Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052010.t1 | XP_003597525.1 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 5.90E-136 | 493.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052010.t1 | Q96288 | 57.5 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 1.6e-73 | 277.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052010.t1 | G7IHV4 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 4.3e-136 | 493.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene052010.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052010 | MS.gene98727 | 0.938059 | 1.26E-98 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052010.t1 | MTR_2g099010 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 0.0 | 498 |
MS.gene052010.t1 | MTR_2g099010 | 97.531 | 243 | 5 | 1 | 1 | 243 | 1 | 242 | 2.05e-179 | 492 |
MS.gene052010.t1 | MTR_2g099010 | 95.722 | 187 | 8 | 0 | 57 | 243 | 31 | 217 | 1.85e-123 | 350 |
MS.gene052010.t1 | MTR_4g067320 | 69.672 | 244 | 69 | 3 | 1 | 243 | 1 | 240 | 4.44e-123 | 349 |
MS.gene052010.t1 | MTR_4g067320 | 69.262 | 244 | 69 | 4 | 1 | 243 | 1 | 239 | 8.40e-121 | 343 |
MS.gene052010.t1 | MTR_2g073370 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.50e-41 | 144 |
MS.gene052010.t1 | MTR_1g023260 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 9.09e-37 | 130 |
MS.gene052010.t1 | MTR_1g023260 | 41.040 | 173 | 81 | 2 | 1 | 152 | 1 | 173 | 6.42e-35 | 124 |
MS.gene052010.t1 | MTR_3g113070 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 1.13e-34 | 124 |
MS.gene052010.t1 | MTR_3g117320 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 8.26e-34 | 122 |
MS.gene052010.t1 | MTR_4g071200 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.50e-32 | 118 |
MS.gene052010.t1 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.32e-23 | 94.4 |
MS.gene052010.t1 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.51e-23 | 94.0 |
MS.gene052010.t1 | MTR_3g105710 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 2.55e-17 | 79.3 |
MS.gene052010.t1 | MTR_7g018170 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 1.12e-16 | 78.6 |
MS.gene052010.t1 | MTR_7g018170 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 4.61e-11 | 62.4 |
MS.gene052010.t1 | MTR_1g013450 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 3.30e-16 | 76.6 |
MS.gene052010.t1 | MTR_4g128930 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 4.03e-15 | 74.3 |
MS.gene052010.t1 | MTR_7g108150 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 5.31e-13 | 68.2 |
MS.gene052010.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 8.51e-12 | 64.7 |
MS.gene052010.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.15e-11 | 63.5 |
MS.gene052010.t1 | MTR_3g082630 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 7.55e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052010.t1 | AT1G06040 | 57.480 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.84e-94 | 277 |
MS.gene052010.t1 | AT2G31380 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 4.04e-94 | 276 |
MS.gene052010.t1 | AT1G06040 | 63.529 | 170 | 51 | 4 | 1 | 161 | 1 | 168 | 2.71e-68 | 208 |
MS.gene052010.t1 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.12e-40 | 141 |
MS.gene052010.t1 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 2.08e-40 | 141 |
MS.gene052010.t1 | AT4G10240 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.04e-35 | 124 |
MS.gene052010.t1 | AT1G75540 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 3.58e-34 | 125 |
MS.gene052010.t1 | AT4G39070 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.52e-30 | 113 |
MS.gene052010.t1 | AT2G21320 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 2.50e-23 | 93.2 |
MS.gene052010.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.47e-23 | 92.4 |
MS.gene052010.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.47e-23 | 92.4 |
MS.gene052010.t1 | AT5G15850 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 3.60e-17 | 79.7 |
MS.gene052010.t1 | AT2G24790 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.49e-17 | 78.2 |
MS.gene052010.t1 | AT2G24790 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.11e-16 | 76.6 |
MS.gene052010.t1 | AT3G02380 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.22e-15 | 75.5 |
MS.gene052010.t1 | AT5G24930 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.57e-15 | 75.5 |
MS.gene052010.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.03e-15 | 73.6 |
MS.gene052010.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.54e-15 | 72.4 |
MS.gene052010.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.24e-12 | 65.9 |
MS.gene052010.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.36e-12 | 65.9 |
MS.gene052010.t1 | AT1G28050 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.36e-12 | 65.9 |
MS.gene052010.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.16e-11 | 62.0 |
MS.gene052010.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.92e-11 | 61.6 |
Find 45 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2.2:-3855126 | None:intergenic |
TTGGGGTGTTGATGACTTAT+TGG | 0.211633 | 2.2:+3855226 | MS.gene052010:CDS |
GCCTGACTTTACACCTCCTT+GGG | 0.273748 | 2.2:+3855208 | MS.gene052010:CDS |
ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2.2:-3855158 | None:intergenic |
TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2.2:-3855908 | None:intergenic |
AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2.2:-3855859 | None:intergenic |
CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2.2:+3855731 | MS.gene052010:intron |
TTTGGCGCAGTTAGATTTCA+TGG | 0.360694 | 2.2:-3855108 | None:intergenic |
TGATTTGCAGAAAGGCTTCC+TGG | 0.363066 | 2.2:-3855053 | None:intergenic |
TGCCTGACTTTACACCTCCT+TGG | 0.369148 | 2.2:+3855207 | MS.gene052010:CDS |
TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2.2:+3855956 | MS.gene052010:CDS |
TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2.2:-3855839 | None:intergenic |
ACTTGGCATATGTCACATCT+AGG | 0.395238 | 2.2:-3853964 | None:intergenic |
GCACAGCAAATCATTGTTGC+AGG | 0.405281 | 2.2:-3853835 | None:intergenic |
TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2.2:+3855739 | MS.gene052010:CDS |
CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2.2:-3855968 | None:intergenic |
AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2.2:-3855810 | None:intergenic |
TTTCATGGCAACTTGGATAC+CGG | 0.500273 | 2.2:-3855093 | None:intergenic |
AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2.2:-3855194 | None:intergenic |
TACCGGTGGCAAGGAAGCGC+TGG | 0.507223 | 2.2:-3855076 | None:intergenic |
TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2.2:-3855155 | None:intergenic |
TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2.2:-3855882 | None:intergenic |
CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2.2:+3855144 | MS.gene052010:CDS |
AGTTAGATTTCATGGCAACT+TGG | 0.524204 | 2.2:-3855100 | None:intergenic |
AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2.2:-3855061 | None:intergenic |
TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2.2:+3855744 | MS.gene052010:CDS |
CCCCAAGGAGGTGTAAAGTC+AGG | 0.545918 | 2.2:-3855209 | None:intergenic |
TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2.2:-3855741 | None:intergenic |
CACCAGCGCTTCCTTGCCAC+CGG | 0.564595 | 2.2:+3855074 | MS.gene052010:CDS |
AGACGACGAACAAACTCACT+TGG | 0.565694 | 2.2:+3855130 | MS.gene052010:CDS |
GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2.2:+3855757 | MS.gene052010:CDS |
CTTGGCATATGTCACATCTA+GGG | 0.582493 | 2.2:-3853963 | None:intergenic |
ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2.2:+3855758 | MS.gene052010:CDS |
CAACTTGGATACCGGTGGCA+AGG | 0.586081 | 2.2:-3855085 | None:intergenic |
TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2.2:+3855793 | MS.gene052010:CDS |
GACGAATCGATTCATTTACC+AGG | 0.619460 | 2.2:+3855035 | MS.gene052010:CDS |
GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2.2:-3855963 | None:intergenic |
AGCTTGCAAGCAAACATCAG+AGG | 0.630860 | 2.2:+3853911 | MS.gene052010:CDS |
CATGGCAACTTGGATACCGG+TGG | 0.632565 | 2.2:-3855090 | None:intergenic |
GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2.2:-3855830 | None:intergenic |
AATAAGTCATCAACACCCCA+AGG | 0.661072 | 2.2:-3855224 | None:intergenic |
CCTGACTTTACACCTCCTTG+GGG | 0.669620 | 2.2:+3855209 | MS.gene052010:CDS |
AGATAGGGCACTCTTCTGTG+AGG | 0.701688 | 2.2:+3855007 | MS.gene052010:CDS |
AAGTCATCAACACCCCAAGG+AGG | 0.755244 | 2.2:-3855221 | None:intergenic |
AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2.2:+3855754 | MS.gene052010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTCTATAATAAAAGATA+GGG | + | chr2.2:3854467-3854486 | MS.gene052010:intron | 10.0% |
!!! | TTATTTCTATAATAAAAGAT+AGG | + | chr2.2:3854466-3854485 | MS.gene052010:intron | 10.0% |
!! | AAAAAAACAAGAGAAAATTA+AGG | - | chr2.2:3854002-3854021 | None:intergenic | 15.0% |
!!! | ATTTGACTATTTTATCTTTT+AGG | - | chr2.2:3854672-3854691 | None:intergenic | 15.0% |
!!! | TTTGACTATTTTATCTTTTA+GGG | - | chr2.2:3854671-3854690 | None:intergenic | 15.0% |
!! | AAAAGTTATAGTATACTTTC+TGG | + | chr2.2:3854179-3854198 | MS.gene052010:intron | 20.0% |
!! | ACAAAATAAGTAACAGTTAT+AGG | - | chr2.2:3854921-3854940 | None:intergenic | 20.0% |
!! | ATCATGTATCATTAGATAAT+AGG | - | chr2.2:3855631-3855650 | None:intergenic | 20.0% |
!! | ATCTTCATATAGTATAAGAT+AGG | - | chr2.2:3854237-3854256 | None:intergenic | 20.0% |
!! | TGAAATCGAATATTTAACTA+AGG | - | chr2.2:3855352-3855371 | None:intergenic | 20.0% |
!!! | GAGACAAAAAACATTTTATA+AGG | - | chr2.2:3855390-3855409 | None:intergenic | 20.0% |
!!! | TTACAAAACTACATGTTTTT+AGG | - | chr2.2:3855422-3855441 | None:intergenic | 20.0% |
!!! | TTGCAACTTTATTTCATAAT+TGG | + | chr2.2:3855285-3855304 | MS.gene052010:intron | 20.0% |
!!! | TTTTGTTATAATTGAGCTAA+GGG | - | chr2.2:3855598-3855617 | None:intergenic | 20.0% |
! | AATTTGTACGAACTAAAATG+TGG | + | chr2.2:3855440-3855459 | MS.gene052010:intron | 25.0% |
! | ACAAGTTAAAGAGCTTAAAA+AGG | - | chr2.2:3854623-3854642 | None:intergenic | 25.0% |
! | CTTAGCTCAATTATAACAAA+AGG | + | chr2.2:3855597-3855616 | MS.gene052010:intron | 25.0% |
! | TACTATATGAAGATGAAATG+TGG | + | chr2.2:3854243-3854262 | MS.gene052010:intron | 25.0% |
! | TGAAGCACAATAAGAAAAAA+AGG | - | chr2.2:3855713-3855732 | None:intergenic | 25.0% |
! | TTCATACATGAGAAACTAAT+AGG | + | chr2.2:3854081-3854100 | MS.gene052010:intron | 25.0% |
! | TTGAGTTTATCTACTAGTAT+TGG | - | chr2.2:3854837-3854856 | None:intergenic | 25.0% |
!! | CAAATGTAGAAAGTTTTTCT+TGG | + | chr2.2:3854529-3854548 | MS.gene052010:intron | 25.0% |
!! | CATATTTTGTGTTGAAGATA+GGG | + | chr2.2:3854992-3855011 | MS.gene052010:CDS | 25.0% |
!! | TAACCTCTTTTATACACTTT+AGG | + | chr2.2:3854403-3854422 | MS.gene052010:intron | 25.0% |
!! | TAAGGTGCTAATTAATTACT+TGG | - | chr2.2:3853984-3854003 | None:intergenic | 25.0% |
!! | TCATATTTTGTGTTGAAGAT+AGG | + | chr2.2:3854991-3855010 | MS.gene052010:CDS | 25.0% |
!! | TTACAAATTTTGTCAGTTCA+TGG | - | chr2.2:3855324-3855343 | None:intergenic | 25.0% |
!!! | CTTTTGTTATAATTGAGCTA+AGG | - | chr2.2:3855599-3855618 | None:intergenic | 25.0% |
!!! | TGTTGACTGAATTTTACTTT+TGG | + | chr2.2:3854275-3854294 | MS.gene052010:intron | 25.0% |
AAAGTTAAGACAACATACCT+TGG | - | chr2.2:3854111-3854130 | None:intergenic | 30.0% | |
AAGCCTAAAGTGTATAAAAG+AGG | - | chr2.2:3854409-3854428 | None:intergenic | 30.0% | |
ACTGTTTACATAAGTCATTC+CGG | + | chr2.2:3854712-3854731 | MS.gene052010:intron | 30.0% | |
AGTTTCTGTGTGATGAATAA+TGG | - | chr2.2:3855862-3855881 | None:intergenic | 30.0% | |
ATAAAACAACAAAGACAGCT+AGG | + | chr2.2:3855501-3855520 | MS.gene052010:intron | 30.0% | |
TAAAACAACAAAGACAGCTA+GGG | + | chr2.2:3855502-3855521 | MS.gene052010:intron | 30.0% | |
TTTCACCTGTATGTACAAAT+AGG | + | chr2.2:3854956-3854975 | MS.gene052010:intron | 30.0% | |
! | TAACTGTTGAGATCTAGTTT+AGG | + | chr2.2:3854319-3854338 | MS.gene052010:intron | 30.0% |
! | TTTTCTTATTGTGCTTCAGA+AGG | + | chr2.2:3855715-3855734 | MS.gene052010:intron | 30.0% |
AATGTTAACTTATGCCCTTG+AGG | + | chr2.2:3854491-3854510 | MS.gene052010:intron | 35.0% | |
ACTTGATGTGTATTCCTCTT+AGG | - | chr2.2:3855161-3855180 | None:intergenic | 35.0% | |
AGAAACTAATAGGTCATCCA+AGG | + | chr2.2:3854091-3854110 | MS.gene052010:intron | 35.0% | |
AGTTAGATTTCATGGCAACT+TGG | - | chr2.2:3855103-3855122 | None:intergenic | 35.0% | |
CTTCTTAACTTATGCCTCAA+GGG | - | chr2.2:3854508-3854527 | None:intergenic | 35.0% | |
CTTGTCCTATTTGTACATAC+AGG | - | chr2.2:3854964-3854983 | None:intergenic | 35.0% | |
GTACATACAGGTGAAACAAA+AGG | - | chr2.2:3854952-3854971 | None:intergenic | 35.0% | |
TCACGTATGAGTTCAATTCT+AGG | - | chr2.2:3855911-3855930 | None:intergenic | 35.0% | |
TCTTCTTAACTTATGCCTCA+AGG | - | chr2.2:3854509-3854528 | None:intergenic | 35.0% | |
TTTGTTAGACATGTGTGACT+TGG | - | chr2.2:3855885-3855904 | None:intergenic | 35.0% | |
!! | GCTTATTTTCATAAGCTCTC+CGG | - | chr2.2:3854734-3854753 | None:intergenic | 35.0% |
!! | TGAATTTTACTTTTGGCCCT+TGG | + | chr2.2:3854282-3854301 | MS.gene052010:intron | 35.0% |
AATAAGTCATCAACACCCCA+AGG | - | chr2.2:3855227-3855246 | None:intergenic | 40.0% | |
ACTTGGCATATGTCACATCT+AGG | - | chr2.2:3853967-3853986 | None:intergenic | 40.0% | |
CATACAGGTGAAACAAAAGG+AGG | - | chr2.2:3854949-3854968 | None:intergenic | 40.0% | |
CTTGGCATATGTCACATCTA+GGG | - | chr2.2:3853966-3853985 | None:intergenic | 40.0% | |
GCATTTGTGAGACTGTTTGA+AGG | - | chr2.2:3854815-3854834 | None:intergenic | 40.0% | |
TAACCAAGCACAAAGTCCAA+GGG | - | chr2.2:3854301-3854320 | None:intergenic | 40.0% | |
TGATGTGTATTCCTCTTAGG+TGG | - | chr2.2:3855158-3855177 | None:intergenic | 40.0% | |
TTAACCAAGCACAAAGTCCA+AGG | - | chr2.2:3854302-3854321 | None:intergenic | 40.0% | |
TTTCATGGCAACTTGGATAC+CGG | - | chr2.2:3855096-3855115 | None:intergenic | 40.0% | |
TTTGGCGCAGTTAGATTTCA+TGG | - | chr2.2:3855111-3855130 | None:intergenic | 40.0% | |
! | GACGAATCGATTCATTTACC+AGG | + | chr2.2:3855035-3855054 | MS.gene052010:CDS | 40.0% |
!! | CATGTTAACTTGTGCCCTAA+GGG | - | chr2.2:3854647-3854666 | None:intergenic | 40.0% |
!! | CTCTTTAACTTGTGCCCTTA+GGG | + | chr2.2:3854630-3854649 | MS.gene052010:intron | 40.0% |
!! | GACTGTTTGAAGGCATGTTT+TGG | - | chr2.2:3854805-3854824 | None:intergenic | 40.0% |
!! | TCATGTTAACTTGTGCCCTA+AGG | - | chr2.2:3854648-3854667 | None:intergenic | 40.0% |
!! | TTGGGGTGTTGATGACTTAT+TGG | + | chr2.2:3855226-3855245 | MS.gene052010:CDS | 40.0% |
AGACGACGAACAAACTCACT+TGG | + | chr2.2:3855130-3855149 | MS.gene052010:CDS | 45.0% | |
AGAGATGGAATGGTTCACAG+AGG | + | chr2.2:3855754-3855773 | MS.gene052010:CDS | 45.0% | |
AGCTTGCAAGCAAACATCAG+AGG | + | chr2.2:3853911-3853930 | MS.gene052010:CDS | 45.0% | |
ATGGAATGGTTCACAGAGGA+GGG | + | chr2.2:3855758-3855777 | MS.gene052010:CDS | 45.0% | |
CAGAAGGATTCCATGCAGTT+TGG | + | chr2.2:3855731-3855750 | MS.gene052010:intron | 45.0% | |
GCACAGCAAATCATTGTTGC+AGG | - | chr2.2:3853838-3853857 | None:intergenic | 45.0% | |
TACTTTACCGTGCCTGATCT+TGG | + | chr2.2:3855956-3855975 | MS.gene052010:CDS | 45.0% | |
TGACTTCACTCAAGAAGCCA+TGG | + | chr2.2:3855793-3855812 | MS.gene052010:CDS | 45.0% | |
TGCAGTTTGGAGAGATGGAA+TGG | + | chr2.2:3855744-3855763 | MS.gene052010:CDS | 45.0% | |
TGGTTGCTAGCATGAGTTAC+TGG | - | chr2.2:3855842-3855861 | None:intergenic | 45.0% | |
TTCCATCTCTCCAAACTGCA+TGG | - | chr2.2:3855744-3855763 | None:intergenic | 45.0% | |
TTCCATGCAGTTTGGAGAGA+TGG | + | chr2.2:3855739-3855758 | MS.gene052010:CDS | 45.0% | |
! | CTTTCTGGAGATGTAGTGTG+AGG | + | chr2.2:3854194-3854213 | MS.gene052010:intron | 45.0% |
! | GTGAGTTTGTTCGTCGTCTT+TGG | - | chr2.2:3855129-3855148 | None:intergenic | 45.0% |
! | TGATTTGCAGAAAGGCTTCC+TGG | - | chr2.2:3855056-3855075 | None:intergenic | 45.0% |
! | TTCACAGAGGAGGGTCTTTT+TGG | + | chr2.2:3855767-3855786 | MS.gene052010:CDS | 45.0% |
!! | GCTCTTTAACTTGTGCCCTT+AGG | + | chr2.2:3854629-3854648 | MS.gene052010:intron | 45.0% |
AAGTCATCAACACCCCAAGG+AGG | - | chr2.2:3855224-3855243 | None:intergenic | 50.0% | |
CCTGACTTTACACCTCCTTG+GGG | + | chr2.2:3855209-3855228 | MS.gene052010:CDS | 50.0% | |
CTCACTTGGAACCACCTAAG+AGG | + | chr2.2:3855144-3855163 | MS.gene052010:CDS | 50.0% | |
GATGGAATGGTTCACAGAGG+AGG | + | chr2.2:3855757-3855776 | MS.gene052010:CDS | 50.0% | |
GCATGAGTTACTGGAAGCTG+AGG | - | chr2.2:3855833-3855852 | None:intergenic | 50.0% | |
GCCTGACTTTACACCTCCTT+GGG | + | chr2.2:3855208-3855227 | MS.gene052010:CDS | 50.0% | |
TGCCTGACTTTACACCTCCT+TGG | + | chr2.2:3855207-3855226 | MS.gene052010:CDS | 50.0% | |
! | AAGTCAGGCACTTGCTGAGA+AGG | - | chr2.2:3855197-3855216 | None:intergenic | 50.0% |
! | AGATAGGGCACTCTTCTGTG+AGG | + | chr2.2:3855007-3855026 | MS.gene052010:CDS | 50.0% |
!! | AGCGCTGGTGATTTGCAGAA+AGG | - | chr2.2:3855064-3855083 | None:intergenic | 50.0% |
AGGAACTTCAGCTGCAGCCA+TGG | - | chr2.2:3855813-3855832 | None:intergenic | 55.0% | |
CAACTTGGATACCGGTGGCA+AGG | - | chr2.2:3855088-3855107 | None:intergenic | 55.0% | |
CATGGCAACTTGGATACCGG+TGG | - | chr2.2:3855093-3855112 | None:intergenic | 55.0% | |
TGGCCCTTGGACTTTGTGCT+TGG | + | chr2.2:3854295-3854314 | MS.gene052010:intron | 55.0% | |
! | CCCCAAGGAGGTGTAAAGTC+AGG | - | chr2.2:3855212-3855231 | None:intergenic | 55.0% |
CACCAGCGCTTCCTTGCCAC+CGG | + | chr2.2:3855074-3855093 | MS.gene052010:CDS | 65.0% | |
! | TACCGGTGGCAAGGAAGCGC+TGG | - | chr2.2:3855079-3855098 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 3853802 | 3855982 | 3853802 | ID=MS.gene052010 |
chr2.2 | mRNA | 3853802 | 3855982 | 3853802 | ID=MS.gene052010.t1;Parent=MS.gene052010 |
chr2.2 | exon | 3853802 | 3853984 | 3853802 | ID=MS.gene052010.t1.exon1;Parent=MS.gene052010.t1 |
chr2.2 | CDS | 3853802 | 3853984 | 3853802 | ID=cds.MS.gene052010.t1;Parent=MS.gene052010.t1 |
chr2.2 | exon | 3854978 | 3855277 | 3854978 | ID=MS.gene052010.t1.exon2;Parent=MS.gene052010.t1 |
chr2.2 | CDS | 3854978 | 3855277 | 3854978 | ID=cds.MS.gene052010.t1;Parent=MS.gene052010.t1 |
chr2.2 | exon | 3855734 | 3855982 | 3855734 | ID=MS.gene052010.t1.exon3;Parent=MS.gene052010.t1 |
chr2.2 | CDS | 3855734 | 3855982 | 3855734 | ID=cds.MS.gene052010.t1;Parent=MS.gene052010.t1 |
Gene Sequence |
Protein sequence |