Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052189.t1 | XP_003601937.1 | 96.8 | 317 | 10 | 0 | 1 | 317 | 1 | 317 | 7.90E-181 | 642.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052189.t1 | P9WNH2 | 26.7 | 240 | 163 | 7 | 52 | 280 | 38 | 275 | 1.6e-12 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052189.t1 | G7J3Q3 | 96.8 | 317 | 10 | 0 | 1 | 317 | 1 | 317 | 5.7e-181 | 642.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052189 | MS.gene061773 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene052189 | MS.gene29880 | 0.811842 | 5.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052189.t1 | MTR_3g087050 | 96.845 | 317 | 10 | 0 | 1 | 317 | 1 | 317 | 0.0 | 645 |
| MS.gene052189.t1 | MTR_5g064035 | 58.863 | 299 | 121 | 1 | 4 | 300 | 2 | 300 | 2.44e-133 | 381 |
| MS.gene052189.t1 | MTR_2g008880 | 56.376 | 298 | 129 | 1 | 4 | 300 | 6 | 303 | 1.22e-132 | 380 |
| MS.gene052189.t1 | MTR_8g090060 | 56.869 | 313 | 99 | 2 | 7 | 317 | 5 | 283 | 1.92e-126 | 363 |
| MS.gene052189.t1 | MTR_3g105290 | 39.731 | 297 | 174 | 4 | 6 | 298 | 5 | 300 | 7.46e-73 | 227 |
| MS.gene052189.t1 | MTR_3g105290 | 40.000 | 240 | 139 | 4 | 6 | 241 | 5 | 243 | 1.37e-55 | 181 |
| MS.gene052189.t1 | MTR_5g020320 | 34.915 | 295 | 174 | 6 | 15 | 298 | 9 | 296 | 3.63e-54 | 179 |
| MS.gene052189.t1 | MTR_5g020250 | 34.385 | 317 | 181 | 6 | 11 | 311 | 10 | 315 | 5.43e-53 | 176 |
| MS.gene052189.t1 | MTR_5g020260 | 35.256 | 312 | 177 | 8 | 19 | 314 | 14 | 316 | 7.45e-53 | 176 |
| MS.gene052189.t1 | MTR_8g077290 | 32.776 | 299 | 182 | 5 | 24 | 307 | 19 | 313 | 1.00e-50 | 171 |
| MS.gene052189.t1 | MTR_8g077290 | 33.333 | 255 | 152 | 4 | 24 | 263 | 19 | 270 | 7.83e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052189.t1 | AT4G39955 | 61.775 | 293 | 111 | 1 | 7 | 298 | 5 | 297 | 8.23e-140 | 398 |
| MS.gene052189.t1 | AT5G09430 | 57.143 | 301 | 124 | 1 | 5 | 300 | 9 | 309 | 4.19e-134 | 383 |
| MS.gene052189.t1 | AT1G78210 | 49.833 | 299 | 145 | 3 | 7 | 300 | 5 | 303 | 8.19e-107 | 314 |
| MS.gene052189.t1 | AT5G21950 | 38.538 | 301 | 179 | 3 | 6 | 301 | 5 | 304 | 2.56e-66 | 211 |
| MS.gene052189.t1 | AT5G21950 | 38.538 | 301 | 179 | 3 | 6 | 301 | 57 | 356 | 1.71e-65 | 210 |
| MS.gene052189.t1 | AT5G21950 | 38.403 | 263 | 156 | 3 | 6 | 263 | 5 | 266 | 4.09e-58 | 188 |
| MS.gene052189.t1 | AT4G33180 | 32.792 | 308 | 193 | 6 | 1 | 298 | 1 | 304 | 4.06e-54 | 179 |
| MS.gene052189.t1 | AT2G18360 | 33.446 | 296 | 178 | 4 | 24 | 303 | 19 | 311 | 9.07e-53 | 176 |
| MS.gene052189.t1 | AT1G17430 | 34.859 | 284 | 174 | 5 | 26 | 301 | 52 | 332 | 6.25e-52 | 174 |
| MS.gene052189.t1 | AT1G72620 | 33.929 | 280 | 176 | 5 | 26 | 299 | 56 | 332 | 2.05e-50 | 170 |
| MS.gene052189.t1 | AT4G36610 | 31.488 | 289 | 181 | 4 | 24 | 298 | 19 | 304 | 1.15e-46 | 160 |
| MS.gene052189.t1 | AT2G18360 | 33.984 | 256 | 150 | 4 | 24 | 263 | 19 | 271 | 2.25e-45 | 155 |
| MS.gene052189.t1 | AT5G21950 | 39.394 | 198 | 115 | 2 | 18 | 211 | 17 | 213 | 2.38e-42 | 146 |
| MS.gene052189.t1 | AT5G21950 | 39.394 | 198 | 115 | 2 | 18 | 211 | 17 | 213 | 2.38e-42 | 146 |
| MS.gene052189.t1 | AT5G21950 | 39.394 | 198 | 115 | 2 | 18 | 211 | 69 | 265 | 9.66e-42 | 146 |
| MS.gene052189.t1 | AT5G21950 | 39.394 | 198 | 115 | 2 | 18 | 211 | 69 | 265 | 9.66e-42 | 146 |
| MS.gene052189.t1 | AT4G33180 | 35.000 | 220 | 130 | 5 | 1 | 211 | 1 | 216 | 7.37e-38 | 134 |
Find 104 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTCTTGTACATTTCTT+TGG | 0.196820 | 3.2:+74318104 | None:intergenic |
| TGAAACTGCTCCGATCTTTC+AGG | 0.202585 | 3.2:+74319459 | None:intergenic |
| CTGCTAAGTCCTTGCCTAAT+TGG | 0.228910 | 3.2:-74319161 | MS.gene052189:CDS |
| CAGGAGTTTGTTTGGAAGAT+AGG | 0.254201 | 3.2:-74319296 | MS.gene052189:CDS |
| TAGTATGGCGGCGATGTTTC+CGG | 0.254621 | 3.2:-74319349 | MS.gene052189:CDS |
| ACCAACTCCTTCATCATTTC+CGG | 0.265852 | 3.2:+74319204 | None:intergenic |
| AGCAGCCTATGCAAATTATA+TGG | 0.275770 | 3.2:-74318346 | MS.gene052189:intron |
| TTGAGCTATGGTGGGTTTGT+GGG | 0.297304 | 3.2:-74319375 | MS.gene052189:CDS |
| TTGTTTGGAAGATAGGGATA+TGG | 0.304346 | 3.2:-74319289 | MS.gene052189:CDS |
| AAACAAACCTGTGTAATCTT+AGG | 0.325826 | 3.2:+74318437 | None:intergenic |
| GCTTCACAACATTGTGTAAC+TGG | 0.327995 | 3.2:-74319725 | MS.gene052189:CDS |
| GTTGAGCTATGGTGGGTTTG+TGG | 0.335402 | 3.2:-74319376 | MS.gene052189:CDS |
| AAATTCTTGTACATTTCTTT+GGG | 0.343234 | 3.2:+74318105 | None:intergenic |
| TGCTGGAGGGTCATGGGGTG+AGG | 0.360209 | 3.2:-74319416 | MS.gene052189:CDS |
| GTGGTTGGGTTGAGCTATGG+TGG | 0.379394 | 3.2:-74319384 | MS.gene052189:CDS |
| TTCCTCATTGATCCTTTCAC+AGG | 0.381723 | 3.2:-74318075 | MS.gene052189:CDS |
| GTGAGGGAGATGATGGTGGT+TGG | 0.391439 | 3.2:-74319399 | MS.gene052189:CDS |
| CGTTACTCCTTCTCTAAATC+CGG | 0.400271 | 3.2:-74319696 | MS.gene052189:CDS |
| ACGGAACAGTAATGCATTGC+TGG | 0.407186 | 3.2:-74319644 | MS.gene052189:CDS |
| GATTTGTGCAGGAGTTTGTT+TGG | 0.411549 | 3.2:-74319304 | MS.gene052189:CDS |
| ATGCGTGTGCTGGAGGGTCA+TGG | 0.413949 | 3.2:-74319423 | MS.gene052189:CDS |
| TGAGGGAGATGATGGTGGTT+GGG | 0.419497 | 3.2:-74319398 | MS.gene052189:CDS |
| TTCTATCCTTATGAAGTGCT+TGG | 0.419587 | 3.2:+74318474 | None:intergenic |
| TGCGTGTGCTGGAGGGTCAT+GGG | 0.422103 | 3.2:-74319422 | MS.gene052189:CDS |
| ACCACCTTCTCCACCTTCTC+CGG | 0.423087 | 3.2:+74319330 | None:intergenic |
| GAAGATAGGGATATGGATGA+TGG | 0.428586 | 3.2:-74319282 | MS.gene052189:CDS |
| AAATCATTAAGAAACCAATT+AGG | 0.429812 | 3.2:+74319147 | None:intergenic |
| AGGAGTTTGTTTGGAAGATA+GGG | 0.434423 | 3.2:-74319295 | MS.gene052189:CDS |
| ATGGTGGTTGGGTTGAGCTA+TGG | 0.438281 | 3.2:-74319387 | MS.gene052189:CDS |
| GCTGGAGGGTCATGGGGTGA+GGG | 0.444477 | 3.2:-74319415 | MS.gene052189:CDS |
| GCAGCCTATGCAAATTATAT+GGG | 0.449356 | 3.2:-74318345 | MS.gene052189:intron |
| TCATGGGGTGAGGGAGATGA+TGG | 0.453643 | 3.2:-74319406 | MS.gene052189:CDS |
| TACTGTTCCGTCACCGAGAT+CGG | 0.458068 | 3.2:+74319656 | None:intergenic |
| CTGCTCCGATCTTTCAGGTC+TGG | 0.459895 | 3.2:+74319464 | None:intergenic |
| AAATTACCCTTTCAATCTGT+GGG | 0.462208 | 3.2:+74318289 | None:intergenic |
| CCATAGCAATGGTCATAAGT+TGG | 0.464536 | 3.2:-74318037 | MS.gene052189:CDS |
| TAAATTACCCTTTCAATCTG+TGG | 0.468162 | 3.2:+74318288 | None:intergenic |
| TGGGTTTGTGGGGTATAGTA+TGG | 0.468251 | 3.2:-74319364 | MS.gene052189:CDS |
| ACTAATCCAAGCACTTCATA+AGG | 0.470484 | 3.2:-74318480 | MS.gene052189:CDS |
| TTGAAGTGGCGTGTGAGCTC+AGG | 0.470697 | 3.2:+74319531 | None:intergenic |
| CTTATACTCATCCATGGAAT+CGG | 0.477823 | 3.2:-74319588 | MS.gene052189:CDS |
| GGCGGCGATGTTTCCGGAGA+AGG | 0.487013 | 3.2:-74319343 | MS.gene052189:CDS |
| TTGCGTTGGCTCCGATTCCA+TGG | 0.488843 | 3.2:+74319577 | None:intergenic |
| TGGTTGGGTTGAGCTATGGT+GGG | 0.490162 | 3.2:-74319383 | MS.gene052189:CDS |
| CAATTAGGCAAGGACTTAGC+AGG | 0.500461 | 3.2:+74319162 | None:intergenic |
| TGGGGTGAGGGAGATGATGG+TGG | 0.501259 | 3.2:-74319403 | MS.gene052189:CDS |
| GAATTAGCCCACAGATTGAA+AGG | 0.506108 | 3.2:-74318296 | MS.gene052189:CDS |
| AATCTGTGGGCTAATTCCAA+TGG | 0.506204 | 3.2:+74318302 | None:intergenic |
| TCTCCAAAGAAAATCAAGTC+TGG | 0.506320 | 3.2:+74319498 | None:intergenic |
| ATCTGTGGGCTAATTCCAAT+GGG | 0.507515 | 3.2:+74318303 | None:intergenic |
| AAATCAACCACCACCGATCT+CGG | 0.508868 | 3.2:-74319669 | MS.gene052189:CDS |
| TGAGCTATGGTGGGTTTGTG+GGG | 0.510310 | 3.2:-74319374 | MS.gene052189:CDS |
| CCAACTTATGACCATTGCTA+TGG | 0.512243 | 3.2:+74318037 | None:intergenic |
| TTCATCATTTCCGGCGTCAA+CGG | 0.513034 | 3.2:+74319213 | None:intergenic |
| TCCTCATTGATCCTTTCACA+GGG | 0.517461 | 3.2:-74318074 | MS.gene052189:CDS |
| AAGGTGGTGGTGATTTGTGC+AGG | 0.521211 | 3.2:-74319315 | MS.gene052189:CDS |
| TACAATCTTGTGTAGACATG+TGG | 0.528825 | 3.2:-74318187 | MS.gene052189:intron |
| TTAGTTCTTTCCTCTCCTGT+CGG | 0.531169 | 3.2:+74318498 | None:intergenic |
| CTAGTGGTAATTGAGGATGC+AGG | 0.531214 | 3.2:-74318150 | MS.gene052189:CDS |
| CCTTCTCTTATACTCATCCA+TGG | 0.532018 | 3.2:-74319594 | MS.gene052189:CDS |
| GTGTGTTATGCGTGTGCTGG+AGG | 0.542258 | 3.2:-74319430 | MS.gene052189:CDS |
| GGCACAGCTAGTGGTAATTG+AGG | 0.548195 | 3.2:-74318157 | MS.gene052189:CDS |
| TCCGTCACCGAGATCGGTGG+TGG | 0.548309 | 3.2:+74319662 | None:intergenic |
| CACGACCAGACCTGAAAGAT+CGG | 0.548640 | 3.2:-74319469 | MS.gene052189:CDS |
| AAGATAGGGATATGGATGAT+GGG | 0.554793 | 3.2:-74319281 | MS.gene052189:CDS |
| GAGCCAACGCAATGTGGCAA+TGG | 0.555796 | 3.2:-74319566 | MS.gene052189:CDS |
| AATTAGCCCACAGATTGAAA+GGG | 0.558436 | 3.2:-74318295 | MS.gene052189:intron |
| CGGAACAGTAATGCATTGCT+GGG | 0.559446 | 3.2:-74319643 | MS.gene052189:CDS |
| ACATGACCGTGTATTCCCAT+TGG | 0.568456 | 3.2:-74318318 | MS.gene052189:CDS |
| TCTTGTTTAGACCCTGTGAA+AGG | 0.569255 | 3.2:+74318063 | None:intergenic |
| GTTCCATTGCCACATTGCGT+TGG | 0.569835 | 3.2:+74319563 | None:intergenic |
| GTGTAGACATGTGGGAGAGA+AGG | 0.571546 | 3.2:-74318178 | MS.gene052189:intron |
| CTGCAATGGGTAGTAGCAGA+TGG | 0.575573 | 3.2:-74319752 | None:intergenic |
| GTTGACGCCGGAAATGATGA+AGG | 0.583198 | 3.2:-74319211 | MS.gene052189:CDS |
| AAAGTGTGTTATGCGTGTGC+TGG | 0.589062 | 3.2:-74319433 | MS.gene052189:CDS |
| TCTCCCCATATAATTTGCAT+AGG | 0.590154 | 3.2:+74318341 | None:intergenic |
| TAGTGGTAATTGAGGATGCA+GGG | 0.590969 | 3.2:-74318149 | MS.gene052189:CDS |
| GTTTCCGGAGAAGGTGGAGA+AGG | 0.596406 | 3.2:-74319334 | MS.gene052189:CDS |
| AAACAAGAAAACCATAGCAA+TGG | 0.598116 | 3.2:-74318048 | MS.gene052189:CDS |
| ACAATCTTGTGTAGACATGT+GGG | 0.601493 | 3.2:-74318186 | MS.gene052189:intron |
| ACCACCACCGATCTCGGTGA+CGG | 0.602168 | 3.2:-74319663 | MS.gene052189:CDS |
| TCCGGAGAAGGTGGAGAAGG+TGG | 0.602961 | 3.2:-74319331 | MS.gene052189:CDS |
| GCGTGTGCTGGAGGGTCATG+GGG | 0.604598 | 3.2:-74319421 | MS.gene052189:CDS |
| GGCGATGTTTCCGGAGAAGG+TGG | 0.606091 | 3.2:-74319340 | MS.gene052189:CDS |
| ATTAAGAAACCAATTAGGCA+AGG | 0.609454 | 3.2:+74319152 | None:intergenic |
| CTAATTCCAATGGGAATACA+CGG | 0.614350 | 3.2:+74318312 | None:intergenic |
| GGAGAAGGTGGAGAAGGTGG+TGG | 0.617666 | 3.2:-74319328 | MS.gene052189:CDS |
| GGGAGAGAAGGCACAGCTAG+TGG | 0.618662 | 3.2:-74318166 | MS.gene052189:CDS |
| TGTGAAAGGATCAATGAGGA+AGG | 0.624747 | 3.2:+74318077 | None:intergenic |
| CTGGTACGTAAACATTGAAG+TGG | 0.628983 | 3.2:+74319517 | None:intergenic |
| CCATGGATGAGTATAAGAGA+AGG | 0.631829 | 3.2:+74319594 | None:intergenic |
| TGTGTTATGCGTGTGCTGGA+GGG | 0.633000 | 3.2:-74319429 | MS.gene052189:CDS |
| GATGTGTATAGAGTACCGAC+AGG | 0.634934 | 3.2:-74318513 | MS.gene052189:CDS |
| CGGATTTAGAGAAGGAGTAA+CGG | 0.643850 | 3.2:+74319697 | None:intergenic |
| TAATCTACCTAAGATTACAC+AGG | 0.647224 | 3.2:-74318444 | MS.gene052189:intron |
| TCAAGTGAAAAGTGTTGATG+AGG | 0.651064 | 3.2:-74319253 | MS.gene052189:CDS |
| GCCGGAAATGATGAAGGAGT+TGG | 0.652799 | 3.2:-74319205 | MS.gene052189:CDS |
| GAATCGGAGCCAACGCAATG+TGG | 0.653276 | 3.2:-74319572 | MS.gene052189:CDS |
| CAGCCTATGCAAATTATATG+GGG | 0.655829 | 3.2:-74318344 | MS.gene052189:CDS |
| TCACAACATTGTGTAACTGG+TGG | 0.660678 | 3.2:-74319722 | MS.gene052189:CDS |
| TGTTCCGTCACCGAGATCGG+TGG | 0.695200 | 3.2:+74319659 | None:intergenic |
| GTATAGAGTACCGACAGGAG+AGG | 0.704776 | 3.2:-74318508 | MS.gene052189:CDS |
| GTTTGTGGGGTATAGTATGG+CGG | 0.726700 | 3.2:-74319361 | MS.gene052189:CDS |
| ACCCTGTGAAAGGATCAATG+AGG | 0.763295 | 3.2:+74318073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAACAATTAAACAAG+GGG | + | chr3.2:74319121-74319140 | None:intergenic | 15.0% |
| !! | CAAATTAAACAATTAAACAA+GGG | + | chr3.2:74319122-74319141 | None:intergenic | 15.0% |
| !! | TAATGAAATTCAAAATAATC+AGG | + | chr3.2:74319570-74319589 | None:intergenic | 15.0% |
| !!! | ATTTCTATTTTGAGATAATT+TGG | - | chr3.2:74319375-74319394 | MS.gene052189:CDS | 15.0% |
| !!! | GTCATTTTCTTAAATTATTA+CGG | + | chr3.2:74318809-74318828 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTAAATTATTAC+GGG | + | chr3.2:74318808-74318827 | None:intergenic | 15.0% |
| !! | AAATCATTAAGAAACCAATT+AGG | + | chr3.2:74318635-74318654 | None:intergenic | 20.0% |
| !! | AAATTCTTGTACATTTCTTT+GGG | + | chr3.2:74319677-74319696 | None:intergenic | 20.0% |
| !! | GCAAATTAAACAATTAAACA+AGG | + | chr3.2:74319123-74319142 | None:intergenic | 20.0% |
| ! | CAAATTCTTGTACATTTCTT+TGG | + | chr3.2:74319678-74319697 | None:intergenic | 25.0% |
| ! | CTAAAAATTAAGACAAGTGA+TGG | + | chr3.2:74319231-74319250 | None:intergenic | 25.0% |
| AAACAAACCTGTGTAATCTT+AGG | + | chr3.2:74319345-74319364 | None:intergenic | 30.0% | |
| AAACAAGAAAACCATAGCAA+TGG | - | chr3.2:74319731-74319750 | MS.gene052189:CDS | 30.0% | |
| AAATTACCCTTTCAATCTGT+GGG | + | chr3.2:74319493-74319512 | None:intergenic | 30.0% | |
| ATTAAGAAACCAATTAGGCA+AGG | + | chr3.2:74318630-74318649 | None:intergenic | 30.0% | |
| GTTTAATAGTTGAAGATGCA+TGG | - | chr3.2:74318958-74318977 | MS.gene052189:intron | 30.0% | |
| TAAATTACCCTTTCAATCTG+TGG | + | chr3.2:74319494-74319513 | None:intergenic | 30.0% | |
| TAATCTACCTAAGATTACAC+AGG | - | chr3.2:74319335-74319354 | MS.gene052189:CDS | 30.0% | |
| TACTTGTAAGACATGTGTTT+AGG | - | chr3.2:74319043-74319062 | MS.gene052189:intron | 30.0% | |
| ! | AAAATTGTTCCATCTAGTTC+AGG | - | chr3.2:74319004-74319023 | MS.gene052189:intron | 30.0% |
| !! | TGTGTTTTTGAGCTGTTTTA+GGG | + | chr3.2:74318163-74318182 | None:intergenic | 30.0% |
| !! | TTGTGTTTTTGAGCTGTTTT+AGG | + | chr3.2:74318164-74318183 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTCTACCCTTGT+AGG | - | chr3.2:74319242-74319261 | MS.gene052189:CDS | 30.0% |
| AAACATATGTGCTACAGAGT+TGG | - | chr3.2:74318903-74318922 | MS.gene052189:intron | 35.0% | |
| AAGATAGGGATATGGATGAT+GGG | - | chr3.2:74318498-74318517 | MS.gene052189:CDS | 35.0% | |
| AAGTAGTGGCAGTTAAGTTT+AGG | - | chr3.2:74319091-74319110 | MS.gene052189:intron | 35.0% | |
| AATAGTTGAAGATGCATGGT+TGG | - | chr3.2:74318962-74318981 | MS.gene052189:intron | 35.0% | |
| AATTAGCCCACAGATTGAAA+GGG | - | chr3.2:74319484-74319503 | MS.gene052189:CDS | 35.0% | |
| ACAATCTTGTGTAGACATGT+GGG | - | chr3.2:74319593-74319612 | MS.gene052189:CDS | 35.0% | |
| ACTAATCCAAGCACTTCATA+AGG | - | chr3.2:74319299-74319318 | MS.gene052189:CDS | 35.0% | |
| AGCAGCCTATGCAAATTATA+TGG | - | chr3.2:74319433-74319452 | MS.gene052189:CDS | 35.0% | |
| CAGCCTATGCAAATTATATG+GGG | - | chr3.2:74319435-74319454 | MS.gene052189:CDS | 35.0% | |
| CATAGGCTGCTTCATTAAAA+AGG | + | chr3.2:74319424-74319443 | None:intergenic | 35.0% | |
| CATATGTGTTAGTGTTGTGT+TGG | - | chr3.2:74318844-74318863 | MS.gene052189:intron | 35.0% | |
| CATTGTATTCCTGAACTAGA+TGG | + | chr3.2:74319016-74319035 | None:intergenic | 35.0% | |
| CTAATTCCAATGGGAATACA+CGG | + | chr3.2:74319470-74319489 | None:intergenic | 35.0% | |
| CTTATACTCATCCATGGAAT+CGG | - | chr3.2:74318191-74318210 | MS.gene052189:intron | 35.0% | |
| GCAGCCTATGCAAATTATAT+GGG | - | chr3.2:74319434-74319453 | MS.gene052189:CDS | 35.0% | |
| TACAATCTTGTGTAGACATG+TGG | - | chr3.2:74319592-74319611 | MS.gene052189:CDS | 35.0% | |
| TCTATACACATCACCTACAA+GGG | + | chr3.2:74319258-74319277 | None:intergenic | 35.0% | |
| TCTCCAAAGAAAATCAAGTC+TGG | + | chr3.2:74318284-74318303 | None:intergenic | 35.0% | |
| TTATGTCTGTGACAATGACT+CGG | - | chr3.2:74318757-74318776 | MS.gene052189:intron | 35.0% | |
| TTGTTTGGAAGATAGGGATA+TGG | - | chr3.2:74318490-74318509 | MS.gene052189:CDS | 35.0% | |
| ! | AGGAGTTTGTTTGGAAGATA+GGG | - | chr3.2:74318484-74318503 | MS.gene052189:CDS | 35.0% |
| ! | AGGTTAGCTATACTAAGTAG+TGG | - | chr3.2:74319077-74319096 | MS.gene052189:intron | 35.0% |
| ! | GTACCAGACTTGATTTTCTT+TGG | - | chr3.2:74318278-74318297 | MS.gene052189:intron | 35.0% |
| ! | TCTCCCCATATAATTTGCAT+AGG | + | chr3.2:74319441-74319460 | None:intergenic | 35.0% |
| ! | TTCTATCCTTATGAAGTGCT+TGG | + | chr3.2:74319308-74319327 | None:intergenic | 35.0% |
| !! | GTGTTTAGGTGATAGTTTTG+AGG | - | chr3.2:74319057-74319076 | MS.gene052189:intron | 35.0% |
| !! | TCAAGTGAAAAGTGTTGATG+AGG | - | chr3.2:74318526-74318545 | MS.gene052189:intron | 35.0% |
| !!! | GTTTTTTCTGAATGTGTGTC+TGG | - | chr3.2:74318669-74318688 | MS.gene052189:intron | 35.0% |
| ACCAACTCCTTCATCATTTC+CGG | + | chr3.2:74318578-74318597 | None:intergenic | 40.0% | |
| CCAACTTATGACCATTGCTA+TGG | + | chr3.2:74319745-74319764 | None:intergenic | 40.0% | |
| CCATAGCAATGGTCATAAGT+TGG | - | chr3.2:74319742-74319761 | MS.gene052189:CDS | 40.0% | |
| CCATGGATGAGTATAAGAGA+AGG | + | chr3.2:74318188-74318207 | None:intergenic | 40.0% | |
| CCTTCTCTTATACTCATCCA+TGG | - | chr3.2:74318185-74318204 | MS.gene052189:intron | 40.0% | |
| CGGATTTAGAGAAGGAGTAA+CGG | + | chr3.2:74318085-74318104 | None:intergenic | 40.0% | |
| CGTTACTCCTTCTCTAAATC+CGG | - | chr3.2:74318083-74318102 | MS.gene052189:CDS | 40.0% | |
| CTCTATACACATCACCTACA+AGG | + | chr3.2:74319259-74319278 | None:intergenic | 40.0% | |
| CTGGTACGTAAACATTGAAG+TGG | + | chr3.2:74318265-74318284 | None:intergenic | 40.0% | |
| GAAGATAGGGATATGGATGA+TGG | - | chr3.2:74318497-74318516 | MS.gene052189:CDS | 40.0% | |
| GAATTAGCCCACAGATTGAA+AGG | - | chr3.2:74319483-74319502 | MS.gene052189:CDS | 40.0% | |
| GCTTCACAACATTGTGTAAC+TGG | - | chr3.2:74318054-74318073 | MS.gene052189:CDS | 40.0% | |
| TAGTGGCAGTTAAGTTTAGG+AGG | - | chr3.2:74319094-74319113 | MS.gene052189:intron | 40.0% | |
| TAGTGGTAATTGAGGATGCA+GGG | - | chr3.2:74319630-74319649 | MS.gene052189:CDS | 40.0% | |
| TCACAACATTGTGTAACTGG+TGG | - | chr3.2:74318057-74318076 | MS.gene052189:CDS | 40.0% | |
| TCCTCATTGATCCTTTCACA+GGG | - | chr3.2:74319705-74319724 | MS.gene052189:CDS | 40.0% | |
| TGTGAAAGGATCAATGAGGA+AGG | + | chr3.2:74319705-74319724 | None:intergenic | 40.0% | |
| TTCCTCATTGATCCTTTCAC+AGG | - | chr3.2:74319704-74319723 | MS.gene052189:CDS | 40.0% | |
| ! | AATCTGTGGGCTAATTCCAA+TGG | + | chr3.2:74319480-74319499 | None:intergenic | 40.0% |
| ! | ATCTGTGGGCTAATTCCAAT+GGG | + | chr3.2:74319479-74319498 | None:intergenic | 40.0% |
| ! | CAGGAGTTTGTTTGGAAGAT+AGG | - | chr3.2:74318483-74318502 | MS.gene052189:CDS | 40.0% |
| ! | GATTTGTGCAGGAGTTTGTT+TGG | - | chr3.2:74318475-74318494 | MS.gene052189:CDS | 40.0% |
| ! | TCTTGTTTAGACCCTGTGAA+AGG | + | chr3.2:74319719-74319738 | None:intergenic | 40.0% |
| ! | TGTTAGTGTTGTGTTGGCAT+CGG | - | chr3.2:74318850-74318869 | MS.gene052189:intron | 40.0% |
| ! | TTAGTTCTTTCCTCTCCTGT+CGG | + | chr3.2:74319284-74319303 | None:intergenic | 40.0% |
| ! | TTTTAGGCCGGATTTAGAGA+AGG | + | chr3.2:74318093-74318112 | None:intergenic | 40.0% |
| AAAGTGTGTTATGCGTGTGC+TGG | - | chr3.2:74318346-74318365 | MS.gene052189:intron | 45.0% | |
| AAATCAACCACCACCGATCT+CGG | - | chr3.2:74318110-74318129 | MS.gene052189:CDS | 45.0% | |
| ACATGACCGTGTATTCCCAT+TGG | - | chr3.2:74319461-74319480 | MS.gene052189:CDS | 45.0% | |
| ACCCTGTGAAAGGATCAATG+AGG | + | chr3.2:74319709-74319728 | None:intergenic | 45.0% | |
| ACGGAACAGTAATGCATTGC+TGG | - | chr3.2:74318135-74318154 | MS.gene052189:CDS | 45.0% | |
| CAATTAGGCAAGGACTTAGC+AGG | + | chr3.2:74318620-74318639 | None:intergenic | 45.0% | |
| CGGAACAGTAATGCATTGCT+GGG | - | chr3.2:74318136-74318155 | MS.gene052189:CDS | 45.0% | |
| CTACAGAGTTGGCGTTTCAT+AGG | - | chr3.2:74318914-74318933 | MS.gene052189:intron | 45.0% | |
| CTAGTGGTAATTGAGGATGC+AGG | - | chr3.2:74319629-74319648 | MS.gene052189:CDS | 45.0% | |
| CTGCTAAGTCCTTGCCTAAT+TGG | - | chr3.2:74318618-74318637 | MS.gene052189:intron | 45.0% | |
| GCACATATGTTTCCGATCGA+AGG | + | chr3.2:74318895-74318914 | None:intergenic | 45.0% | |
| GTTTGTGGGGTATAGTATGG+CGG | - | chr3.2:74318418-74318437 | MS.gene052189:intron | 45.0% | |
| TGAAACTGCTCCGATCTTTC+AGG | + | chr3.2:74318323-74318342 | None:intergenic | 45.0% | |
| TGGGTTTGTGGGGTATAGTA+TGG | - | chr3.2:74318415-74318434 | MS.gene052189:intron | 45.0% | |
| TTCATCATTTCCGGCGTCAA+CGG | + | chr3.2:74318569-74318588 | None:intergenic | 45.0% | |
| ! | GTTAGTGTTGTGTTGGCATC+GGG | - | chr3.2:74318851-74318870 | MS.gene052189:intron | 45.0% |
| !! | GATCGGTGGTGGTTGATTTT+AGG | + | chr3.2:74318109-74318128 | None:intergenic | 45.0% |
| !! | GATGTGTATAGAGTACCGAC+AGG | - | chr3.2:74319266-74319285 | MS.gene052189:CDS | 45.0% |
| !! | TTGAGCTATGGTGGGTTTGT+GGG | - | chr3.2:74318404-74318423 | MS.gene052189:intron | 45.0% |
| !! | CTAAAATTTAAAAATTAAAT+GGG | + | chr3.2:74319196-74319215 | None:intergenic | 5.0% |
| !!! | TCTAAAATTTAAAAATTAAA+TGG | + | chr3.2:74319197-74319216 | None:intergenic | 5.0% |
| CACGACCAGACCTGAAAGAT+CGG | - | chr3.2:74318310-74318329 | MS.gene052189:CDS | 50.0% | |
| GCCGGAAATGATGAAGGAGT+TGG | - | chr3.2:74318574-74318593 | MS.gene052189:intron | 50.0% | |
| GGCACAGCTAGTGGTAATTG+AGG | - | chr3.2:74319622-74319641 | MS.gene052189:CDS | 50.0% | |
| GTGTAGACATGTGGGAGAGA+AGG | - | chr3.2:74319601-74319620 | MS.gene052189:CDS | 50.0% | |
| GTTCCATTGCCACATTGCGT+TGG | + | chr3.2:74318219-74318238 | None:intergenic | 50.0% | |
| GTTGACGCCGGAAATGATGA+AGG | - | chr3.2:74318568-74318587 | MS.gene052189:intron | 50.0% | |
| TACTGTTCCGTCACCGAGAT+CGG | + | chr3.2:74318126-74318145 | None:intergenic | 50.0% | |
| TAGTATGGCGGCGATGTTTC+CGG | - | chr3.2:74318430-74318449 | MS.gene052189:intron | 50.0% | |
| TGTGTTATGCGTGTGCTGGA+GGG | - | chr3.2:74318350-74318369 | MS.gene052189:intron | 50.0% | |
| ! | AAGGTGGTGGTGATTTGTGC+AGG | - | chr3.2:74318464-74318483 | MS.gene052189:CDS | 50.0% |
| ! | TTTCCGATCGAAGGTGTGTC+CGG | + | chr3.2:74318886-74318905 | None:intergenic | 50.0% |
| !! | ATGGTGGTTGGGTTGAGCTA+TGG | - | chr3.2:74318392-74318411 | MS.gene052189:intron | 50.0% |
| !! | GGTGGTGGTTGATTTTAGGC+CGG | + | chr3.2:74318105-74318124 | None:intergenic | 50.0% |
| !! | GTATAGAGTACCGACAGGAG+AGG | - | chr3.2:74319271-74319290 | MS.gene052189:CDS | 50.0% |
| !! | GTTGAGCTATGGTGGGTTTG+TGG | - | chr3.2:74318403-74318422 | MS.gene052189:intron | 50.0% |
| !! | TGAGCTATGGTGGGTTTGTG+GGG | - | chr3.2:74318405-74318424 | MS.gene052189:intron | 50.0% |
| !! | TGAGGGAGATGATGGTGGTT+GGG | - | chr3.2:74318381-74318400 | MS.gene052189:intron | 50.0% |
| !! | TGGTTGGGTTGAGCTATGGT+GGG | - | chr3.2:74318396-74318415 | MS.gene052189:intron | 50.0% |
| !! | TGTTTTGTTGCCGTTGACGC+CGG | - | chr3.2:74318556-74318575 | MS.gene052189:intron | 50.0% |
| ACCACCTTCTCCACCTTCTC+CGG | + | chr3.2:74318452-74318471 | None:intergenic | 55.0% | |
| AGTCCGGACACACCTTCGAT+CGG | - | chr3.2:74318880-74318899 | MS.gene052189:intron | 55.0% | |
| GAATCGGAGCCAACGCAATG+TGG | - | chr3.2:74318207-74318226 | MS.gene052189:intron | 55.0% | |
| GAGCCAACGCAATGTGGCAA+TGG | - | chr3.2:74318213-74318232 | MS.gene052189:intron | 55.0% | |
| GTGTGTTATGCGTGTGCTGG+AGG | - | chr3.2:74318349-74318368 | MS.gene052189:intron | 55.0% | |
| GTTTCCGGAGAAGGTGGAGA+AGG | - | chr3.2:74318445-74318464 | MS.gene052189:CDS | 55.0% | |
| TCATGGGGTGAGGGAGATGA+TGG | - | chr3.2:74318373-74318392 | MS.gene052189:intron | 55.0% | |
| TTGAAGTGGCGTGTGAGCTC+AGG | + | chr3.2:74318251-74318270 | None:intergenic | 55.0% | |
| ! | CTGCTCCGATCTTTCAGGTC+TGG | + | chr3.2:74318318-74318337 | None:intergenic | 55.0% |
| ! | TGGCATCGGGCTCTATAGTC+CGG | - | chr3.2:74318864-74318883 | MS.gene052189:intron | 55.0% |
| !! | GTGAGGGAGATGATGGTGGT+TGG | - | chr3.2:74318380-74318399 | MS.gene052189:intron | 55.0% |
| !! | GTGGTTGGGTTGAGCTATGG+TGG | - | chr3.2:74318395-74318414 | MS.gene052189:intron | 55.0% |
| !! | TTGCGTTGGCTCCGATTCCA+TGG | + | chr3.2:74318205-74318224 | None:intergenic | 55.0% |
| ACCACCACCGATCTCGGTGA+CGG | - | chr3.2:74318116-74318135 | MS.gene052189:CDS | 60.0% | |
| ATGCGTGTGCTGGAGGGTCA+TGG | - | chr3.2:74318356-74318375 | MS.gene052189:intron | 60.0% | |
| GGAGAAGGTGGAGAAGGTGG+TGG | - | chr3.2:74318451-74318470 | MS.gene052189:CDS | 60.0% | |
| GGCGATGTTTCCGGAGAAGG+TGG | - | chr3.2:74318439-74318458 | MS.gene052189:intron | 60.0% | |
| TCCGGAGAAGGTGGAGAAGG+TGG | - | chr3.2:74318448-74318467 | MS.gene052189:CDS | 60.0% | |
| TGCGTGTGCTGGAGGGTCAT+GGG | - | chr3.2:74318357-74318376 | MS.gene052189:intron | 60.0% | |
| TGTTCCGTCACCGAGATCGG+TGG | + | chr3.2:74318123-74318142 | None:intergenic | 60.0% | |
| ! | GGGAGAGAAGGCACAGCTAG+TGG | - | chr3.2:74319613-74319632 | MS.gene052189:CDS | 60.0% |
| ! | TGGGGTGAGGGAGATGATGG+TGG | - | chr3.2:74318376-74318395 | MS.gene052189:intron | 60.0% |
| GCGTGTGCTGGAGGGTCATG+GGG | - | chr3.2:74318358-74318377 | MS.gene052189:intron | 65.0% | |
| GCTGGAGGGTCATGGGGTGA+GGG | - | chr3.2:74318364-74318383 | MS.gene052189:intron | 65.0% | |
| GGCGGCGATGTTTCCGGAGA+AGG | - | chr3.2:74318436-74318455 | MS.gene052189:intron | 65.0% | |
| TCCGTCACCGAGATCGGTGG+TGG | + | chr3.2:74318120-74318139 | None:intergenic | 65.0% | |
| TGCTGGAGGGTCATGGGGTG+AGG | - | chr3.2:74318363-74318382 | MS.gene052189:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 74318032 | 74319769 | 74318032 | ID=MS.gene052189 |
| chr3.2 | mRNA | 74318032 | 74319769 | 74318032 | ID=MS.gene052189.t1;Parent=MS.gene052189 |
| chr3.2 | exon | 74319140 | 74319769 | 74319140 | ID=MS.gene052189.t1.exon1;Parent=MS.gene052189.t1 |
| chr3.2 | CDS | 74319140 | 74319769 | 74319140 | ID=cds.MS.gene052189.t1;Parent=MS.gene052189.t1 |
| chr3.2 | exon | 74318445 | 74318537 | 74318445 | ID=MS.gene052189.t1.exon2;Parent=MS.gene052189.t1 |
| chr3.2 | CDS | 74318445 | 74318537 | 74318445 | ID=cds.MS.gene052189.t1;Parent=MS.gene052189.t1 |
| chr3.2 | exon | 74318296 | 74318363 | 74318296 | ID=MS.gene052189.t1.exon3;Parent=MS.gene052189.t1 |
| chr3.2 | CDS | 74318296 | 74318363 | 74318296 | ID=cds.MS.gene052189.t1;Parent=MS.gene052189.t1 |
| chr3.2 | exon | 74318032 | 74318194 | 74318032 | ID=MS.gene052189.t1.exon4;Parent=MS.gene052189.t1 |
| chr3.2 | CDS | 74318032 | 74318194 | 74318032 | ID=cds.MS.gene052189.t1;Parent=MS.gene052189.t1 |
| Gene Sequence |
| Protein sequence |
