AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053409.t1 MTR_1g043350 95.722 187 7 1 1 186 32 218 4.67e-133 371
MS.gene053409.t1 MTR_1g074370 66.129 186 57 2 5 185 27 211 3.18e-71 214
MS.gene053409.t1 MTR_1g070000 49.721 179 73 3 7 180 50 216 3.49e-51 164
MS.gene053409.t1 MTR_1g070015 49.162 179 75 3 7 181 50 216 5.02e-50 161
MS.gene053409.t1 MTR_1g070020 50.838 179 75 5 5 176 26 198 8.92e-50 160
MS.gene053409.t1 MTR_1g069985 52.469 162 61 4 29 181 54 208 2.24e-48 157
MS.gene053409.t1 MTR_4g054740 56.164 146 51 3 44 176 90 235 3.62e-48 157
MS.gene053409.t1 MTR_4g054360 55.705 149 49 3 44 176 117 264 4.50e-48 157
MS.gene053409.t1 MTR_7g096830 55.901 161 52 4 32 176 79 236 4.07e-45 149
MS.gene053409.t1 MTR_1g070035 46.465 198 84 6 6 184 21 215 9.38e-45 147
MS.gene053409.t1 MTR_4g054860 54.667 150 51 4 44 176 124 273 2.76e-44 148
MS.gene053409.t1 MTR_1g069940 58.993 139 46 2 49 176 93 231 1.35e-42 142
MS.gene053409.t1 MTR_1g069945 56.081 148 52 3 49 184 99 245 3.26e-42 142
MS.gene053409.t1 MTR_7g096780 50.000 188 75 5 10 179 33 219 4.95e-42 141
MS.gene053409.t1 MTR_1g070045 53.147 143 58 4 5 145 23 158 4.35e-41 137
MS.gene053409.t1 MTR_2g015040 53.333 120 37 3 6 112 11 124 9.45e-36 122
MS.gene053409.t1 MTR_4g088005 51.923 104 49 1 6 108 11 114 1.64e-35 121
MS.gene053409.t1 MTR_2g015050 44.720 161 65 3 37 178 120 275 1.79e-33 120
MS.gene053409.t1 MTR_7g096750 80.000 60 12 0 51 110 20 79 3.11e-29 105
MS.gene053409.t1 MTR_1g048610 56.842 95 36 1 22 116 65 154 1.59e-28 106
MS.gene053409.t1 MTR_1g070070 66.234 77 19 1 41 110 4 80 2.05e-28 103
MS.gene053409.t1 MTR_7g096700 68.919 74 22 1 37 110 7 79 3.27e-28 103
MS.gene053409.t1 MTR_8g006840 44.275 131 43 2 6 108 54 182 7.35e-28 103
MS.gene053409.t1 MTR_4g100380 41.549 142 45 2 6 109 62 203 9.61e-28 105
MS.gene053409.t1 MTR_1g074310 63.014 73 27 0 38 110 8 80 1.10e-27 101
MS.gene053409.t1 MTR_1g074230 71.212 66 19 0 45 110 13 78 1.57e-27 101
MS.gene053409.t1 MTR_8g006815 77.586 58 13 0 51 108 96 153 4.62e-27 101
MS.gene053409.t1 MTR_7g081795 54.545 88 36 1 25 108 30 117 4.86e-27 102
MS.gene053409.t1 MTR_1g090290 58.242 91 32 2 25 110 83 172 1.13e-26 100
MS.gene053409.t1 MTR_7g081815 71.667 60 17 0 49 108 59 118 1.91e-25 97.8
MS.gene053409.t1 MTR_7g081805 71.667 60 17 0 49 108 59 118 3.96e-25 97.1
MS.gene053409.t1 MTR_4g100450 73.333 60 16 0 51 110 154 213 4.01e-25 99.4
MS.gene053409.t1 MTR_8g006825 55.952 84 26 1 49 121 94 177 5.69e-25 96.7
MS.gene053409.t1 MTR_4g100420 68.182 66 19 1 45 110 153 216 5.84e-25 98.6
MS.gene053409.t1 MTR_7g021010 63.014 73 24 2 41 113 4 73 4.87e-24 92.4
MS.gene053409.t1 MTR_1g074250 70.968 62 17 1 48 108 16 77 6.80e-24 91.7
MS.gene053409.t1 MTR_7g021010 61.644 73 25 2 41 113 43 112 1.46e-23 92.0
MS.gene053409.t1 MTR_4g086165 45.455 121 55 4 7 123 42 155 2.04e-23 92.4
MS.gene053409.t1 MTR_2g438180 60.870 69 27 0 42 110 5 73 4.81e-23 89.7
MS.gene053409.t1 MTR_8g022820 50.000 90 44 1 21 110 94 182 7.44e-23 94.4
MS.gene053409.t1 MTR_8g022820 50.000 90 44 1 21 110 94 182 7.44e-23 94.4
MS.gene053409.t1 MTR_4g086160 43.651 126 52 6 51 175 96 203 1.19e-22 91.3
MS.gene053409.t1 MTR_7g020980 60.274 73 26 2 41 113 43 112 1.44e-22 89.7
MS.gene053409.t1 MTR_2g105380 51.111 90 43 1 21 110 87 175 1.74e-22 92.8
MS.gene053409.t1 MTR_8g022820 52.326 86 40 1 25 110 97 181 1.91e-22 93.2
MS.gene053409.t1 MTR_4g086190 65.217 69 21 2 51 119 96 161 2.46e-22 90.1
MS.gene053409.t1 MTR_2g435590 52.439 82 38 1 27 108 72 152 7.66e-22 89.7
MS.gene053409.t1 MTR_1g069960 75.000 60 15 0 51 110 27 86 1.31e-21 86.3
MS.gene053409.t1 MTR_8g092460 61.972 71 25 2 43 113 137 205 2.79e-21 89.0
MS.gene053409.t1 MTR_1g087920 57.333 75 31 1 36 110 62 135 2.82e-21 89.0
MS.gene053409.t1 MTR_2g014300 52.439 82 35 2 35 116 2 79 4.64e-21 85.5
MS.gene053409.t1 MTR_7g096810 63.889 72 23 1 51 122 13 81 7.18e-21 84.0
MS.gene053409.t1 MTR_5g009620 52.500 80 37 1 33 112 94 172 1.40e-20 87.0
MS.gene053409.t1 MTR_4g086220 61.111 72 25 2 51 122 96 164 2.00e-20 85.5
MS.gene053409.t1 MTR_5g085070 51.899 79 37 1 31 109 31 108 2.10e-20 86.3
MS.gene053409.t1 MTR_1g040430 72.222 54 15 0 57 110 117 170 3.17e-20 84.0
MS.gene053409.t1 MTR_4g078710 51.190 84 34 2 31 108 2 84 3.21e-20 84.3
MS.gene053409.t1 MTR_3g090760 55.714 70 30 1 47 116 109 177 3.28e-20 86.7
MS.gene053409.t1 MTR_3g053690 63.934 61 21 1 51 111 27 86 5.95e-20 84.0
MS.gene053409.t1 MTR_5g085100 66.102 59 19 1 51 109 46 103 6.95e-20 84.7
MS.gene053409.t1 MTR_2g078680 66.102 59 19 1 51 109 31 88 7.73e-20 83.2
MS.gene053409.t1 MTR_8g069360 70.175 57 16 1 51 107 44 99 1.78e-19 85.1
MS.gene053409.t1 MTR_5g032820 48.515 101 44 3 14 107 2 101 2.37e-19 84.3
MS.gene053409.t1 MTR_0939s0010 58.904 73 24 2 51 118 65 136 2.82e-19 81.6
MS.gene053409.t1 MTR_5g075570 43.820 89 44 2 46 134 119 201 5.04e-19 82.4
MS.gene053409.t1 MTR_2g019750 37.500 128 72 4 51 176 50 171 5.37e-19 82.4
MS.gene053409.t1 MTR_3g102100 47.368 76 39 1 33 108 27 101 1.27e-18 79.3
MS.gene053409.t1 MTR_2g014340 60.000 65 23 2 51 113 19 82 2.05e-18 79.3
MS.gene053409.t1 MTR_8g102800 47.126 87 37 2 30 108 8 93 2.65e-18 79.7
MS.gene053409.t1 MTR_4g119270 50.575 87 41 2 21 107 24 108 3.23e-18 80.9
MS.gene053409.t1 MTR_3g074130 61.905 63 23 1 46 108 145 206 3.47e-18 80.9
MS.gene053409.t1 MTR_7g084370 70.690 58 14 2 51 107 42 97 3.75e-18 80.1
MS.gene053409.t1 MTR_2g089170 63.793 58 20 1 51 108 65 121 4.71e-18 78.2
MS.gene053409.t1 MTR_8g006410 47.222 72 37 1 37 108 38 108 5.48e-18 78.2
MS.gene053409.t1 MTR_1g028560 60.000 60 23 1 48 107 112 170 5.58e-18 80.5
MS.gene053409.t1 MTR_5g062700 61.905 63 23 1 46 108 168 229 6.37e-18 80.5
MS.gene053409.t1 MTR_2g090235 65.000 60 20 1 49 108 216 274 7.41e-18 80.5
MS.gene053409.t1 MTR_1g090170 60.000 60 23 1 49 108 150 208 8.55e-18 79.7
MS.gene053409.t1 MTR_4g035430 42.697 89 50 1 22 110 3 90 1.02e-17 77.8
MS.gene053409.t1 MTR_7g046260 49.315 73 36 1 36 108 46 117 1.08e-17 78.2
MS.gene053409.t1 MTR_1g090170 60.000 60 23 1 49 108 237 295 1.11e-17 80.1
MS.gene053409.t1 MTR_5g083340 55.556 72 27 2 51 118 85 155 1.13e-17 80.1
MS.gene053409.t1 MTR_2g101340 47.436 78 39 2 32 108 21 97 1.26e-17 77.4
MS.gene053409.t1 MTR_8g090350 58.730 63 25 1 46 108 108 169 1.90e-17 78.2
MS.gene053409.t1 MTR_5g008540 51.471 68 30 2 53 118 26 92 1.92e-17 73.9
MS.gene053409.t1 MTR_4g114570 41.739 115 57 4 49 159 5 113 2.77e-17 76.6
MS.gene053409.t1 MTR_3g110205 57.377 61 25 1 48 108 40 99 3.06e-17 75.9
MS.gene053409.t1 MTR_4g111915 51.389 72 34 1 37 108 39 109 3.92e-17 74.3
MS.gene053409.t1 MTR_8g099215 50.000 78 38 1 30 107 86 162 4.34e-17 77.4
MS.gene053409.t1 MTR_5g012910 52.857 70 31 2 40 108 16 84 6.48e-17 74.7
MS.gene053409.t1 MTR_2g043050 49.367 79 35 3 31 108 1 75 1.07e-16 75.1
MS.gene053409.t1 MTR_4g112490 51.389 72 34 1 37 108 39 109 1.88e-16 74.3
MS.gene053409.t1 MTR_6g088405 55.738 61 26 1 48 108 41 100 2.11e-16 74.3
MS.gene053409.t1 MTR_4g100650 53.030 66 30 1 43 108 66 130 3.20e-16 74.3
MS.gene053409.t1 MTR_1g014780 29.268 164 92 5 22 168 12 168 5.10e-16 73.6
MS.gene053409.t1 MTR_6g029180 45.122 82 44 1 26 107 8 88 5.73e-16 74.3
MS.gene053409.t1 MTR_2g043030 48.101 79 36 3 31 108 1 75 5.77e-16 72.8
MS.gene053409.t1 MTR_1g019110 53.333 60 27 1 49 108 42 100 6.87e-16 72.0
MS.gene053409.t1 MTR_7g011630 40.777 103 44 3 46 132 37 138 7.76e-16 74.7
MS.gene053409.t1 MTR_1g014800 40.449 89 50 2 21 108 1 87 1.01e-15 72.4
MS.gene053409.t1 MTR_8g027465 44.000 75 41 1 34 108 22 95 1.02e-15 71.6
MS.gene053409.t1 MTR_8g013860 52.459 61 28 1 48 108 44 103 1.13e-15 72.0
MS.gene053409.t1 MTR_7g117690 50.794 63 30 1 48 110 25 86 1.15e-15 71.2
MS.gene053409.t1 MTR_1g014820 43.333 90 42 4 21 108 1 83 2.63e-15 72.0
MS.gene053409.t1 MTR_2g016730 48.649 74 37 1 34 107 6 78 2.93e-15 72.8
MS.gene053409.t1 MTR_1g014860 46.479 71 35 2 39 108 10 78 3.48e-15 71.2
MS.gene053409.t1 MTR_8g085960 53.226 62 28 1 46 107 20 80 3.94e-15 71.2
MS.gene053409.t1 MTR_8g032610 44.706 85 45 2 25 109 2 84 4.38e-15 72.0
MS.gene053409.t1 MTR_5g083330 54.167 72 28 2 51 118 35 105 5.30e-15 71.6
MS.gene053409.t1 MTR_7g085810 50.746 67 32 1 41 107 20 85 6.63e-15 70.9
MS.gene053409.t1 MTR_4g010640 54.688 64 22 2 49 109 5 64 7.15e-15 70.1
MS.gene053409.t1 MTR_6g012970 56.667 60 25 1 48 107 35 93 1.11e-14 71.6
MS.gene053409.t1 MTR_2g103700 54.098 61 27 1 49 109 5 64 1.22e-14 68.6
MS.gene053409.t1 MTR_7g092190 55.172 58 25 1 51 108 30 86 1.36e-14 70.5
MS.gene053409.t1 MTR_1g006660 54.667 75 32 2 35 108 30 103 1.98e-14 69.7
MS.gene053409.t1 MTR_5g008470 51.613 62 27 2 53 112 77 137 2.25e-14 68.2
MS.gene053409.t1 MTR_1g101600 42.529 87 47 2 23 107 11 96 2.29e-14 68.6
MS.gene053409.t1 MTR_3g105510 50.746 67 30 2 42 107 28 92 2.34e-14 69.3
MS.gene053409.t1 MTR_5g082950 55.224 67 29 1 41 107 56 121 2.72e-14 70.1
MS.gene053409.t1 MTR_2g043020 45.570 79 38 3 31 108 1 75 3.08e-14 68.2
MS.gene053409.t1 MTR_2g043040 54.237 59 24 2 51 108 19 75 3.28e-14 68.6
MS.gene053409.t1 MTR_5g016750 36.000 100 58 2 47 146 21 114 3.49e-14 67.8
MS.gene053409.t1 MTR_8g023680 50.000 68 33 1 25 92 90 156 4.25e-14 69.7
MS.gene053409.t1 MTR_3g106290 51.515 66 25 2 46 108 3 64 5.45e-14 67.4
MS.gene053409.t1 MTR_6g088425 43.299 97 42 2 24 108 10 105 7.16e-14 67.8
MS.gene053409.t1 MTR_3g098580 50.000 92 36 3 49 132 74 163 7.53e-14 68.2
MS.gene053409.t1 MTR_1g074280 50.649 77 36 1 34 110 2 76 8.17e-14 65.1
MS.gene053409.t1 MTR_6g465510 41.573 89 49 2 21 107 1 88 2.02e-13 66.2
MS.gene053409.t1 MTR_6g465530 42.697 89 48 2 21 107 1 88 2.55e-13 65.5
MS.gene053409.t1 MTR_7g070220 53.968 63 23 2 51 107 78 140 3.10e-13 67.4
MS.gene053409.t1 MTR_4g009260 47.222 108 41 4 15 112 36 137 3.18e-13 65.5
MS.gene053409.t1 MTR_4g008860 55.172 58 25 1 51 108 8 64 3.67e-13 65.1
MS.gene053409.t1 MTR_6g466130 40.449 89 51 2 20 107 34 121 3.82e-13 65.9
MS.gene053409.t1 MTR_6g465430 43.678 87 45 2 24 107 24 109 5.61e-13 65.5
MS.gene053409.t1 MTR_4g082345 52.542 59 27 1 49 107 46 103 1.16e-12 65.5
MS.gene053409.t1 MTR_6g033255 61.111 72 25 2 37 108 8 76 1.37e-12 63.9
MS.gene053409.t1 MTR_6g465690 42.222 90 48 3 20 107 31 118 1.47e-12 64.3
MS.gene053409.t1 MTR_3g095190 66.667 60 19 1 49 108 168 226 1.48e-12 65.1
MS.gene053409.t1 MTR_6g466000 42.169 83 45 2 27 107 31 112 1.62e-12 63.9
MS.gene053409.t1 MTR_4g102670 49.206 63 30 2 46 108 10 70 2.04e-12 62.8
MS.gene053409.t1 MTR_7g028925 39.773 88 44 4 22 108 3 82 2.79e-12 60.5
MS.gene053409.t1 MTR_6g465420 42.529 87 46 2 24 107 24 109 2.79e-12 63.9
MS.gene053409.t1 MTR_1g074290 50.649 77 36 1 34 110 2 76 2.83e-12 62.0
MS.gene053409.t1 MTR_1g097190 56.000 50 21 1 51 100 23 71 4.73e-12 60.8
MS.gene053409.t1 MTR_6g465450 41.379 87 47 2 24 107 24 109 6.00e-12 62.8
MS.gene053409.t1 MTR_6g465460 48.438 64 32 1 44 107 47 109 6.19e-12 62.8
MS.gene053409.t1 MTR_5g085125 54.237 59 26 1 51 109 16 73 8.89e-12 60.8
MS.gene053409.t1 MTR_1g074270 45.570 79 28 3 31 108 1 65 1.95e-11 58.9
MS.gene053409.t1 MTR_2g085015 41.935 62 35 1 48 108 44 105 2.17e-11 60.8
MS.gene053409.t1 MTR_3g017420 50.980 51 24 1 58 108 2 51 2.42e-11 57.4
MS.gene053409.t1 MTR_5g008550 52.308 65 28 2 50 112 20 83 5.31e-11 59.3
MS.gene053409.t1 MTR_1g105400 42.647 68 38 1 25 92 89 155 5.85e-11 60.5
MS.gene053409.t1 MTR_1g110970 45.588 68 36 1 25 92 71 137 6.27e-11 60.5
MS.gene053409.t1 MTR_2g098180 31.818 132 71 4 51 167 171 298 7.17e-11 60.5
MS.gene053409.t1 MTR_6g465850 48.333 60 30 1 48 107 60 118 9.01e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053409.t1 AT3G23240 62.567 187 60 5 6 186 36 218 3.99e-76 227
MS.gene053409.t1 AT2G31230 51.064 188 59 3 21 179 59 242 3.42e-51 165
MS.gene053409.t1 AT1G06160 55.152 165 39 2 49 179 80 243 2.04e-41 140
MS.gene053409.t1 AT5G43410 79.365 63 13 0 48 110 12 74 3.37e-31 110
MS.gene053409.t1 AT5G47220 50.000 128 40 3 6 109 48 175 2.78e-30 111
MS.gene053409.t1 AT4G17500 44.118 136 44 2 6 109 71 206 2.46e-28 107
MS.gene053409.t1 AT5G51190 50.485 103 50 1 23 124 44 146 1.71e-27 103
MS.gene053409.t1 AT5G47230 58.537 82 34 0 29 110 134 215 2.39e-27 105
MS.gene053409.t1 AT2G44840 43.590 117 51 2 6 108 34 149 4.64e-27 102
MS.gene053409.t1 AT3G23230 66.667 66 22 0 45 110 14 79 1.46e-26 99.0
MS.gene053409.t1 AT4G18450 36.410 195 59 7 49 178 108 302 1.85e-26 102
MS.gene053409.t1 AT4G17490 68.657 67 19 1 44 110 132 196 2.24e-25 99.4
MS.gene053409.t1 AT2G33710 52.874 87 40 1 22 108 41 126 4.24e-25 97.4
MS.gene053409.t1 AT2G33710 52.874 87 40 1 22 108 41 126 5.49e-25 97.4
MS.gene053409.t1 AT5G61600 64.516 62 22 0 49 110 86 147 2.48e-24 95.9
MS.gene053409.t1 AT5G07580 55.696 79 35 0 35 113 94 172 3.75e-24 94.4
MS.gene053409.t1 AT4G11140 47.525 101 43 3 49 140 85 184 2.33e-23 94.4
MS.gene053409.t1 AT5G13330 51.648 91 40 3 23 113 13 99 2.57e-23 92.4
MS.gene053409.t1 AT1G04370 80.000 60 12 0 51 110 20 79 3.49e-23 90.1
MS.gene053409.t1 AT3G23220 71.212 66 19 0 45 110 8 73 4.14e-23 90.1
MS.gene053409.t1 AT3G20310 57.143 84 33 3 51 133 27 108 5.09e-23 92.4
MS.gene053409.t1 AT3G16770 56.098 82 33 2 27 108 57 135 6.92e-23 92.0
MS.gene053409.t1 AT2G47520 47.170 106 48 5 9 114 15 112 1.53e-22 89.4
MS.gene053409.t1 AT5G61890 58.667 75 29 2 39 113 78 150 1.65e-22 91.3
MS.gene053409.t1 AT1G72360 55.556 72 31 1 39 110 13 83 4.00e-21 86.7
MS.gene053409.t1 AT4G06746 36.719 128 69 3 36 163 21 136 9.05e-21 84.3
MS.gene053409.t1 AT1G72360 55.556 72 31 1 39 110 62 132 1.45e-20 86.3
MS.gene053409.t1 AT1G72360 55.556 72 31 1 39 110 64 134 1.45e-20 86.3
MS.gene053409.t1 AT5G61590 57.831 83 33 1 31 113 89 169 1.57e-20 84.7
MS.gene053409.t1 AT5G13910 58.108 74 30 1 34 107 3 75 1.63e-20 85.1
MS.gene053409.t1 AT1G03800 64.407 59 20 1 51 109 53 110 3.03e-20 85.1
MS.gene053409.t1 AT4G27950 53.425 73 33 1 46 118 113 184 4.22e-20 86.3
MS.gene053409.t1 AT1G28370 43.434 99 46 3 14 112 30 118 4.59e-20 83.6
MS.gene053409.t1 AT1G22190 56.579 76 32 1 33 108 65 139 5.63e-20 84.7
MS.gene053409.t1 AT1G50640 54.930 71 31 1 51 121 28 97 6.36e-20 84.0
MS.gene053409.t1 AT2G22200 60.000 70 25 2 39 108 61 127 8.18e-20 84.3
MS.gene053409.t1 AT4G28140 62.162 74 25 3 49 120 141 213 8.98e-20 84.7
MS.gene053409.t1 AT5G44210 47.727 88 45 1 31 118 13 99 1.13e-19 82.8
MS.gene053409.t1 AT3G61630 51.282 78 37 1 49 126 103 179 1.19e-19 84.7
MS.gene053409.t1 AT3G15210 56.000 75 30 2 37 109 9 82 1.81e-19 82.4
MS.gene053409.t1 AT1G28370 48.780 82 40 2 31 112 1 80 2.50e-19 80.9
MS.gene053409.t1 AT5G18560 45.918 98 47 2 37 134 41 132 2.76e-19 84.0
MS.gene053409.t1 AT1G36060 60.294 68 26 1 46 113 138 204 2.88e-19 83.6
MS.gene053409.t1 AT1G12890 56.579 76 30 2 33 107 3 76 3.63e-19 81.6
MS.gene053409.t1 AT1G28360 65.517 58 19 1 51 108 12 68 7.48e-19 80.1
MS.gene053409.t1 AT3G11020 60.938 64 24 1 45 108 72 134 8.37e-19 82.4
MS.gene053409.t1 AT1G78080 63.492 63 22 1 46 108 147 208 2.15e-18 81.6
MS.gene053409.t1 AT4G13620 63.333 60 21 1 49 108 230 288 2.70e-18 81.6
MS.gene053409.t1 AT5G11590 54.054 74 32 2 36 108 35 107 2.86e-18 79.7
MS.gene053409.t1 AT4G23750 48.780 82 37 2 28 109 103 179 2.98e-18 81.3
MS.gene053409.t1 AT4G23750 48.780 82 37 2 28 109 103 179 2.98e-18 81.3
MS.gene053409.t1 AT2G20880 63.333 60 21 1 49 108 185 243 3.96e-18 80.9
MS.gene053409.t1 AT5G25390 58.730 63 22 1 49 111 5 63 4.44e-18 78.2
MS.gene053409.t1 AT2G46310 44.231 104 42 4 51 139 99 201 4.49e-18 80.1
MS.gene053409.t1 AT4G31060 49.275 69 34 1 43 111 19 86 5.66e-18 77.8
MS.gene053409.t1 AT4G39780 60.656 61 23 1 48 108 90 149 7.37e-18 79.3
MS.gene053409.t1 AT1G75490 43.434 99 48 3 21 117 10 102 1.18e-17 77.4
MS.gene053409.t1 AT5G65130 60.317 63 24 1 46 108 106 167 1.23e-17 78.6
MS.gene053409.t1 AT1G22985 56.716 67 27 1 43 107 67 133 1.29e-17 76.3
MS.gene053409.t1 AT5G65130 60.317 63 24 1 46 108 108 169 1.34e-17 78.6
MS.gene053409.t1 AT5G53290 44.828 87 47 1 23 109 97 182 1.44e-17 79.3
MS.gene053409.t1 AT5G25810 40.164 122 58 4 23 139 7 118 1.62e-17 77.4
MS.gene053409.t1 AT1G28160 66.667 57 18 1 51 107 39 94 1.88e-17 77.8
MS.gene053409.t1 AT1G24590 66.667 57 18 1 51 107 58 113 4.09e-17 77.8
MS.gene053409.t1 AT1G12980 64.912 57 19 1 51 107 57 112 4.42e-17 77.8
MS.gene053409.t1 AT5G25390 57.576 66 21 2 49 111 5 66 4.76e-17 75.5
MS.gene053409.t1 AT2G44940 50.704 71 34 1 38 108 87 156 1.10e-16 76.3
MS.gene053409.t1 AT3G60490 41.489 94 45 2 38 131 58 141 1.36e-16 75.5
MS.gene053409.t1 AT3G50260 50.769 65 31 1 44 108 14 77 1.38e-16 73.6
MS.gene053409.t1 AT1G46768 44.186 86 43 2 27 108 3 87 1.68e-16 73.2
MS.gene053409.t1 AT1G46768 44.186 86 43 2 27 108 3 87 1.68e-16 73.2
MS.gene053409.t1 AT5G05410 61.017 59 22 1 50 108 78 135 1.80e-16 75.9
MS.gene053409.t1 AT3G16280 54.839 62 27 1 47 108 57 117 1.82e-16 74.7
MS.gene053409.t1 AT3G16280 54.839 62 27 1 47 108 75 135 1.95e-16 75.1
MS.gene053409.t1 AT4G16750 43.011 93 45 2 23 108 5 96 2.13e-16 73.6
MS.gene053409.t1 AT1G71450 46.154 78 41 1 31 108 4 80 2.24e-16 73.6
MS.gene053409.t1 AT1G46768 44.186 86 43 2 27 108 3 87 2.47e-16 72.4
MS.gene053409.t1 AT5G05410 61.017 59 22 1 50 108 78 135 2.59e-16 75.9
MS.gene053409.t1 AT5G19790 49.383 81 36 2 27 107 2 77 2.67e-16 74.7
MS.gene053409.t1 AT4G32800 49.333 75 34 2 34 108 5 75 2.78e-16 73.9
MS.gene053409.t1 AT4G36900 52.381 63 29 1 46 108 25 86 3.09e-16 73.6
MS.gene053409.t1 AT2G25820 58.621 58 23 1 51 108 26 82 7.36e-16 73.2
MS.gene053409.t1 AT2G23340 47.761 67 34 1 42 108 19 84 9.49e-16 71.6
MS.gene053409.t1 AT1G01250 42.718 103 41 3 25 110 2 103 9.93e-16 72.0
MS.gene053409.t1 AT2G35700 52.459 61 28 1 48 108 42 101 1.11e-15 72.0
MS.gene053409.t1 AT4G34410 69.492 59 17 1 50 108 135 192 2.33e-15 72.4
MS.gene053409.t1 AT5G67190 50.794 63 30 1 46 108 16 77 2.61e-15 70.9
MS.gene053409.t1 AT1G43160 54.878 82 36 1 49 130 59 139 3.69e-15 70.5
MS.gene053409.t1 AT5G64750 66.071 56 17 2 58 113 192 245 4.14e-15 72.8
MS.gene053409.t1 AT1G71130 53.731 67 25 2 46 107 74 139 4.96e-15 69.3
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 14 70 5.53e-15 71.6
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 14 70 5.53e-15 71.6
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 14 70 5.53e-15 71.6
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 72 128 7.57e-15 71.6
MS.gene053409.t1 AT3G57600 55.172 58 25 1 51 108 28 84 7.95e-15 70.9
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 79 135 8.66e-15 71.6
MS.gene053409.t1 AT2G40350 54.237 59 26 1 51 109 67 124 9.03e-15 68.6
MS.gene053409.t1 AT2G40340 58.621 58 23 1 51 108 72 128 9.08e-15 71.2
MS.gene053409.t1 AT2G40350 54.237 59 26 1 51 109 74 131 9.59e-15 68.9
MS.gene053409.t1 AT5G50080 56.627 83 30 2 26 108 57 133 1.18e-14 69.7
MS.gene053409.t1 AT3G14230 59.740 77 30 1 35 111 108 183 1.21e-14 71.2
MS.gene053409.t1 AT5G50080 56.627 83 30 2 26 108 66 142 1.27e-14 69.7
MS.gene053409.t1 AT3G14230 59.740 77 30 1 35 111 107 182 1.27e-14 71.2
MS.gene053409.t1 AT3G14230 59.740 77 30 1 35 111 112 187 1.40e-14 71.2
MS.gene053409.t1 AT5G07310 68.333 60 18 1 49 108 90 148 1.67e-14 70.1
MS.gene053409.t1 AT1G15360 53.125 64 23 2 49 109 5 64 1.92e-14 68.9
MS.gene053409.t1 AT1G15360 53.125 64 23 2 49 109 5 64 1.92e-14 68.9
MS.gene053409.t1 AT4G25480 45.000 80 41 2 30 107 28 106 2.46e-14 68.9
MS.gene053409.t1 AT5G21960 55.932 59 23 2 51 108 7 63 3.49e-14 68.6
MS.gene053409.t1 AT1G21910 45.588 68 36 1 51 118 50 116 4.13e-14 68.6
MS.gene053409.t1 AT5G18450 41.237 97 55 2 50 146 33 127 6.13e-14 68.9
MS.gene053409.t1 AT2G36450 49.315 73 34 3 37 108 2 72 9.15e-14 66.6
MS.gene053409.t1 AT4G25490 47.761 67 34 1 41 107 38 103 9.51e-14 67.0
MS.gene053409.t1 AT1G53910 60.811 74 26 2 40 113 116 186 1.15e-13 68.6
MS.gene053409.t1 AT1G53910 60.811 74 26 2 40 113 116 186 1.15e-13 68.6
MS.gene053409.t1 AT1G53910 60.811 74 26 2 40 113 114 184 1.16e-13 68.6
MS.gene053409.t1 AT4G25470 47.761 67 34 1 41 107 41 106 1.80e-13 66.6
MS.gene053409.t1 AT1G74930 50.847 59 26 2 51 108 21 77 3.50e-13 65.5
MS.gene053409.t1 AT1G12610 46.875 64 33 1 44 107 23 85 4.34e-13 65.5
MS.gene053409.t1 AT1G63030 48.438 64 32 1 44 107 23 85 7.39e-13 64.3
MS.gene053409.t1 AT1G63030 48.438 64 32 1 44 107 23 85 7.39e-13 64.3
MS.gene053409.t1 AT5G51990 46.269 67 35 1 41 107 44 109 8.45e-13 64.7
MS.gene053409.t1 AT5G25190 49.206 63 31 1 46 108 3 64 1.52e-12 63.2
MS.gene053409.t1 AT1G19210 49.153 59 27 2 51 108 12 68 2.69e-12 62.8
MS.gene053409.t1 AT1G53170 62.712 59 21 1 51 109 31 88 6.72e-12 61.6
MS.gene053409.t1 AT1G77200 46.479 71 37 1 38 108 30 99 1.25e-11 61.6
MS.gene053409.t1 AT1G22810 43.662 71 35 3 41 108 4 72 1.36e-11 60.1
MS.gene053409.t1 AT5G11190 45.000 100 45 3 49 142 5 100 3.45e-11 59.7
MS.gene053409.t1 AT5G65510 37.755 98 49 3 51 140 174 267 3.80e-11 60.8
MS.gene053409.t1 AT5G65510 37.755 98 49 3 51 140 232 325 4.42e-11 61.2
MS.gene053409.t1 AT5G65510 37.755 98 49 3 51 140 232 325 4.42e-11 61.2
MS.gene053409.t1 AT5G65510 37.755 98 49 3 51 140 174 267 4.54e-11 61.2

Find 0 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGATGTTAGGATAGATAATT+TGG - 6958:20744-20763 MS.gene053409:CDS 25.0%
!! ACTTAATTTTCCAGTTGAAA+AGG - 6958:20594-20613 MS.gene053409:CDS 25.0%
AAAAGGTTAAGGAATCACTT+AGG - 6958:20611-20630 MS.gene053409:CDS 30.0%
AAAGGTTAAGGAATCACTTA+GGG - 6958:20612-20631 MS.gene053409:CDS 30.0%
GCATTCTATGAAACGTAAAA+TGG - 6958:20696-20715 MS.gene053409:CDS 30.0%
TTTCTCTTCAAAGCAATAAC+AGG + 6958:20676-20695 MS.gene053409:intergenic 30.0%
! TTTTCCAGTTGAAAAGGTTA+AGG - 6958:20600-20619 MS.gene053409:CDS 30.0%
!! CATATAGAAGCATTTCTTCT+GGG + 6958:20321-20340 MS.gene053409:intergenic 30.0%
!!! TTCATTGCTAGTTTTGCTTA+GGG + 6958:20374-20393 MS.gene053409:intergenic 30.0%
!!! TTTCATTGCTAGTTTTGCTT+AGG + 6958:20375-20394 MS.gene053409:intergenic 30.0%
AAGAACCACAAATCTTATCG+AGG - 6958:20418-20437 MS.gene053409:CDS 35.0%
AGAAACATGACACAGATGTT+AGG - 6958:20731-20750 MS.gene053409:CDS 35.0%
ATAAGGGATTCAACAAGACA+TGG - 6958:20478-20497 MS.gene053409:CDS 35.0%
CCAGAAGAAATGCTTCTATA+TGG - 6958:20319-20338 MS.gene053409:CDS 35.0%
CTGATGACAATCAAAATCCT+TGG - 6958:20818-20837 MS.gene053409:CDS 35.0%
GAAATTTGCAGCAGAGATAA+GGG - 6958:20462-20481 MS.gene053409:CDS 35.0%
TTGGTTGTGTTTGAAGATCT+TGG - 6958:20763-20782 MS.gene053409:CDS 35.0%
! GATTCCTTAACCTTTTCAAC+TGG + 6958:20607-20626 MS.gene053409:intergenic 35.0%
!! AGATCTTGGTGCTGATTATT+TGG - 6958:20777-20796 MS.gene053409:CDS 35.0%
!! CCATATAGAAGCATTTCTTC+TGG + 6958:20322-20341 MS.gene053409:intergenic 35.0%
CAAGACATGGCATAAGAGTA+TGG - 6958:20491-20510 MS.gene053409:CDS 40.0%
GGAAATTTGCAGCAGAGATA+AGG - 6958:20461-20480 MS.gene053409:CDS 40.0%
TGAAAGGGAGAAACTCGTTA+TGG + 6958:20288-20307 MS.gene053409:intergenic 40.0%
! CATGGCATAAGAGTATGGTT+AGG - 6958:20496-20515 MS.gene053409:CDS 40.0%
! TTGCTTAGGGTTTGTTCTTG+TGG + 6958:20361-20380 MS.gene053409:intergenic 40.0%
!! CTGGGTCGTTTTCATTGAAA+GGG + 6958:20303-20322 MS.gene053409:intergenic 40.0%
!! TCTGGGTCGTTTTCATTGAA+AGG + 6958:20304-20323 MS.gene053409:intergenic 40.0%
!!! CAAGCTGCTTTTTCAATGAG+AGG - 6958:20559-20578 MS.gene053409:CDS 40.0%
GAACGCCTCGATAAGATTTG+TGG + 6958:20426-20445 MS.gene053409:intergenic 45.0%
TCTGCTGCAAATTTCCCCCA+CGG + 6958:20457-20476 MS.gene053409:intergenic 50.0%
AGGCGTTCGACGTAGACCGT+GGG - 6958:20438-20457 MS.gene053409:CDS 60.0%
GCGTTCGACGTAGACCGTGG+GGG - 6958:20440-20459 MS.gene053409:CDS 65.0%
GGCGTTCGACGTAGACCGTG+GGG - 6958:20439-20458 MS.gene053409:CDS 65.0%
! GAGGCGTTCGACGTAGACCG+TGG - 6958:20437-20456 MS.gene053409:CDS 65.0%


Chromosome Type Strat End Strand Name
6958 gene 20283 20843 20283 ID=MS.gene053409
6958 mRNA 20283 20843 20283 ID=MS.gene053409.t1;Parent=MS.gene053409
6958 exon 20283 20843 20283 ID=MS.gene053409.t1.exon1;Parent=MS.gene053409.t1
6958 CDS 20283 20843 20283 ID=cds.MS.gene053409.t1;Parent=MS.gene053409.t1
Gene Sequence

>MS.gene053409

AACCATAACGAGTTTCTCCCTTTCAATGAAAACGACCCAGAAGAAATGCTTCTATATGGCATGATAACTTCATCACCACAAGAACAAACCCTAAGCAAAACTAGCAATGAAAAAACAACAAAGAACAACAAAGATAAGAACCACAAATCTTATCGAGGCGTTCGACGTAGACCGTGGGGGAAATTTGCAGCAGAGATAAGGGATTCAACAAGACATGGCATAAGAGTATGGTTAGGAACATTTGATAGTGCTGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCAGCTGCAACACTTAATTTTCCAGTTGAAAAGGTTAAGGAATCACTTAGGGACATGAATTATGTGTTGTCTAATGATAATGAGTGTTCACCTGTTATTGCTTTGAAGAGAAAGCATTCTATGAAACGTAAAATGGATGAAAAGAAGAAGAAACATGACACAGATGTTAGGATAGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATGTCTTCTGATGACAATCAAAATCCTTGGTGA
Protein sequence

>MS.gene053409.t1

NHNEFLPFNENDPEEMLLYGMITSSPQEQTLSKTSNEKTTKNNKDKNHKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAATLNFPVEKVKESLRDMNYVLSNDNECSPVIALKRKHSMKRKMDEKKKKHDTDVRIDNLVVFEDLGADYLEQLLMSSDDNQNPW