Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061773.t1 | XP_013442186.1 | 92.8 | 474 | 2 | 3 | 1 | 442 | 118 | 591 | 4.10E-244 | 853.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061773.t1 | Q6DGE9 | 37.5 | 88 | 52 | 1 | 259 | 346 | 12 | 96 | 6.2e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061773.t1 | A0A072TG43 | 92.8 | 474 | 2 | 3 | 1 | 442 | 118 | 591 | 3.0e-244 | 853.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene061773 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene061773 | 0.830849 | 2.33E-55 | -1.69E-46 |
| MS.gene04985 | MS.gene061773 | 0.816291 | 5.96E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene061773 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene061773 | 0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene061773 | 0.829166 | 5.99E-55 | -1.69E-46 |
| MS.gene050310 | MS.gene061773 | 0.820562 | 6.42E-53 | -1.69E-46 |
| MS.gene050864 | MS.gene061773 | 0.822746 | 2.01E-53 | -1.69E-46 |
| MS.gene051067 | MS.gene061773 | 0.814884 | 1.23E-51 | -1.69E-46 |
| MS.gene051263 | MS.gene061773 | 0.813245 | 2.82E-51 | -1.69E-46 |
| MS.gene051478 | MS.gene061773 | 0.817265 | 3.61E-52 | -1.69E-46 |
| MS.gene051648 | MS.gene061773 | 0.866782 | 2.22E-65 | -1.69E-46 |
| MS.gene051885 | MS.gene061773 | 0.834574 | 2.77E-56 | -1.69E-46 |
| MS.gene052150 | MS.gene061773 | 0.825716 | 4.03E-54 | -1.69E-46 |
| MS.gene052151 | MS.gene061773 | 0.822115 | 2.81E-53 | -1.69E-46 |
| MS.gene052155 | MS.gene061773 | -0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene052189 | MS.gene061773 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene053143 | MS.gene061773 | 0.812476 | 4.16E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene061773 | 0.820843 | 5.54E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene061773 | 0.860806 | 1.60E-63 | -1.69E-46 |
| MS.gene053538 | MS.gene061773 | 0.863552 | 2.30E-64 | -1.69E-46 |
| MS.gene054584 | MS.gene061773 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene061773 | 0.807019 | 6.20E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene061773 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene054999 | MS.gene061773 | 0.849829 | 2.51E-60 | -1.69E-46 |
| MS.gene055251 | MS.gene061773 | 0.833085 | 6.53E-56 | -1.69E-46 |
| MS.gene055331 | MS.gene061773 | 0.861992 | 6.95E-64 | -1.69E-46 |
| MS.gene055537 | MS.gene061773 | 0.813502 | 2.48E-51 | -1.69E-46 |
| MS.gene055764 | MS.gene061773 | 0.840131 | 1.05E-57 | -1.69E-46 |
| MS.gene056228 | MS.gene061773 | 0.801904 | 7.23E-49 | -1.69E-46 |
| MS.gene057082 | MS.gene061773 | 0.811833 | 5.74E-51 | -1.69E-46 |
| MS.gene058210 | MS.gene061773 | 0.832267 | 1.04E-55 | -1.69E-46 |
| MS.gene058386 | MS.gene061773 | 0.810191 | 1.30E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene061773 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene061773 | 0.843288 | 1.54E-58 | -1.69E-46 |
| MS.gene059424 | MS.gene061773 | 0.857591 | 1.47E-62 | -1.69E-46 |
| MS.gene05970 | MS.gene061773 | 0.812743 | 3.64E-51 | -1.69E-46 |
| MS.gene05971 | MS.gene061773 | 0.816526 | 5.29E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene061773 | 0.837988 | 3.75E-57 | -1.69E-46 |
| MS.gene06042 | MS.gene061773 | 0.802277 | 6.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 115 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATCTGGAAATATTTC+TGG | 0.102747 | 4.1:+10217289 | MS.gene061773:CDS |
| TTTACCTTGTGACATGTATT+TGG | 0.181144 | 4.1:-10216265 | None:intergenic |
| AACTAATCGCTCAGCGTAAT+CGG | 0.242598 | 4.1:-10217623 | None:intergenic |
| GTTAGCAAAAGAAAGTTTAT+TGG | 0.248766 | 4.1:+10217528 | MS.gene061773:CDS |
| CCAAGGAACTCATTGCTAAT+TGG | 0.253973 | 4.1:-10215825 | None:intergenic |
| TGCTCGCCTCCAGAGACTTT+TGG | 0.259141 | 4.1:-10217485 | None:intergenic |
| CACCACCGTCACCCTGATTA+TGG | 0.279873 | 4.1:-10217705 | None:intergenic |
| GTTCGAAGCAGAGATTAAAA+TGG | 0.285308 | 4.1:+10217188 | MS.gene061773:CDS |
| GAGAACAACTCTCTCCTTCT+TGG | 0.301124 | 4.1:-10217359 | None:intergenic |
| TGGCTATTGATTGTCTTCTA+TGG | 0.301791 | 4.1:+10216230 | MS.gene061773:CDS |
| GACAGCTAGTGAAAGTGATA+TGG | 0.315697 | 4.1:+10217765 | MS.gene061773:CDS |
| GCATGGTGGCGTCCATAATC+AGG | 0.330107 | 4.1:+10217693 | MS.gene061773:CDS |
| CTTAATATGTAGATCTTCCT+TGG | 0.340124 | 4.1:-10217224 | None:intergenic |
| TTCAGATGATTGGCAGTATA+TGG | 0.344104 | 4.1:+10216210 | MS.gene061773:CDS |
| TTTACCAATATGTTGATAGA+AGG | 0.350454 | 4.1:+10215866 | MS.gene061773:CDS |
| GAGGGTAGCAGTTAGAGCTT+TGG | 0.371302 | 4.1:+10215732 | MS.gene061773:CDS |
| CGGCATGGGCGGTGTTGAAA+TGG | 0.381441 | 4.1:+10215918 | MS.gene061773:CDS |
| TTAGCCTTCTATCAACATAT+TGG | 0.382403 | 4.1:-10215870 | None:intergenic |
| GAAAATTCACCAGCTGGTAT+TGG | 0.383617 | 4.1:+10216094 | MS.gene061773:CDS |
| GTCTAGGAAGGCCGAGGAAT+GGG | 0.391308 | 4.1:+10215942 | MS.gene061773:CDS |
| AGGGTAGCAGTTAGAGCTTT+GGG | 0.392182 | 4.1:+10215733 | MS.gene061773:CDS |
| TTGCTCGCTCTTCAGATGAT+TGG | 0.408759 | 4.1:+10216200 | MS.gene061773:CDS |
| TTCTAAGAGGTAGGTTGACT+TGG | 0.413383 | 4.1:+10215701 | MS.gene061773:CDS |
| CTCGAGAATTTCACCGTGAC+TGG | 0.417747 | 4.1:-10215794 | None:intergenic |
| CCAATTAGCAATGAGTTCCT+TGG | 0.422140 | 4.1:+10215825 | MS.gene061773:CDS |
| CACAATGCTTCAATAATTCC+AGG | 0.425354 | 4.1:-10216172 | None:intergenic |
| ACTAATCGCTCAGCGTAATC+GGG | 0.426153 | 4.1:-10217622 | None:intergenic |
| ATCGTCATGCCAAAAGTCTC+TGG | 0.426995 | 4.1:+10217476 | MS.gene061773:CDS |
| AAATATTTCCAGATGAGAAA+AGG | 0.437915 | 4.1:-10217285 | None:intergenic |
| TGCACGGGTAGCATCACTTA+TGG | 0.449721 | 4.1:-10217431 | None:intergenic |
| GGACCTGTTGCTAGTTGCCC+TGG | 0.461427 | 4.1:+10216154 | MS.gene061773:CDS |
| GGTGACGGTGGTGATATATA+TGG | 0.463445 | 4.1:+10217715 | MS.gene061773:CDS |
| GAGTTGTTCTCTATAGCAAT+CGG | 0.470290 | 4.1:+10217371 | MS.gene061773:CDS |
| CCTTTAGTTGAGCTTCTAAG+AGG | 0.473520 | 4.1:+10215688 | MS.gene061773:CDS |
| TATGTAGGTAATTGATAAAG+TGG | 0.475329 | 4.1:+10217005 | MS.gene061773:intron |
| GCACTGGTTGTCAAGCTTGA+AGG | 0.477662 | 4.1:+10217256 | MS.gene061773:CDS |
| AATATTTCCAGATGAGAAAA+GGG | 0.478637 | 4.1:-10217284 | None:intergenic |
| GTTAATGAAAATTCACCAGC+TGG | 0.484392 | 4.1:+10216088 | MS.gene061773:CDS |
| TTCGAAGCAGAGATTAAAAT+GGG | 0.485000 | 4.1:+10217189 | MS.gene061773:CDS |
| AGAGATCAGGATCATTTGAC+TGG | 0.487652 | 4.1:-10217579 | None:intergenic |
| TATTAAGCAGGCTGCAGCAC+TGG | 0.488628 | 4.1:+10217240 | MS.gene061773:CDS |
| ATTCCAGGGCAACTAGCAAC+AGG | 0.491637 | 4.1:-10216157 | None:intergenic |
| CATTCCGAGTCATCAGTCTC+TGG | 0.491761 | 4.1:-10217739 | None:intergenic |
| TTAATATGTAGATCTTCCTT+GGG | 0.495234 | 4.1:-10217223 | None:intergenic |
| GGGCTAGCCAACTGCAATGT+TGG | 0.498049 | 4.1:+10215962 | MS.gene061773:CDS |
| ACAATTTGTCATCAGAAGCT+TGG | 0.499520 | 4.1:+10216127 | MS.gene061773:CDS |
| GAAAGTGATATGGGAAATGA+TGG | 0.499970 | 4.1:+10217775 | MS.gene061773:CDS |
| TGATCTTCTTACACGCGGCA+TGG | 0.501426 | 4.1:+10215903 | MS.gene061773:CDS |
| AGAGACTGATGACTCGGAAT+GGG | 0.505401 | 4.1:+10217741 | MS.gene061773:CDS |
| ACAGCTAGTGAAAGTGATAT+GGG | 0.510559 | 4.1:+10217766 | MS.gene061773:CDS |
| CTCTCCTTCTTGGATCTCAT+AGG | 0.510858 | 4.1:-10217349 | None:intergenic |
| TTCACCGTGACTGGCTAAAG+TGG | 0.511711 | 4.1:-10215785 | None:intergenic |
| GGCTAAAGTGGGAAAAGTGC+TGG | 0.517032 | 4.1:-10215773 | None:intergenic |
| GTTGACTTGGGTTGAGCAGA+GGG | 0.523039 | 4.1:+10215714 | MS.gene061773:CDS |
| CAGAGACTGATGACTCGGAA+TGG | 0.524761 | 4.1:+10217740 | MS.gene061773:CDS |
| AGAAGCAGATGCGTGCTGCT+TGG | 0.530091 | 4.1:+10217647 | MS.gene061773:CDS |
| CTTAATAAGCCAATACCAGC+TGG | 0.532024 | 4.1:-10216103 | None:intergenic |
| GGAAGATCTACATATTAAGC+AGG | 0.534911 | 4.1:+10217228 | MS.gene061773:CDS |
| TTTGTCATCAGAAGCTTGGT+AGG | 0.539277 | 4.1:+10216131 | MS.gene061773:CDS |
| GCACAAGCTTATGACATGCT+AGG | 0.540972 | 4.1:+10217505 | MS.gene061773:CDS |
| CTTCTTACACGCGGCATGGG+CGG | 0.541650 | 4.1:+10215907 | MS.gene061773:CDS |
| TCCGCAAGGTCAACTAATGC+AGG | 0.542050 | 4.1:-10217030 | None:intergenic |
| CCTCTTAGAAGCTCAACTAA+AGG | 0.542272 | 4.1:-10215688 | None:intergenic |
| GATCTTCTTACACGCGGCAT+GGG | 0.543576 | 4.1:+10215904 | MS.gene061773:CDS |
| TCTAAGAGGTAGGTTGACTT+GGG | 0.544283 | 4.1:+10215702 | MS.gene061773:CDS |
| ATCAAAATACTCAGAAGCAT+TGG | 0.544343 | 4.1:+10217318 | MS.gene061773:CDS |
| GATATGGGAAATGATGGAAT+TGG | 0.544935 | 4.1:+10217781 | MS.gene061773:CDS |
| CACAAGCTTATGACATGCTA+GGG | 0.553569 | 4.1:+10217506 | MS.gene061773:CDS |
| TTGTCATCAGAAGCTTGGTA+GGG | 0.554096 | 4.1:+10216132 | MS.gene061773:CDS |
| TGCTGCTTGGTTATTTCGAG+AGG | 0.554603 | 4.1:+10217660 | MS.gene061773:CDS |
| TAACAAAACTACCTGGCATG+TGG | 0.556418 | 4.1:+10216056 | MS.gene061773:CDS |
| AACAAAACTACCTGGCATGT+GGG | 0.557380 | 4.1:+10216057 | MS.gene061773:CDS |
| ACAAGACCACCCCACATGCC+AGG | 0.559253 | 4.1:-10216067 | None:intergenic |
| AGTCTAGGAAGGCCGAGGAA+TGG | 0.560531 | 4.1:+10215941 | MS.gene061773:CDS |
| AGTTGTTCTCTATAGCAATC+GGG | 0.563923 | 4.1:+10217372 | MS.gene061773:CDS |
| TCGCACTAAAGAACAGATAG+AGG | 0.568924 | 4.1:+10217156 | MS.gene061773:CDS |
| CTTGCGGAGATTACAACTCT+AGG | 0.571036 | 4.1:+10217045 | MS.gene061773:CDS |
| ATCTTGAAGAACACTGACAA+TGG | 0.574244 | 4.1:-10217091 | None:intergenic |
| TGTCATCAGAAGCTTGGTAG+GGG | 0.574943 | 4.1:+10216133 | MS.gene061773:CDS |
| TAGTTGAGCTTCTAAGAGGT+AGG | 0.575441 | 4.1:+10215692 | MS.gene061773:CDS |
| GTCTGTGGAGACATAGTGCA+CGG | 0.575568 | 4.1:-10217447 | None:intergenic |
| GGCGTCCATAATCAGGGTGA+CGG | 0.576294 | 4.1:+10217700 | MS.gene061773:CDS |
| GCAGAAAGTTCTGTGCATGC+TGG | 0.577817 | 4.1:+10215655 | None:intergenic |
| CACTGTGATCTTCTTACACG+CGG | 0.580191 | 4.1:+10215898 | MS.gene061773:CDS |
| CGAGAGGCAGCTGTTAAGCA+TGG | 0.584903 | 4.1:+10217676 | MS.gene061773:CDS |
| GGTTGACTTGGGTTGAGCAG+AGG | 0.586421 | 4.1:+10215713 | MS.gene061773:CDS |
| CTTAGAAGCTCAACTAAAGG+AGG | 0.588830 | 4.1:-10215685 | None:intergenic |
| GAAGAGACCAACATTGCAGT+TGG | 0.590523 | 4.1:-10215969 | None:intergenic |
| CATGGTGGCGTCCATAATCA+GGG | 0.591600 | 4.1:+10217694 | MS.gene061773:CDS |
| GCGGTGTTGAAATGGAGTCT+AGG | 0.598414 | 4.1:+10215926 | MS.gene061773:CDS |
| CAGTTGGCTAGCCCATTCCT+CGG | 0.603223 | 4.1:-10215953 | None:intergenic |
| TGTTGAAATGGAGTCTAGGA+AGG | 0.605706 | 4.1:+10215930 | MS.gene061773:CDS |
| GTGTCCTATGAGATCCAAGA+AGG | 0.606913 | 4.1:+10217345 | MS.gene061773:CDS |
| ACAATGCTTCAATAATTCCA+GGG | 0.608618 | 4.1:-10216171 | None:intergenic |
| GTGTGAATAAACTATTTCCA+AGG | 0.609966 | 4.1:-10215842 | None:intergenic |
| TTTCCCACTTTAGCCAGTCA+CGG | 0.611995 | 4.1:+10215781 | MS.gene061773:CDS |
| ACAAAACTACCTGGCATGTG+GGG | 0.615879 | 4.1:+10216058 | MS.gene061773:CDS |
| AATGGAGTCTAGGAAGGCCG+AGG | 0.620005 | 4.1:+10215936 | MS.gene061773:CDS |
| GCATCACTTATGGCAGCCAA+AGG | 0.625977 | 4.1:-10217421 | None:intergenic |
| TCACCGTGACTGGCTAAAGT+GGG | 0.627571 | 4.1:-10215784 | None:intergenic |
| GAGATCAGGATCATTTGACT+GGG | 0.629493 | 4.1:-10217578 | None:intergenic |
| TGGTCCAGAGACTGATGACT+CGG | 0.634939 | 4.1:+10217735 | MS.gene061773:CDS |
| AAACTACCTGGCATGTGGGG+TGG | 0.640971 | 4.1:+10216061 | MS.gene061773:CDS |
| GAATTTCTAACAAAACTACC+TGG | 0.643669 | 4.1:+10216049 | MS.gene061773:CDS |
| ATGGGAAAAGAATATGCCCA+AGG | 0.649974 | 4.1:+10217207 | MS.gene061773:CDS |
| GTCCATAATCAGGGTGACGG+TGG | 0.652767 | 4.1:+10217703 | MS.gene061773:CDS |
| CTAGAGTTGTAATCTCCGCA+AGG | 0.661496 | 4.1:-10217044 | None:intergenic |
| GCCTGCATTAGTTGACCTTG+CGG | 0.662681 | 4.1:+10217029 | MS.gene061773:CDS |
| AGATCCAAATACATGTCACA+AGG | 0.671859 | 4.1:+10216261 | MS.gene061773:CDS |
| TCTGTGGAGACATAGTGCAC+GGG | 0.677330 | 4.1:-10217446 | None:intergenic |
| GAGGCAGCTGTTAAGCATGG+TGG | 0.678228 | 4.1:+10217679 | MS.gene061773:CDS |
| GTCATGCCAAAAGTCTCTGG+AGG | 0.684030 | 4.1:+10217479 | MS.gene061773:CDS |
| CATGACGATTGACAGGTCTG+TGG | 0.690518 | 4.1:-10217462 | None:intergenic |
| GGAATTGGCGATGATGACGA+CGG | 0.760960 | 4.1:+10217796 | MS.gene061773:CDS |
| ATGATCCTGATCTCTCACTG+AGG | 0.765682 | 4.1:+10217587 | MS.gene061773:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATATAAAACAAAGAA+AGG | - | chr4.1:10216704-10216723 | None:intergenic | 10.0% |
| !! | ATTCATTTAGAAATAAAAGT+AGG | + | chr4.1:10216519-10216538 | MS.gene061773:intron | 15.0% |
| ! | AAATATTTCCAGATGAGAAA+AGG | - | chr4.1:10217288-10217307 | None:intergenic | 25.0% |
| ! | AATATTTCCAGATGAGAAAA+GGG | - | chr4.1:10217287-10217306 | None:intergenic | 25.0% |
| ! | ATGAAAGCAATGATCAAATA+AGG | - | chr4.1:10216899-10216918 | None:intergenic | 25.0% |
| ! | CATCTAAAAACATTGATGTA+TGG | + | chr4.1:10216740-10216759 | MS.gene061773:intron | 25.0% |
| ! | GTTAGCAAAAGAAAGTTTAT+TGG | + | chr4.1:10217528-10217547 | MS.gene061773:CDS | 25.0% |
| ! | TATGTAGGTAATTGATAAAG+TGG | + | chr4.1:10217005-10217024 | MS.gene061773:intron | 25.0% |
| ! | TTAATATGTAGATCTTCCTT+GGG | - | chr4.1:10217226-10217245 | None:intergenic | 25.0% |
| !! | TTTACCAATATGTTGATAGA+AGG | + | chr4.1:10215866-10215885 | MS.gene061773:CDS | 25.0% |
| !!! | CAATGTTTTTAGATGTTCAA+TGG | - | chr4.1:10216735-10216754 | None:intergenic | 25.0% |
| !!! | TAATTGCTTTGCTTTTAAAC+CGG | + | chr4.1:10215999-10216018 | MS.gene061773:intron | 25.0% |
| AAAGCAATGATCAAATAAGG+AGG | - | chr4.1:10216896-10216915 | None:intergenic | 30.0% | |
| ACAATGCTTCAATAATTCCA+GGG | - | chr4.1:10216174-10216193 | None:intergenic | 30.0% | |
| AGAAATTCTATGCTTGCATA+TGG | - | chr4.1:10216037-10216056 | None:intergenic | 30.0% | |
| ATGTATATATCTCGTAGTGA+AGG | - | chr4.1:10216584-10216603 | None:intergenic | 30.0% | |
| ATTTGCACTCTTGAACATTA+AGG | + | chr4.1:10216351-10216370 | MS.gene061773:intron | 30.0% | |
| ATTTGTTTACTTTAACGCCT+TGG | + | chr4.1:10216975-10216994 | MS.gene061773:intron | 30.0% | |
| CTTAAACTTAGTTATCACTG+CGG | + | chr4.1:10216799-10216818 | MS.gene061773:intron | 30.0% | |
| CTTAATATGTAGATCTTCCT+TGG | - | chr4.1:10217227-10217246 | None:intergenic | 30.0% | |
| GAAAAGGAGAAAACAAAGAA+AGG | + | chr4.1:10216644-10216663 | MS.gene061773:intron | 30.0% | |
| GAATTTCTAACAAAACTACC+TGG | + | chr4.1:10216049-10216068 | MS.gene061773:CDS | 30.0% | |
| GTGTGAATAAACTATTTCCA+AGG | - | chr4.1:10215845-10215864 | None:intergenic | 30.0% | |
| TACCTACATAATATATGCCA+AGG | - | chr4.1:10216995-10217014 | None:intergenic | 30.0% | |
| TTCGAAGCAGAGATTAAAAT+GGG | + | chr4.1:10217189-10217208 | MS.gene061773:CDS | 30.0% | |
| TTCTCATCTGGAAATATTTC+TGG | + | chr4.1:10217289-10217308 | MS.gene061773:CDS | 30.0% | |
| TTTACCTTGTGACATGTATT+TGG | - | chr4.1:10216268-10216287 | None:intergenic | 30.0% | |
| ! | AAGAGTGCAAATGAATACAT+TGG | - | chr4.1:10216343-10216362 | None:intergenic | 30.0% |
| ! | ATCAAAATACTCAGAAGCAT+TGG | + | chr4.1:10217318-10217337 | MS.gene061773:CDS | 30.0% |
| ! | TTAGCCTTCTATCAACATAT+TGG | - | chr4.1:10215873-10215892 | None:intergenic | 30.0% |
| ! | TTCTGTTTCTTAGTGTGAAA+AGG | + | chr4.1:10216628-10216647 | MS.gene061773:intron | 30.0% |
| ACAATTTGTCATCAGAAGCT+TGG | + | chr4.1:10216127-10216146 | MS.gene061773:CDS | 35.0% | |
| ACAGCTAGTGAAAGTGATAT+GGG | + | chr4.1:10217766-10217785 | MS.gene061773:CDS | 35.0% | |
| AGATCCAAATACATGTCACA+AGG | + | chr4.1:10216261-10216280 | MS.gene061773:CDS | 35.0% | |
| AGTTGTTCTCTATAGCAATC+GGG | + | chr4.1:10217372-10217391 | MS.gene061773:CDS | 35.0% | |
| ATCTTGAAGAACACTGACAA+TGG | - | chr4.1:10217094-10217113 | None:intergenic | 35.0% | |
| ATTCTATGCTTGCATATGGT+AGG | - | chr4.1:10216033-10216052 | None:intergenic | 35.0% | |
| CACAATGCTTCAATAATTCC+AGG | - | chr4.1:10216175-10216194 | None:intergenic | 35.0% | |
| CATATGGTAGGAAGAAATTC+CGG | - | chr4.1:10216021-10216040 | None:intergenic | 35.0% | |
| CTAGGTGATCATAAAAAGCT+TGG | + | chr4.1:10217063-10217082 | MS.gene061773:CDS | 35.0% | |
| GAAAGTGATATGGGAAATGA+TGG | + | chr4.1:10217775-10217794 | MS.gene061773:CDS | 35.0% | |
| GAAATTGCTTAGCATGTGAA+TGG | + | chr4.1:10216465-10216484 | MS.gene061773:intron | 35.0% | |
| GAACAAATGCAAGGTTACAA+AGG | - | chr4.1:10216292-10216311 | None:intergenic | 35.0% | |
| GAGTTGTTCTCTATAGCAAT+CGG | + | chr4.1:10217371-10217390 | MS.gene061773:CDS | 35.0% | |
| GGAAGATCTACATATTAAGC+AGG | + | chr4.1:10217228-10217247 | MS.gene061773:CDS | 35.0% | |
| GTTAATGAAAATTCACCAGC+TGG | + | chr4.1:10216088-10216107 | MS.gene061773:CDS | 35.0% | |
| GTTCGAAGCAGAGATTAAAA+TGG | + | chr4.1:10217188-10217207 | MS.gene061773:CDS | 35.0% | |
| TAATGATTCAGCTCATGTGT+AGG | + | chr4.1:10216773-10216792 | MS.gene061773:intron | 35.0% | |
| TATATACATATCACACCGCT+TGG | + | chr4.1:10216595-10216614 | MS.gene061773:intron | 35.0% | |
| TTCAGATGATTGGCAGTATA+TGG | + | chr4.1:10216210-10216229 | MS.gene061773:CDS | 35.0% | |
| ! | GATATGGGAAATGATGGAAT+TGG | + | chr4.1:10217781-10217800 | MS.gene061773:CDS | 35.0% |
| ! | TCAGTCTGTAGCTTTTCATT+AGG | + | chr4.1:10216552-10216571 | MS.gene061773:intron | 35.0% |
| ! | TGGCTATTGATTGTCTTCTA+TGG | + | chr4.1:10216230-10216249 | MS.gene061773:CDS | 35.0% |
| AACAAAACTACCTGGCATGT+GGG | + | chr4.1:10216057-10216076 | MS.gene061773:CDS | 40.0% | |
| AACTAATCGCTCAGCGTAAT+CGG | - | chr4.1:10217626-10217645 | None:intergenic | 40.0% | |
| AAGATTGCATCGAGACACAA+GGG | + | chr4.1:10217109-10217128 | MS.gene061773:intron | 40.0% | |
| ACTGTTGAGTTCTCTTCACT+AGG | + | chr4.1:10216941-10216960 | MS.gene061773:intron | 40.0% | |
| AGAGATCAGGATCATTTGAC+TGG | - | chr4.1:10217582-10217601 | None:intergenic | 40.0% | |
| ATGGGAAAAGAATATGCCCA+AGG | + | chr4.1:10217207-10217226 | MS.gene061773:CDS | 40.0% | |
| CAAACATGTGAGTCCAAACA+TGG | - | chr4.1:10216835-10216854 | None:intergenic | 40.0% | |
| CACAAGCTTATGACATGCTA+GGG | + | chr4.1:10217506-10217525 | MS.gene061773:CDS | 40.0% | |
| CAGAAATATGTCACACCAAG+CGG | - | chr4.1:10216613-10216632 | None:intergenic | 40.0% | |
| CATGTTTGGACTCACATGTT+TGG | + | chr4.1:10216833-10216852 | MS.gene061773:intron | 40.0% | |
| CCAAGGAACTCATTGCTAAT+TGG | - | chr4.1:10215828-10215847 | None:intergenic | 40.0% | |
| CCAATTAGCAATGAGTTCCT+TGG | + | chr4.1:10215825-10215844 | MS.gene061773:CDS | 40.0% | |
| CCTCTTAGAAGCTCAACTAA+AGG | - | chr4.1:10215691-10215710 | None:intergenic | 40.0% | |
| CCTTTAGTTGAGCTTCTAAG+AGG | + | chr4.1:10215688-10215707 | MS.gene061773:CDS | 40.0% | |
| CGCCTTGGCATATATTATGT+AGG | + | chr4.1:10216990-10217009 | MS.gene061773:intron | 40.0% | |
| CTGTTGAGTTCTCTTCACTA+GGG | + | chr4.1:10216942-10216961 | MS.gene061773:intron | 40.0% | |
| CTTAATAAGCCAATACCAGC+TGG | - | chr4.1:10216106-10216125 | None:intergenic | 40.0% | |
| CTTAGAAGCTCAACTAAAGG+AGG | - | chr4.1:10215688-10215707 | None:intergenic | 40.0% | |
| GAAAATTCACCAGCTGGTAT+TGG | + | chr4.1:10216094-10216113 | MS.gene061773:CDS | 40.0% | |
| GACAGCTAGTGAAAGTGATA+TGG | + | chr4.1:10217765-10217784 | MS.gene061773:CDS | 40.0% | |
| GAGATCAGGATCATTTGACT+GGG | - | chr4.1:10217581-10217600 | None:intergenic | 40.0% | |
| TAACAAAACTACCTGGCATG+TGG | + | chr4.1:10216056-10216075 | MS.gene061773:CDS | 40.0% | |
| TCGCACTAAAGAACAGATAG+AGG | + | chr4.1:10217156-10217175 | MS.gene061773:CDS | 40.0% | |
| TGTAACCTTGCATTTGTTCC+TGG | + | chr4.1:10216293-10216312 | MS.gene061773:intron | 40.0% | |
| TGTTGAAATGGAGTCTAGGA+AGG | + | chr4.1:10215930-10215949 | MS.gene061773:CDS | 40.0% | |
| TTGTCATCAGAAGCTTGGTA+GGG | + | chr4.1:10216132-10216151 | MS.gene061773:CDS | 40.0% | |
| TTTGTCATCAGAAGCTTGGT+AGG | + | chr4.1:10216131-10216150 | MS.gene061773:CDS | 40.0% | |
| ! | GGAAATTCCCTTTTCTCATC+TGG | + | chr4.1:10217277-10217296 | MS.gene061773:CDS | 40.0% |
| ! | TAGTTGAGCTTCTAAGAGGT+AGG | + | chr4.1:10215692-10215711 | MS.gene061773:CDS | 40.0% |
| ! | TCTAAGAGGTAGGTTGACTT+GGG | + | chr4.1:10215702-10215721 | MS.gene061773:CDS | 40.0% |
| ! | TCTTTTGCTGCAACAACCTT+TGG | + | chr4.1:10217405-10217424 | MS.gene061773:CDS | 40.0% |
| ! | TTCTAAGAGGTAGGTTGACT+TGG | + | chr4.1:10215701-10215720 | MS.gene061773:CDS | 40.0% |
| ACAAAACTACCTGGCATGTG+GGG | + | chr4.1:10216058-10216077 | MS.gene061773:CDS | 45.0% | |
| ACAGTCTACAGAAATCGTGC+TGG | - | chr4.1:10216926-10216945 | None:intergenic | 45.0% | |
| ACTAATCGCTCAGCGTAATC+GGG | - | chr4.1:10217625-10217644 | None:intergenic | 45.0% | |
| AGGGTAGCAGTTAGAGCTTT+GGG | + | chr4.1:10215733-10215752 | MS.gene061773:CDS | 45.0% | |
| ATCGTCATGCCAAAAGTCTC+TGG | + | chr4.1:10217476-10217495 | MS.gene061773:CDS | 45.0% | |
| ATGATCCTGATCTCTCACTG+AGG | + | chr4.1:10217587-10217606 | MS.gene061773:CDS | 45.0% | |
| CAAGATTGCATCGAGACACA+AGG | + | chr4.1:10217108-10217127 | MS.gene061773:intron | 45.0% | |
| CACTGTGATCTTCTTACACG+CGG | + | chr4.1:10215898-10215917 | MS.gene061773:CDS | 45.0% | |
| CAGAACCAGGAACAAATGCA+AGG | - | chr4.1:10216301-10216320 | None:intergenic | 45.0% | |
| CGGCAATTGCTAACCATGTT+TGG | + | chr4.1:10216819-10216838 | MS.gene061773:intron | 45.0% | |
| CTAGAGTTGTAATCTCCGCA+AGG | - | chr4.1:10217047-10217066 | None:intergenic | 45.0% | |
| CTCTCCTTCTTGGATCTCAT+AGG | - | chr4.1:10217352-10217371 | None:intergenic | 45.0% | |
| CTGTCTTAGGCATGAATGCT+TGG | + | chr4.1:10216385-10216404 | MS.gene061773:intron | 45.0% | |
| CTTGCGGAGATTACAACTCT+AGG | + | chr4.1:10217045-10217064 | MS.gene061773:CDS | 45.0% | |
| GAAGAGACCAACATTGCAGT+TGG | - | chr4.1:10215972-10215991 | None:intergenic | 45.0% | |
| GAGAACAACTCTCTCCTTCT+TGG | - | chr4.1:10217362-10217381 | None:intergenic | 45.0% | |
| GCACAAGCTTATGACATGCT+AGG | + | chr4.1:10217505-10217524 | MS.gene061773:CDS | 45.0% | |
| GTGTCCTATGAGATCCAAGA+AGG | + | chr4.1:10217345-10217364 | MS.gene061773:CDS | 45.0% | |
| TGCTTGGCTTAGCATGTGAA+TGG | + | chr4.1:10216401-10216420 | MS.gene061773:intron | 45.0% | |
| TGTCATCAGAAGCTTGGTAG+GGG | + | chr4.1:10216133-10216152 | MS.gene061773:CDS | 45.0% | |
| TTGCTCGCTCTTCAGATGAT+TGG | + | chr4.1:10216200-10216219 | MS.gene061773:CDS | 45.0% | |
| TTTCCCACTTTAGCCAGTCA+CGG | + | chr4.1:10215781-10215800 | MS.gene061773:CDS | 45.0% | |
| ! | AGAGACTGATGACTCGGAAT+GGG | + | chr4.1:10217741-10217760 | MS.gene061773:CDS | 45.0% |
| ! | CTTTTGGCATGACGATTGAC+AGG | - | chr4.1:10217472-10217491 | None:intergenic | 45.0% |
| ! | GGAACTCTACTGACTGTCTT+AGG | + | chr4.1:10216372-10216391 | MS.gene061773:intron | 45.0% |
| ! | GGTGACGGTGGTGATATATA+TGG | + | chr4.1:10217715-10217734 | MS.gene061773:CDS | 45.0% |
| ! | TGCTGCTTGGTTATTTCGAG+AGG | + | chr4.1:10217660-10217679 | MS.gene061773:CDS | 45.0% |
| ! | TTTTGCCTCAGTGAGAGATC+AGG | - | chr4.1:10217595-10217614 | None:intergenic | 45.0% |
| ATTCCAGGGCAACTAGCAAC+AGG | - | chr4.1:10216160-10216179 | None:intergenic | 50.0% | |
| CATGACGATTGACAGGTCTG+TGG | - | chr4.1:10217465-10217484 | None:intergenic | 50.0% | |
| CATTCCGAGTCATCAGTCTC+TGG | - | chr4.1:10217742-10217761 | None:intergenic | 50.0% | |
| CCAGTTGAAGTAGCAGAACC+AGG | - | chr4.1:10216314-10216333 | None:intergenic | 50.0% | |
| CTCGAGAATTTCACCGTGAC+TGG | - | chr4.1:10215797-10215816 | None:intergenic | 50.0% | |
| GAGGGTAGCAGTTAGAGCTT+TGG | + | chr4.1:10215732-10215751 | MS.gene061773:CDS | 50.0% | |
| GATCTTCTTACACGCGGCAT+GGG | + | chr4.1:10215904-10215923 | MS.gene061773:CDS | 50.0% | |
| GCATCACTTATGGCAGCCAA+AGG | - | chr4.1:10217424-10217443 | None:intergenic | 50.0% | |
| GCCTGCATTAGTTGACCTTG+CGG | + | chr4.1:10217029-10217048 | MS.gene061773:CDS | 50.0% | |
| GTCATGCCAAAAGTCTCTGG+AGG | + | chr4.1:10217479-10217498 | MS.gene061773:CDS | 50.0% | |
| GTCTGTGGAGACATAGTGCA+CGG | - | chr4.1:10217450-10217469 | None:intergenic | 50.0% | |
| TATTAAGCAGGCTGCAGCAC+TGG | + | chr4.1:10217240-10217259 | MS.gene061773:CDS | 50.0% | |
| TCCGCAAGGTCAACTAATGC+AGG | - | chr4.1:10217033-10217052 | None:intergenic | 50.0% | |
| TCTGTGGAGACATAGTGCAC+GGG | - | chr4.1:10217449-10217468 | None:intergenic | 50.0% | |
| TGATCTTCTTACACGCGGCA+TGG | + | chr4.1:10215903-10215922 | MS.gene061773:CDS | 50.0% | |
| TGCACGGGTAGCATCACTTA+TGG | - | chr4.1:10217434-10217453 | None:intergenic | 50.0% | |
| TGGTCCAGAGACTGATGACT+CGG | + | chr4.1:10217735-10217754 | MS.gene061773:CDS | 50.0% | |
| TTGCATCGAGACACAAGGGT+CGG | + | chr4.1:10217113-10217132 | MS.gene061773:intron | 50.0% | |
| ! | CAGAGACTGATGACTCGGAA+TGG | + | chr4.1:10217740-10217759 | MS.gene061773:CDS | 50.0% |
| ! | CATGGTGGCGTCCATAATCA+GGG | + | chr4.1:10217694-10217713 | MS.gene061773:CDS | 50.0% |
| ! | GCGGTGTTGAAATGGAGTCT+AGG | + | chr4.1:10215926-10215945 | MS.gene061773:CDS | 50.0% |
| ! | GGCTAAAGTGGGAAAAGTGC+TGG | - | chr4.1:10215776-10215795 | None:intergenic | 50.0% |
| ! | TCACCGTGACTGGCTAAAGT+GGG | - | chr4.1:10215787-10215806 | None:intergenic | 50.0% |
| ! | TTCACCGTGACTGGCTAAAG+TGG | - | chr4.1:10215788-10215807 | None:intergenic | 50.0% |
| !! | CCTGGTTCTGCTACTTCAAC+TGG | + | chr4.1:10216311-10216330 | MS.gene061773:intron | 50.0% |
| !! | GCACTGGTTGTCAAGCTTGA+AGG | + | chr4.1:10217256-10217275 | MS.gene061773:CDS | 50.0% |
| !! | GTTGACTTGGGTTGAGCAGA+GGG | + | chr4.1:10215714-10215733 | MS.gene061773:CDS | 50.0% |
| AAACTACCTGGCATGTGGGG+TGG | + | chr4.1:10216061-10216080 | MS.gene061773:CDS | 55.0% | |
| AATGGAGTCTAGGAAGGCCG+AGG | + | chr4.1:10215936-10215955 | MS.gene061773:CDS | 55.0% | |
| AGTCTAGGAAGGCCGAGGAA+TGG | + | chr4.1:10215941-10215960 | MS.gene061773:CDS | 55.0% | |
| CACCACCGTCACCCTGATTA+TGG | - | chr4.1:10217708-10217727 | None:intergenic | 55.0% | |
| CGAGAGGCAGCTGTTAAGCA+TGG | + | chr4.1:10217676-10217695 | MS.gene061773:CDS | 55.0% | |
| GAGGCAGCTGTTAAGCATGG+TGG | + | chr4.1:10217679-10217698 | MS.gene061773:CDS | 55.0% | |
| GGCGTCCATAATCAGGGTGA+CGG | + | chr4.1:10217700-10217719 | MS.gene061773:CDS | 55.0% | |
| GTCTAGGAAGGCCGAGGAAT+GGG | + | chr4.1:10215942-10215961 | MS.gene061773:CDS | 55.0% | |
| TGCATCGAGACACAAGGGTC+GGG | + | chr4.1:10217114-10217133 | MS.gene061773:intron | 55.0% | |
| ! | AGAAGCAGATGCGTGCTGCT+TGG | + | chr4.1:10217647-10217666 | MS.gene061773:CDS | 55.0% |
| ! | CAGTTGGCTAGCCCATTCCT+CGG | - | chr4.1:10215956-10215975 | None:intergenic | 55.0% |
| ! | GCATGGTGGCGTCCATAATC+AGG | + | chr4.1:10217693-10217712 | MS.gene061773:CDS | 55.0% |
| ! | GTCCATAATCAGGGTGACGG+TGG | + | chr4.1:10217703-10217722 | MS.gene061773:CDS | 55.0% |
| ! | TGCTCGCCTCCAGAGACTTT+TGG | - | chr4.1:10217488-10217507 | None:intergenic | 55.0% |
| !! | GGGCTAGCCAACTGCAATGT+TGG | + | chr4.1:10215962-10215981 | MS.gene061773:CDS | 55.0% |
| !! | GGTTGACTTGGGTTGAGCAG+AGG | + | chr4.1:10215713-10215732 | MS.gene061773:CDS | 55.0% |
| ACAAGACCACCCCACATGCC+AGG | - | chr4.1:10216070-10216089 | None:intergenic | 60.0% | |
| CTTCTTACACGCGGCATGGG+CGG | + | chr4.1:10215907-10215926 | MS.gene061773:CDS | 60.0% | |
| GGACCTGTTGCTAGTTGCCC+TGG | + | chr4.1:10216154-10216173 | MS.gene061773:CDS | 60.0% | |
| ! | CGGCATGGGCGGTGTTGAAA+TGG | + | chr4.1:10215918-10215937 | MS.gene061773:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10215663 | 10217817 | 10215663 | ID=MS.gene061773 |
| chr4.1 | mRNA | 10215663 | 10217817 | 10215663 | ID=MS.gene061773.t1;Parent=MS.gene061773 |
| chr4.1 | exon | 10215663 | 10215983 | 10215663 | ID=MS.gene061773.t1.exon1;Parent=MS.gene061773.t1 |
| chr4.1 | CDS | 10215663 | 10215983 | 10215663 | ID=cds.MS.gene061773.t1;Parent=MS.gene061773.t1 |
| chr4.1 | exon | 10216045 | 10216282 | 10216045 | ID=MS.gene061773.t1.exon2;Parent=MS.gene061773.t1 |
| chr4.1 | CDS | 10216045 | 10216282 | 10216045 | ID=cds.MS.gene061773.t1;Parent=MS.gene061773.t1 |
| chr4.1 | exon | 10217012 | 10217101 | 10217012 | ID=MS.gene061773.t1.exon3;Parent=MS.gene061773.t1 |
| chr4.1 | CDS | 10217012 | 10217101 | 10217012 | ID=cds.MS.gene061773.t1;Parent=MS.gene061773.t1 |
| chr4.1 | exon | 10217139 | 10217817 | 10217139 | ID=MS.gene061773.t1.exon4;Parent=MS.gene061773.t1 |
| chr4.1 | CDS | 10217139 | 10217817 | 10217139 | ID=cds.MS.gene061773.t1;Parent=MS.gene061773.t1 |
| Gene Sequence |
| Protein sequence |
