Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052633.t1 | XP_013460975.1 | 99.4 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 1.40E-88 | 335.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052633.t1 | Q7ZVZ7 | 48.1 | 162 | 76 | 4 | 6 | 159 | 27 | 188 | 1.4e-31 | 137.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052633.t1 | B7FM37 | 99.4 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 1.0e-88 | 335.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052632 | MS.gene052633 | 0.843122 | 1.70E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052633.t1 | MTR_3g075410 | 98.788 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 2.55e-118 | 339 |
| MS.gene052633.t1 | MTR_7g032640 | 83.636 | 165 | 27 | 0 | 1 | 165 | 1 | 165 | 1.95e-97 | 286 |
| MS.gene052633.t1 | MTR_7g017430 | 72.727 | 165 | 45 | 0 | 1 | 165 | 1 | 165 | 1.26e-80 | 243 |
| MS.gene052633.t1 | MTR_6g018930 | 63.483 | 178 | 51 | 2 | 1 | 165 | 1 | 177 | 6.21e-74 | 226 |
| MS.gene052633.t1 | MTR_8g037335 | 60.588 | 170 | 62 | 2 | 1 | 165 | 1 | 170 | 7.10e-71 | 217 |
| MS.gene052633.t1 | MTR_5g029210 | 60.588 | 170 | 62 | 2 | 1 | 165 | 1 | 170 | 1.93e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052633.t1 | AT4G24760 | 84.848 | 165 | 25 | 0 | 1 | 165 | 1 | 165 | 2.63e-104 | 303 |
| MS.gene052633.t1 | AT5G14390 | 83.735 | 166 | 27 | 0 | 1 | 166 | 1 | 166 | 4.06e-103 | 300 |
| MS.gene052633.t1 | AT3G01690 | 80.000 | 165 | 33 | 0 | 1 | 165 | 1 | 165 | 3.70e-99 | 290 |
| MS.gene052633.t1 | AT3G30380 | 69.880 | 166 | 47 | 2 | 1 | 165 | 1 | 164 | 4.85e-79 | 239 |
| MS.gene052633.t1 | AT3G30380 | 69.880 | 166 | 47 | 2 | 1 | 165 | 1 | 164 | 1.03e-78 | 239 |
| MS.gene052633.t1 | AT5G38220 | 65.868 | 167 | 55 | 2 | 1 | 167 | 1 | 165 | 3.44e-77 | 230 |
| MS.gene052633.t1 | AT5G38220 | 66.667 | 165 | 53 | 2 | 1 | 165 | 1 | 163 | 2.65e-76 | 231 |
| MS.gene052633.t1 | AT5G38220 | 66.667 | 165 | 53 | 2 | 1 | 165 | 1 | 163 | 2.65e-76 | 231 |
| MS.gene052633.t1 | AT1G66900 | 66.867 | 166 | 54 | 1 | 1 | 165 | 1 | 166 | 3.26e-76 | 229 |
| MS.gene052633.t1 | AT4G31020 | 61.677 | 167 | 64 | 0 | 1 | 167 | 1 | 167 | 5.22e-72 | 219 |
| MS.gene052633.t1 | AT4G31020 | 61.677 | 167 | 64 | 0 | 1 | 167 | 1 | 167 | 5.22e-72 | 219 |
| MS.gene052633.t1 | AT1G13610 | 64.497 | 169 | 55 | 3 | 1 | 165 | 1 | 168 | 1.44e-71 | 220 |
| MS.gene052633.t1 | AT2G24320 | 58.182 | 165 | 68 | 1 | 1 | 165 | 1 | 164 | 5.21e-66 | 203 |
| MS.gene052633.t1 | AT1G32190 | 56.322 | 174 | 67 | 1 | 1 | 165 | 1 | 174 | 3.88e-64 | 202 |
| MS.gene052633.t1 | AT2G24320 | 57.595 | 158 | 66 | 1 | 8 | 165 | 1 | 157 | 3.02e-62 | 194 |
| MS.gene052633.t1 | AT1G32190 | 75.000 | 52 | 13 | 0 | 114 | 165 | 38 | 89 | 3.46e-21 | 88.6 |
| MS.gene052633.t1 | AT1G13610 | 70.588 | 51 | 15 | 0 | 115 | 165 | 18 | 68 | 8.11e-18 | 78.2 |
Find 37 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAAGATATAATCCTTTA+TGG | 0.268151 | 3.1:+62557780 | MS.gene052633:CDS |
| CACTTGCGTGTTAATCTCAT+TGG | 0.312709 | 3.1:+62555756 | MS.gene052633:CDS |
| AGTAACAGGTTTGTTGTTGA+TGG | 0.340238 | 3.1:+62555560 | MS.gene052633:CDS |
| ATCCTTTATGGTCAATCTGT+TGG | 0.416151 | 3.1:+62557792 | MS.gene052633:CDS |
| TCCTTTATGGTCAATCTGTT+GGG | 0.417819 | 3.1:+62557793 | MS.gene052633:CDS |
| ATCTCAATTCCACGTCGATT+AGG | 0.419995 | 3.1:-62555624 | None:intergenic |
| CTCATCAAAGAAGAAGTAAC+AGG | 0.422757 | 3.1:+62555546 | MS.gene052633:CDS |
| TGTTGGGAGTGGTCCTACTT+TGG | 0.422954 | 3.1:+62557809 | MS.gene052633:CDS |
| AGTTTGTATGAAGGTGGGTT+TGG | 0.424246 | 3.1:-62555525 | None:intergenic |
| TCTGGCTACGGACAGTCGTC+AGG | 0.439666 | 3.1:+62557592 | MS.gene052633:CDS |
| ACTTGCGTGTTAATCTCATT+GGG | 0.456267 | 3.1:+62555757 | MS.gene052633:CDS |
| TTGTATGAAGGTGGGTTTGG+TGG | 0.474873 | 3.1:-62555522 | None:intergenic |
| AAGTGTCTTGAAGAGAACTA+TGG | 0.478313 | 3.1:+62557750 | MS.gene052633:CDS |
| TCCCAACAGATTGACCATAA+AGG | 0.485033 | 3.1:-62557794 | None:intergenic |
| TTGATGAGTTTGTATGAAGG+TGG | 0.487955 | 3.1:-62555531 | None:intergenic |
| AGAACAACAGCCCCTCAGTC+GGG | 0.492120 | 3.1:-62557850 | None:intergenic |
| AGAGAACTATGGTGCTAAGC+AGG | 0.495083 | 3.1:+62557761 | MS.gene052633:CDS |
| TGCTCGATTACCCCGACTGA+GGG | 0.495335 | 3.1:+62557839 | MS.gene052633:CDS |
| ACAACTGTGCTGTACTCTCA+TGG | 0.498182 | 3.1:+62555681 | MS.gene052633:CDS |
| CATGGAAATGCTGCTGACAT+TGG | 0.511990 | 3.1:+62555699 | MS.gene052633:CDS |
| TGATGAGTTTGTATGAAGGT+GGG | 0.516551 | 3.1:-62555530 | None:intergenic |
| TATGGTCAATCTGTTGGGAG+TGG | 0.517208 | 3.1:+62557798 | MS.gene052633:CDS |
| GGGAGGAGTGACGTCATCAA+TGG | 0.544062 | 3.1:+62555479 | MS.gene052633:CDS |
| GCATGCAGATACGATTACTC+TGG | 0.564063 | 3.1:+62557574 | MS.gene052633:intron |
| GAGAACAACAGCCCCTCAGT+CGG | 0.568933 | 3.1:-62557851 | None:intergenic |
| TCTTTGATGAGTTTGTATGA+AGG | 0.586057 | 3.1:-62555534 | None:intergenic |
| CTGCTCGATTACCCCGACTG+AGG | 0.603928 | 3.1:+62557838 | MS.gene052633:CDS |
| GCATACGTATTATGCTCACT+TGG | 0.606829 | 3.1:-62557708 | None:intergenic |
| CTGGCTACGGACAGTCGTCA+GGG | 0.608648 | 3.1:+62557593 | MS.gene052633:CDS |
| CGAGCAGCAAGATCCAAAGT+AGG | 0.615910 | 3.1:-62557822 | None:intergenic |
| TATGTATGTTCGTCATCCAA+TGG | 0.620144 | 3.1:+62555653 | MS.gene052633:CDS |
| TTGAAATTTCCTAATCGACG+TGG | 0.629349 | 3.1:+62555615 | MS.gene052633:CDS |
| GAACAACAGCCCCTCAGTCG+GGG | 0.629634 | 3.1:-62557849 | None:intergenic |
| CTACGGACAGTCGTCAGGGA+AGG | 0.630140 | 3.1:+62557597 | MS.gene052633:CDS |
| AGATACGATTACTCTGGCTA+CGG | 0.649102 | 3.1:+62557580 | MS.gene052633:intron |
| GCTCGATTACCCCGACTGAG+GGG | 0.671201 | 3.1:+62557840 | MS.gene052633:CDS |
| AGAAGTGCGTAAGCAATGGG+AGG | 0.678812 | 3.1:+62555462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAGACTCAAATTAA+AGG | - | chr3.1:62557046-62557065 | None:intergenic | 15.0% |
| !! | ATTGAAAATTGAAGAAAATA+CGG | - | chr3.1:62555784-62555803 | None:intergenic | 15.0% |
| !!! | GACTTTTCTTTATTAAATTA+AGG | - | chr3.1:62557405-62557424 | None:intergenic | 15.0% |
| !!! | GTTTGTTATAAAAAACTATA+TGG | + | chr3.1:62557514-62557533 | MS.gene052633:intron | 15.0% |
| !!! | TAGGTTAATTTTTTTTTGTT+TGG | + | chr3.1:62555965-62555984 | MS.gene052633:intron | 15.0% |
| !! | AAAAATGAGAACAAAAGAAA+AGG | - | chr3.1:62556494-62556513 | None:intergenic | 20.0% |
| !! | AAAGCAAGGAATTAAATAAA+AGG | - | chr3.1:62556851-62556870 | None:intergenic | 20.0% |
| !! | AAGCAAGGAATTAAATAAAA+GGG | - | chr3.1:62556850-62556869 | None:intergenic | 20.0% |
| !! | AATTAAATAAAAGGGTTTGA+TGG | - | chr3.1:62556842-62556861 | None:intergenic | 20.0% |
| !! | ATGCAAAAAATAGTATATTG+AGG | + | chr3.1:62557138-62557157 | MS.gene052633:intron | 20.0% |
| !! | GCTAGGAATAATATTTAAAT+TGG | + | chr3.1:62556773-62556792 | MS.gene052633:intron | 20.0% |
| !! | GGAATAATATTTAAATTGGT+TGG | + | chr3.1:62556777-62556796 | MS.gene052633:intron | 20.0% |
| !!! | AAAGAAACTGTTTTTTTGAA+AGG | + | chr3.1:62557094-62557113 | MS.gene052633:intron | 20.0% |
| !!! | AGTGTAATTGAAGTATTATA+CGG | - | chr3.1:62557352-62557371 | None:intergenic | 20.0% |
| !!! | CTCATTTTTAGATTTTAGAT+AGG | + | chr3.1:62556505-62556524 | MS.gene052633:intron | 20.0% |
| !!! | GAGTAAATTTTTCAGATAAT+TGG | - | chr3.1:62556330-62556349 | None:intergenic | 20.0% |
| !!! | TCATTAGTTTATGATATGAA+GGG | + | chr3.1:62556080-62556099 | MS.gene052633:intron | 20.0% |
| !!! | TGATTTTGATGTGATTTTTA+GGG | + | chr3.1:62555991-62556010 | MS.gene052633:intron | 20.0% |
| !!! | TTGATTTTGATGTGATTTTT+AGG | + | chr3.1:62555990-62556009 | MS.gene052633:intron | 20.0% |
| ! | AAATTTACTGTAGGGATTTA+AGG | + | chr3.1:62556402-62556421 | MS.gene052633:intron | 25.0% |
| ! | AATTTACTGTAGGGATTTAA+GGG | + | chr3.1:62556403-62556422 | MS.gene052633:intron | 25.0% |
| ! | ACAAAGATCAGCAAATATTA+AGG | - | chr3.1:62556750-62556769 | None:intergenic | 25.0% |
| ! | ACATTAAAATACGAAAACGA+TGG | - | chr3.1:62556283-62556302 | None:intergenic | 25.0% |
| ! | ACTAAGTATTACTAACACTT+TGG | + | chr3.1:62556961-62556980 | MS.gene052633:intron | 25.0% |
| ! | AGATCTAACAAATTTACTGT+AGG | + | chr3.1:62556393-62556412 | MS.gene052633:intron | 25.0% |
| ! | ATTAGTAGAAATGTAGAATG+TGG | + | chr3.1:62556226-62556245 | MS.gene052633:intron | 25.0% |
| ! | CTGTAACTGAATTATCAAAT+GGG | + | chr3.1:62555847-62555866 | MS.gene052633:intron | 25.0% |
| ! | CTTCATATCATAAACTAATG+AGG | - | chr3.1:62556081-62556100 | None:intergenic | 25.0% |
| ! | CTTTAAACAAGTAAATTACC+AGG | - | chr3.1:62555927-62555946 | None:intergenic | 25.0% |
| ! | GATCTAACAAATTTACTGTA+GGG | + | chr3.1:62556394-62556413 | MS.gene052633:intron | 25.0% |
| ! | TCATCTGTTATTGAGTTATT+GGG | - | chr3.1:62556920-62556939 | None:intergenic | 25.0% |
| ! | TCTGTAACTGAATTATCAAA+TGG | + | chr3.1:62555846-62555865 | MS.gene052633:intron | 25.0% |
| ! | TTCATCTGTTATTGAGTTAT+TGG | - | chr3.1:62556921-62556940 | None:intergenic | 25.0% |
| !! | AAACAAGAAAGAAGCATATA+AGG | - | chr3.1:62557629-62557648 | None:intergenic | 25.0% |
| !! | AAGAGAAGCATAATGAAAAA+CGG | + | chr3.1:62557672-62557691 | MS.gene052633:intron | 25.0% |
| !! | CTCATTAGTTTATGATATGA+AGG | + | chr3.1:62556079-62556098 | MS.gene052633:intron | 25.0% |
| !! | GTTAGAAGATAAGGATTTTA+AGG | + | chr3.1:62556150-62556169 | MS.gene052633:intron | 25.0% |
| !! | TAAGGCTAAAACTTAAGTTT+TGG | - | chr3.1:62556732-62556751 | None:intergenic | 25.0% |
| !! | TAATTTTTGTGGTTCTTATG+TGG | + | chr3.1:62556128-62556147 | MS.gene052633:intron | 25.0% |
| !!! | AAACTGTTTTTTTGAAAGGA+TGG | + | chr3.1:62557098-62557117 | MS.gene052633:intron | 25.0% |
| !!! | ACCTTTTAGAATCAATCTAA+GGG | + | chr3.1:62557220-62557239 | MS.gene052633:intron | 25.0% |
| AAATGTAGAATGTGGTGATT+GGG | + | chr3.1:62556234-62556253 | MS.gene052633:intron | 30.0% | |
| ACATTAAAACACGAAAACGA+TGG | - | chr3.1:62556197-62556216 | None:intergenic | 30.0% | |
| ACTGTAAAAGACCATAAAGT+TGG | + | chr3.1:62556597-62556616 | MS.gene052633:intron | 30.0% | |
| AGTGCATTTACTACATGATA+TGG | + | chr3.1:62556571-62556590 | MS.gene052633:intron | 30.0% | |
| ATATGTGAACTCTGCATATT+TGG | - | chr3.1:62557013-62557032 | None:intergenic | 30.0% | |
| CACTTGTTTAGTTGTTAGTT+AGG | + | chr3.1:62556023-62556042 | MS.gene052633:intron | 30.0% | |
| CAGGAAGATATAATCCTTTA+TGG | + | chr3.1:62557780-62557799 | MS.gene052633:CDS | 30.0% | |
| CCATCTAATTACCAACTTTA+TGG | - | chr3.1:62556611-62556630 | None:intergenic | 30.0% | |
| TCTTATGTGGTTAGAAGATA+AGG | + | chr3.1:62556141-62556160 | MS.gene052633:intron | 30.0% | |
| TCTTTGATGAGTTTGTATGA+AGG | - | chr3.1:62555537-62555556 | None:intergenic | 30.0% | |
| TTTGGATTCTTGATATACCA+AGG | + | chr3.1:62556979-62556998 | MS.gene052633:intron | 30.0% | |
| ! | ACCCTTAGATTGATTCTAAA+AGG | - | chr3.1:62557224-62557243 | None:intergenic | 30.0% |
| ! | AGGTTTGATTTAGTCAAAGA+TGG | + | chr3.1:62556043-62556062 | MS.gene052633:intron | 30.0% |
| ! | AGTCAAAGATGGGAAATTTT+TGG | + | chr3.1:62556054-62556073 | MS.gene052633:intron | 30.0% |
| ! | GGTTTGATTTAGTCAAAGAT+GGG | + | chr3.1:62556044-62556063 | MS.gene052633:intron | 30.0% |
| ! | TAGATTGATTCTAAAAGGTG+AGG | - | chr3.1:62557219-62557238 | None:intergenic | 30.0% |
| ! | TCAAAACTTCAACGTTTTCA+CGG | - | chr3.1:62555599-62555618 | None:intergenic | 30.0% |
| !! | AGAAGATAAGGATTTTAAGG+TGG | + | chr3.1:62556153-62556172 | MS.gene052633:intron | 30.0% |
| !! | CCATAAAGTTGGTAATTAGA+TGG | + | chr3.1:62556608-62556627 | MS.gene052633:intron | 30.0% |
| !! | CTATTTTAAAGGGGTCTTTA+GGG | - | chr3.1:62557462-62557481 | None:intergenic | 30.0% |
| !! | TCTTGAATGTTACTTTCATG+TGG | + | chr3.1:62557069-62557088 | MS.gene052633:intron | 30.0% |
| !!! | CACCTTTTAGAATCAATCTA+AGG | + | chr3.1:62557219-62557238 | MS.gene052633:intron | 30.0% |
| AAGTGTCTTGAAGAGAACTA+TGG | + | chr3.1:62557750-62557769 | MS.gene052633:CDS | 35.0% | |
| ACTTGCGTGTTAATCTCATT+GGG | + | chr3.1:62555757-62555776 | MS.gene052633:CDS | 35.0% | |
| AGTATATTGAGGCACAGATA+AGG | + | chr3.1:62557149-62557168 | MS.gene052633:intron | 35.0% | |
| ATCCTTTATGGTCAATCTGT+TGG | + | chr3.1:62557792-62557811 | MS.gene052633:CDS | 35.0% | |
| ATTGAGTTATTGGGCATCTA+AGG | - | chr3.1:62556911-62556930 | None:intergenic | 35.0% | |
| CTCATCAAAGAAGAAGTAAC+AGG | + | chr3.1:62555546-62555565 | MS.gene052633:CDS | 35.0% | |
| GAAATGTAGAATGTGGTGAT+TGG | + | chr3.1:62556233-62556252 | MS.gene052633:intron | 35.0% | |
| GAAGCTTGATTGTAGTGATT+AGG | + | chr3.1:62555946-62555965 | MS.gene052633:intron | 35.0% | |
| GAGCGGTTACATTCAATTTA+GGG | + | chr3.1:62556873-62556892 | MS.gene052633:intron | 35.0% | |
| GGGATTTAAGGGATATGAAA+TGG | + | chr3.1:62556414-62556433 | MS.gene052633:intron | 35.0% | |
| GTATATTGAGGCACAGATAA+GGG | + | chr3.1:62557150-62557169 | MS.gene052633:intron | 35.0% | |
| TATGTATGTTCGTCATCCAA+TGG | + | chr3.1:62555653-62555672 | MS.gene052633:CDS | 35.0% | |
| TCCTTTATGGTCAATCTGTT+GGG | + | chr3.1:62557793-62557812 | MS.gene052633:CDS | 35.0% | |
| TGAGCGGTTACATTCAATTT+AGG | + | chr3.1:62556872-62556891 | MS.gene052633:intron | 35.0% | |
| TGATGAGTTTGTATGAAGGT+GGG | - | chr3.1:62555533-62555552 | None:intergenic | 35.0% | |
| TTAATTCCTTGCTTTGTGAG+CGG | + | chr3.1:62556856-62556875 | MS.gene052633:intron | 35.0% | |
| TTCACAAGTAGGAGTAATGT+TGG | + | chr3.1:62557175-62557194 | MS.gene052633:intron | 35.0% | |
| TTGAAATTTCCTAATCGACG+TGG | + | chr3.1:62555615-62555634 | MS.gene052633:CDS | 35.0% | |
| TTGATGAGTTTGTATGAAGG+TGG | - | chr3.1:62555534-62555553 | None:intergenic | 35.0% | |
| ! | AATCAATCTAAGGGTATGCT+TGG | + | chr3.1:62557229-62557248 | MS.gene052633:intron | 35.0% |
| ! | ATCAATCTAAGGGTATGCTT+GGG | + | chr3.1:62557230-62557249 | MS.gene052633:intron | 35.0% |
| ! | TCAGATGTATGAGCTTTTTG+TGG | + | chr3.1:62555722-62555741 | MS.gene052633:CDS | 35.0% |
| ! | TTTAGGGTATGTTTGGATGA+GGG | - | chr3.1:62557446-62557465 | None:intergenic | 35.0% |
| !! | AAAGACCCCTTTAAAATAGC+TGG | + | chr3.1:62557463-62557482 | MS.gene052633:intron | 35.0% |
| !! | AAGCAAGCCAGCTATTTTAA+AGG | - | chr3.1:62557473-62557492 | None:intergenic | 35.0% |
| !! | AGCAAGCCAGCTATTTTAAA+GGG | - | chr3.1:62557472-62557491 | None:intergenic | 35.0% |
| !! | AGTAACAGGTTTGTTGTTGA+TGG | + | chr3.1:62555560-62555579 | MS.gene052633:CDS | 35.0% |
| !! | GCTATTTTAAAGGGGTCTTT+AGG | - | chr3.1:62557463-62557482 | None:intergenic | 35.0% |
| !! | TAATGTGCTGATTGTGATGT+TGG | + | chr3.1:62556297-62556316 | MS.gene052633:intron | 35.0% |
| AATTTCAGTGCCACACATCA+TGG | + | chr3.1:62556466-62556485 | MS.gene052633:intron | 40.0% | |
| AGATAAGGGAGTTCACAAGT+AGG | + | chr3.1:62557164-62557183 | MS.gene052633:intron | 40.0% | |
| AGATACGATTACTCTGGCTA+CGG | + | chr3.1:62557580-62557599 | MS.gene052633:intron | 40.0% | |
| ATGTGGTGATTGGGAGATAT+TGG | + | chr3.1:62556243-62556262 | MS.gene052633:intron | 40.0% | |
| ATTTACCTGCAGGAATTGGA+AGG | + | chr3.1:62556439-62556458 | MS.gene052633:intron | 40.0% | |
| CACTTGCGTGTTAATCTCAT+TGG | + | chr3.1:62555756-62555775 | MS.gene052633:CDS | 40.0% | |
| CATATTTGGATGTGCATCCT+TGG | - | chr3.1:62556999-62557018 | None:intergenic | 40.0% | |
| GCATACGTATTATGCTCACT+TGG | - | chr3.1:62557711-62557730 | None:intergenic | 40.0% | |
| GTGACATTAGTTGAGCTCAA+TGG | + | chr3.1:62556655-62556674 | MS.gene052633:intron | 40.0% | |
| TAACTTAGTGGGATAAGGCT+TGG | + | chr3.1:62556361-62556380 | MS.gene052633:intron | 40.0% | |
| TAGCAATCCCCTAACTTAGT+GGG | + | chr3.1:62556350-62556369 | MS.gene052633:intron | 40.0% | |
| TCCCAACAGATTGACCATAA+AGG | - | chr3.1:62557797-62557816 | None:intergenic | 40.0% | |
| TTCCAATTCCTGCAGGTAAA+TGG | - | chr3.1:62556440-62556459 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCCACTAAGTT+AGG | - | chr3.1:62556362-62556381 | None:intergenic | 40.0% |
| ! | AGCCTTATCCCACTAAGTTA+GGG | - | chr3.1:62556361-62556380 | None:intergenic | 40.0% |
| ! | AGTTTGTATGAAGGTGGGTT+TGG | - | chr3.1:62555528-62555547 | None:intergenic | 40.0% |
| ! | ATCTCAATTCCACGTCGATT+AGG | - | chr3.1:62555627-62555646 | None:intergenic | 40.0% |
| ! | GTATGTTTGGATGAGGGTTT+TGG | - | chr3.1:62557440-62557459 | None:intergenic | 40.0% |
| ! | TATGCTTGGGAGTTGAGTTT+TGG | + | chr3.1:62557243-62557262 | MS.gene052633:intron | 40.0% |
| !! | CTTTAGGGTATGTTTGGATG+AGG | - | chr3.1:62557447-62557466 | None:intergenic | 40.0% |
| !! | GCAAGCCAGCTATTTTAAAG+GGG | - | chr3.1:62557471-62557490 | None:intergenic | 40.0% |
| !!! | TTGGGAGTTGAGTTTTGGAT+GGG | + | chr3.1:62557248-62557267 | MS.gene052633:intron | 40.0% |
| ACAACTGTGCTGTACTCTCA+TGG | + | chr3.1:62555681-62555700 | MS.gene052633:CDS | 45.0% | |
| AGAAAAGGAGCCATGATGTG+TGG | - | chr3.1:62556479-62556498 | None:intergenic | 45.0% | |
| AGGTGAGGATCTAACGAGTA+CGG | - | chr3.1:62557204-62557223 | None:intergenic | 45.0% | |
| ATGTAACCGCTCACAAAGCA+AGG | - | chr3.1:62556865-62556884 | None:intergenic | 45.0% | |
| CATGGAAATGCTGCTGACAT+TGG | + | chr3.1:62555699-62555718 | MS.gene052633:CDS | 45.0% | |
| CTAGCAATCCCCTAACTTAG+TGG | + | chr3.1:62556349-62556368 | MS.gene052633:intron | 45.0% | |
| GCATGCAGATACGATTACTC+TGG | + | chr3.1:62557574-62557593 | MS.gene052633:intron | 45.0% | |
| GCCTTATCCCACTAAGTTAG+GGG | - | chr3.1:62556360-62556379 | None:intergenic | 45.0% | |
| TATGGTCAATCTGTTGGGAG+TGG | + | chr3.1:62557798-62557817 | MS.gene052633:CDS | 45.0% | |
| TCCCCTAACTTAGTGGGATA+AGG | + | chr3.1:62556356-62556375 | MS.gene052633:intron | 45.0% | |
| TGAAACCTTCCAATTCCTGC+AGG | - | chr3.1:62556447-62556466 | None:intergenic | 45.0% | |
| TGAAATGGCCATTTACCTGC+AGG | + | chr3.1:62556429-62556448 | MS.gene052633:intron | 45.0% | |
| ! | ACTTCAACGTTTTCACGGTG+TGG | - | chr3.1:62555594-62555613 | None:intergenic | 45.0% |
| ! | AGAGAACTATGGTGCTAAGC+AGG | + | chr3.1:62557761-62557780 | MS.gene052633:CDS | 45.0% |
| ! | CAGGAAGTGCATATGGTTCA+TGG | + | chr3.1:62556694-62556713 | MS.gene052633:intron | 45.0% |
| ! | CTTCAACGTTTTCACGGTGT+GGG | - | chr3.1:62555593-62555612 | None:intergenic | 45.0% |
| ! | TTGCTGATCTTTGTGCTGCT+AGG | + | chr3.1:62556756-62556775 | MS.gene052633:intron | 45.0% |
| ! | TTGTATGAAGGTGGGTTTGG+TGG | - | chr3.1:62555525-62555544 | None:intergenic | 45.0% |
| !! | AGCACAGTTGTTTTCGCCAT+TGG | - | chr3.1:62555672-62555691 | None:intergenic | 45.0% |
| !! | AGGGGTCTTTAGGGTATGTT+TGG | - | chr3.1:62557453-62557472 | None:intergenic | 45.0% |
| !! | TGTTTGGATGAGGGTTTTGG+AGG | - | chr3.1:62557437-62557456 | None:intergenic | 45.0% |
| !!! | CTTGGGAGTTGAGTTTTGGA+TGG | + | chr3.1:62557247-62557266 | MS.gene052633:intron | 45.0% |
| !!! | GAGTTGAGTTTTGGATGGGA+GGG | + | chr3.1:62557252-62557271 | MS.gene052633:intron | 45.0% |
| !!! | GTTTGGATGAGGGTTTTGGA+GGG | - | chr3.1:62557436-62557455 | None:intergenic | 45.0% |
| !!! | TTTGGATGAGGGTTTTGGAG+GGG | - | chr3.1:62557435-62557454 | None:intergenic | 45.0% |
| !!! | TATTTTAATTTTAATTTTTG+TGG | + | chr3.1:62556117-62556136 | MS.gene052633:intron | 5.0% |
| CGAGCAGCAAGATCCAAAGT+AGG | - | chr3.1:62557825-62557844 | None:intergenic | 50.0% | |
| GGCCATTTACCTGCAGGAAT+TGG | + | chr3.1:62556435-62556454 | MS.gene052633:intron | 50.0% | |
| GTGGGATAAGGCTTGGATGT+TGG | + | chr3.1:62556368-62556387 | MS.gene052633:intron | 50.0% | |
| TGTTGGGAGTGGTCCTACTT+TGG | + | chr3.1:62557809-62557828 | MS.gene052633:CDS | 50.0% | |
| ! | ACGTTTTCACGGTGTGGGAA+TGG | - | chr3.1:62555588-62555607 | None:intergenic | 50.0% |
| ! | CGTTCTGCAGGAAGTGCATA+TGG | + | chr3.1:62556687-62556706 | MS.gene052633:intron | 50.0% |
| !! | GAGTTGAGTTGACTCAGTCC+TGG | + | chr3.1:62555906-62555925 | MS.gene052633:intron | 50.0% |
| !!! | AGTTTTGGATGGGAGGGCTT+TGG | + | chr3.1:62557258-62557277 | MS.gene052633:intron | 50.0% |
| !!! | GGAGTTGAGTTTTGGATGGG+AGG | + | chr3.1:62557251-62557270 | MS.gene052633:intron | 50.0% |
| AGAACAACAGCCCCTCAGTC+GGG | - | chr3.1:62557853-62557872 | None:intergenic | 55.0% | |
| GAGAACAACAGCCCCTCAGT+CGG | - | chr3.1:62557854-62557873 | None:intergenic | 55.0% | |
| GGGAGGAGTGACGTCATCAA+TGG | + | chr3.1:62555479-62555498 | MS.gene052633:CDS | 55.0% | |
| TGCTCGATTACCCCGACTGA+GGG | + | chr3.1:62557839-62557858 | MS.gene052633:CDS | 55.0% | |
| ! | TGGCGCGTTTTTCGTTCTGC+AGG | + | chr3.1:62556675-62556694 | MS.gene052633:intron | 55.0% |
| ! | TTTGGATGGGAGGGCTTTGG+AGG | + | chr3.1:62557261-62557280 | MS.gene052633:intron | 55.0% |
| !! | TTGGATGGGAGGGCTTTGGA+GGG | + | chr3.1:62557262-62557281 | MS.gene052633:intron | 55.0% |
| !!! | ATGAGGGTTTTGGAGGGGAG+GGG | - | chr3.1:62557430-62557449 | None:intergenic | 55.0% |
| !!! | GATGAGGGTTTTGGAGGGGA+GGG | - | chr3.1:62557431-62557450 | None:intergenic | 55.0% |
| CTACGGACAGTCGTCAGGGA+AGG | + | chr3.1:62557597-62557616 | MS.gene052633:CDS | 60.0% | |
| CTGCTCGATTACCCCGACTG+AGG | + | chr3.1:62557838-62557857 | MS.gene052633:CDS | 60.0% | |
| CTGGCTACGGACAGTCGTCA+GGG | + | chr3.1:62557593-62557612 | MS.gene052633:CDS | 60.0% | |
| GAACAACAGCCCCTCAGTCG+GGG | - | chr3.1:62557852-62557871 | None:intergenic | 60.0% | |
| GCTCGATTACCCCGACTGAG+GGG | + | chr3.1:62557840-62557859 | MS.gene052633:CDS | 60.0% | |
| TCTGGCTACGGACAGTCGTC+AGG | + | chr3.1:62557592-62557611 | MS.gene052633:CDS | 60.0% | |
| !!! | GGATGAGGGTTTTGGAGGGG+AGG | - | chr3.1:62557432-62557451 | None:intergenic | 60.0% |
| !!! | AGGGTTTTGGAGGGGAGGGG+AGG | - | chr3.1:62557427-62557446 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62555477 | 62557878 | 62555477 | ID=MS.gene052633 |
| chr3.1 | mRNA | 62555477 | 62557878 | 62555477 | ID=MS.gene052633.t1;Parent=MS.gene052633 |
| chr3.1 | exon | 62555477 | 62555778 | 62555477 | ID=MS.gene052633.t1.exon1;Parent=MS.gene052633.t1 |
| chr3.1 | CDS | 62555477 | 62555778 | 62555477 | ID=cds.MS.gene052633.t1;Parent=MS.gene052633.t1 |
| chr3.1 | exon | 62557582 | 62557618 | 62557582 | ID=MS.gene052633.t1.exon2;Parent=MS.gene052633.t1 |
| chr3.1 | CDS | 62557582 | 62557618 | 62557582 | ID=cds.MS.gene052633.t1;Parent=MS.gene052633.t1 |
| chr3.1 | exon | 62557708 | 62557878 | 62557708 | ID=MS.gene052633.t1.exon3;Parent=MS.gene052633.t1 |
| chr3.1 | CDS | 62557708 | 62557878 | 62557708 | ID=cds.MS.gene052633.t1;Parent=MS.gene052633.t1 |
| Gene Sequence |
| Protein sequence |
