergenic | 40.0% | |
| TTTCCATGACCTGATATTGC+AGG | - | chr3.4:72842287-72842306 | MS.gene29833:intron | 40.0% | |
| ! | ATAAGTCGCATTTTACGACC+TGG | - | chr3.4:72842318-72842337 | MS.gene29833:intron | 40.0% |
| ! | CCAATTTTGTCTCACATTCG+TGG | - | chr3.4:72842692-72842711 | MS.gene29833:CDS | 40.0% |
| ! | TTTGAAATGAGGGGTAACCT+TGG | - | chr3.4:72841851-72841870 | MS.gene29833:intron | 40.0% |
| ! | TTTTTCTTTGGTTGTGGCTC+TGG | - | chr3.4:72841447-72841466 | MS.gene29833:CDS | 40.0% |
| AAAAGGCCCATCCAGTATGT+AGG | + | chr3.4:72842364-72842383 | None:intergenic | 45.0% | |
| AGCTCTACTTACTCTCACTC+AGG | + | chr3.4:72842465-72842484 | None:intergenic | 45.0% | |
| ATCGATGCTAGTTGTGGAAG+TGG | - | chr3.4:72841391-72841410 | MS.gene29833:CDS | 45.0% | |
| CAACCACCTACATACTGGAT+GGG | - | chr3.4:72842355-72842374 | MS.gene29833:intron | 45.0% | |
| CTACCTGCAATATCAGGTCA+TGG | + | chr3.4:72842293-72842312 | None:intergenic | 45.0% | |
| GCCATATTTGGCATGCTTGT+TGG | - | chr3.4:72842430-72842449 | MS.gene29833:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3.4:72841961-72841980 | MS.gene29833:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr3.4:72841958-72841977 | MS.gene29833:intron | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr3.4:72841893-72841912 | MS.gene29833:intron | 45.0% | |
| TCAGTTTGGCCTCACAATCT+TGG | + | chr3.4:72842752-72842771 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr3.4:72841894-72841913 | MS.gene29833:intron | 45.0% | |
| TGAACTTGAAGCTCTCTGCA+AGG | - | chr3.4:72842974-72842993 | MS.gene29833:CDS | 45.0% | |
| TGTTGCAACCACCTACATAC+TGG | - | chr3.4:72842350-72842369 | MS.gene29833:intron | 45.0% | |
| ! | CCCTTTGTTGCTTGAAAGAC+AGG | + | chr3.4:72842780-72842799 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3.4:72841927-72841946 | None:intergenic | 45.0% |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3.4:72841871-72841890 | None:intergenic | 50.0% | |
| GCAACCACCTACATACTGGA+TGG | - | chr3.4:72842354-72842373 | MS.gene29833:intron | 50.0% | |
| GTTGCAACAAAGACACCTCC+AGG | + | chr3.4:72842339-72842358 | None:intergenic | 50.0% | |
| ! | AGTCGCATTTTACGACCTGG+AGG | - | chr3.4:72842321-72842340 | MS.gene29833:intron | 50.0% |
| ! | CTTACAGCTGCTGATGGTGA+AGG | + | chr3.4:72841764-72841783 | None:intergenic | 50.0% |
| AAGCTCTCTGCAAGGCGTGT+GGG | - | chr3.4:72842982-72843001 | MS.gene29833:CDS | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3.4:72841906-72841925 | MS.gene29833:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr3.4:72842002-72842021 | None:intergenic | 55.0% | |
| AGGCCCATCCAGTATGTAGG+TGG | + | chr3.4:72842361-72842380 | None:intergenic | 55.0% | |
| CAGGAGCAGCTCTTCACTGT+TGG | - | chr3.4:72841738-72841757 | MS.gene29833:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr3.4:72842001-72842020 | None:intergenic | 55.0% | |
| TCCATCGATGCTGTGCATGC+AGG | - | chr3.4:72841719-72841738 | MS.gene29833:intron | 55.0% | |
| ! | TCCTGCATGCACAGCATCGA+TGG | + | chr3.4:72841723-72841742 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3.4:72841860-72841879 | MS.gene29833:intron | 60.0% | |
| CATATGCAGGGTGCGGGAAG+GGG | + | chr3.4:72841989-72842008 | None:intergenic | 60.0% | |
| CTTCCCGCACCCTGCATATG+CGG | - | chr3.4:72841989-72842008 | MS.gene29833:intron | 60.0% | |
| GAAGCTCTCTGCAAGGCGTG+TGG | - | chr3.4:72842981-72843000 | MS.gene29833:CDS | 60.0% | |
| GCATATGCAGGGTGCGGGAA+GGG | + | chr3.4:72841990-72842009 | None:intergenic | 60.0% | |
| TTCCCGCACCCTGCATATGC+GGG | - | chr3.4:72841990-72842009 | MS.gene29833:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr3.4:72842006-72842025 | MS.gene29833:CDS | 60.0% |
| CGCATATGCAGGGTGCGGGA+AGG | + | chr3.4:72841991-72842010 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3.4:72841976-72841995 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTGC+GGG | + | chr3.4:72841995-72842014 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTG+CGG | + | chr3.4:72841996-72842015 | None:intergenic | 65.0% | |
| TCTCTGCAAGGCGTGTGGGC+TGG | - | chr3.4:72842986-72843005 | MS.gene29833:CDS | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr3.4:72842007-72842026 | MS.gene29833:CDS | 65.0% |
| !! | TGCAAGGCGTGTGGGCTGGT+CGG | - | chr3.4:72842990-72843009 | MS.gene29833:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72841352 | 72843070 | 72841352 | ID=MS.gene29833 |
| chr3.4 | mRNA | 72841352 | 72843070 | 72841352 | ID=MS.gene29833.t1;Parent=MS.gene29833 |
| chr3.4 | exon | 72842886 | 72843070 | 72842886 | ID=MS.gene29833.t1.exon1;Parent=MS.gene29833.t1 |
| chr3.4 | CDS | 72842886 | 72843070 | 72842886 | ID=cds.MS.gene29833.t1;Parent=MS.gene29833.t1 |
| chr3.4 | exon | 72842644 | 72842755 | 72842644 | ID=MS.gene29833.t1.exon2;Parent=MS.gene29833.t1 |
| chr3.4 | CDS | 72842644 | 72842755 | 72842644 | ID=cds.MS.gene29833.t1;Parent=MS.gene29833.t1 |
| chr3.4 | exon | 72842006 | 72842113 | 72842006 | ID=MS.gene29833.t1.exon3;Parent=MS.gene29833.t1 |
| chr3.4 | CDS | 72842006 | 72842113 | 72842006 | ID=cds.MS.gene29833.t1;Parent=MS.gene29833.t1 |
| chr3.4 | exon | 72841352 | 72841492 | 72841352 | ID=MS.gene29833.t1.exon4;Parent=MS.gene29833.t1 |
| chr3.4 | CDS | 72841352 | 72841492 | 72841352 | ID=cds.MS.gene29833.t1;Parent=MS.gene29833.t1 |
| Gene Sequence |
| Protein sequence |
