Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33771.t1 | XP_013457070.1 | 96.2 | 929 | 34 | 1 | 1 | 929 | 1 | 928 | 0.00E+00 | 1426.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33771.t1 | Q65Z40 | 27.3 | 293 | 144 | 11 | 102 | 387 | 656 | 886 | 8.7e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33771.t1 | A0A072UNY9 | 96.2 | 929 | 34 | 1 | 1 | 929 | 1 | 928 | 0.0e+00 | 1426.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050786 | MS.gene33771 | 0.829206 | 5.86E-55 | -1.69E-46 |
| MS.gene052499 | MS.gene33771 | 0.92731 | 1.40E-91 | -1.69E-46 |
| MS.gene055784 | MS.gene33771 | 0.818272 | 2.14E-52 | -1.69E-46 |
| MS.gene055785 | MS.gene33771 | 0.838912 | 2.17E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33771.t1 | MTR_4g089015 | 96.448 | 929 | 32 | 1 | 1 | 929 | 1 | 928 | 0.0 | 1824 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33771.t1 | AT1G11060 | 47.643 | 594 | 287 | 13 | 1 | 584 | 58 | 637 | 1.20e-140 | 442 |
| MS.gene33771.t1 | AT1G11060 | 54.967 | 302 | 113 | 6 | 645 | 929 | 608 | 903 | 4.71e-75 | 265 |
| MS.gene33771.t1 | AT1G61030 | 44.845 | 582 | 268 | 10 | 1 | 570 | 1 | 541 | 3.55e-133 | 420 |
| MS.gene33771.t1 | AT1G61030 | 50.303 | 330 | 139 | 9 | 612 | 929 | 497 | 813 | 1.56e-76 | 268 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTCCTGGAACTATTT+TGG | 0.054582 | 4.3:+23864841 | None:intergenic |
| CATTCTTCCTGGAACTATTT+TGG | 0.057021 | 4.3:+23864979 | None:intergenic |
| GCTTAATGACCCTTTCTTTA+TGG | 0.079015 | 4.3:-23866045 | MS.gene33771:CDS |
| GACAATAGTTGATGGAATTT+TGG | 0.108553 | 4.3:-23868732 | MS.gene33771:CDS |
| GAGGAAGAATGTTCACTTTA+AGG | 0.140023 | 4.3:-23864691 | MS.gene33771:CDS |
| CCCAATTCAATCGACGATTT+TGG | 0.157665 | 4.3:-23869303 | MS.gene33771:CDS |
| TGACTCTTCTTGACTCATTT+TGG | 0.158032 | 4.3:+23864500 | None:intergenic |
| TCTGGGCTTGCTTGTAAATC+TGG | 0.214053 | 4.3:-23863997 | MS.gene33771:CDS |
| TACAATTAACTAGAACTTCT+TGG | 0.244111 | 4.3:+23867700 | None:intergenic |
| TTATCTGCCATTTCTCTTGA+TGG | 0.262164 | 4.3:-23867582 | MS.gene33771:intron |
| AGTCTGATACGTCGTCGTTT+AGG | 0.262381 | 4.3:+23869427 | None:intergenic |
| ACCAAAATCGTCGATTGAAT+TGG | 0.284859 | 4.3:+23869302 | None:intergenic |
| CGCCGCAAACCATCAATTTC+CGG | 0.297863 | 4.3:-23869468 | MS.gene33771:CDS |
| GTCTGATACGTCGTCGTTTA+GGG | 0.306575 | 4.3:+23869428 | None:intergenic |
| CCAAAATCGTCGATTGAATT+GGG | 0.338596 | 4.3:+23869303 | None:intergenic |
| TCGGATCAGAAGGGCTAGTT+TGG | 0.346491 | 4.3:-23869112 | MS.gene33771:CDS |
| CATTCTTCCTCGAACTACTT+AGG | 0.349484 | 4.3:+23864703 | None:intergenic |
| GTAGAGTGGGTCTTGGGATT+GGG | 0.351778 | 4.3:+23869386 | None:intergenic |
| TCTTAAGTGCCTGAAGATAA+TGG | 0.352174 | 4.3:-23866570 | MS.gene33771:CDS |
| TGGGTCTTGGGATTGGGATT+GGG | 0.353604 | 4.3:+23869392 | None:intergenic |
| GCAATTAATTGACAGCCAAT+AGG | 0.354576 | 4.3:+23864188 | None:intergenic |
| TTGATGGAGGCGCAGGAGTT+TGG | 0.359647 | 4.3:-23869201 | MS.gene33771:CDS |
| GAGGTTAATTTCGCTCTTGA+TGG | 0.361853 | 4.3:-23869156 | MS.gene33771:CDS |
| GGTGAAAGTGAGGCGGGAGC+TGG | 0.363636 | 4.3:-23862857 | MS.gene33771:CDS |
| GTGGGTCTTGGGATTGGGAT+TGG | 0.365270 | 4.3:+23869391 | None:intergenic |
| GTAATTCCTACTGGAACTAA+TGG | 0.366824 | 4.3:+23865217 | None:intergenic |
| TCAGCAATGTTAACCACTTT+GGG | 0.367940 | 4.3:+23867622 | None:intergenic |
| GGTAGAGTGGGTCTTGGGAT+TGG | 0.371751 | 4.3:+23869385 | None:intergenic |
| TTGAGAAGAGAAAGCGAAAT+CGG | 0.371928 | 4.3:+23869362 | None:intergenic |
| CGTAAACTGAACATTCTTCC+TGG | 0.374073 | 4.3:+23864830 | None:intergenic |
| GGTAGCAGCTGCAAGATTGC+TGG | 0.381115 | 4.3:+23868688 | None:intergenic |
| CTATCTTCCAAGACTACAAC+AGG | 0.386943 | 4.3:+23864936 | None:intergenic |
| TTGACTAACGACAACCCTAT+TGG | 0.388364 | 4.3:-23864203 | MS.gene33771:CDS |
| CTATCTTCCAAGATTACAAC+CGG | 0.392705 | 4.3:+23864660 | None:intergenic |
| CTATCTTCCAAGATTACAAC+CGG | 0.392705 | 4.3:+23864798 | None:intergenic |
| TTGATAGTTGTGGATACAAT+TGG | 0.396412 | 4.3:+23867837 | None:intergenic |
| CATCAAATGCAAAGGGGTCT+TGG | 0.396562 | 4.3:+23864637 | None:intergenic |
| CTAGCCCTTCTGATCCGAAT+TGG | 0.396792 | 4.3:+23869117 | None:intergenic |
| CACTAGTTAAAATGTAGAAA+AGG | 0.398233 | 4.3:+23868666 | None:intergenic |
| CGATAGTAGGTCCCACTTAG+AGG | 0.400082 | 4.3:+23864599 | None:intergenic |
| GTCAGCAATGTTAACCACTT+TGG | 0.402172 | 4.3:+23867621 | None:intergenic |
| CTACTGGAACTAATGGATAT+AGG | 0.404595 | 4.3:+23865224 | None:intergenic |
| CAATTAATTGACAGCCAATA+GGG | 0.404969 | 4.3:+23864189 | None:intergenic |
| AAGTACCCCGGTTGTAATCT+TGG | 0.406401 | 4.3:-23864805 | MS.gene33771:CDS |
| CATCAAATGCAAATGGATCT+TGG | 0.407697 | 4.3:+23864775 | None:intergenic |
| CCACGACCCAAAATAGTTCC+AGG | 0.411206 | 4.3:-23864986 | MS.gene33771:CDS |
| ATTTCGCTCTTGATGGGCTT+CGG | 0.413660 | 4.3:-23869149 | MS.gene33771:CDS |
| ACTTCCTTCTTCAGAAGGCT+TGG | 0.414944 | 4.3:-23862939 | MS.gene33771:CDS |
| ACGTACCCCGGTTGTAATCT+TGG | 0.416580 | 4.3:-23864667 | MS.gene33771:CDS |
| TTCTTTACCATCAAGAGAAA+TGG | 0.418970 | 4.3:+23867575 | None:intergenic |
| GTCATAACTTATGTCAGAAC+TGG | 0.426510 | 4.3:+23864455 | None:intergenic |
| ACAGGGACACCTTCAGTAAA+GGG | 0.427291 | 4.3:+23864954 | None:intergenic |
| CTATGACCCAAAATAGTTCC+AGG | 0.431367 | 4.3:-23864848 | MS.gene33771:CDS |
| GTGAAAGTGAGGCGGGAGCT+GGG | 0.432770 | 4.3:-23862856 | MS.gene33771:CDS |
| AAGGCTTGGACCAGGAGGTT+CGG | 0.436011 | 4.3:-23862925 | MS.gene33771:CDS |
| TAAGGAGGCAATCAGTTAGA+AGG | 0.436868 | 4.3:+23864421 | None:intergenic |
| ATTCTTCCTCGAACTACTTA+GGG | 0.440300 | 4.3:+23864704 | None:intergenic |
| ATCGGGGTAGAGTGGGTCTT+GGG | 0.442872 | 4.3:+23869380 | None:intergenic |
| AAAAGGACCATCTATGTGAT+AGG | 0.443163 | 4.3:-23864058 | MS.gene33771:CDS |
| AGTAAAGGGAACATTCTTCC+TGG | 0.443265 | 4.3:+23864968 | None:intergenic |
| GAATACGTTCCGGAAATTGA+TGG | 0.443414 | 4.3:+23869459 | None:intergenic |
| AGACTTGCTAAGTTGTGATC+TGG | 0.443554 | 4.3:+23862322 | None:intergenic |
| TCAGCTCCGTAAAAGACAAT+GGG | 0.444372 | 4.3:+23866290 | None:intergenic |
| TGCTTTGTCTTTGATAGTTG+TGG | 0.445089 | 4.3:+23867827 | None:intergenic |
| CACACCATTGTAATTCCTAC+TGG | 0.446552 | 4.3:+23865208 | None:intergenic |
| TTCGGAAAGGTCAACCAATT+CGG | 0.448470 | 4.3:-23869131 | MS.gene33771:CDS |
| TTGAGAAGGATGGTCGTAAC+AGG | 0.449162 | 4.3:-23863974 | MS.gene33771:intron |
| TTGGGATTGGGATTGGGAAA+GGG | 0.449889 | 4.3:+23869398 | None:intergenic |
| AAAGACAATGGGGTTGCCTT+AGG | 0.453975 | 4.3:+23866301 | None:intergenic |
| TTCCGGAAATTGATGGTTTG+CGG | 0.454271 | 4.3:+23869466 | None:intergenic |
| ATTTGTCTTTCAGAATTGTA+AGG | 0.456261 | 4.3:-23866657 | MS.gene33771:intron |
| TGAGAAGAGAAAGCGAAATC+GGG | 0.458118 | 4.3:+23869363 | None:intergenic |
| ACCGAGCACATGTCAATAGT+TGG | 0.463917 | 4.3:+23865141 | None:intergenic |
| GCTATGTCTATGTTAATTGC+TGG | 0.464905 | 4.3:-23864146 | MS.gene33771:CDS |
| AGGTTAATTTCGCTCTTGAT+GGG | 0.467144 | 4.3:-23869155 | MS.gene33771:CDS |
| TGCTGCCCATGGAGGGTTGG+AGG | 0.467231 | 4.3:-23864168 | MS.gene33771:CDS |
| GTGCCACAACACAGCAAAGA+AGG | 0.467493 | 4.3:-23869071 | MS.gene33771:CDS |
| TCATCCTCATCAAATGCAAA+TGG | 0.468762 | 4.3:+23864768 | None:intergenic |
| CTTGGGATTGGGATTGGGAA+AGG | 0.469988 | 4.3:+23869397 | None:intergenic |
| TAACACAACAAGGTGATTCA+AGG | 0.470102 | 4.3:+23867883 | None:intergenic |
| AAGCCTTCTTTGCTGTGTTG+TGG | 0.473030 | 4.3:+23869068 | None:intergenic |
| GTTCTACTTCCTTCTTCAGA+AGG | 0.473358 | 4.3:-23862944 | MS.gene33771:CDS |
| TCATCCTCATCAAATGCAAA+GGG | 0.473724 | 4.3:+23864630 | None:intergenic |
| AACAGGGACACCTTCAGTAA+AGG | 0.474820 | 4.3:+23864953 | None:intergenic |
| TCTAAGTGGGACCTACTATC+GGG | 0.476412 | 4.3:-23864597 | MS.gene33771:CDS |
| TTCTTCAGAAGGCTTGGACC+AGG | 0.476652 | 4.3:-23862933 | MS.gene33771:CDS |
| GGCCAGCGATGATTCTGAAC+TGG | 0.476713 | 4.3:-23866024 | MS.gene33771:CDS |
| ACTCATTTGCTTGGAATGAA+AGG | 0.476771 | 4.3:-23866334 | MS.gene33771:CDS |
| GTGGTTAACATTGCTGACTA+TGG | 0.479297 | 4.3:-23867616 | MS.gene33771:CDS |
| CATCAAATGCAAAGGGATCA+TGG | 0.479401 | 4.3:+23864913 | None:intergenic |
| AGGATCAATTCATCCACATC+TGG | 0.481164 | 4.3:-23865050 | MS.gene33771:CDS |
| AATCGGGGTAGAGTGGGTCT+TGG | 0.482811 | 4.3:+23869379 | None:intergenic |
| AGGTGTCCCTGTTGTAGTCT+TGG | 0.484408 | 4.3:-23864943 | MS.gene33771:CDS |
| ACTAGTTAAAATGTAGAAAA+GGG | 0.486321 | 4.3:+23868667 | None:intergenic |
| TCTGGTGCTGTACGGAAGAC+TGG | 0.486444 | 4.3:-23866993 | MS.gene33771:CDS |
| TGCTGTTCTACAAGGAGAAA+AGG | 0.486486 | 4.3:-23862534 | MS.gene33771:CDS |
| TTGGGATTGGGAAAGGGAAA+GGG | 0.486542 | 4.3:+23869404 | None:intergenic |
| TCATCGCTGGCCATAAAGAA+AGG | 0.486705 | 4.3:+23866035 | None:intergenic |
| CCGAGCACATGTCAATAGTT+GGG | 0.486788 | 4.3:+23865142 | None:intergenic |
| TCCGGCGACGTCGACGTTGA+TGG | 0.486979 | 4.3:-23869217 | MS.gene33771:CDS |
| ATGGCAAAGACAATAGTTGA+TGG | 0.488358 | 4.3:-23868740 | MS.gene33771:CDS |
| AAATCCCTTGAGAACTGAAA+AGG | 0.489413 | 4.3:-23864075 | MS.gene33771:CDS |
| GATCAGTTAAGAGACTATAA+AGG | 0.490599 | 4.3:-23866002 | MS.gene33771:intron |
| CTTGGACCAGGAGGTTCGGC+GGG | 0.491437 | 4.3:-23862921 | MS.gene33771:CDS |
| AGAAGGCTTCTTCGTTCTCA+AGG | 0.491687 | 4.3:-23869054 | MS.gene33771:CDS |
| TACGTCGTCGTTTAGGGAAG+AGG | 0.493043 | 4.3:+23869434 | None:intergenic |
| ACCTGTGTTGGACAGATTTG+TGG | 0.497785 | 4.3:-23862296 | None:intergenic |
| TTAGATGCCTATCACATAGA+TGG | 0.498416 | 4.3:+23864051 | None:intergenic |
| TGGTCCAAGCCTTCTGAAGA+AGG | 0.498478 | 4.3:+23862935 | None:intergenic |
| ATTGTCATTAAAATGCTCTC+AGG | 0.500925 | 4.3:-23866262 | MS.gene33771:intron |
| GTCAACCAATTCGGATCAGA+AGG | 0.501857 | 4.3:-23869122 | MS.gene33771:CDS |
| GCAGGAGTTTGGCGAGATGA+TGG | 0.504193 | 4.3:-23869190 | MS.gene33771:CDS |
| TCTCCTTGTAGAACAGCAGC+AGG | 0.505321 | 4.3:+23862539 | None:intergenic |
| ATTGGGATTGGGAAAGGGAA+AGG | 0.507457 | 4.3:+23869403 | None:intergenic |
| TTCTAGATCTATGTCTGCGT+CGG | 0.512413 | 4.3:-23866097 | MS.gene33771:intron |
| AACCACTTTGGGCATAACTC+TGG | 0.515359 | 4.3:+23867633 | None:intergenic |
| ACTATTGACATGTGCTCGGT+TGG | 0.517595 | 4.3:-23865138 | MS.gene33771:CDS |
| CTCTAAGTGGGACCTACTAT+CGG | 0.518152 | 4.3:-23864598 | MS.gene33771:CDS |
| AGAAGTTTCGAGCCAAGACT+TGG | 0.519231 | 4.3:+23867804 | None:intergenic |
| TGAAAGTGAGGCGGGAGCTG+GGG | 0.520144 | 4.3:-23862855 | MS.gene33771:CDS |
| ACATAGCCTCCAACCCTCCA+TGG | 0.523096 | 4.3:+23864162 | None:intergenic |
| GGAAGCTGAGAAAATGATTG+TGG | 0.525325 | 4.3:-23862513 | MS.gene33771:CDS |
| TCGTTACAGACTCATTTGCT+TGG | 0.526301 | 4.3:-23866343 | MS.gene33771:intron |
| TAACATCCCGCCGAACCTCC+TGG | 0.526713 | 4.3:+23862915 | None:intergenic |
| AAAGACAAAGCACCAAGTCT+TGG | 0.528110 | 4.3:-23867816 | MS.gene33771:CDS |
| GGCACTTAAGAAGCAAGGTT+AGG | 0.528234 | 4.3:+23866582 | None:intergenic |
| TAGCATTTCTTTCCACGGAA+AGG | 0.528323 | 4.3:-23862469 | MS.gene33771:intron |
| AACCAGGGTGAAAGTGAGGC+GGG | 0.528592 | 4.3:-23862863 | MS.gene33771:CDS |
| TCCATCAACGTCGACGTCGC+CGG | 0.529306 | 4.3:+23869216 | None:intergenic |
| GGAAGAGGATGAATACGTTC+CGG | 0.529989 | 4.3:+23869449 | None:intergenic |
| CCACGTCCCTAAGTAGTTCG+AGG | 0.530299 | 4.3:-23864710 | MS.gene33771:CDS |
| TTGCCTCCTTACTGCTGTCA+AGG | 0.531934 | 4.3:-23864409 | MS.gene33771:intron |
| CTTCAGGCACTTAAGAAGCA+AGG | 0.532826 | 4.3:+23866577 | None:intergenic |
| ATCATCCTCATCAAATGCAA+AGG | 0.533512 | 4.3:+23864629 | None:intergenic |
| GATGACGGTGAGCTGAAAGA+AGG | 0.533860 | 4.3:+23864116 | None:intergenic |
| GTTAGAATTCTTAATAGAAG+AGG | 0.534143 | 4.3:+23865178 | None:intergenic |
| ATCAGCTCCGTAAAAGACAA+TGG | 0.535349 | 4.3:+23866289 | None:intergenic |
| GTCATTAAGCTTGTTATCAA+CGG | 0.536873 | 4.3:+23866058 | None:intergenic |
| GCTCTTGATGGGCTTCGGAA+AGG | 0.538706 | 4.3:-23869144 | MS.gene33771:CDS |
| GCTTCTAGCATTTCTTTCCA+CGG | 0.540958 | 4.3:-23862474 | MS.gene33771:CDS |
| GATCCTGCTGCTGTTCTACA+AGG | 0.541132 | 4.3:-23862542 | MS.gene33771:CDS |
| GCTTGGACCAGGAGGTTCGG+CGG | 0.541959 | 4.3:-23862922 | MS.gene33771:CDS |
| AGTCAAGAAGAGTCAAGTGA+TGG | 0.542611 | 4.3:-23864492 | MS.gene33771:CDS |
| ATGATATTGCGCCCTCTAAG+TGG | 0.550332 | 4.3:-23864611 | MS.gene33771:CDS |
| GTCATCCTCATCAAATGCAA+AGG | 0.550505 | 4.3:+23864905 | None:intergenic |
| TCATCCTCATCAAATGCAAA+GGG | 0.551115 | 4.3:+23864906 | None:intergenic |
| GTAGCAGCTGCAAGATTGCT+GGG | 0.551550 | 4.3:+23868689 | None:intergenic |
| AACATTGCTGACTATGGAGA+AGG | 0.554008 | 4.3:-23867610 | MS.gene33771:CDS |
| GAGGCAATCAGTTAGAAGGC+TGG | 0.554722 | 4.3:+23864425 | None:intergenic |
| CTCAAGATTCTTCCTCTCAG+TGG | 0.555445 | 4.3:-23869344 | MS.gene33771:CDS |
| AGCAAGTCTTGTACCTGTGT+TGG | 0.555893 | 4.3:-23862308 | MS.gene33771:CDS |
| GAATTACAATGGTGTGGAGA+GGG | 0.556952 | 4.3:-23865201 | MS.gene33771:CDS |
| AAGAATGTTCCCTTTACTGA+AGG | 0.558436 | 4.3:-23864963 | MS.gene33771:CDS |
| AAAATACCTTGACAGCAGTA+AGG | 0.558563 | 4.3:+23864403 | None:intergenic |
| AAAGCGAAATCGGGGTAGAG+TGG | 0.559686 | 4.3:+23869372 | None:intergenic |
| GTCGACGTTGATGGAGGCGC+AGG | 0.560181 | 4.3:-23869208 | MS.gene33771:CDS |
| GTGGTCGACGGGAGCCAAAG+AGG | 0.560430 | 4.3:-23869275 | MS.gene33771:CDS |
| CAGAAACCTCTGGTGCTGTA+CGG | 0.570807 | 4.3:-23867001 | MS.gene33771:CDS |
| AATTGCTGCCCATGGAGGGT+TGG | 0.571145 | 4.3:-23864171 | MS.gene33771:CDS |
| ATGACGGTGAGCTGAAAGAA+GGG | 0.571829 | 4.3:+23864117 | None:intergenic |
| CCCAACTATTGACATGTGCT+CGG | 0.574965 | 4.3:-23865142 | MS.gene33771:CDS |
| TTTATCTGAGCAAAGGATGA+CGG | 0.575426 | 4.3:+23864101 | None:intergenic |
| CTCCCGCCTCACTTTCACCC+TGG | 0.576417 | 4.3:+23862861 | None:intergenic |
| TGGTCGACGGGAGCCAAAGA+GGG | 0.577988 | 4.3:-23869274 | MS.gene33771:CDS |
| GCTTGTAAATCTGGTTGAGA+AGG | 0.578725 | 4.3:-23863988 | MS.gene33771:CDS |
| AGATCCATTTGCATTTGATG+AGG | 0.578867 | 4.3:-23864772 | MS.gene33771:CDS |
| CAATTAATTGCTGCCCATGG+AGG | 0.579731 | 4.3:-23864176 | MS.gene33771:CDS |
| AGACCCCTTTGCATTTGATG+AGG | 0.581163 | 4.3:-23864634 | MS.gene33771:CDS |
| GAAGGCTTCTTCGTTCTCAA+GGG | 0.581373 | 4.3:-23869053 | MS.gene33771:intron |
| GAATTGTCATTCAGATCTGA+AGG | 0.585420 | 4.3:-23866907 | MS.gene33771:intron |
| TGATATTGCGCCCTCTAAGT+GGG | 0.585660 | 4.3:-23864610 | MS.gene33771:CDS |
| CATCGCTGGCCATAAAGAAA+GGG | 0.587555 | 4.3:+23866036 | None:intergenic |
| CATAGCCTCCAACCCTCCAT+GGG | 0.588009 | 4.3:+23864163 | None:intergenic |
| GAAAGGAAAGTTGAGTCCTA+AGG | 0.588906 | 4.3:-23866317 | MS.gene33771:CDS |
| GTAAATCTGGTTGAGAAGGA+TGG | 0.589105 | 4.3:-23863984 | MS.gene33771:CDS |
| TCAGTTTACGAGAAGTACCC+CGG | 0.590409 | 4.3:-23864817 | MS.gene33771:CDS |
| GTATCAGTAGTTGATGTGCT+AGG | 0.592926 | 4.3:+23865089 | None:intergenic |
| ATCCAGTTCAGAATCATCGC+TGG | 0.594748 | 4.3:+23866022 | None:intergenic |
| AGCTTGTTATCAACGGACAC+AGG | 0.596570 | 4.3:+23866065 | None:intergenic |
| GCATCTAACTGACCACGAGT+TGG | 0.597868 | 4.3:-23864036 | MS.gene33771:CDS |
| CAGTAGGAATTACAATGGTG+TGG | 0.598823 | 4.3:-23865207 | MS.gene33771:CDS |
| AAGCGAAATCGGGGTAGAGT+GGG | 0.599359 | 4.3:+23869373 | None:intergenic |
| ATAAGAAGTTCACCTTTCCG+TGG | 0.602713 | 4.3:+23862457 | None:intergenic |
| AATTAATTGCTGCCCATGGA+GGG | 0.603684 | 4.3:-23864175 | MS.gene33771:CDS |
| TGATCCCTTTGCATTTGATG+AGG | 0.604280 | 4.3:-23864910 | MS.gene33771:CDS |
| TTCAGAAGGCTTGGACCAGG+AGG | 0.605157 | 4.3:-23862930 | MS.gene33771:CDS |
| GATAGTAGGTCCCACTTAGA+GGG | 0.607332 | 4.3:+23864600 | None:intergenic |
| GTCAAGAAGAGTCAAGTGAT+GGG | 0.610912 | 4.3:-23864491 | MS.gene33771:CDS |
| GGCTAACCAGGGTGAAAGTG+AGG | 0.611463 | 4.3:-23862867 | MS.gene33771:CDS |
| ATTAGAAATTTAACACAACA+AGG | 0.611971 | 4.3:+23867873 | None:intergenic |
| TACTTGTGTACAGAAACCTC+TGG | 0.614836 | 4.3:-23867011 | MS.gene33771:intron |
| CCTCGAACTACTTAGGGACG+TGG | 0.619708 | 4.3:+23864710 | None:intergenic |
| TCACTTTAAGGAACGTACCC+CGG | 0.622558 | 4.3:-23864679 | MS.gene33771:CDS |
| ATACATACTCACTAAAGATG+AGG | 0.627563 | 4.3:-23865070 | MS.gene33771:CDS |
| ACTACTGCAAGAACCAGATG+TGG | 0.629778 | 4.3:+23865037 | None:intergenic |
| AGTCTTCCGTACAGCACCAG+AGG | 0.630144 | 4.3:+23866995 | None:intergenic |
| GATGATGGAGCAAAATGATG+AGG | 0.630944 | 4.3:-23869175 | MS.gene33771:CDS |
| ATCGTCGATTGAATTGGGGT+CGG | 0.632919 | 4.3:+23869308 | None:intergenic |
| CAAAATCGTCGATTGAATTG+GGG | 0.633287 | 4.3:+23869304 | None:intergenic |
| GGCGACGTCGACGTTGATGG+AGG | 0.633323 | 4.3:-23869214 | MS.gene33771:CDS |
| GACCAGAGTTATGCCCAAAG+TGG | 0.635018 | 4.3:-23867635 | MS.gene33771:CDS |
| GGAATTACAATGGTGTGGAG+AGG | 0.637221 | 4.3:-23865202 | MS.gene33771:CDS |
| ACCACAAATCTGTCCAACAC+AGG | 0.637664 | 4.3:+23862295 | None:intergenic |
| TAACCAGGGTGAAAGTGAGG+CGG | 0.641799 | 4.3:-23862864 | MS.gene33771:CDS |
| TGTCAATTAATTGCTGCCCA+TGG | 0.645816 | 4.3:-23864179 | MS.gene33771:CDS |
| GATTGTCAGCAATTGCTGCA+CGG | 0.645862 | 4.3:+23862347 | None:intergenic |
| GTTATCAACGGACACAGGAG+AGG | 0.648725 | 4.3:+23866070 | None:intergenic |
| TCAACCAATTCGGATCAGAA+GGG | 0.657859 | 4.3:-23869121 | MS.gene33771:CDS |
| TGAAGAAGGAAGTAGAACAC+TGG | 0.658167 | 4.3:+23862949 | None:intergenic |
| ATACCTTGACAGCAGTAAGG+AGG | 0.658288 | 4.3:+23864406 | None:intergenic |
| CAACGTGTCAGAATAACAGT+GGG | 0.658807 | 4.3:-23867665 | MS.gene33771:CDS |
| AGTTCCAGTAGGAATTACAA+TGG | 0.660824 | 4.3:-23865212 | MS.gene33771:CDS |
| GCATTTGATGAGGATGACAG+TGG | 0.664713 | 4.3:-23864900 | MS.gene33771:CDS |
| GCAACGTGTCAGAATAACAG+TGG | 0.667678 | 4.3:-23867666 | MS.gene33771:CDS |
| GAGAAGAGAAAGCGAAATCG+GGG | 0.669206 | 4.3:+23869364 | None:intergenic |
| TATCTTCCAAGATTACAACC+GGG | 0.672434 | 4.3:+23864661 | None:intergenic |
| TATCTTCCAAGATTACAACC+GGG | 0.672434 | 4.3:+23864799 | None:intergenic |
| CAACAAGAAAATCCAACTCG+TGG | 0.673146 | 4.3:+23864024 | None:intergenic |
| ATCGAAGAAAGACCACTGAG+AGG | 0.674356 | 4.3:+23869332 | None:intergenic |
| CTATATCCATTAGTTCCAGT+AGG | 0.678113 | 4.3:-23865223 | MS.gene33771:CDS |
| CTAAGTGGGACCTACTATCG+GGG | 0.685030 | 4.3:-23864596 | MS.gene33771:CDS |
| ATCTTCCAAGATTACAACCG+GGG | 0.696587 | 4.3:+23864662 | None:intergenic |
| ATCTTCCAAGATTACAACCG+GGG | 0.696587 | 4.3:+23864800 | None:intergenic |
| GCATTTGATGAGGATGACAG+TGG | 0.696947 | 4.3:-23864762 | MS.gene33771:CDS |
| CATCCTCATCAAATGCAAAG+GGG | 0.707305 | 4.3:+23864631 | None:intergenic |
| GGTGCTGTACGGAAGACTGG+TGG | 0.712043 | 4.3:-23866990 | MS.gene33771:CDS |
| CAGCTCCGTAAAAGACAATG+GGG | 0.716546 | 4.3:+23866291 | None:intergenic |
| TATCTTCCAAGACTACAACA+GGG | 0.759615 | 4.3:+23864937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23862297 | 23869511 | 23862297 | ID=MS.gene33771 |
| chr4.3 | mRNA | 23862297 | 23869511 | 23862297 | ID=MS.gene33771.t1;Parent=MS.gene33771 |
| chr4.3 | exon | 23869054 | 23869511 | 23869054 | ID=MS.gene33771.t1.exon1;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23869054 | 23869511 | 23869054 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23868664 | 23868763 | 23868664 | ID=MS.gene33771.t1.exon2;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23868664 | 23868763 | 23868664 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23867583 | 23867922 | 23867583 | ID=MS.gene33771.t1.exon3;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23867583 | 23867922 | 23867583 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23866908 | 23867020 | 23866908 | ID=MS.gene33771.t1.exon4;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23866908 | 23867020 | 23866908 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23866538 | 23866666 | 23866538 | ID=MS.gene33771.t1.exon5;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23866538 | 23866666 | 23866538 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23866263 | 23866356 | 23866263 | ID=MS.gene33771.t1.exon6;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23866263 | 23866356 | 23866263 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23866003 | 23866113 | 23866003 | ID=MS.gene33771.t1.exon7;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23866003 | 23866113 | 23866003 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23864410 | 23865254 | 23864410 | ID=MS.gene33771.t1.exon8;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23864410 | 23865254 | 23864410 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23863975 | 23864237 | 23863975 | ID=MS.gene33771.t1.exon9;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23863975 | 23864237 | 23863975 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23862835 | 23862988 | 23862835 | ID=MS.gene33771.t1.exon10;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23862835 | 23862988 | 23862835 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23862470 | 23862567 | 23862470 | ID=MS.gene33771.t1.exon11;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23862470 | 23862567 | 23862470 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| chr4.3 | exon | 23862297 | 23862378 | 23862297 | ID=MS.gene33771.t1.exon12;Parent=MS.gene33771.t1 |
| chr4.3 | CDS | 23862297 | 23862378 | 23862297 | ID=cds.MS.gene33771.t1;Parent=MS.gene33771.t1 |
| Gene Sequence |
| Protein sequence |
