AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052814

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052814.t1 MTR_4g014070 99.153 118 1 0 13 130 677 794 2.61e-77 243
MS.gene052814.t1 MTR_4g014130 95.349 86 4 0 45 130 1 86 2.14e-55 168
MS.gene052814.t1 MTR_5g083480 72.650 117 32 0 14 130 670 786 3.41e-53 178
MS.gene052814.t1 MTR_5g083480 72.650 117 32 0 14 130 673 789 3.48e-53 178
MS.gene052814.t1 MTR_6g470960 51.000 100 45 2 14 110 550 648 8.73e-26 101
MS.gene052814.t1 MTR_3g093710 45.455 121 60 4 13 128 515 634 1.05e-24 98.2
MS.gene052814.t1 MTR_8g107470 46.535 101 50 2 14 111 547 646 1.73e-24 97.8
MS.gene052814.t1 MTR_7g073710 45.714 105 53 2 13 114 507 610 2.46e-24 97.1
MS.gene052814.t1 MTR_5g078080 43.443 122 62 4 14 129 512 632 5.32e-24 96.3
MS.gene052814.t1 MTR_1g110280 47.170 106 47 3 14 111 534 638 5.34e-24 96.3
MS.gene052814.t1 MTR_5g068210 47.170 106 51 2 14 114 487 592 8.04e-24 95.5
MS.gene052814.t1 MTR_8g099195 47.059 102 50 2 13 111 496 596 8.18e-24 95.5
MS.gene052814.t1 MTR_4g113100 48.515 101 48 2 13 110 518 617 9.07e-24 95.5
MS.gene052814.t1 MTR_3g062500 47.059 102 50 2 13 111 537 637 9.82e-24 95.5
MS.gene052814.t1 MTR_3g062500 47.059 102 50 2 13 111 527 627 1.18e-23 95.1
MS.gene052814.t1 MTR_5g009660 46.078 102 51 2 13 111 473 573 1.63e-23 94.7
MS.gene052814.t1 MTR_3g090665 45.192 104 53 2 13 113 228 330 1.65e-23 93.6
MS.gene052814.t1 MTR_5g075630 47.059 102 50 2 13 111 528 628 1.97e-23 94.7
MS.gene052814.t1 MTR_5g055470 43.000 100 53 2 14 110 509 607 2.77e-22 91.3
MS.gene052814.t1 MTR_2g023150 46.392 97 49 2 17 113 159 252 5.65e-22 87.8
MS.gene052814.t1 MTR_1g028890 44.444 117 54 4 3 111 444 557 5.46e-21 87.4
MS.gene052814.t1 MTR_3g090660 43.269 104 55 2 13 113 494 596 6.58e-21 87.4
MS.gene052814.t1 MTR_7g059225 45.714 105 49 3 14 112 559 661 8.72e-20 84.3
MS.gene052814.t1 MTR_1g061590 39.683 126 61 3 14 125 537 661 1.07e-19 84.0
MS.gene052814.t1 MTR_6g069030 41.667 108 48 4 14 111 506 608 2.27e-19 83.2
MS.gene052814.t1 MTR_3g078250 41.176 102 57 2 12 113 536 634 4.77e-19 82.0
MS.gene052814.t1 MTR_7g103440 36.508 126 65 2 14 125 550 674 1.07e-18 81.3
MS.gene052814.t1 MTR_2g008740 37.600 125 69 3 10 128 284 405 1.37e-18 80.5
MS.gene052814.t1 MTR_1g009270 39.655 116 55 5 4 111 507 615 2.05e-18 80.1
MS.gene052814.t1 MTR_7g059285 38.168 131 72 4 3 130 970 1094 9.75e-16 72.8
MS.gene052814.t1 MTR_3g095100 41.346 104 58 2 10 111 1049 1151 1.05e-15 72.8
MS.gene052814.t1 MTR_5g094380 39.655 116 65 2 14 129 441 551 1.07e-15 72.4
MS.gene052814.t1 MTR_5g045910 38.793 116 62 3 3 116 961 1069 8.35e-15 70.1
MS.gene052814.t1 MTR_2g105900 37.500 112 64 2 10 116 513 623 1.19e-14 69.3
MS.gene052814.t1 MTR_3g090480 38.793 116 62 4 3 113 936 1047 2.31e-14 68.9
MS.gene052814.t1 MTR_1g047670 40.179 112 58 5 3 109 981 1088 2.53e-14 68.6
MS.gene052814.t1 MTR_8g046290 39.450 109 52 4 14 110 244 350 3.73e-14 67.8
MS.gene052814.t1 MTR_6g093050 36.111 108 62 2 10 111 511 617 4.58e-14 67.8
MS.gene052814.t1 MTR_3g110840 35.659 129 69 4 7 130 832 951 4.83e-14 67.8
MS.gene052814.t1 MTR_2g010470 36.697 109 63 3 7 112 862 967 7.47e-14 67.4
MS.gene052814.t1 MTR_2g070020 40.187 107 59 3 3 107 979 1082 1.32e-13 66.6
MS.gene052814.t1 MTR_3g009400 35.043 117 67 3 10 123 1079 1189 1.42e-13 66.6
MS.gene052814.t1 MTR_4g107620 37.383 107 59 3 7 109 484 586 1.89e-13 66.2
MS.gene052814.t1 MTR_6g015190 36.036 111 64 2 7 112 1001 1109 3.19e-13 65.5
MS.gene052814.t1 MTR_6g015265 35.135 111 65 2 7 112 1000 1108 3.88e-13 65.1
MS.gene052814.t1 MTR_1g096260 40.659 91 50 2 17 107 705 791 4.58e-13 65.1
MS.gene052814.t1 MTR_2g072520 35.780 109 65 2 10 115 197 303 5.21e-13 64.3
MS.gene052814.t1 MTR_7g091680 38.393 112 63 3 3 111 778 886 5.24e-13 64.7
MS.gene052814.t1 MTR_4g088320 32.143 112 69 3 3 113 867 972 6.94e-13 64.7
MS.gene052814.t1 MTR_2g090710 34.862 109 64 3 3 110 864 966 1.22e-12 63.9
MS.gene052814.t1 MTR_5g011410 36.000 100 58 2 15 111 790 886 1.54e-12 63.5
MS.gene052814.t1 MTR_5g090100 35.484 124 62 7 3 117 853 967 1.59e-12 63.5
MS.gene052814.t1 MTR_2g016400 36.082 97 57 1 17 113 116 207 1.73e-12 62.0
MS.gene052814.t1 MTR_7g079350 29.310 116 77 2 10 122 534 647 1.88e-12 63.2
MS.gene052814.t1 MTR_3g060880 35.354 99 61 2 17 112 958 1056 1.93e-12 63.2
MS.gene052814.t1 MTR_1g097580 33.945 109 67 1 10 113 939 1047 3.07e-12 62.8
MS.gene052814.t1 MTR_8g087420 33.333 114 66 3 4 111 503 612 3.61e-12 62.4
MS.gene052814.t1 MTR_4g014780 76.471 34 8 0 71 104 48 81 4.28e-12 58.2
MS.gene052814.t1 MTR_4g124990 30.189 106 70 1 10 111 521 626 5.16e-12 62.0
MS.gene052814.t1 MTR_1g038890 30.769 104 69 1 4 107 1026 1126 5.62e-12 62.0
MS.gene052814.t1 MTR_5g096530 36.634 101 61 2 14 111 828 928 5.75e-12 62.0
MS.gene052814.t1 MTR_2g014560 32.143 112 69 3 3 113 861 966 6.01e-12 62.0
MS.gene052814.t1 MTR_1g079520 37.615 109 61 3 3 107 938 1043 8.32e-12 61.6
MS.gene052814.t1 MTR_2g042710 31.731 104 67 1 10 109 524 627 1.06e-11 61.2
MS.gene052814.t1 MTR_1g109580 37.374 99 58 3 15 110 607 704 1.17e-11 60.8
MS.gene052814.t1 MTR_1g096270 37.143 105 59 3 3 107 820 917 1.70e-11 60.5
MS.gene052814.t1 MTR_4g097880 33.871 124 71 5 3 122 859 975 1.78e-11 60.5
MS.gene052814.t1 MTR_2g078810 33.333 105 65 2 10 111 947 1049 1.91e-11 60.5
MS.gene052814.t1 MTR_2g078810 33.333 105 65 2 10 111 967 1069 1.91e-11 60.5
MS.gene052814.t1 MTR_1g039080 31.731 104 68 1 4 107 185 285 2.23e-11 59.7
MS.gene052814.t1 MTR_1g069470 32.203 118 62 4 3 112 874 981 2.33e-11 60.1
MS.gene052814.t1 MTR_5g075650 38.614 101 57 2 10 110 793 888 2.82e-11 60.1
MS.gene052814.t1 MTR_5g014700 35.246 122 69 5 3 121 862 976 3.06e-11 59.7
MS.gene052814.t1 MTR_4g074080 35.577 104 61 3 14 113 542 643 3.31e-11 59.7
MS.gene052814.t1 MTR_1g080440 33.036 112 70 2 3 112 880 988 3.37e-11 59.7
MS.gene052814.t1 MTR_1g040073 37.864 103 59 2 10 109 605 705 4.22e-11 59.3
MS.gene052814.t1 MTR_8g101260 33.019 106 65 3 10 110 512 616 4.68e-11 59.3
MS.gene052814.t1 MTR_7g070200 36.893 103 57 3 15 110 620 721 5.35e-11 58.9
MS.gene052814.t1 MTR_3g110860 31.579 133 81 5 3 130 858 985 5.40e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052814.t1 AT3G51740 80.808 99 19 0 14 112 712 810 6.78e-52 175
MS.gene052814.t1 AT3G08680 46.602 103 52 1 13 112 514 616 3.04e-27 105
MS.gene052814.t1 AT3G08680 46.602 103 52 1 13 112 514 616 3.04e-27 105
MS.gene052814.t1 AT2G26730 43.802 121 60 3 13 130 520 635 2.20e-25 100
MS.gene052814.t1 AT5G58300 42.276 123 64 3 13 129 530 651 1.37e-23 95.1
MS.gene052814.t1 AT5G58300 42.276 123 64 3 13 129 530 651 1.37e-23 95.1
MS.gene052814.t1 AT5G58300 42.276 123 64 3 13 129 530 651 1.37e-23 95.1
MS.gene052814.t1 AT1G68400 45.631 103 50 2 14 111 536 637 1.97e-22 91.7
MS.gene052814.t1 AT1G64210 42.453 106 54 2 13 111 477 582 4.49e-22 90.9
MS.gene052814.t1 AT5G41680 44.554 101 52 2 13 110 228 327 1.39e-21 88.2
MS.gene052814.t1 AT5G41680 44.554 101 52 2 13 110 254 353 1.46e-21 88.2
MS.gene052814.t1 AT2G36570 40.769 130 58 3 14 125 532 660 2.70e-21 88.6
MS.gene052814.t1 AT5G05160 40.952 105 55 2 13 111 514 617 6.00e-21 87.4
MS.gene052814.t1 AT1G48480 39.216 102 59 1 14 112 543 644 2.16e-20 85.9
MS.gene052814.t1 AT3G17840 40.777 103 56 2 14 111 537 639 2.67e-20 85.9
MS.gene052814.t1 AT4G23740 39.837 123 66 3 3 118 495 616 4.33e-20 85.1
MS.gene052814.t1 AT4G23740 39.837 123 66 3 3 118 495 616 4.33e-20 85.1
MS.gene052814.t1 AT3G24660 45.192 104 52 3 14 112 551 654 1.96e-19 83.2
MS.gene052814.t1 AT5G53320 39.604 101 55 2 13 113 478 572 2.02e-18 80.5
MS.gene052814.t1 AT5G24100 38.000 100 60 2 13 111 514 612 6.17e-18 79.0
MS.gene052814.t1 AT3G02880 37.000 100 60 1 14 110 516 615 1.74e-16 74.7
MS.gene052814.t1 AT5G63930 39.062 128 73 3 3 128 911 1035 1.79e-16 74.7
MS.gene052814.t1 AT5G63930 39.062 128 73 3 3 128 975 1099 1.80e-16 74.7
MS.gene052814.t1 AT5G16590 37.000 100 60 1 14 110 514 613 3.63e-16 73.9
MS.gene052814.t1 AT1G17230 38.739 111 63 3 3 111 969 1076 6.73e-16 73.2
MS.gene052814.t1 AT5G07620 41.176 102 55 3 14 110 255 356 7.62e-16 72.8
MS.gene052814.t1 AT3G13380 40.678 118 60 5 10 123 1033 1144 9.47e-16 72.8
MS.gene052814.t1 AT1G17230 38.739 111 63 3 3 111 969 1076 1.00e-15 72.8
MS.gene052814.t1 AT1G08590 38.053 113 64 3 3 112 896 1005 1.60e-15 72.0
MS.gene052814.t1 AT3G19700 42.241 116 54 5 3 112 860 968 1.64e-15 72.0
MS.gene052814.t1 AT4G39400 41.346 104 58 2 10 111 1057 1159 2.18e-15 71.6
MS.gene052814.t1 AT1G55610 37.398 123 71 3 10 128 1035 1155 3.61e-15 71.2
MS.gene052814.t1 AT1G55610 37.398 123 71 3 10 128 1035 1155 3.61e-15 71.2
MS.gene052814.t1 AT5G61480 38.596 114 64 3 3 113 893 1003 6.98e-15 70.5
MS.gene052814.t1 AT1G34420 38.532 109 61 3 3 110 863 966 8.03e-15 70.1
MS.gene052814.t1 AT3G24240 40.517 116 61 3 3 116 963 1072 9.68e-15 69.7
MS.gene052814.t1 AT5G16900 38.532 109 57 4 10 113 560 663 3.87e-14 68.2
MS.gene052814.t1 AT1G78530 36.190 105 64 1 10 111 244 348 4.86e-14 67.4
MS.gene052814.t1 AT5G61570 38.835 103 51 4 14 111 262 357 5.36e-14 67.4
MS.gene052814.t1 AT1G34110 38.393 112 63 3 3 111 945 1053 5.51e-14 67.8
MS.gene052814.t1 AT5G61570 38.835 103 51 4 14 111 265 360 5.68e-14 67.4
MS.gene052814.t1 AT1G34110 38.393 112 63 3 3 111 945 1053 6.69e-14 67.4
MS.gene052814.t1 AT5G16900 38.532 109 57 4 10 113 746 849 7.67e-14 67.4
MS.gene052814.t1 AT5G16900 38.532 109 57 4 10 113 746 849 7.67e-14 67.4
MS.gene052814.t1 AT5G48940 35.294 119 62 4 3 116 964 1072 1.99e-13 66.2
MS.gene052814.t1 AT2G33170 37.273 110 63 4 3 109 995 1101 2.68e-13 65.9
MS.gene052814.t1 AT2G33170 37.273 110 63 4 3 109 995 1101 2.68e-13 65.9
MS.gene052814.t1 AT4G31250 32.743 113 70 3 3 110 529 640 2.87e-13 65.5
MS.gene052814.t1 AT2G41820 35.714 112 66 3 3 111 779 887 8.09e-13 64.3
MS.gene052814.t1 AT5G49770 35.246 122 65 4 10 124 806 920 1.05e-12 63.9
MS.gene052814.t1 AT2G01950 34.188 117 62 2 10 111 1014 1130 1.06e-12 63.9
MS.gene052814.t1 AT5G20690 30.189 106 69 2 10 111 554 658 1.65e-12 63.5
MS.gene052814.t1 AT1G25320 34.513 113 65 4 3 110 591 699 1.80e-12 63.2
MS.gene052814.t1 AT3G20190 36.842 133 72 4 3 129 346 472 1.85e-12 63.2
MS.gene052814.t1 AT3G49670 35.338 133 71 5 3 126 860 986 2.32e-12 63.2
MS.gene052814.t1 AT1G72180 33.333 114 67 4 3 112 855 963 2.61e-12 62.8
MS.gene052814.t1 AT3G20190 36.842 133 72 4 3 129 535 661 5.05e-12 62.0
MS.gene052814.t1 AT4G28650 36.441 118 58 5 3 112 873 981 5.15e-12 62.0
MS.gene052814.t1 AT5G62710 34.579 107 62 3 7 109 482 584 5.27e-12 62.0
MS.gene052814.t1 AT2G24230 33.333 102 62 2 16 113 751 850 5.32e-12 62.0
MS.gene052814.t1 AT1G66830 37.374 99 54 4 15 110 588 681 5.73e-12 62.0
MS.gene052814.t1 AT5G62710 34.579 107 62 3 7 109 448 550 7.27e-12 61.6
MS.gene052814.t1 AT2G07040 33.333 120 68 4 10 122 508 622 1.17e-11 60.8
MS.gene052814.t1 AT3G57830 36.275 102 61 3 15 113 562 662 1.66e-11 60.5
MS.gene052814.t1 AT3G57830 36.275 102 61 3 15 113 562 662 1.66e-11 60.5
MS.gene052814.t1 AT1G33260 31.897 116 69 1 9 114 224 339 2.34e-11 60.1
MS.gene052814.t1 AT1G33260 31.897 116 69 1 9 114 225 340 2.37e-11 60.1
MS.gene052814.t1 AT5G56040 38.776 98 57 2 17 111 944 1041 3.35e-11 59.7
MS.gene052814.t1 AT4G04960 31.532 111 75 1 13 122 525 635 4.17e-11 59.3
MS.gene052814.t1 AT1G12460 36.000 100 58 3 15 111 642 738 4.91e-11 59.3
MS.gene052814.t1 AT1G12460 36.000 100 58 3 15 111 781 877 5.19e-11 59.3
MS.gene052814.t1 AT1G16150 30.702 114 76 2 10 121 596 708 5.27e-11 59.3
MS.gene052814.t1 AT1G09970 33.628 113 66 4 3 112 850 956 5.55e-11 59.3
MS.gene052814.t1 AT1G31420 33.333 105 64 3 7 108 473 574 5.69e-11 58.9
MS.gene052814.t1 AT1G31420 33.333 105 64 3 7 108 474 575 5.69e-11 58.9
MS.gene052814.t1 AT1G31420 33.333 105 64 3 7 108 474 575 5.69e-11 58.9
MS.gene052814.t1 AT2G35620 33.962 106 62 3 7 108 471 572 6.90e-11 58.9
MS.gene052814.t1 AT2G35620 33.962 106 62 3 7 108 471 572 6.90e-11 58.9
MS.gene052814.t1 AT2G35620 33.962 106 62 3 7 108 471 572 6.90e-11 58.9
MS.gene052814.t1 AT2G35620 33.962 106 62 3 7 108 471 572 6.90e-11 58.9
MS.gene052814.t1 AT5G49660 32.727 110 68 3 7 113 833 939 8.65e-11 58.5
MS.gene052814.t1 AT1G09970 33.962 106 64 3 10 112 855 957 8.74e-11 58.5

Find 31 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCAACTTCAACCAATTC+TGG 0.231695 4.1:+81910068 None:intergenic
CAGCCTCGGTGTTATCCTTT+TGG 0.233572 4.1:-81910333 MS.gene052814:CDS
GACAAATGAAGTGTTTGATT+TGG 0.323614 4.1:-81910225 MS.gene052814:CDS
ATTCCATTTGTTGGTTCTCC+TGG 0.352717 4.1:+81910290 None:intergenic
AGGTTCAAACAAATGAATAA+AGG 0.359395 4.1:-81910028 None:intergenic
CACCTCAAGCAACATACTAT+TGG 0.362972 4.1:-81910391 MS.gene052814:CDS
GGCAAGTCCATTCCATTTGT+TGG 0.364949 4.1:+81910281 None:intergenic
AGAGGAGATTAAACCAGAAT+TGG 0.365145 4.1:-81910081 MS.gene052814:CDS
TGCAAAACTTGTTTAACTTC+AGG 0.401562 4.1:+81910110 None:intergenic
ACTATTGATGCAACATATTG+AGG 0.434119 4.1:+81910260 None:intergenic
CATCAATAGTTAAAGAAGAA+TGG 0.451806 4.1:-81910247 MS.gene052814:CDS
ATTAAGAAGTTCATCTCCTA+TGG 0.453320 4.1:+81910181 None:intergenic
TAAACGTCTGTCTTTGTGGT+AGG 0.462796 4.1:+81910356 None:intergenic
CCATTTGTTGGTTCTCCTGG+TGG 0.489997 4.1:+81910293 None:intergenic
GCTGTAAACGTCTGTCTTTG+TGG 0.502940 4.1:+81910352 None:intergenic
CCACCAGGAGAACCAACAAA+TGG 0.509152 4.1:-81910293 MS.gene052814:CDS
TTGATCCATCACCTTCTGCT+AGG 0.527661 4.1:-81910133 MS.gene052814:CDS
GATTTGGAACTCATGAGGGA+TGG 0.537502 4.1:-81910209 MS.gene052814:CDS
AGAAGTTCATCTCCTATGGT+TGG 0.555851 4.1:+81910185 None:intergenic
AAGACAGACGTTTACAGCCT+CGG 0.557756 4.1:-81910347 MS.gene052814:CDS
CTCTTAACTGGTAAACCACC+AGG 0.563734 4.1:-81910308 MS.gene052814:CDS
TACCAGTTAAGAGCTCCAAA+AGG 0.568751 4.1:+81910318 None:intergenic
AGGAGAACCAACAAATGGAA+TGG 0.572502 4.1:-81910288 MS.gene052814:CDS
TCAGGCCTAGCAGAAGGTGA+TGG 0.576145 4.1:+81910128 None:intergenic
TGTTTGATTTGGAACTCATG+AGG 0.576156 4.1:-81910214 MS.gene052814:CDS
TTAACTTCAGGCCTAGCAGA+AGG 0.577436 4.1:+81910122 None:intergenic
ATGAGGGATGGACCAACCAT+AGG 0.609052 4.1:-81910197 MS.gene052814:CDS
GTTTGATTTGGAACTCATGA+GGG 0.628775 4.1:-81910213 MS.gene052814:CDS
AGTTGATGATGATGCAGCAA+AGG 0.650249 4.1:-81910048 MS.gene052814:CDS
ATCCAATAGTATGTTGCTTG+AGG 0.659028 4.1:+81910389 None:intergenic
GCTCCAAAAGGATAACACCG+AGG 0.776474 4.1:+81910330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CATCAATAGTTAAAGAAGAA+TGG - chr4.1:81910185-81910204 MS.gene052814:CDS 25.0%
ACTATTGATGCAACATATTG+AGG + chr4.1:81910175-81910194 None:intergenic 30.0%
ATTAAGAAGTTCATCTCCTA+TGG + chr4.1:81910254-81910273 None:intergenic 30.0%
! GACAAATGAAGTGTTTGATT+TGG - chr4.1:81910207-81910226 MS.gene052814:CDS 30.0%
! TGCAAAACTTGTTTAACTTC+AGG + chr4.1:81910325-81910344 None:intergenic 30.0%
ACTTCAACTTCAACCAATTC+TGG + chr4.1:81910367-81910386 None:intergenic 35.0%
AGAGGAGATTAAACCAGAAT+TGG - chr4.1:81910351-81910370 MS.gene052814:CDS 35.0%
! ACAAGTTTTGCAGCAATTAG+AGG - chr4.1:81910333-81910352 MS.gene052814:CDS 35.0%
! ATCCAATAGTATGTTGCTTG+AGG + chr4.1:81910046-81910065 None:intergenic 35.0%
!! GTTTGATTTGGAACTCATGA+GGG - chr4.1:81910219-81910238 MS.gene052814:CDS 35.0%
!! TGTTTGATTTGGAACTCATG+AGG - chr4.1:81910218-81910237 MS.gene052814:CDS 35.0%
AGAAGTTCATCTCCTATGGT+TGG + chr4.1:81910250-81910269 None:intergenic 40.0%
AGGAGAACCAACAAATGGAA+TGG - chr4.1:81910144-81910163 MS.gene052814:CDS 40.0%
CACCTCAAGCAACATACTAT+TGG - chr4.1:81910041-81910060 MS.gene052814:CDS 40.0%
TAAACGTCTGTCTTTGTGGT+AGG + chr4.1:81910079-81910098 None:intergenic 40.0%
TACCAGTTAAGAGCTCCAAA+AGG + chr4.1:81910117-81910136 None:intergenic 40.0%
!! AGTTGATGATGATGCAGCAA+AGG - chr4.1:81910384-81910403 MS.gene052814:CDS 40.0%
!! ATTCCATTTGTTGGTTCTCC+TGG + chr4.1:81910145-81910164 None:intergenic 40.0%
!!! ATCCTTTTGGAGCTCTTAAC+TGG - chr4.1:81910112-81910131 MS.gene052814:CDS 40.0%
AAGACAGACGTTTACAGCCT+CGG - chr4.1:81910085-81910104 MS.gene052814:CDS 45.0%
CTCTTAACTGGTAAACCACC+AGG - chr4.1:81910124-81910143 MS.gene052814:CDS 45.0%
GCTGTAAACGTCTGTCTTTG+TGG + chr4.1:81910083-81910102 None:intergenic 45.0%
GGCAAGTCCATTCCATTTGT+TGG + chr4.1:81910154-81910173 None:intergenic 45.0%
TTAACTTCAGGCCTAGCAGA+AGG + chr4.1:81910313-81910332 None:intergenic 45.0%
TTGATCCATCACCTTCTGCT+AGG - chr4.1:81910299-81910318 MS.gene052814:CDS 45.0%
! GATTTGGAACTCATGAGGGA+TGG - chr4.1:81910223-81910242 MS.gene052814:CDS 45.0%
ATGAGGGATGGACCAACCAT+AGG - chr4.1:81910235-81910254 MS.gene052814:CDS 50.0%
CCACCAGGAGAACCAACAAA+TGG - chr4.1:81910139-81910158 MS.gene052814:CDS 50.0%
GCTCCAAAAGGATAACACCG+AGG + chr4.1:81910105-81910124 None:intergenic 50.0%
!! CCATTTGTTGGTTCTCCTGG+TGG + chr4.1:81910142-81910161 None:intergenic 50.0%
!!! CAGCCTCGGTGTTATCCTTT+TGG - chr4.1:81910099-81910118 MS.gene052814:CDS 50.0%
TCAGGCCTAGCAGAAGGTGA+TGG + chr4.1:81910307-81910326 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 81910031 81910423 81910031 ID=MS.gene052814
chr4.1 mRNA 81910031 81910423 81910031 ID=MS.gene052814.t1;Parent=MS.gene052814
chr4.1 exon 81910031 81910423 81910031 ID=MS.gene052814.t1.exon1;Parent=MS.gene052814.t1
chr4.1 CDS 81910031 81910423 81910031 ID=cds.MS.gene052814.t1;Parent=MS.gene052814.t1
Gene Sequence

>MS.gene052814

ATGGAAATCTCACCTCAAGCAACATACTATTGGATGACAAAGAAACCTACCACAAAGACAGACGTTTACAGCCTCGGTGTTATCCTTTTGGAGCTCTTAACTGGTAAACCACCAGGAGAACCAACAAATGGAATGGACTTGCCTCAATATGTTGCATCAATAGTTAAAGAAGAATGGACAAATGAAGTGTTTGATTTGGAACTCATGAGGGATGGACCAACCATAGGAGATGAACTTCTTAATACATTGAAATTAGCTTTGCATTGTGTTGATCCATCACCTTCTGCTAGGCCTGAAGTTAAACAAGTTTTGCAGCAATTAGAGGAGATTAAACCAGAATTGGTTGAAGTTGAAGTTGATGATGATGCAGCAAAGGTTCAAACAAATGAATAA
Protein sequence

>MS.gene052814.t1

MEISPQATYYWMTKKPTTKTDVYSLGVILLELLTGKPPGEPTNGMDLPQYVASIVKEEWTNEVFDLELMRDGPTIGDELLNTLKLALHCVDPSPSARPEVKQVLQQLEEIKPELVEVEVDDDAAKVQTNE