Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052499.t1 | XP_013457070.1 | 96.2 | 956 | 35 | 1 | 1 | 956 | 1 | 955 | 0.00E+00 | 1477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052499.t1 | Q65Z40 | 27.3 | 293 | 144 | 11 | 102 | 387 | 656 | 886 | 9.0e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052499.t1 | A0A072UNY9 | 96.2 | 956 | 35 | 1 | 1 | 956 | 1 | 955 | 0.0e+00 | 1477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052499 | MS.gene33771 | 0.92731 | 1.40E-91 | -1.69E-46 |
| MS.gene052499 | MS.gene86966 | 0.806041 | 9.97E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052499.t1 | MTR_4g089015 | 96.444 | 956 | 33 | 1 | 1 | 956 | 1 | 955 | 0.0 | 1877 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052499.t1 | AT1G11060 | 47.643 | 594 | 287 | 13 | 1 | 584 | 58 | 637 | 2.63e-140 | 442 |
| MS.gene052499.t1 | AT1G11060 | 55.657 | 327 | 122 | 6 | 645 | 954 | 608 | 928 | 2.75e-87 | 300 |
| MS.gene052499.t1 | AT1G61030 | 44.845 | 582 | 268 | 10 | 1 | 570 | 1 | 541 | 7.18e-133 | 420 |
| MS.gene052499.t1 | AT1G61030 | 51.685 | 356 | 147 | 9 | 612 | 955 | 497 | 839 | 2.51e-90 | 306 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTCCTGGAACTATTT+TGG | 0.054582 | 4.3:+23832730 | None:intergenic |
| CATTCTTCCTGGAACTATTT+TGG | 0.057021 | 4.3:+23832868 | None:intergenic |
| GCTTAATGACCCTTTCTTTA+TGG | 0.079015 | 4.3:-23833934 | MS.gene052499:CDS |
| GACAATAGTTGATGGAATTT+TGG | 0.108553 | 4.3:-23836648 | MS.gene052499:CDS |
| GAGGAAGAATGTTCACTTTA+AGG | 0.140023 | 4.3:-23832580 | MS.gene052499:CDS |
| CCCAATTCAATCGACGATTT+TGG | 0.157665 | 4.3:-23837223 | MS.gene052499:CDS |
| TGACTCTTCTTGACTCATTT+TGG | 0.158032 | 4.3:+23832389 | None:intergenic |
| TCTGGGCTTGCTTGTAAATC+TGG | 0.214053 | 4.3:-23831886 | MS.gene052499:CDS |
| TACAATTAACTAGAACTTCT+TGG | 0.244111 | 4.3:+23835589 | None:intergenic |
| TTATCTGCCATTTCTCTTGA+TGG | 0.262164 | 4.3:-23835471 | MS.gene052499:intron |
| AGTCTGATACGTCGTCGTTT+AGG | 0.262381 | 4.3:+23837347 | None:intergenic |
| TGGTCCAAGCCTTCTGAAAA+AGG | 0.273171 | 4.3:+23830824 | None:intergenic |
| ACCAAAATCGTCGATTGAAT+TGG | 0.284859 | 4.3:+23837222 | None:intergenic |
| CGCCGCAAACCATCAATTTC+CGG | 0.297863 | 4.3:-23837388 | MS.gene052499:CDS |
| GTCTGATACGTCGTCGTTTA+GGG | 0.306575 | 4.3:+23837348 | None:intergenic |
| GCAGGAATTTCATCTGTCTT+TGG | 0.310658 | 4.3:-23829876 | MS.gene052499:intron |
| CCAAAATCGTCGATTGAATT+GGG | 0.338596 | 4.3:+23837223 | None:intergenic |
| TCGGATCAGAAGGGCTAGTT+TGG | 0.346491 | 4.3:-23837032 | MS.gene052499:CDS |
| CATTCTTCCTCGAACTACTT+AGG | 0.349484 | 4.3:+23832592 | None:intergenic |
| GTAGAGTGGGTCTTGGGATT+GGG | 0.351778 | 4.3:+23837306 | None:intergenic |
| TCTTAAGTGCCTGAAGATAA+TGG | 0.352174 | 4.3:-23834459 | MS.gene052499:CDS |
| TGGGTCTTGGGATTGGGATT+GGG | 0.353604 | 4.3:+23837312 | None:intergenic |
| GCAATTAATTGACAGCCAAT+AGG | 0.354576 | 4.3:+23832077 | None:intergenic |
| TTGATGGAGGCGCAGGAGTT+TGG | 0.359647 | 4.3:-23837121 | MS.gene052499:CDS |
| GAGGTTAATTTCGCTCTTGA+TGG | 0.361853 | 4.3:-23837076 | MS.gene052499:CDS |
| GGTGAAAGTGAGGCGGGAGC+TGG | 0.363636 | 4.3:-23830746 | MS.gene052499:CDS |
| GTGGGTCTTGGGATTGGGAT+TGG | 0.365270 | 4.3:+23837311 | None:intergenic |
| GTAATTCCTACTGGAACTAA+TGG | 0.366824 | 4.3:+23833106 | None:intergenic |
| TCAGCAATGTTAACCACTTT+GGG | 0.367940 | 4.3:+23835511 | None:intergenic |
| GGTAGAGTGGGTCTTGGGAT+TGG | 0.371751 | 4.3:+23837305 | None:intergenic |
| TTGAGAAGAGAAAGCGAAAT+CGG | 0.371928 | 4.3:+23837282 | None:intergenic |
| CGTAAACTGAACATTCTTCC+TGG | 0.374073 | 4.3:+23832719 | None:intergenic |
| GGTTGCAGCTGCAAGATTGC+TGG | 0.380197 | 4.3:+23836604 | None:intergenic |
| CTATCTTCCAAGACTACAAC+AGG | 0.386943 | 4.3:+23832825 | None:intergenic |
| TTGACTAACGACAACCCTAT+TGG | 0.388364 | 4.3:-23832092 | MS.gene052499:CDS |
| CTATCTTCCAAGATTACAAC+CGG | 0.392705 | 4.3:+23832549 | None:intergenic |
| CTATCTTCCAAGATTACAAC+CGG | 0.392705 | 4.3:+23832687 | None:intergenic |
| TTGATAGTTGTGGATACAAT+TGG | 0.396412 | 4.3:+23835726 | None:intergenic |
| CATCAAATGCAAAGGGGTCT+TGG | 0.396562 | 4.3:+23832526 | None:intergenic |
| CTAGCCCTTCTGATCCGAAT+TGG | 0.396792 | 4.3:+23837037 | None:intergenic |
| CACTAGTTAAAATGTAGAAA+AGG | 0.398233 | 4.3:+23836582 | None:intergenic |
| CGATAGTAGGTCCCACTTAG+AGG | 0.400082 | 4.3:+23832488 | None:intergenic |
| GTCAGCAATGTTAACCACTT+TGG | 0.402172 | 4.3:+23835510 | None:intergenic |
| CTACTGGAACTAATGGATAT+AGG | 0.404595 | 4.3:+23833113 | None:intergenic |
| CAATTAATTGACAGCCAATA+GGG | 0.404969 | 4.3:+23832078 | None:intergenic |
| AAGTACCCCGGTTGTAATCT+TGG | 0.406401 | 4.3:-23832694 | MS.gene052499:CDS |
| CATCAAATGCAAATGGATCT+TGG | 0.407697 | 4.3:+23832664 | None:intergenic |
| CCACGACCCAAAATAGTTCC+AGG | 0.411206 | 4.3:-23832875 | MS.gene052499:CDS |
| ATTTCGCTCTTGATGGGCTT+CGG | 0.413660 | 4.3:-23837069 | MS.gene052499:CDS |
| ACGTACCCCGGTTGTAATCT+TGG | 0.416580 | 4.3:-23832556 | MS.gene052499:CDS |
| TTCTTTACCATCAAGAGAAA+TGG | 0.418970 | 4.3:+23835464 | None:intergenic |
| GTCATAACTTATGTCAGAAC+TGG | 0.426510 | 4.3:+23832344 | None:intergenic |
| ACAGGGACACCTTCAGTAAA+GGG | 0.427291 | 4.3:+23832843 | None:intergenic |
| CTATGACCCAAAATAGTTCC+AGG | 0.431367 | 4.3:-23832737 | MS.gene052499:CDS |
| GTGAAAGTGAGGCGGGAGCT+GGG | 0.432770 | 4.3:-23830745 | MS.gene052499:CDS |
| AAGGCTTGGACCAGGAGGTT+CGG | 0.436011 | 4.3:-23830814 | MS.gene052499:CDS |
| TAAGGAGGCAATCAGTTAGA+AGG | 0.436868 | 4.3:+23832310 | None:intergenic |
| ATTCTTCCTCGAACTACTTA+GGG | 0.440300 | 4.3:+23832593 | None:intergenic |
| ATCGGGGTAGAGTGGGTCTT+GGG | 0.442872 | 4.3:+23837300 | None:intergenic |
| AAAAGGACCATCTATGTGAT+AGG | 0.443163 | 4.3:-23831947 | MS.gene052499:CDS |
| AGTAAAGGGAACATTCTTCC+TGG | 0.443265 | 4.3:+23832857 | None:intergenic |
| GAATACGTTCCGGAAATTGA+TGG | 0.443414 | 4.3:+23837379 | None:intergenic |
| AGACTTGCTAAGTTGTGATC+TGG | 0.443554 | 4.3:+23830211 | None:intergenic |
| TCAGCTCCGTAAAAGACAAT+GGG | 0.444372 | 4.3:+23834179 | None:intergenic |
| TGCTTTGTCTTTGATAGTTG+TGG | 0.445089 | 4.3:+23835716 | None:intergenic |
| CACACCATTGTAATTCCTAC+TGG | 0.446552 | 4.3:+23833097 | None:intergenic |
| TTCGGAAAGGTCAACCAATT+CGG | 0.448470 | 4.3:-23837051 | MS.gene052499:CDS |
| TTGAGAAGGATGGTCGTAAC+AGG | 0.449162 | 4.3:-23831863 | MS.gene052499:intron |
| TTGGGATTGGGATTGGGAAA+GGG | 0.449889 | 4.3:+23837318 | None:intergenic |
| AAAGACAATGGGGTTGCCTT+AGG | 0.453975 | 4.3:+23834190 | None:intergenic |
| TTCCGGAAATTGATGGTTTG+CGG | 0.454271 | 4.3:+23837386 | None:intergenic |
| ATTTGTCTTTCAGAATTGTA+AGG | 0.456261 | 4.3:-23834546 | MS.gene052499:intron |
| TGAGAAGAGAAAGCGAAATC+GGG | 0.458118 | 4.3:+23837283 | None:intergenic |
| ACCGAGCACATGTCAATAGT+TGG | 0.463917 | 4.3:+23833030 | None:intergenic |
| GCTATGTCTATGTTAATTGC+TGG | 0.464905 | 4.3:-23832035 | MS.gene052499:CDS |
| AGGTTAATTTCGCTCTTGAT+GGG | 0.467144 | 4.3:-23837075 | MS.gene052499:CDS |
| TGCTGCCCATGGAGGGTTGG+AGG | 0.467231 | 4.3:-23832057 | MS.gene052499:CDS |
| GTGCCACAACACAGCAAAGA+AGG | 0.467493 | 4.3:-23836991 | MS.gene052499:CDS |
| TCATCCTCATCAAATGCAAA+TGG | 0.468762 | 4.3:+23832657 | None:intergenic |
| CTTGGGATTGGGATTGGGAA+AGG | 0.469988 | 4.3:+23837317 | None:intergenic |
| TAACACAACAAGGTGATTCA+AGG | 0.470102 | 4.3:+23835772 | None:intergenic |
| AAGCCTTCTTTGCTGTGTTG+TGG | 0.473030 | 4.3:+23836988 | None:intergenic |
| TCATCCTCATCAAATGCAAA+GGG | 0.473724 | 4.3:+23832519 | None:intergenic |
| AACAGGGACACCTTCAGTAA+AGG | 0.474820 | 4.3:+23832842 | None:intergenic |
| TCTAAGTGGGACCTACTATC+GGG | 0.476412 | 4.3:-23832486 | MS.gene052499:CDS |
| GGCCAGCGATGATTCTGAAC+TGG | 0.476713 | 4.3:-23833913 | MS.gene052499:CDS |
| ACTCATTTGCTTGGAATGAA+AGG | 0.476771 | 4.3:-23834223 | MS.gene052499:CDS |
| GTGGTTAACATTGCTGACTA+TGG | 0.479297 | 4.3:-23835505 | MS.gene052499:CDS |
| CATCAAATGCAAAGGGATCA+TGG | 0.479401 | 4.3:+23832802 | None:intergenic |
| AGGATCAATTCATCCACATC+TGG | 0.481164 | 4.3:-23832939 | MS.gene052499:CDS |
| AATCGGGGTAGAGTGGGTCT+TGG | 0.482811 | 4.3:+23837299 | None:intergenic |
| AGGTGTCCCTGTTGTAGTCT+TGG | 0.484408 | 4.3:-23832832 | MS.gene052499:CDS |
| ACTAGTTAAAATGTAGAAAA+GGG | 0.486321 | 4.3:+23836583 | None:intergenic |
| TCTGGTGCTGTACGGAAGAC+TGG | 0.486444 | 4.3:-23834882 | MS.gene052499:CDS |
| TGCTGTTCTACAAGGTGAAA+AGG | 0.486486 | 4.3:-23830423 | MS.gene052499:CDS |
| TTGGGATTGGGAAAGGGAAA+GGG | 0.486542 | 4.3:+23837324 | None:intergenic |
| TCATCGCTGGCCATAAAGAA+AGG | 0.486705 | 4.3:+23833924 | None:intergenic |
| CCGAGCACATGTCAATAGTT+GGG | 0.486788 | 4.3:+23833031 | None:intergenic |
| TCCGGCGACGTCGACGTTGA+TGG | 0.486979 | 4.3:-23837137 | MS.gene052499:CDS |
| ATGGCAAAGACAATAGTTGA+TGG | 0.488358 | 4.3:-23836656 | MS.gene052499:CDS |
| AAATCCCTTGAGAACTGAAA+AGG | 0.489413 | 4.3:-23831964 | MS.gene052499:CDS |
| GATCAGTTAAGAGACTATAA+AGG | 0.490599 | 4.3:-23833891 | MS.gene052499:intron |
| CTTGGACCAGGAGGTTCGGC+GGG | 0.491437 | 4.3:-23830810 | MS.gene052499:CDS |
| AGAAGGCTTCTTCGTTCTCA+AGG | 0.491687 | 4.3:-23836974 | MS.gene052499:CDS |
| TCACCTTGTAGAACAGCAGC+AGG | 0.492302 | 4.3:+23830428 | None:intergenic |
| TACGTCGTCGTTTAGGGAAG+AGG | 0.493043 | 4.3:+23837354 | None:intergenic |
| ACCTGTGTTGGACAGATTTG+TGG | 0.497785 | 4.3:-23830185 | MS.gene052499:intron |
| TTAGATGCCTATCACATAGA+TGG | 0.498416 | 4.3:+23831940 | None:intergenic |
| ATTGTCATTAAAATGCTCTC+AGG | 0.500925 | 4.3:-23834151 | MS.gene052499:intron |
| GTCAACCAATTCGGATCAGA+AGG | 0.501857 | 4.3:-23837042 | MS.gene052499:CDS |
| GCAGGAGTTTGGCGAGATGA+TGG | 0.504193 | 4.3:-23837110 | MS.gene052499:CDS |
| ATTGGGATTGGGAAAGGGAA+AGG | 0.507457 | 4.3:+23837323 | None:intergenic |
| TTCTAGATCTATGTCTGCGT+CGG | 0.512413 | 4.3:-23833986 | MS.gene052499:intron |
| AACCACTTTGGGCATAACTC+TGG | 0.515359 | 4.3:+23835522 | None:intergenic |
| ACTATTGACATGTGCTCGGT+TGG | 0.517595 | 4.3:-23833027 | MS.gene052499:CDS |
| CTCTAAGTGGGACCTACTAT+CGG | 0.518152 | 4.3:-23832487 | MS.gene052499:CDS |
| AGAAGTTTCGAGCCAAGACT+TGG | 0.519231 | 4.3:+23835693 | None:intergenic |
| TGAAAGTGAGGCGGGAGCTG+GGG | 0.520144 | 4.3:-23830744 | MS.gene052499:CDS |
| ACATAGCCTCCAACCCTCCA+TGG | 0.523096 | 4.3:+23832051 | None:intergenic |
| GGAAGCTGAGAAAATGATTG+TGG | 0.525325 | 4.3:-23830402 | MS.gene052499:CDS |
| TCGTTACAGACTCATTTGCT+TGG | 0.526301 | 4.3:-23834232 | MS.gene052499:intron |
| TAACATCCCGCCGAACCTCC+TGG | 0.526713 | 4.3:+23830804 | None:intergenic |
| AAAGACAAAGCACCAAGTCT+TGG | 0.528110 | 4.3:-23835705 | MS.gene052499:CDS |
| GGCACTTAAGAAGCAAGGTT+AGG | 0.528234 | 4.3:+23834471 | None:intergenic |
| TAGCATTTCTTTCCACGGAA+AGG | 0.528323 | 4.3:-23830358 | MS.gene052499:intron |
| AACCAGGGTGAAAGTGAGGC+GGG | 0.528592 | 4.3:-23830752 | MS.gene052499:CDS |
| TCCATCAACGTCGACGTCGC+CGG | 0.529306 | 4.3:+23837136 | None:intergenic |
| GGAAGAGGATGAATACGTTC+CGG | 0.529989 | 4.3:+23837369 | None:intergenic |
| CCACGTCCCTAAGTAGTTCG+AGG | 0.530299 | 4.3:-23832599 | MS.gene052499:CDS |
| TCATCGAGTCATGTAGAATA+CGG | 0.530850 | 4.3:-23829814 | MS.gene052499:CDS |
| TTGCCTCCTTACTGCTGTCA+AGG | 0.531934 | 4.3:-23832298 | MS.gene052499:intron |
| CTTCAGGCACTTAAGAAGCA+AGG | 0.532826 | 4.3:+23834466 | None:intergenic |
| ATCATCCTCATCAAATGCAA+AGG | 0.533512 | 4.3:+23832518 | None:intergenic |
| GATGACGGTGAGCTGAAAGA+AGG | 0.533860 | 4.3:+23832005 | None:intergenic |
| GTTAGAATTCTTAATAGAAG+AGG | 0.534143 | 4.3:+23833067 | None:intergenic |
| ATCAGCTCCGTAAAAGACAA+TGG | 0.535349 | 4.3:+23834178 | None:intergenic |
| GTCATTAAGCTTGTTATCAA+CGG | 0.536873 | 4.3:+23833947 | None:intergenic |
| GCTCTTGATGGGCTTCGGAA+AGG | 0.538706 | 4.3:-23837064 | MS.gene052499:CDS |
| GCTTCTAGCATTTCTTTCCA+CGG | 0.540958 | 4.3:-23830363 | MS.gene052499:CDS |
| GCTTGGACCAGGAGGTTCGG+CGG | 0.541959 | 4.3:-23830811 | MS.gene052499:CDS |
| AGTCAAGAAGAGTCAAGTGA+TGG | 0.542611 | 4.3:-23832381 | MS.gene052499:CDS |
| ATGATATTGCGCCCTCTAAG+TGG | 0.550332 | 4.3:-23832500 | MS.gene052499:CDS |
| GTCATCCTCATCAAATGCAA+AGG | 0.550505 | 4.3:+23832794 | None:intergenic |
| TCATCCTCATCAAATGCAAA+GGG | 0.551115 | 4.3:+23832795 | None:intergenic |
| AACATTGCTGACTATGGAGA+AGG | 0.554008 | 4.3:-23835499 | MS.gene052499:CDS |
| GAGGCAATCAGTTAGAAGGC+TGG | 0.554722 | 4.3:+23832314 | None:intergenic |
| GTTGCAGCTGCAAGATTGCT+GGG | 0.555283 | 4.3:+23836605 | None:intergenic |
| CTCAAGATTCTTCCTCTCAG+TGG | 0.555445 | 4.3:-23837264 | MS.gene052499:CDS |
| AGCAAGTCTTGTACCTGTGT+TGG | 0.555893 | 4.3:-23830197 | MS.gene052499:CDS |
| GAATTACAATGGTGTGGAGA+GGG | 0.556952 | 4.3:-23833090 | MS.gene052499:CDS |
| AAGAATGTTCCCTTTACTGA+AGG | 0.558436 | 4.3:-23832852 | MS.gene052499:CDS |
| AAAATACCTTGACAGCAGTA+AGG | 0.558563 | 4.3:+23832292 | None:intergenic |
| AAAGCGAAATCGGGGTAGAG+TGG | 0.559686 | 4.3:+23837292 | None:intergenic |
| GTCGACGTTGATGGAGGCGC+AGG | 0.560181 | 4.3:-23837128 | MS.gene052499:CDS |
| GTGGTCGACGGGAGCCAAAG+AGG | 0.560430 | 4.3:-23837195 | MS.gene052499:CDS |
| GATCCTGCTGCTGTTCTACA+AGG | 0.563168 | 4.3:-23830431 | MS.gene052499:CDS |
| CAGAAACCTCTGGTGCTGTA+CGG | 0.570807 | 4.3:-23834890 | MS.gene052499:CDS |
| AATTGCTGCCCATGGAGGGT+TGG | 0.571145 | 4.3:-23832060 | MS.gene052499:CDS |
| ATGACGGTGAGCTGAAAGAA+GGG | 0.571829 | 4.3:+23832006 | None:intergenic |
| CCCAACTATTGACATGTGCT+CGG | 0.574965 | 4.3:-23833031 | MS.gene052499:CDS |
| TTTATCTGAGCAAAGGATGA+CGG | 0.575426 | 4.3:+23831990 | None:intergenic |
| CTCCCGCCTCACTTTCACCC+TGG | 0.576417 | 4.3:+23830750 | None:intergenic |
| TGGTCGACGGGAGCCAAAGA+GGG | 0.577988 | 4.3:-23837194 | MS.gene052499:CDS |
| GCTTGTAAATCTGGTTGAGA+AGG | 0.578725 | 4.3:-23831877 | MS.gene052499:CDS |
| AGATCCATTTGCATTTGATG+AGG | 0.578867 | 4.3:-23832661 | MS.gene052499:CDS |
| CAATTAATTGCTGCCCATGG+AGG | 0.579731 | 4.3:-23832065 | MS.gene052499:CDS |
| AGACCCCTTTGCATTTGATG+AGG | 0.581163 | 4.3:-23832523 | MS.gene052499:CDS |
| GAAGGCTTCTTCGTTCTCAA+GGG | 0.581373 | 4.3:-23836973 | MS.gene052499:intron |
| GAATTGTCATTCAGATCTGA+AGG | 0.585420 | 4.3:-23834796 | MS.gene052499:intron |
| TGATATTGCGCCCTCTAAGT+GGG | 0.585660 | 4.3:-23832499 | MS.gene052499:CDS |
| CATCGCTGGCCATAAAGAAA+GGG | 0.587555 | 4.3:+23833925 | None:intergenic |
| CATAGCCTCCAACCCTCCAT+GGG | 0.588009 | 4.3:+23832052 | None:intergenic |
| GAAAGGAAAGTTGAGTCCTA+AGG | 0.588906 | 4.3:-23834206 | MS.gene052499:CDS |
| GTAAATCTGGTTGAGAAGGA+TGG | 0.589105 | 4.3:-23831873 | MS.gene052499:CDS |
| TCAGTTTACGAGAAGTACCC+CGG | 0.590409 | 4.3:-23832706 | MS.gene052499:CDS |
| GTATCAGTAGTTGATGTGCT+AGG | 0.592926 | 4.3:+23832978 | None:intergenic |
| ATCCAGTTCAGAATCATCGC+TGG | 0.594748 | 4.3:+23833911 | None:intergenic |
| AGCTTGTTATCAACGGACAC+AGG | 0.596570 | 4.3:+23833954 | None:intergenic |
| GCATCTAACTGACCACGAGT+TGG | 0.597868 | 4.3:-23831925 | MS.gene052499:CDS |
| CAGTAGGAATTACAATGGTG+TGG | 0.598823 | 4.3:-23833096 | MS.gene052499:CDS |
| AAGCGAAATCGGGGTAGAGT+GGG | 0.599359 | 4.3:+23837293 | None:intergenic |
| ATAAGAAGTTCACCTTTCCG+TGG | 0.602713 | 4.3:+23830346 | None:intergenic |
| AATTAATTGCTGCCCATGGA+GGG | 0.603684 | 4.3:-23832064 | MS.gene052499:CDS |
| TGATCCCTTTGCATTTGATG+AGG | 0.604280 | 4.3:-23832799 | MS.gene052499:CDS |
| GATAGTAGGTCCCACTTAGA+GGG | 0.607332 | 4.3:+23832489 | None:intergenic |
| GTCAAGAAGAGTCAAGTGAT+GGG | 0.610912 | 4.3:-23832380 | MS.gene052499:CDS |
| GGCTAACCAGGGTGAAAGTG+AGG | 0.611463 | 4.3:-23830756 | MS.gene052499:CDS |
| ATTAGAAATTTAACACAACA+AGG | 0.611971 | 4.3:+23835762 | None:intergenic |
| TACTTGTGTACAGAAACCTC+TGG | 0.614836 | 4.3:-23834900 | MS.gene052499:intron |
| TTCAGAAGGCTTGGACCAGG+AGG | 0.618969 | 4.3:-23830819 | MS.gene052499:CDS |
| CCTCGAACTACTTAGGGACG+TGG | 0.619708 | 4.3:+23832599 | None:intergenic |
| TCACTTTAAGGAACGTACCC+CGG | 0.622558 | 4.3:-23832568 | MS.gene052499:CDS |
| ATACATACTCACTAAAGATG+AGG | 0.627563 | 4.3:-23832959 | MS.gene052499:CDS |
| ACTACTGCAAGAACCAGATG+TGG | 0.629778 | 4.3:+23832926 | None:intergenic |
| AGTCTTCCGTACAGCACCAG+AGG | 0.630144 | 4.3:+23834884 | None:intergenic |
| GATGATGGAGCAAAATGATG+AGG | 0.630944 | 4.3:-23837095 | MS.gene052499:CDS |
| ATCGTCGATTGAATTGGGGT+CGG | 0.632919 | 4.3:+23837228 | None:intergenic |
| CAAAATCGTCGATTGAATTG+GGG | 0.633287 | 4.3:+23837224 | None:intergenic |
| GGCGACGTCGACGTTGATGG+AGG | 0.633323 | 4.3:-23837134 | MS.gene052499:CDS |
| GACCAGAGTTATGCCCAAAG+TGG | 0.635018 | 4.3:-23835524 | MS.gene052499:CDS |
| GGAATTACAATGGTGTGGAG+AGG | 0.637221 | 4.3:-23833091 | MS.gene052499:CDS |
| ACCACAAATCTGTCCAACAC+AGG | 0.637664 | 4.3:+23830184 | None:intergenic |
| TAACCAGGGTGAAAGTGAGG+CGG | 0.641799 | 4.3:-23830753 | MS.gene052499:CDS |
| TGTCAATTAATTGCTGCCCA+TGG | 0.645816 | 4.3:-23832068 | MS.gene052499:CDS |
| GATTGTCAGCAATTGCTGCA+CGG | 0.645862 | 4.3:+23830236 | None:intergenic |
| GTTATCAACGGACACAGGAG+AGG | 0.648725 | 4.3:+23833959 | None:intergenic |
| TCAACCAATTCGGATCAGAA+GGG | 0.657859 | 4.3:-23837041 | MS.gene052499:CDS |
| ATACCTTGACAGCAGTAAGG+AGG | 0.658288 | 4.3:+23832295 | None:intergenic |
| CAACGTGTCAGAATAACAGT+GGG | 0.658807 | 4.3:-23835554 | MS.gene052499:CDS |
| AGTTCCAGTAGGAATTACAA+TGG | 0.660824 | 4.3:-23833101 | MS.gene052499:CDS |
| GCATTTGATGAGGATGACAG+TGG | 0.664713 | 4.3:-23832789 | MS.gene052499:CDS |
| GCAACGTGTCAGAATAACAG+TGG | 0.667678 | 4.3:-23835555 | MS.gene052499:CDS |
| GAGAAGAGAAAGCGAAATCG+GGG | 0.669206 | 4.3:+23837284 | None:intergenic |
| TATCTTCCAAGATTACAACC+GGG | 0.672434 | 4.3:+23832550 | None:intergenic |
| TATCTTCCAAGATTACAACC+GGG | 0.672434 | 4.3:+23832688 | None:intergenic |
| CAACAAGAAAATCCAACTCG+TGG | 0.673146 | 4.3:+23831913 | None:intergenic |
| ATCGAAGAAAGACCACTGAG+AGG | 0.674356 | 4.3:+23837252 | None:intergenic |
| CTATATCCATTAGTTCCAGT+AGG | 0.678113 | 4.3:-23833112 | MS.gene052499:CDS |
| CTAAGTGGGACCTACTATCG+GGG | 0.685030 | 4.3:-23832485 | MS.gene052499:CDS |
| ATCTTCCAAGATTACAACCG+GGG | 0.696587 | 4.3:+23832551 | None:intergenic |
| ATCTTCCAAGATTACAACCG+GGG | 0.696587 | 4.3:+23832689 | None:intergenic |
| GCATTTGATGAGGATGACAG+TGG | 0.696947 | 4.3:-23832651 | MS.gene052499:CDS |
| CATCCTCATCAAATGCAAAG+GGG | 0.707305 | 4.3:+23832520 | None:intergenic |
| GGTGCTGTACGGAAGACTGG+TGG | 0.712043 | 4.3:-23834879 | MS.gene052499:CDS |
| CAGCTCCGTAAAAGACAATG+GGG | 0.716546 | 4.3:+23834180 | None:intergenic |
| TATCTTCCAAGACTACAACA+GGG | 0.759615 | 4.3:+23832826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23829811 | 23837431 | 23829811 | ID=MS.gene052499 |
| chr4.3 | mRNA | 23829811 | 23837431 | 23829811 | ID=MS.gene052499.t1;Parent=MS.gene052499 |
| chr4.3 | exon | 23836974 | 23837431 | 23836974 | ID=MS.gene052499.t1.exon1;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23836974 | 23837431 | 23836974 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23836580 | 23836679 | 23836580 | ID=MS.gene052499.t1.exon2;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23836580 | 23836679 | 23836580 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23835472 | 23835811 | 23835472 | ID=MS.gene052499.t1.exon3;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23835472 | 23835811 | 23835472 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23834797 | 23834909 | 23834797 | ID=MS.gene052499.t1.exon4;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23834797 | 23834909 | 23834797 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23834427 | 23834555 | 23834427 | ID=MS.gene052499.t1.exon5;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23834427 | 23834555 | 23834427 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23834152 | 23834245 | 23834152 | ID=MS.gene052499.t1.exon6;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23834152 | 23834245 | 23834152 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23833892 | 23834002 | 23833892 | ID=MS.gene052499.t1.exon7;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23833892 | 23834002 | 23833892 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23832299 | 23833143 | 23832299 | ID=MS.gene052499.t1.exon8;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23832299 | 23833143 | 23832299 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23831864 | 23832126 | 23831864 | ID=MS.gene052499.t1.exon9;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23831864 | 23832126 | 23831864 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23830724 | 23830877 | 23830724 | ID=MS.gene052499.t1.exon10;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23830724 | 23830877 | 23830724 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23830359 | 23830456 | 23830359 | ID=MS.gene052499.t1.exon11;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23830359 | 23830456 | 23830359 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23830186 | 23830267 | 23830186 | ID=MS.gene052499.t1.exon12;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23830186 | 23830267 | 23830186 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| chr4.3 | exon | 23829811 | 23829894 | 23829811 | ID=MS.gene052499.t1.exon13;Parent=MS.gene052499.t1 |
| chr4.3 | CDS | 23829811 | 23829894 | 23829811 | ID=cds.MS.gene052499.t1;Parent=MS.gene052499.t1 |
| Gene Sequence |
| Protein sequence |
