Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24987.t1 | XP_003604522.1 | 99.2 | 118 | 1 | 0 | 2 | 119 | 677 | 794 | 1.90E-58 | 235 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24987.t1 | Q9SCT4 | 78.5 | 107 | 22 | 1 | 3 | 109 | 712 | 817 | 2.1e-42 | 172.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24987.t1 | G7JKL3 | 99.2 | 118 | 1 | 0 | 2 | 119 | 677 | 794 | 1.3e-58 | 235.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052814 | MS.gene24987 | 0.892032 | 2.31E-74 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24987.t1 | MTR_4g014070 | 99.153 | 118 | 1 | 0 | 2 | 119 | 677 | 794 | 1.04e-76 | 241 |
MS.gene24987.t1 | MTR_4g014130 | 95.349 | 86 | 4 | 0 | 34 | 119 | 1 | 86 | 1.53e-55 | 167 |
MS.gene24987.t1 | MTR_5g083480 | 72.650 | 117 | 32 | 0 | 3 | 119 | 670 | 786 | 3.82e-53 | 177 |
MS.gene24987.t1 | MTR_5g083480 | 72.650 | 117 | 32 | 0 | 3 | 119 | 673 | 789 | 3.86e-53 | 177 |
MS.gene24987.t1 | MTR_6g470960 | 50.495 | 101 | 46 | 2 | 3 | 100 | 550 | 649 | 1.49e-25 | 100 |
MS.gene24987.t1 | MTR_3g093710 | 45.455 | 121 | 60 | 4 | 2 | 117 | 515 | 634 | 9.51e-25 | 97.8 |
MS.gene24987.t1 | MTR_7g073710 | 45.714 | 105 | 53 | 2 | 2 | 103 | 507 | 610 | 1.93e-24 | 97.1 |
MS.gene24987.t1 | MTR_8g107470 | 46.535 | 101 | 50 | 2 | 3 | 100 | 547 | 646 | 2.18e-24 | 96.7 |
MS.gene24987.t1 | MTR_3g090665 | 45.192 | 104 | 53 | 2 | 2 | 102 | 228 | 330 | 4.33e-24 | 94.4 |
MS.gene24987.t1 | MTR_1g110280 | 47.170 | 106 | 47 | 3 | 3 | 100 | 534 | 638 | 5.59e-24 | 95.5 |
MS.gene24987.t1 | MTR_5g075630 | 47.059 | 102 | 50 | 2 | 2 | 100 | 528 | 628 | 7.44e-24 | 95.5 |
MS.gene24987.t1 | MTR_5g068210 | 47.170 | 106 | 51 | 2 | 3 | 103 | 487 | 592 | 7.58e-24 | 95.1 |
MS.gene24987.t1 | MTR_8g099195 | 47.059 | 102 | 50 | 2 | 2 | 100 | 496 | 596 | 8.75e-24 | 95.1 |
MS.gene24987.t1 | MTR_3g062500 | 47.059 | 102 | 50 | 2 | 2 | 100 | 537 | 637 | 9.80e-24 | 95.1 |
MS.gene24987.t1 | MTR_4g113100 | 48.515 | 101 | 48 | 2 | 2 | 99 | 518 | 617 | 1.04e-23 | 94.7 |
MS.gene24987.t1 | MTR_3g062500 | 47.059 | 102 | 50 | 2 | 2 | 100 | 527 | 627 | 1.11e-23 | 94.7 |
MS.gene24987.t1 | MTR_5g009660 | 46.078 | 102 | 51 | 2 | 2 | 100 | 473 | 573 | 1.74e-23 | 94.4 |
MS.gene24987.t1 | MTR_5g078080 | 42.276 | 123 | 64 | 3 | 2 | 118 | 511 | 632 | 2.49e-23 | 94.0 |
MS.gene24987.t1 | MTR_2g023150 | 46.392 | 97 | 49 | 2 | 6 | 102 | 159 | 252 | 2.81e-22 | 88.2 |
MS.gene24987.t1 | MTR_5g055470 | 43.000 | 100 | 53 | 2 | 3 | 99 | 509 | 607 | 3.00e-22 | 90.9 |
MS.gene24987.t1 | MTR_3g090660 | 43.269 | 104 | 55 | 2 | 2 | 102 | 494 | 596 | 5.04e-21 | 87.4 |
MS.gene24987.t1 | MTR_1g028890 | 46.078 | 102 | 49 | 3 | 2 | 100 | 459 | 557 | 4.36e-20 | 84.7 |
MS.gene24987.t1 | MTR_7g059225 | 45.714 | 105 | 49 | 3 | 3 | 101 | 559 | 661 | 1.05e-19 | 83.6 |
MS.gene24987.t1 | MTR_1g061590 | 42.105 | 114 | 51 | 3 | 3 | 102 | 537 | 649 | 1.47e-19 | 83.2 |
MS.gene24987.t1 | MTR_6g069030 | 41.667 | 108 | 48 | 4 | 3 | 100 | 506 | 608 | 2.48e-19 | 82.4 |
MS.gene24987.t1 | MTR_3g078250 | 41.176 | 102 | 57 | 2 | 1 | 102 | 536 | 634 | 3.24e-19 | 82.0 |
MS.gene24987.t1 | MTR_7g103440 | 36.220 | 127 | 66 | 2 | 2 | 114 | 549 | 674 | 2.71e-18 | 79.3 |
MS.gene24987.t1 | MTR_2g008740 | 38.017 | 121 | 66 | 3 | 3 | 117 | 288 | 405 | 3.43e-18 | 79.0 |
MS.gene24987.t1 | MTR_1g009270 | 40.952 | 105 | 50 | 4 | 4 | 100 | 515 | 615 | 3.39e-17 | 76.3 |
MS.gene24987.t1 | MTR_5g094380 | 39.655 | 116 | 65 | 2 | 3 | 118 | 441 | 551 | 1.04e-15 | 72.0 |
MS.gene24987.t1 | MTR_7g059285 | 39.496 | 119 | 66 | 3 | 4 | 119 | 979 | 1094 | 2.93e-15 | 70.9 |
MS.gene24987.t1 | MTR_3g095100 | 43.299 | 97 | 52 | 2 | 6 | 100 | 1056 | 1151 | 6.78e-15 | 69.7 |
MS.gene24987.t1 | MTR_2g105900 | 39.048 | 105 | 58 | 2 | 6 | 105 | 520 | 623 | 9.44e-15 | 69.3 |
MS.gene24987.t1 | MTR_5g045910 | 40.385 | 104 | 56 | 2 | 4 | 105 | 970 | 1069 | 2.14e-14 | 68.6 |
MS.gene24987.t1 | MTR_8g046290 | 39.450 | 109 | 52 | 4 | 3 | 99 | 244 | 350 | 3.07e-14 | 67.8 |
MS.gene24987.t1 | MTR_3g090480 | 41.176 | 102 | 54 | 3 | 6 | 102 | 947 | 1047 | 5.18e-14 | 67.4 |
MS.gene24987.t1 | MTR_6g093050 | 37.624 | 101 | 56 | 2 | 6 | 100 | 518 | 617 | 5.45e-14 | 67.0 |
MS.gene24987.t1 | MTR_3g110840 | 35.772 | 123 | 65 | 4 | 2 | 119 | 838 | 951 | 1.48e-13 | 65.9 |
MS.gene24987.t1 | MTR_2g010470 | 36.893 | 103 | 59 | 3 | 2 | 101 | 868 | 967 | 2.16e-13 | 65.5 |
MS.gene24987.t1 | MTR_1g047670 | 41.176 | 102 | 54 | 4 | 2 | 98 | 988 | 1088 | 2.33e-13 | 65.5 |
MS.gene24987.t1 | MTR_1g096260 | 40.659 | 91 | 50 | 2 | 6 | 96 | 705 | 791 | 5.90e-13 | 64.3 |
MS.gene24987.t1 | MTR_2g070020 | 41.237 | 97 | 55 | 2 | 2 | 96 | 986 | 1082 | 1.01e-12 | 63.5 |
MS.gene24987.t1 | MTR_5g011410 | 36.000 | 100 | 58 | 2 | 4 | 100 | 790 | 886 | 1.07e-12 | 63.5 |
MS.gene24987.t1 | MTR_4g107620 | 38.384 | 99 | 53 | 3 | 4 | 98 | 492 | 586 | 1.15e-12 | 63.5 |
MS.gene24987.t1 | MTR_6g015190 | 35.849 | 106 | 61 | 2 | 1 | 101 | 1006 | 1109 | 1.46e-12 | 63.2 |
MS.gene24987.t1 | MTR_2g016400 | 36.082 | 97 | 57 | 1 | 6 | 102 | 116 | 207 | 1.59e-12 | 61.6 |
MS.gene24987.t1 | MTR_6g015265 | 34.906 | 106 | 62 | 2 | 1 | 101 | 1005 | 1108 | 1.79e-12 | 62.8 |
MS.gene24987.t1 | MTR_3g060880 | 35.354 | 99 | 61 | 2 | 6 | 101 | 958 | 1056 | 1.99e-12 | 62.8 |
MS.gene24987.t1 | MTR_7g091680 | 39.216 | 102 | 59 | 2 | 2 | 100 | 785 | 886 | 2.10e-12 | 62.8 |
MS.gene24987.t1 | MTR_4g014780 | 76.471 | 34 | 8 | 0 | 60 | 93 | 48 | 81 | 3.11e-12 | 58.2 |
MS.gene24987.t1 | MTR_8g087420 | 35.294 | 102 | 59 | 2 | 5 | 100 | 512 | 612 | 3.98e-12 | 62.0 |
MS.gene24987.t1 | MTR_2g072520 | 35.849 | 106 | 63 | 2 | 2 | 104 | 200 | 303 | 4.33e-12 | 61.2 |
MS.gene24987.t1 | MTR_4g088320 | 32.353 | 102 | 65 | 2 | 2 | 102 | 874 | 972 | 4.52e-12 | 61.6 |
MS.gene24987.t1 | MTR_2g090710 | 35.354 | 99 | 60 | 2 | 2 | 99 | 871 | 966 | 4.74e-12 | 61.6 |
MS.gene24987.t1 | MTR_5g096530 | 36.634 | 101 | 61 | 2 | 3 | 100 | 828 | 928 | 4.86e-12 | 61.6 |
MS.gene24987.t1 | MTR_1g097580 | 33.962 | 106 | 65 | 1 | 2 | 102 | 942 | 1047 | 6.56e-12 | 61.2 |
MS.gene24987.t1 | MTR_4g124990 | 31.313 | 99 | 64 | 1 | 6 | 100 | 528 | 626 | 9.34e-12 | 60.8 |
MS.gene24987.t1 | MTR_1g038890 | 31.579 | 95 | 65 | 0 | 2 | 96 | 1032 | 1126 | 1.03e-11 | 60.8 |
MS.gene24987.t1 | MTR_1g109580 | 37.374 | 99 | 58 | 3 | 4 | 99 | 607 | 704 | 1.17e-11 | 60.5 |
MS.gene24987.t1 | MTR_5g090100 | 35.965 | 114 | 58 | 6 | 2 | 106 | 860 | 967 | 1.20e-11 | 60.5 |
MS.gene24987.t1 | MTR_4g074080 | 35.577 | 104 | 61 | 3 | 3 | 102 | 542 | 643 | 3.29e-11 | 59.3 |
MS.gene24987.t1 | MTR_2g042710 | 31.683 | 101 | 65 | 1 | 2 | 98 | 527 | 627 | 3.74e-11 | 58.9 |
MS.gene24987.t1 | MTR_1g040200 | 38.542 | 96 | 54 | 2 | 6 | 98 | 244 | 337 | 3.76e-11 | 58.9 |
MS.gene24987.t1 | MTR_2g014560 | 32.353 | 102 | 65 | 2 | 2 | 102 | 868 | 966 | 3.93e-11 | 58.9 |
MS.gene24987.t1 | MTR_2g078810 | 33.333 | 102 | 63 | 2 | 2 | 100 | 950 | 1049 | 4.10e-11 | 58.9 |
MS.gene24987.t1 | MTR_2g078810 | 33.333 | 102 | 63 | 2 | 2 | 100 | 970 | 1069 | 4.23e-11 | 58.9 |
MS.gene24987.t1 | MTR_7g070200 | 36.893 | 103 | 57 | 3 | 4 | 99 | 620 | 721 | 5.93e-11 | 58.5 |
MS.gene24987.t1 | MTR_8g101260 | 34.343 | 99 | 59 | 3 | 6 | 99 | 519 | 616 | 6.62e-11 | 58.5 |
MS.gene24987.t1 | MTR_1g096270 | 37.895 | 95 | 55 | 2 | 2 | 96 | 827 | 917 | 6.80e-11 | 58.5 |
MS.gene24987.t1 | MTR_1g079520 | 38.384 | 99 | 57 | 2 | 2 | 96 | 945 | 1043 | 7.27e-11 | 58.2 |
MS.gene24987.t1 | MTR_1g069470 | 33.019 | 106 | 56 | 3 | 4 | 101 | 883 | 981 | 7.60e-11 | 58.2 |
MS.gene24987.t1 | MTR_1g039080 | 32.584 | 89 | 60 | 0 | 8 | 96 | 197 | 285 | 9.84e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24987.t1 | AT3G51740 | 80.808 | 99 | 19 | 0 | 3 | 101 | 712 | 810 | 1.09e-51 | 174 |
MS.gene24987.t1 | AT3G08680 | 46.602 | 103 | 52 | 1 | 2 | 101 | 514 | 616 | 3.26e-27 | 104 |
MS.gene24987.t1 | AT3G08680 | 46.602 | 103 | 52 | 1 | 2 | 101 | 514 | 616 | 3.26e-27 | 104 |
MS.gene24987.t1 | AT2G26730 | 43.802 | 121 | 60 | 3 | 2 | 119 | 520 | 635 | 2.95e-25 | 99.4 |
MS.gene24987.t1 | AT5G58300 | 42.276 | 123 | 64 | 3 | 2 | 118 | 530 | 651 | 1.17e-23 | 94.7 |
MS.gene24987.t1 | AT5G58300 | 42.276 | 123 | 64 | 3 | 2 | 118 | 530 | 651 | 1.17e-23 | 94.7 |
MS.gene24987.t1 | AT5G58300 | 42.276 | 123 | 64 | 3 | 2 | 118 | 530 | 651 | 1.17e-23 | 94.7 |
MS.gene24987.t1 | AT1G68400 | 45.631 | 103 | 50 | 2 | 3 | 100 | 536 | 637 | 2.13e-22 | 91.3 |
MS.gene24987.t1 | AT1G64210 | 42.453 | 106 | 54 | 2 | 2 | 100 | 477 | 582 | 3.03e-22 | 90.9 |
MS.gene24987.t1 | AT5G41680 | 44.554 | 101 | 52 | 2 | 2 | 99 | 228 | 327 | 5.32e-22 | 89.0 |
MS.gene24987.t1 | AT5G41680 | 44.554 | 101 | 52 | 2 | 2 | 99 | 254 | 353 | 8.04e-22 | 88.6 |
MS.gene24987.t1 | AT5G05160 | 42.056 | 107 | 51 | 4 | 2 | 100 | 514 | 617 | 3.00e-21 | 87.8 |
MS.gene24987.t1 | AT2G36570 | 40.769 | 130 | 58 | 3 | 3 | 114 | 532 | 660 | 4.76e-21 | 87.4 |
MS.gene24987.t1 | AT3G17840 | 40.777 | 103 | 56 | 2 | 3 | 100 | 537 | 639 | 1.66e-20 | 85.9 |
MS.gene24987.t1 | AT4G23740 | 40.367 | 109 | 61 | 2 | 2 | 107 | 509 | 616 | 2.82e-20 | 85.1 |
MS.gene24987.t1 | AT4G23740 | 40.367 | 109 | 61 | 2 | 2 | 107 | 509 | 616 | 2.82e-20 | 85.1 |
MS.gene24987.t1 | AT1G48480 | 39.216 | 102 | 59 | 1 | 3 | 101 | 543 | 644 | 3.75e-20 | 84.7 |
MS.gene24987.t1 | AT3G24660 | 45.192 | 104 | 52 | 3 | 3 | 101 | 551 | 654 | 2.45e-19 | 82.4 |
MS.gene24987.t1 | AT5G53320 | 39.604 | 101 | 55 | 2 | 2 | 102 | 478 | 572 | 2.37e-18 | 79.7 |
MS.gene24987.t1 | AT5G24100 | 38.000 | 100 | 60 | 2 | 2 | 100 | 514 | 612 | 6.27e-18 | 78.6 |
MS.gene24987.t1 | AT3G02880 | 37.000 | 100 | 60 | 1 | 3 | 99 | 516 | 615 | 1.49e-16 | 74.7 |
MS.gene24987.t1 | AT5G16590 | 37.000 | 100 | 60 | 1 | 3 | 99 | 514 | 613 | 3.49e-16 | 73.6 |
MS.gene24987.t1 | AT5G07620 | 41.176 | 102 | 55 | 3 | 3 | 99 | 255 | 356 | 6.03e-16 | 72.4 |
MS.gene24987.t1 | AT5G63930 | 39.831 | 118 | 69 | 2 | 2 | 117 | 982 | 1099 | 1.22e-15 | 72.0 |
MS.gene24987.t1 | AT5G63930 | 39.831 | 118 | 69 | 2 | 2 | 117 | 918 | 1035 | 1.23e-15 | 72.0 |
MS.gene24987.t1 | AT1G08590 | 38.835 | 103 | 60 | 2 | 2 | 101 | 903 | 1005 | 5.91e-15 | 70.1 |
MS.gene24987.t1 | AT1G17230 | 39.604 | 101 | 59 | 2 | 2 | 100 | 976 | 1076 | 6.18e-15 | 70.1 |
MS.gene24987.t1 | AT1G17230 | 39.604 | 101 | 59 | 2 | 2 | 100 | 976 | 1076 | 7.95e-15 | 69.7 |
MS.gene24987.t1 | AT3G13380 | 42.342 | 111 | 54 | 5 | 6 | 112 | 1040 | 1144 | 8.61e-15 | 69.7 |
MS.gene24987.t1 | AT3G19700 | 43.396 | 106 | 50 | 4 | 2 | 101 | 867 | 968 | 1.45e-14 | 68.9 |
MS.gene24987.t1 | AT4G39400 | 43.299 | 97 | 52 | 2 | 6 | 100 | 1064 | 1159 | 1.62e-14 | 68.9 |
MS.gene24987.t1 | AT3G02130 | 36.792 | 106 | 60 | 2 | 1 | 101 | 1045 | 1148 | 2.14e-14 | 68.6 |
MS.gene24987.t1 | AT3G02130 | 36.792 | 106 | 60 | 2 | 1 | 101 | 1028 | 1131 | 2.16e-14 | 68.6 |
MS.gene24987.t1 | AT1G55610 | 38.793 | 116 | 65 | 3 | 6 | 117 | 1042 | 1155 | 2.17e-14 | 68.6 |
MS.gene24987.t1 | AT1G55610 | 38.793 | 116 | 65 | 3 | 6 | 117 | 1042 | 1155 | 2.17e-14 | 68.6 |
MS.gene24987.t1 | AT1G34420 | 39.394 | 99 | 57 | 2 | 2 | 99 | 870 | 966 | 3.41e-14 | 67.8 |
MS.gene24987.t1 | AT5G61570 | 38.835 | 103 | 51 | 4 | 3 | 100 | 262 | 357 | 4.15e-14 | 67.4 |
MS.gene24987.t1 | AT5G61570 | 38.835 | 103 | 51 | 4 | 3 | 100 | 265 | 360 | 4.27e-14 | 67.4 |
MS.gene24987.t1 | AT3G24240 | 41.509 | 106 | 57 | 2 | 2 | 105 | 970 | 1072 | 4.39e-14 | 67.4 |
MS.gene24987.t1 | AT5G61480 | 40.816 | 98 | 55 | 2 | 8 | 102 | 906 | 1003 | 5.10e-14 | 67.4 |
MS.gene24987.t1 | AT1G34110 | 39.216 | 102 | 59 | 2 | 2 | 100 | 952 | 1053 | 1.67e-13 | 65.9 |
MS.gene24987.t1 | AT1G34110 | 39.216 | 102 | 59 | 2 | 2 | 100 | 952 | 1053 | 2.11e-13 | 65.5 |
MS.gene24987.t1 | AT1G69270 | 35.849 | 106 | 61 | 2 | 1 | 101 | 434 | 537 | 2.92e-13 | 65.1 |
MS.gene24987.t1 | AT1G78530 | 36.275 | 102 | 62 | 1 | 2 | 100 | 247 | 348 | 3.11e-13 | 64.7 |
MS.gene24987.t1 | AT4G31250 | 35.644 | 101 | 59 | 3 | 4 | 99 | 541 | 640 | 5.42e-13 | 64.3 |
MS.gene24987.t1 | AT5G16900 | 38.679 | 106 | 55 | 4 | 2 | 102 | 749 | 849 | 6.60e-13 | 64.3 |
MS.gene24987.t1 | AT5G16900 | 38.679 | 106 | 55 | 4 | 2 | 102 | 749 | 849 | 6.60e-13 | 64.3 |
MS.gene24987.t1 | AT5G16900 | 38.679 | 106 | 55 | 4 | 2 | 102 | 563 | 663 | 7.32e-13 | 63.9 |
MS.gene24987.t1 | AT5G48940 | 35.780 | 109 | 58 | 3 | 2 | 105 | 971 | 1072 | 9.43e-13 | 63.9 |
MS.gene24987.t1 | AT2G33170 | 38.000 | 100 | 59 | 3 | 2 | 98 | 1002 | 1101 | 1.70e-12 | 63.2 |
MS.gene24987.t1 | AT2G33170 | 38.000 | 100 | 59 | 3 | 2 | 98 | 1002 | 1101 | 1.70e-12 | 63.2 |
MS.gene24987.t1 | AT5G20690 | 31.068 | 103 | 66 | 2 | 2 | 100 | 557 | 658 | 2.06e-12 | 62.8 |
MS.gene24987.t1 | AT2G41820 | 36.275 | 102 | 62 | 2 | 2 | 100 | 786 | 887 | 3.61e-12 | 62.0 |
MS.gene24987.t1 | AT2G24230 | 33.333 | 102 | 62 | 2 | 5 | 102 | 751 | 850 | 4.29e-12 | 62.0 |
MS.gene24987.t1 | AT1G66830 | 37.374 | 99 | 54 | 4 | 4 | 99 | 588 | 681 | 5.68e-12 | 61.6 |
MS.gene24987.t1 | AT3G20190 | 38.655 | 119 | 61 | 4 | 6 | 118 | 360 | 472 | 6.49e-12 | 61.2 |
MS.gene24987.t1 | AT2G01950 | 35.455 | 110 | 56 | 2 | 6 | 100 | 1021 | 1130 | 7.03e-12 | 61.2 |
MS.gene24987.t1 | AT1G72180 | 35.294 | 102 | 60 | 3 | 4 | 101 | 864 | 963 | 8.88e-12 | 60.8 |
MS.gene24987.t1 | AT1G25320 | 34.951 | 103 | 60 | 3 | 2 | 99 | 599 | 699 | 1.03e-11 | 60.8 |
MS.gene24987.t1 | AT2G07040 | 34.513 | 113 | 62 | 4 | 6 | 111 | 515 | 622 | 1.55e-11 | 60.1 |
MS.gene24987.t1 | AT3G49670 | 35.772 | 123 | 67 | 4 | 2 | 115 | 867 | 986 | 1.61e-11 | 60.1 |
MS.gene24987.t1 | AT3G57830 | 36.275 | 102 | 61 | 3 | 4 | 102 | 562 | 662 | 1.66e-11 | 60.1 |
MS.gene24987.t1 | AT3G57830 | 36.275 | 102 | 61 | 3 | 4 | 102 | 562 | 662 | 1.66e-11 | 60.1 |
MS.gene24987.t1 | AT5G62710 | 35.354 | 99 | 56 | 3 | 4 | 98 | 490 | 584 | 1.78e-11 | 60.1 |
MS.gene24987.t1 | AT3G20190 | 38.655 | 119 | 61 | 4 | 6 | 118 | 549 | 661 | 1.84e-11 | 60.1 |
MS.gene24987.t1 | AT4G04960 | 31.532 | 111 | 75 | 1 | 2 | 111 | 525 | 635 | 2.53e-11 | 59.7 |
MS.gene24987.t1 | AT4G28650 | 37.037 | 108 | 54 | 4 | 2 | 101 | 880 | 981 | 2.69e-11 | 59.7 |
MS.gene24987.t1 | AT5G62710 | 35.354 | 99 | 56 | 3 | 4 | 98 | 456 | 550 | 2.90e-11 | 59.3 |
MS.gene24987.t1 | AT5G49770 | 35.000 | 120 | 64 | 4 | 1 | 113 | 808 | 920 | 2.92e-11 | 59.3 |
MS.gene24987.t1 | AT5G56040 | 38.776 | 98 | 57 | 2 | 6 | 100 | 944 | 1041 | 4.10e-11 | 58.9 |
MS.gene24987.t1 | AT1G12460 | 36.000 | 100 | 58 | 3 | 4 | 100 | 642 | 738 | 6.79e-11 | 58.5 |
MS.gene24987.t1 | AT4G01330 | 30.526 | 95 | 61 | 2 | 6 | 97 | 342 | 434 | 6.90e-11 | 58.2 |
MS.gene24987.t1 | AT1G12460 | 36.000 | 100 | 58 | 3 | 4 | 100 | 781 | 877 | 7.09e-11 | 58.5 |
Find 29 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTCAACTTCAACCAATTC+TGG | 0.231695 | 4.1:+82207316 | None:intergenic |
CAGCCTCGGTGTTATCCTTT+TGG | 0.233572 | 4.1:-82207581 | MS.gene24987:CDS |
GACAAATGAAGTGTTTGATT+TGG | 0.323614 | 4.1:-82207473 | MS.gene24987:CDS |
ATTCCATTTGTTGGTTCTCC+TGG | 0.352717 | 4.1:+82207538 | None:intergenic |
AGGTTCAAACAAATGAATAA+AGG | 0.359395 | 4.1:-82207276 | None:intergenic |
GGCAAGTCCATTCCATTTGT+TGG | 0.364949 | 4.1:+82207529 | None:intergenic |
AGAGGAGATTAAACCAGAAT+TGG | 0.365145 | 4.1:-82207329 | MS.gene24987:CDS |
TGCAAAACTTGTTTAACTTC+AGG | 0.401562 | 4.1:+82207358 | None:intergenic |
ACTATTGATGCAACATATTG+AGG | 0.434119 | 4.1:+82207508 | None:intergenic |
CATCAATAGTTAAAGAAGAA+TGG | 0.451806 | 4.1:-82207495 | MS.gene24987:CDS |
ATTAAGAAGTTCATCTCCTA+TGG | 0.453320 | 4.1:+82207429 | None:intergenic |
TAAACGTCTGTCTTTGTGGT+AGG | 0.462796 | 4.1:+82207604 | None:intergenic |
CCATTTGTTGGTTCTCCTGG+TGG | 0.489997 | 4.1:+82207541 | None:intergenic |
GCTGTAAACGTCTGTCTTTG+TGG | 0.502940 | 4.1:+82207600 | None:intergenic |
CCACCAGGAGAACCAACAAA+TGG | 0.509152 | 4.1:-82207541 | MS.gene24987:CDS |
TTGATCCATCACCTTCTGCT+AGG | 0.527661 | 4.1:-82207381 | MS.gene24987:CDS |
GATTTGGAACTCATGAGGGA+TGG | 0.537502 | 4.1:-82207457 | MS.gene24987:CDS |
AGAAGTTCATCTCCTATGGT+TGG | 0.555851 | 4.1:+82207433 | None:intergenic |
AAGACAGACGTTTACAGCCT+CGG | 0.557756 | 4.1:-82207595 | MS.gene24987:CDS |
CTCTTAACTGGTAAACCACC+AGG | 0.563734 | 4.1:-82207556 | MS.gene24987:CDS |
TACCAGTTAAGAGCTCCAAA+AGG | 0.568751 | 4.1:+82207566 | None:intergenic |
AGGAGAACCAACAAATGGAA+TGG | 0.572502 | 4.1:-82207536 | MS.gene24987:CDS |
TCAGGCCTAGCAGAAGGTGA+TGG | 0.576145 | 4.1:+82207376 | None:intergenic |
TGTTTGATTTGGAACTCATG+AGG | 0.576156 | 4.1:-82207462 | MS.gene24987:CDS |
TTAACTTCAGGCCTAGCAGA+AGG | 0.577436 | 4.1:+82207370 | None:intergenic |
ATGAGGGATGGACCAACCAT+AGG | 0.609052 | 4.1:-82207445 | MS.gene24987:CDS |
GTTTGATTTGGAACTCATGA+GGG | 0.628775 | 4.1:-82207461 | MS.gene24987:CDS |
AGTTGATGATGATGCAGCAA+AGG | 0.650249 | 4.1:-82207296 | MS.gene24987:CDS |
GCTCCAAAAGGATAACACCG+AGG | 0.776474 | 4.1:+82207578 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | CATCAATAGTTAAAGAAGAA+TGG | - | chr4.1:82207400-82207419 | MS.gene24987:CDS | 25.0% |
ACTATTGATGCAACATATTG+AGG | + | chr4.1:82207390-82207409 | None:intergenic | 30.0% | |
ATTAAGAAGTTCATCTCCTA+TGG | + | chr4.1:82207469-82207488 | None:intergenic | 30.0% | |
! | GACAAATGAAGTGTTTGATT+TGG | - | chr4.1:82207422-82207441 | MS.gene24987:CDS | 30.0% |
! | TGCAAAACTTGTTTAACTTC+AGG | + | chr4.1:82207540-82207559 | None:intergenic | 30.0% |
ACTTCAACTTCAACCAATTC+TGG | + | chr4.1:82207582-82207601 | None:intergenic | 35.0% | |
AGAGGAGATTAAACCAGAAT+TGG | - | chr4.1:82207566-82207585 | MS.gene24987:CDS | 35.0% | |
! | ACAAGTTTTGCAGCAATTAG+AGG | - | chr4.1:82207548-82207567 | MS.gene24987:CDS | 35.0% |
!! | GTTTGATTTGGAACTCATGA+GGG | - | chr4.1:82207434-82207453 | MS.gene24987:CDS | 35.0% |
!! | TGTTTGATTTGGAACTCATG+AGG | - | chr4.1:82207433-82207452 | MS.gene24987:CDS | 35.0% |
AGAAGTTCATCTCCTATGGT+TGG | + | chr4.1:82207465-82207484 | None:intergenic | 40.0% | |
AGGAGAACCAACAAATGGAA+TGG | - | chr4.1:82207359-82207378 | MS.gene24987:CDS | 40.0% | |
TAAACGTCTGTCTTTGTGGT+AGG | + | chr4.1:82207294-82207313 | None:intergenic | 40.0% | |
TACCAGTTAAGAGCTCCAAA+AGG | + | chr4.1:82207332-82207351 | None:intergenic | 40.0% | |
!! | AGTTGATGATGATGCAGCAA+AGG | - | chr4.1:82207599-82207618 | MS.gene24987:CDS | 40.0% |
!! | ATTCCATTTGTTGGTTCTCC+TGG | + | chr4.1:82207360-82207379 | None:intergenic | 40.0% |
!!! | ATCCTTTTGGAGCTCTTAAC+TGG | - | chr4.1:82207327-82207346 | MS.gene24987:CDS | 40.0% |
AAGACAGACGTTTACAGCCT+CGG | - | chr4.1:82207300-82207319 | MS.gene24987:CDS | 45.0% | |
CTCTTAACTGGTAAACCACC+AGG | - | chr4.1:82207339-82207358 | MS.gene24987:CDS | 45.0% | |
GCTGTAAACGTCTGTCTTTG+TGG | + | chr4.1:82207298-82207317 | None:intergenic | 45.0% | |
GGCAAGTCCATTCCATTTGT+TGG | + | chr4.1:82207369-82207388 | None:intergenic | 45.0% | |
TTAACTTCAGGCCTAGCAGA+AGG | + | chr4.1:82207528-82207547 | None:intergenic | 45.0% | |
TTGATCCATCACCTTCTGCT+AGG | - | chr4.1:82207514-82207533 | MS.gene24987:CDS | 45.0% | |
! | GATTTGGAACTCATGAGGGA+TGG | - | chr4.1:82207438-82207457 | MS.gene24987:CDS | 45.0% |
ATGAGGGATGGACCAACCAT+AGG | - | chr4.1:82207450-82207469 | MS.gene24987:CDS | 50.0% | |
CCACCAGGAGAACCAACAAA+TGG | - | chr4.1:82207354-82207373 | MS.gene24987:CDS | 50.0% | |
GCTCCAAAAGGATAACACCG+AGG | + | chr4.1:82207320-82207339 | None:intergenic | 50.0% | |
!! | CCATTTGTTGGTTCTCCTGG+TGG | + | chr4.1:82207357-82207376 | None:intergenic | 50.0% |
!!! | CAGCCTCGGTGTTATCCTTT+TGG | - | chr4.1:82207314-82207333 | MS.gene24987:CDS | 50.0% |
TCAGGCCTAGCAGAAGGTGA+TGG | + | chr4.1:82207522-82207541 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 82207279 | 82207638 | 82207279 | ID=MS.gene24987 |
chr4.1 | mRNA | 82207279 | 82207638 | 82207279 | ID=MS.gene24987.t1;Parent=MS.gene24987 |
chr4.1 | exon | 82207279 | 82207638 | 82207279 | ID=MS.gene24987.t1.exon1;Parent=MS.gene24987.t1 |
chr4.1 | CDS | 82207279 | 82207638 | 82207279 | ID=cds.MS.gene24987.t1;Parent=MS.gene24987.t1 |
Gene Sequence |
Protein sequence |