Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98727.t1 | XP_003597525.1 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 5.90E-136 | 493.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98727.t1 | Q96288 | 57.5 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 1.6e-73 | 277.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98727.t1 | G7IHV4 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 4.3e-136 | 493.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene98727.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049396 | MS.gene98727 | 0.80079 | 1.22E-48 | -1.69E-46 |
MS.gene052010 | MS.gene98727 | 0.938059 | 1.26E-98 | -1.69E-46 |
MS.gene053162 | MS.gene98727 | 0.810328 | 1.22E-50 | -1.69E-46 |
MS.gene053505 | MS.gene98727 | 0.8011 | 1.06E-48 | -1.69E-46 |
MS.gene054564 | MS.gene98727 | 0.826237 | 3.03E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98727.t1 | MTR_2g099010 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 0.0 | 498 |
MS.gene98727.t1 | MTR_2g099010 | 97.531 | 243 | 5 | 1 | 1 | 243 | 1 | 242 | 2.05e-179 | 492 |
MS.gene98727.t1 | MTR_2g099010 | 95.722 | 187 | 8 | 0 | 57 | 243 | 31 | 217 | 1.85e-123 | 350 |
MS.gene98727.t1 | MTR_4g067320 | 69.672 | 244 | 69 | 3 | 1 | 243 | 1 | 240 | 4.44e-123 | 349 |
MS.gene98727.t1 | MTR_4g067320 | 69.262 | 244 | 69 | 4 | 1 | 243 | 1 | 239 | 8.40e-121 | 343 |
MS.gene98727.t1 | MTR_2g073370 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.50e-41 | 144 |
MS.gene98727.t1 | MTR_1g023260 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 9.09e-37 | 130 |
MS.gene98727.t1 | MTR_1g023260 | 41.040 | 173 | 81 | 2 | 1 | 152 | 1 | 173 | 6.42e-35 | 124 |
MS.gene98727.t1 | MTR_3g113070 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 1.13e-34 | 124 |
MS.gene98727.t1 | MTR_3g117320 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 8.26e-34 | 122 |
MS.gene98727.t1 | MTR_4g071200 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.50e-32 | 118 |
MS.gene98727.t1 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.32e-23 | 94.4 |
MS.gene98727.t1 | MTR_5g021580 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.51e-23 | 94.0 |
MS.gene98727.t1 | MTR_3g105710 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 2.55e-17 | 79.3 |
MS.gene98727.t1 | MTR_7g018170 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 1.12e-16 | 78.6 |
MS.gene98727.t1 | MTR_7g018170 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 4.61e-11 | 62.4 |
MS.gene98727.t1 | MTR_1g013450 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 3.30e-16 | 76.6 |
MS.gene98727.t1 | MTR_4g128930 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 4.03e-15 | 74.3 |
MS.gene98727.t1 | MTR_7g108150 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 5.31e-13 | 68.2 |
MS.gene98727.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 8.51e-12 | 64.7 |
MS.gene98727.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.15e-11 | 63.5 |
MS.gene98727.t1 | MTR_3g082630 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 7.55e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98727.t1 | AT1G06040 | 57.480 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.84e-94 | 277 |
MS.gene98727.t1 | AT2G31380 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 4.04e-94 | 276 |
MS.gene98727.t1 | AT1G06040 | 63.529 | 170 | 51 | 4 | 1 | 161 | 1 | 168 | 2.71e-68 | 208 |
MS.gene98727.t1 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.12e-40 | 141 |
MS.gene98727.t1 | AT1G78600 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 2.08e-40 | 141 |
MS.gene98727.t1 | AT4G10240 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.04e-35 | 124 |
MS.gene98727.t1 | AT1G75540 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 3.58e-34 | 125 |
MS.gene98727.t1 | AT4G39070 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.52e-30 | 113 |
MS.gene98727.t1 | AT2G21320 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 2.50e-23 | 93.2 |
MS.gene98727.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.47e-23 | 92.4 |
MS.gene98727.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.47e-23 | 92.4 |
MS.gene98727.t1 | AT5G15850 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 3.60e-17 | 79.7 |
MS.gene98727.t1 | AT2G24790 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.49e-17 | 78.2 |
MS.gene98727.t1 | AT2G24790 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.11e-16 | 76.6 |
MS.gene98727.t1 | AT3G02380 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.22e-15 | 75.5 |
MS.gene98727.t1 | AT5G24930 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.57e-15 | 75.5 |
MS.gene98727.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.03e-15 | 73.6 |
MS.gene98727.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.54e-15 | 72.4 |
MS.gene98727.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.24e-12 | 65.9 |
MS.gene98727.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.36e-12 | 65.9 |
MS.gene98727.t1 | AT1G28050 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.36e-12 | 65.9 |
MS.gene98727.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.16e-11 | 62.0 |
MS.gene98727.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.92e-11 | 61.6 |
Find 43 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2.1:-5479962 | None:intergenic |
CAGAAGGATTCCATGCAATT+TGG | 0.232122 | 2.1:+5480569 | MS.gene98727:intron |
TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2.1:+5480062 | MS.gene98727:CDS |
ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2.1:-5479994 | None:intergenic |
TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2.1:-5480746 | None:intergenic |
AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2.1:-5480697 | None:intergenic |
TTTGGCGCAGTTAGATTTCA+TGG | 0.360694 | 2.1:-5479944 | None:intergenic |
TGATTTGCAGAAAGGCTTCC+TGG | 0.363066 | 2.1:-5479889 | None:intergenic |
TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2.1:+5480794 | MS.gene98727:CDS |
TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2.1:-5480677 | None:intergenic |
ACTTGGCATATGTCACATCT+AGG | 0.395238 | 2.1:-5479093 | None:intergenic |
GCACAACAAATCATTGTTGC+AGG | 0.412099 | 2.1:-5478964 | None:intergenic |
TTCCATGCAATTTGGAGAGA+TGG | 0.459053 | 2.1:+5480577 | MS.gene98727:CDS |
CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2.1:-5480806 | None:intergenic |
AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2.1:-5480648 | None:intergenic |
TTTCATGGCAACTTGGATAC+CGG | 0.500273 | 2.1:-5479929 | None:intergenic |
AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2.1:-5480030 | None:intergenic |
TACCGGTGGCAAGGAAGCGC+TGG | 0.507223 | 2.1:-5479912 | None:intergenic |
TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2.1:-5479991 | None:intergenic |
TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2.1:-5480720 | None:intergenic |
TGCAATTTGGAGAGATGGAA+TGG | 0.517463 | 2.1:+5480582 | MS.gene98727:CDS |
CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2.1:+5479980 | MS.gene98727:CDS |
AGTTAGATTTCATGGCAACT+TGG | 0.524204 | 2.1:-5479936 | None:intergenic |
AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2.1:-5479897 | None:intergenic |
TTCCATCTCTCCAAATTGCA+TGG | 0.542444 | 2.1:-5480579 | None:intergenic |
CACCAGCGCTTCCTTGCCAC+CGG | 0.564595 | 2.1:+5479910 | MS.gene98727:CDS |
AGACGACGAACAAACTCACT+TGG | 0.565694 | 2.1:+5479966 | MS.gene98727:CDS |
GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2.1:+5480595 | MS.gene98727:CDS |
CTTGGCATATGTCACATCTA+GGG | 0.582493 | 2.1:-5479092 | None:intergenic |
ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2.1:+5480596 | MS.gene98727:CDS |
CAACTTGGATACCGGTGGCA+AGG | 0.586081 | 2.1:-5479921 | None:intergenic |
AGCTTGCAAGCAAGCATCAG+AGG | 0.588673 | 2.1:+5479040 | MS.gene98727:CDS |
TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2.1:+5480631 | MS.gene98727:CDS |
AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2.1:-5480060 | None:intergenic |
GACGAATCGATTCATTTACC+AGG | 0.619460 | 2.1:+5479871 | MS.gene98727:CDS |
GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2.1:-5480801 | None:intergenic |
CATGGCAACTTGGATACCGG+TGG | 0.632565 | 2.1:-5479926 | None:intergenic |
ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2.1:-5480059 | None:intergenic |
GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2.1:-5480668 | None:intergenic |
TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2.1:-5480058 | None:intergenic |
AGATAGGGCACTCTTCTGTG+AGG | 0.701688 | 2.1:+5479843 | MS.gene98727:CDS |
AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2.1:-5480057 | None:intergenic |
AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2.1:+5480592 | MS.gene98727:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCATGTATCATTAGATAAT+AGG | - | chr2.1:5480471-5480490 | None:intergenic | 20.0% |
!! | TAATGTGCTAATTAATTACT+TGG | - | chr2.1:5479113-5479132 | None:intergenic | 20.0% |
!! | TACTATATGAATATGAAATG+TGG | + | chr2.1:5479264-5479283 | MS.gene98727:intron | 20.0% |
!! | TGAAATCGAATATTTAACTA+AGG | - | chr2.1:5480188-5480207 | None:intergenic | 20.0% |
!!! | GAGACAAAAAACATTTTATA+AGG | - | chr2.1:5480226-5480245 | None:intergenic | 20.0% |
!!! | TTACAAAACTACATGTTTTT+AGG | - | chr2.1:5480258-5480277 | None:intergenic | 20.0% |
!!! | TTACAAATTTTGTTAGTTCA+TGG | - | chr2.1:5480160-5480179 | None:intergenic | 20.0% |
!!! | TTTTGTTATAATTGAGCTAA+GGG | - | chr2.1:5480438-5480457 | None:intergenic | 20.0% |
! | AATTTGTACGAACTAAAATG+TGG | + | chr2.1:5480276-5480295 | MS.gene98727:intron | 25.0% |
! | ACTATTTACATAAGTCATTC+TGG | + | chr2.1:5479572-5479591 | MS.gene98727:intron | 25.0% |
! | CTTAGCTCAATTATAACAAA+AGG | + | chr2.1:5480437-5480456 | MS.gene98727:intron | 25.0% |
! | TGAAGCACAATAAGAAAAAA+AGG | - | chr2.1:5480551-5480570 | None:intergenic | 25.0% |
! | TTCATACATGAGAAACTAAT+AGG | + | chr2.1:5479209-5479228 | MS.gene98727:intron | 25.0% |
!! | AAAGCCTAAAGTGTTTAAAA+GGG | - | chr2.1:5479463-5479482 | None:intergenic | 25.0% |
!! | CATATTTTGTGTTGAAGATA+GGG | + | chr2.1:5479828-5479847 | MS.gene98727:CDS | 25.0% |
!! | TCATATTTTGTGTTGAAGAT+AGG | + | chr2.1:5479827-5479846 | MS.gene98727:CDS | 25.0% |
!!! | CTTTTGTTATAATTGAGCTA+AGG | - | chr2.1:5480439-5480458 | None:intergenic | 25.0% |
!!! | TATTTTGAAAGTAGCTTATG+TGG | + | chr2.1:5479409-5479428 | MS.gene98727:intron | 25.0% |
!!! | TGTTGACTGAATTTTACTTT+TGG | + | chr2.1:5479296-5479315 | MS.gene98727:intron | 25.0% |
AAAGTTAAGACAACATACCT+TGG | - | chr2.1:5479239-5479258 | None:intergenic | 30.0% | |
AGTTTCTGTGTGATGAATAA+TGG | - | chr2.1:5480700-5480719 | None:intergenic | 30.0% | |
ATAAAACAACAAAGACAGCT+AGG | + | chr2.1:5480337-5480356 | MS.gene98727:intron | 30.0% | |
TAAAACAACAAAGACAGCTA+GGG | + | chr2.1:5480338-5480357 | MS.gene98727:intron | 30.0% | |
TAACTGTTGAGATCAAGATT+AGG | + | chr2.1:5479340-5479359 | MS.gene98727:intron | 30.0% | |
! | AAGCCTAAAGTGTTTAAAAG+GGG | - | chr2.1:5479462-5479481 | None:intergenic | 30.0% |
! | CAAAGCCTAAAGTGTTTAAA+AGG | - | chr2.1:5479464-5479483 | None:intergenic | 30.0% |
! | TAACCCCTTTTAAACACTTT+AGG | + | chr2.1:5479456-5479475 | MS.gene98727:intron | 30.0% |
! | TTTTCTTATTGTGCTTCAGA+AGG | + | chr2.1:5480553-5480572 | MS.gene98727:intron | 30.0% |
AAAGGAGGAAGGAAAGTTAA+TGG | - | chr2.1:5479770-5479789 | None:intergenic | 35.0% | |
AAGTAGCATGTATGAGTTAG+TGG | + | chr2.1:5479374-5479393 | MS.gene98727:intron | 35.0% | |
ACTTGATGTGTATTCCTCTT+AGG | - | chr2.1:5479997-5480016 | None:intergenic | 35.0% | |
AGAAACTAATAGGTCATCCA+AGG | + | chr2.1:5479219-5479238 | MS.gene98727:intron | 35.0% | |
AGTAGCATGTATGAGTTAGT+GGG | + | chr2.1:5479375-5479394 | MS.gene98727:intron | 35.0% | |
AGTTAGATTTCATGGCAACT+TGG | - | chr2.1:5479939-5479958 | None:intergenic | 35.0% | |
TCACGTATGAGTTCAATTCT+AGG | - | chr2.1:5480749-5480768 | None:intergenic | 35.0% | |
TTGTCCTGTTTGTACATACA+GGG | - | chr2.1:5479799-5479818 | None:intergenic | 35.0% | |
TTTGTTAGACATGTGTGACT+TGG | - | chr2.1:5480723-5480742 | None:intergenic | 35.0% | |
!! | TGAATTTTACTTTTGGCCCT+TGG | + | chr2.1:5479303-5479322 | MS.gene98727:intron | 35.0% |
AATAAGTCATCAACACCCCA+AGG | - | chr2.1:5480063-5480082 | None:intergenic | 40.0% | |
ACTTGGCATATGTCACATCT+AGG | - | chr2.1:5479096-5479115 | None:intergenic | 40.0% | |
ATAAGTCATCAACACCCCAA+GGG | - | chr2.1:5480062-5480081 | None:intergenic | 40.0% | |
CAGAAGGATTCCATGCAATT+TGG | + | chr2.1:5480569-5480588 | MS.gene98727:intron | 40.0% | |
CTTGGCATATGTCACATCTA+GGG | - | chr2.1:5479095-5479114 | None:intergenic | 40.0% | |
CTTGTCCTGTTTGTACATAC+AGG | - | chr2.1:5479800-5479819 | None:intergenic | 40.0% | |
GCACAACAAATCATTGTTGC+AGG | - | chr2.1:5478967-5478986 | None:intergenic | 40.0% | |
GCATTTGTGAGACTGTTTGA+AGG | - | chr2.1:5479675-5479694 | None:intergenic | 40.0% | |
GTACATACAGGGGAAACAAA+AGG | - | chr2.1:5479788-5479807 | None:intergenic | 40.0% | |
TAACCAAGCTCAAAGTCCAA+GGG | - | chr2.1:5479322-5479341 | None:intergenic | 40.0% | |
TGATGTGTATTCCTCTTAGG+TGG | - | chr2.1:5479994-5480013 | None:intergenic | 40.0% | |
TGCAATTTGGAGAGATGGAA+TGG | + | chr2.1:5480582-5480601 | MS.gene98727:CDS | 40.0% | |
TGTATGAGTTAGTGGGAAGT+AGG | + | chr2.1:5479382-5479401 | MS.gene98727:intron | 40.0% | |
TGTCCTGTTTGTACATACAG+GGG | - | chr2.1:5479798-5479817 | None:intergenic | 40.0% | |
TTAACCAAGCTCAAAGTCCA+AGG | - | chr2.1:5479323-5479342 | None:intergenic | 40.0% | |
TTCCATCTCTCCAAATTGCA+TGG | - | chr2.1:5480582-5480601 | None:intergenic | 40.0% | |
TTCCATGCAATTTGGAGAGA+TGG | + | chr2.1:5480577-5480596 | MS.gene98727:CDS | 40.0% | |
TTTCATGGCAACTTGGATAC+CGG | - | chr2.1:5479932-5479951 | None:intergenic | 40.0% | |
TTTCCCCTGTATGTACAAAC+AGG | + | chr2.1:5479792-5479811 | MS.gene98727:intron | 40.0% | |
TTTGGCGCAGTTAGATTTCA+TGG | - | chr2.1:5479947-5479966 | None:intergenic | 40.0% | |
! | AGACTGTTTGAAGGCATGTT+TGG | - | chr2.1:5479666-5479685 | None:intergenic | 40.0% |
! | GACGAATCGATTCATTTACC+AGG | + | chr2.1:5479871-5479890 | MS.gene98727:CDS | 40.0% |
! | GACTGTTTGAAGGCATGTTT+GGG | - | chr2.1:5479665-5479684 | None:intergenic | 40.0% |
!! | TTGGGGTGTTGATGACTTAT+TGG | + | chr2.1:5480062-5480081 | MS.gene98727:CDS | 40.0% |
AGACGACGAACAAACTCACT+TGG | + | chr2.1:5479966-5479985 | MS.gene98727:CDS | 45.0% | |
AGAGATGGAATGGTTCACAG+AGG | + | chr2.1:5480592-5480611 | MS.gene98727:CDS | 45.0% | |
AGTCTCACAAATGCTAACGC+TGG | + | chr2.1:5479681-5479700 | MS.gene98727:intron | 45.0% | |
ATGGAATGGTTCACAGAGGA+GGG | + | chr2.1:5480596-5480615 | MS.gene98727:CDS | 45.0% | |
CATACAGGGGAAACAAAAGG+AGG | - | chr2.1:5479785-5479804 | None:intergenic | 45.0% | |
TAAGTCATCAACACCCCAAG+GGG | - | chr2.1:5480061-5480080 | None:intergenic | 45.0% | |
TACTTTACCGTGCCTGATCT+TGG | + | chr2.1:5480794-5480813 | MS.gene98727:CDS | 45.0% | |
TGACTTCACTCAAGAAGCCA+TGG | + | chr2.1:5480631-5480650 | MS.gene98727:CDS | 45.0% | |
TGGTTGCTAGCATGAGTTAC+TGG | - | chr2.1:5480680-5480699 | None:intergenic | 45.0% | |
! | GTGAGTTTGTTCGTCGTCTT+TGG | - | chr2.1:5479965-5479984 | None:intergenic | 45.0% |
! | TGATTTGCAGAAAGGCTTCC+TGG | - | chr2.1:5479892-5479911 | None:intergenic | 45.0% |
! | TTCACAGAGGAGGGTCTTTT+TGG | + | chr2.1:5480605-5480624 | MS.gene98727:CDS | 45.0% |
AAGTCATCAACACCCCAAGG+GGG | - | chr2.1:5480060-5480079 | None:intergenic | 50.0% | |
AGCTTGCAAGCAAGCATCAG+AGG | + | chr2.1:5479040-5479059 | MS.gene98727:CDS | 50.0% | |
CAGGGGAAACAAAAGGAGGA+AGG | - | chr2.1:5479781-5479800 | None:intergenic | 50.0% | |
CTCACTTGGAACCACCTAAG+AGG | + | chr2.1:5479980-5479999 | MS.gene98727:CDS | 50.0% | |
GATGGAATGGTTCACAGAGG+AGG | + | chr2.1:5480595-5480614 | MS.gene98727:CDS | 50.0% | |
GCATGAGTTACTGGAAGCTG+AGG | - | chr2.1:5480671-5480690 | None:intergenic | 50.0% | |
! | AAGTCAGGCACTTGCTGAGA+AGG | - | chr2.1:5480033-5480052 | None:intergenic | 50.0% |
! | AGATAGGGCACTCTTCTGTG+AGG | + | chr2.1:5479843-5479862 | MS.gene98727:CDS | 50.0% |
!! | AGCGCTGGTGATTTGCAGAA+AGG | - | chr2.1:5479900-5479919 | None:intergenic | 50.0% |
AGGAACTTCAGCTGCAGCCA+TGG | - | chr2.1:5480651-5480670 | None:intergenic | 55.0% | |
CAACTTGGATACCGGTGGCA+AGG | - | chr2.1:5479924-5479943 | None:intergenic | 55.0% | |
CATGGCAACTTGGATACCGG+TGG | - | chr2.1:5479929-5479948 | None:intergenic | 55.0% | |
CCTGACTTTACACCCCCTTG+GGG | + | chr2.1:5480045-5480064 | MS.gene98727:CDS | 55.0% | |
GCCTGACTTTACACCCCCTT+GGG | + | chr2.1:5480044-5480063 | MS.gene98727:CDS | 55.0% | |
TGCCTGACTTTACACCCCCT+TGG | + | chr2.1:5480043-5480062 | MS.gene98727:CDS | 55.0% | |
TGGCCCTTGGACTTTGAGCT+TGG | + | chr2.1:5479316-5479335 | MS.gene98727:intron | 55.0% | |
! | CCCCAAGGGGGTGTAAAGTC+AGG | - | chr2.1:5480048-5480067 | None:intergenic | 60.0% |
CACCAGCGCTTCCTTGCCAC+CGG | + | chr2.1:5479910-5479929 | MS.gene98727:CDS | 65.0% | |
! | TACCGGTGGCAAGGAAGCGC+TGG | - | chr2.1:5479915-5479934 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 5478931 | 5480820 | 5478931 | ID=MS.gene98727 |
chr2.1 | mRNA | 5478931 | 5480820 | 5478931 | ID=MS.gene98727.t1;Parent=MS.gene98727 |
chr2.1 | exon | 5478931 | 5479113 | 5478931 | ID=MS.gene98727.t1.exon1;Parent=MS.gene98727.t1 |
chr2.1 | CDS | 5478931 | 5479113 | 5478931 | ID=cds.MS.gene98727.t1;Parent=MS.gene98727.t1 |
chr2.1 | exon | 5479814 | 5480113 | 5479814 | ID=MS.gene98727.t1.exon2;Parent=MS.gene98727.t1 |
chr2.1 | CDS | 5479814 | 5480113 | 5479814 | ID=cds.MS.gene98727.t1;Parent=MS.gene98727.t1 |
chr2.1 | exon | 5480572 | 5480820 | 5480572 | ID=MS.gene98727.t1.exon3;Parent=MS.gene98727.t1 |
chr2.1 | CDS | 5480572 | 5480820 | 5480572 | ID=cds.MS.gene98727.t1;Parent=MS.gene98727.t1 |
Gene Sequence |
Protein sequence |