AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062865

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062865.t1 MTR_1g043350 94.767 172 8 1 1 171 47 218 4.47e-102 292
MS.gene062865.t1 MTR_1g074370 64.571 175 56 2 1 170 38 211 1.34e-62 192
MS.gene062865.t1 MTR_1g070000 53.293 167 60 5 11 165 56 216 1.13e-49 160
MS.gene062865.t1 MTR_1g070020 54.194 155 64 2 12 161 46 198 1.62e-49 159
MS.gene062865.t1 MTR_1g069985 53.086 162 60 4 14 166 54 208 8.71e-49 157
MS.gene062865.t1 MTR_1g070015 52.976 168 69 3 7 166 51 216 1.43e-48 157
MS.gene062865.t1 MTR_4g054360 55.705 149 49 3 29 161 117 264 1.63e-48 158
MS.gene062865.t1 MTR_4g054740 56.164 146 51 3 29 161 90 235 1.81e-48 157
MS.gene062865.t1 MTR_1g070035 49.444 180 71 5 3 169 43 215 4.02e-45 148
MS.gene062865.t1 MTR_7g096830 59.060 149 42 4 29 161 91 236 4.38e-45 148
MS.gene062865.t1 MTR_4g054860 54.667 150 51 4 29 161 124 273 1.09e-44 149
MS.gene062865.t1 MTR_1g069940 58.993 139 46 2 34 161 93 231 7.09e-43 143
MS.gene062865.t1 MTR_1g069945 55.782 147 54 2 34 169 99 245 1.30e-42 142
MS.gene062865.t1 MTR_7g096780 52.047 171 65 4 10 164 50 219 1.51e-41 139
MS.gene062865.t1 MTR_1g070045 58.475 118 47 1 13 130 43 158 4.08e-41 136
MS.gene062865.t1 MTR_2g015050 44.720 161 65 3 22 163 120 275 1.60e-33 120
MS.gene062865.t1 MTR_2g015040 78.125 64 14 0 34 97 61 124 1.64e-32 114
MS.gene062865.t1 MTR_4g088005 51.064 94 45 1 1 93 21 114 3.69e-30 107
MS.gene062865.t1 MTR_7g096750 80.000 60 12 0 36 95 20 79 1.63e-29 105
MS.gene062865.t1 MTR_1g048610 57.895 95 35 1 7 101 65 154 3.01e-29 107
MS.gene062865.t1 MTR_1g070070 66.234 77 19 1 26 95 4 80 9.06e-29 103
MS.gene062865.t1 MTR_7g096700 68.919 74 22 1 22 95 7 79 1.70e-28 103
MS.gene062865.t1 MTR_1g074310 63.014 73 27 0 23 95 8 80 4.84e-28 102
MS.gene062865.t1 MTR_1g074230 71.212 66 19 0 30 95 13 78 6.67e-28 101
MS.gene062865.t1 MTR_7g081795 54.545 88 36 1 10 93 30 117 1.78e-27 102
MS.gene062865.t1 MTR_8g006815 77.586 58 13 0 36 93 96 153 2.47e-27 102
MS.gene062865.t1 MTR_4g100380 55.056 89 34 1 6 94 121 203 6.35e-27 102
MS.gene062865.t1 MTR_8g006840 75.862 58 14 0 36 93 125 182 1.60e-26 99.8
MS.gene062865.t1 MTR_1g090290 65.714 70 24 0 26 95 103 172 2.16e-26 99.4
MS.gene062865.t1 MTR_7g081815 71.667 60 17 0 34 93 59 118 1.07e-25 97.8
MS.gene062865.t1 MTR_7g081805 56.667 90 34 1 9 93 29 118 1.39e-25 97.8
MS.gene062865.t1 MTR_4g100450 73.333 60 16 0 36 95 154 213 2.30e-25 99.4
MS.gene062865.t1 MTR_8g006825 55.952 84 26 1 34 106 94 177 2.92e-25 97.1
MS.gene062865.t1 MTR_4g100420 68.182 66 19 1 30 95 153 216 2.92e-25 99.0
MS.gene062865.t1 MTR_7g021010 66.176 68 20 2 26 93 4 68 2.57e-24 92.4
MS.gene062865.t1 MTR_1g074250 70.968 62 17 1 33 93 16 77 2.90e-24 92.0
MS.gene062865.t1 MTR_7g021010 61.644 73 25 2 26 98 43 112 8.90e-24 92.0
MS.gene062865.t1 MTR_4g086165 51.000 100 40 3 11 108 63 155 1.62e-23 92.4
MS.gene062865.t1 MTR_2g438180 60.870 69 27 0 27 95 5 73 3.01e-23 89.7
MS.gene062865.t1 MTR_4g086160 43.651 126 52 6 36 160 96 203 3.61e-23 92.0
MS.gene062865.t1 MTR_8g022820 50.000 90 44 1 6 95 94 182 5.29e-23 94.0
MS.gene062865.t1 MTR_8g022820 50.000 90 44 1 6 95 94 182 5.29e-23 94.0
MS.gene062865.t1 MTR_7g020980 60.274 73 26 2 26 98 43 112 8.98e-23 89.7
MS.gene062865.t1 MTR_4g086190 65.217 69 21 2 36 104 96 161 1.19e-22 90.5
MS.gene062865.t1 MTR_8g022820 53.659 82 37 1 14 95 101 181 1.28e-22 92.8
MS.gene062865.t1 MTR_2g105380 51.111 90 43 1 6 95 87 175 1.48e-22 92.8
MS.gene062865.t1 MTR_1g069960 75.000 60 15 0 36 95 27 86 5.81e-22 86.7
MS.gene062865.t1 MTR_8g092460 61.972 71 25 2 28 98 137 205 1.36e-21 89.4
MS.gene062865.t1 MTR_1g087920 57.333 75 31 1 21 95 62 135 1.69e-21 89.0
MS.gene062865.t1 MTR_2g435590 52.439 82 38 1 12 93 72 152 1.97e-21 87.8
MS.gene062865.t1 MTR_7g096810 63.889 72 23 1 36 107 13 81 2.81e-21 84.3
MS.gene062865.t1 MTR_2g014300 52.439 82 35 2 20 101 2 79 3.09e-21 85.5
MS.gene062865.t1 MTR_5g085070 51.852 81 38 1 16 96 31 110 6.89e-21 87.0
MS.gene062865.t1 MTR_5g009620 62.500 64 23 1 34 97 110 172 9.94e-21 87.0
MS.gene062865.t1 MTR_4g086220 61.111 72 25 2 36 107 96 164 1.32e-20 85.5
MS.gene062865.t1 MTR_4g078710 55.556 72 31 1 22 93 14 84 1.36e-20 85.1
MS.gene062865.t1 MTR_3g090760 55.714 70 30 1 32 101 109 177 1.77e-20 87.0
MS.gene062865.t1 MTR_1g040430 72.222 54 15 0 42 95 117 170 1.87e-20 84.3
MS.gene062865.t1 MTR_5g085100 63.934 61 21 1 36 96 46 105 3.58e-20 85.1
MS.gene062865.t1 MTR_3g053690 63.934 61 21 1 36 96 27 86 3.66e-20 84.0
MS.gene062865.t1 MTR_2g078680 66.102 59 19 1 36 94 31 88 4.16e-20 83.6
MS.gene062865.t1 MTR_5g032820 49.474 95 42 2 3 92 8 101 1.14e-19 84.7
MS.gene062865.t1 MTR_8g069360 70.175 57 16 1 36 92 44 99 1.19e-19 85.1
MS.gene062865.t1 MTR_0939s0010 58.904 73 24 2 36 103 65 136 1.55e-19 81.6
MS.gene062865.t1 MTR_3g102100 48.684 76 38 1 18 93 27 101 2.29e-19 80.5
MS.gene062865.t1 MTR_2g019750 37.500 128 72 4 36 161 50 171 2.39e-19 83.2
MS.gene062865.t1 MTR_5g075570 43.820 89 44 2 31 119 119 201 2.67e-19 82.8
MS.gene062865.t1 MTR_2g014340 60.000 65 23 2 36 98 19 82 1.07e-18 79.7
MS.gene062865.t1 MTR_8g102800 51.389 72 34 1 22 93 23 93 2.10e-18 79.3
MS.gene062865.t1 MTR_4g119270 64.912 57 19 1 36 92 53 108 2.22e-18 80.9
MS.gene062865.t1 MTR_3g074130 61.905 63 23 1 31 93 145 206 2.40e-18 80.9
MS.gene062865.t1 MTR_7g084370 70.690 58 14 2 36 92 42 97 2.72e-18 80.1
MS.gene062865.t1 MTR_2g089170 63.793 58 20 1 36 93 65 121 3.61e-18 77.8
MS.gene062865.t1 MTR_8g006410 47.222 72 37 1 22 93 38 108 3.78e-18 78.2
MS.gene062865.t1 MTR_5g062700 61.905 63 23 1 31 93 168 229 4.59e-18 80.5
MS.gene062865.t1 MTR_2g090235 65.000 60 20 1 34 93 216 274 4.96e-18 80.5
MS.gene062865.t1 MTR_1g028560 60.000 60 23 1 33 92 112 170 5.02e-18 80.1
MS.gene062865.t1 MTR_1g090170 60.000 60 23 1 34 93 150 208 5.38e-18 79.7
MS.gene062865.t1 MTR_1g090170 60.000 60 23 1 34 93 237 295 6.56e-18 80.1
MS.gene062865.t1 MTR_4g035430 42.697 89 50 1 7 95 3 90 7.06e-18 77.8
MS.gene062865.t1 MTR_7g046260 50.704 71 34 1 23 93 48 117 8.33e-18 77.8
MS.gene062865.t1 MTR_5g083340 55.556 72 27 2 36 103 85 155 8.44e-18 79.7
MS.gene062865.t1 MTR_8g090350 58.730 63 25 1 31 93 108 169 1.21e-17 78.2
MS.gene062865.t1 MTR_5g008540 51.471 68 30 2 38 103 26 92 1.27e-17 73.9
MS.gene062865.t1 MTR_4g114570 41.739 115 57 4 34 144 5 113 1.66e-17 76.6
MS.gene062865.t1 MTR_3g110205 57.377 61 25 1 33 93 40 99 1.82e-17 75.9
MS.gene062865.t1 MTR_8g099215 59.322 59 23 1 34 92 105 162 2.92e-17 77.4
MS.gene062865.t1 MTR_2g101340 46.154 78 40 2 17 93 21 97 3.29e-17 75.9
MS.gene062865.t1 MTR_4g111915 51.389 72 34 1 22 93 39 109 4.03e-17 73.9
MS.gene062865.t1 MTR_2g043050 50.633 79 34 3 16 93 1 75 4.43e-17 75.5
MS.gene062865.t1 MTR_5g012910 52.857 70 31 2 25 93 16 84 4.97e-17 74.7
MS.gene062865.t1 MTR_4g112490 51.389 72 34 1 22 93 39 109 1.62e-16 73.9
MS.gene062865.t1 MTR_4g100650 53.030 66 30 1 28 93 66 130 1.97e-16 74.7
MS.gene062865.t1 MTR_6g088405 55.738 61 26 1 33 93 41 100 2.08e-16 73.9
MS.gene062865.t1 MTR_1g014780 30.120 166 92 5 8 153 7 168 2.59e-16 73.9
MS.gene062865.t1 MTR_2g043030 49.367 79 35 3 16 93 1 75 2.93e-16 73.2
MS.gene062865.t1 MTR_6g029180 45.122 82 44 1 11 92 8 88 3.46e-16 74.7
MS.gene062865.t1 MTR_1g019110 53.333 60 27 1 34 93 42 100 3.92e-16 72.4
MS.gene062865.t1 MTR_7g011630 40.777 103 44 3 31 117 37 138 6.57e-16 74.7
MS.gene062865.t1 MTR_1g014820 44.444 90 41 4 6 93 1 83 7.22e-16 73.2
MS.gene062865.t1 MTR_7g117690 50.794 63 30 1 33 95 25 86 7.69e-16 71.2
MS.gene062865.t1 MTR_8g013860 52.459 61 28 1 33 93 44 103 7.70e-16 72.0
MS.gene062865.t1 MTR_8g027465 46.154 78 35 2 24 95 21 97 1.31e-15 70.9
MS.gene062865.t1 MTR_8g032610 46.988 83 42 2 10 92 2 82 1.55e-15 72.8
MS.gene062865.t1 MTR_1g014860 46.479 71 35 2 24 93 10 78 2.36e-15 71.2
MS.gene062865.t1 MTR_1g014800 39.326 89 51 2 6 93 1 87 2.56e-15 70.9
MS.gene062865.t1 MTR_8g085960 53.226 62 28 1 31 92 20 80 3.08e-15 71.2
MS.gene062865.t1 MTR_7g085810 50.746 67 32 1 26 92 20 85 3.78e-15 71.2
MS.gene062865.t1 MTR_4g010640 54.688 64 22 2 34 94 5 64 3.92e-15 70.5
MS.gene062865.t1 MTR_5g083330 54.167 72 28 2 36 103 35 105 4.41e-15 71.6
MS.gene062865.t1 MTR_2g103700 53.125 64 23 2 34 94 5 64 6.46e-15 68.9
MS.gene062865.t1 MTR_2g016730 54.839 62 27 1 31 92 18 78 6.51e-15 71.2
MS.gene062865.t1 MTR_1g006660 51.724 87 37 3 8 93 21 103 9.33e-15 70.1
MS.gene062865.t1 MTR_6g012970 57.627 59 24 1 34 92 36 93 9.35e-15 71.2
MS.gene062865.t1 MTR_7g092190 55.172 58 25 1 36 93 30 86 1.13e-14 70.1
MS.gene062865.t1 MTR_5g008470 51.613 62 27 2 38 97 77 137 1.60e-14 68.2
MS.gene062865.t1 MTR_2g043020 46.835 79 37 3 16 93 1 75 1.77e-14 68.6
MS.gene062865.t1 MTR_3g105510 50.746 67 30 2 27 92 28 92 1.79e-14 68.9
MS.gene062865.t1 MTR_1g074280 51.948 77 35 1 19 95 2 76 2.02e-14 66.2
MS.gene062865.t1 MTR_2g043040 46.835 79 37 3 16 93 1 75 2.16e-14 68.6
MS.gene062865.t1 MTR_5g016750 48.387 62 31 1 32 93 21 81 2.64e-14 67.4
MS.gene062865.t1 MTR_6g088425 44.330 97 41 2 9 93 10 105 3.13e-14 68.2
MS.gene062865.t1 MTR_5g082950 55.224 67 29 1 26 92 56 121 3.29e-14 69.3
MS.gene062865.t1 MTR_3g106290 51.515 66 25 2 31 93 3 64 3.39e-14 67.4
MS.gene062865.t1 MTR_3g098580 50.000 92 36 3 34 117 74 163 3.88e-14 68.6
MS.gene062865.t1 MTR_6g465510 42.697 89 48 2 6 92 1 88 5.02e-14 67.4
MS.gene062865.t1 MTR_8g023680 50.000 66 32 1 12 77 92 156 6.91e-14 68.6
MS.gene062865.t1 MTR_1g101600 41.379 87 48 2 8 92 11 96 7.14e-14 66.6
MS.gene062865.t1 MTR_6g465530 43.820 89 47 2 6 92 1 88 8.77e-14 66.6
MS.gene062865.t1 MTR_6g465430 44.828 87 44 2 9 92 24 109 1.24e-13 67.0
MS.gene062865.t1 MTR_4g008860 55.172 58 25 1 36 93 8 64 2.30e-13 65.5
MS.gene062865.t1 MTR_7g070220 53.125 64 24 2 35 92 77 140 2.43e-13 67.4
MS.gene062865.t1 MTR_4g009260 52.174 92 37 3 7 97 52 137 4.06e-13 64.7
MS.gene062865.t1 MTR_1g074290 51.948 77 35 1 19 95 2 76 7.29e-13 63.2
MS.gene062865.t1 MTR_6g465420 43.678 87 45 2 9 92 24 109 7.44e-13 65.1
MS.gene062865.t1 MTR_6g466130 39.326 89 52 2 5 92 34 121 8.22e-13 64.3
MS.gene062865.t1 MTR_4g082345 52.542 59 27 1 34 92 46 103 8.82e-13 65.1
MS.gene062865.t1 MTR_3g095190 66.667 60 19 1 34 93 168 226 9.08e-13 65.5
MS.gene062865.t1 MTR_6g033255 61.111 72 25 2 22 93 8 76 1.03e-12 63.9
MS.gene062865.t1 MTR_4g102670 49.206 63 30 2 31 93 10 70 1.30e-12 62.8
MS.gene062865.t1 MTR_6g465450 41.379 87 47 2 9 92 24 109 2.17e-12 63.5
MS.gene062865.t1 MTR_6g466000 46.269 67 35 1 26 92 47 112 2.36e-12 63.2
MS.gene062865.t1 MTR_6g465690 46.269 67 35 1 26 92 53 118 2.45e-12 63.5
MS.gene062865.t1 MTR_1g097190 56.000 50 21 1 36 85 23 71 3.27e-12 61.2
MS.gene062865.t1 MTR_7g028925 45.070 71 33 3 24 93 17 82 3.39e-12 59.7
MS.gene062865.t1 MTR_6g465460 48.438 64 32 1 29 92 47 109 4.38e-12 62.8
MS.gene062865.t1 MTR_5g085125 54.237 59 26 1 36 94 16 73 5.37e-12 61.2
MS.gene062865.t1 MTR_1g074270 45.570 79 28 3 16 93 1 65 1.15e-11 58.9
MS.gene062865.t1 MTR_2g085015 41.935 62 35 1 33 93 44 105 1.34e-11 61.2
MS.gene062865.t1 MTR_3g017420 50.980 51 24 1 43 93 2 51 1.35e-11 57.8
MS.gene062865.t1 MTR_6g466020 40.000 85 48 2 10 92 15 98 2.66e-11 59.3
MS.gene062865.t1 MTR_5g008550 52.308 65 28 2 35 97 20 83 3.26e-11 59.3
MS.gene062865.t1 MTR_6g465850 48.333 60 30 1 33 92 60 118 6.15e-11 59.7
MS.gene062865.t1 MTR_2g098180 36.735 98 50 3 36 125 171 264 8.20e-11 60.1
MS.gene062865.t1 MTR_3g105480 51.786 56 24 2 38 92 33 86 8.64e-11 58.9
MS.gene062865.t1 MTR_1g105400 42.647 68 38 1 10 77 89 155 9.64e-11 59.7
MS.gene062865.t1 MTR_1g012470 41.880 117 54 5 36 144 7 117 9.68e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062865.t1 AT3G23240 61.017 177 59 5 1 171 46 218 8.95e-69 208
MS.gene062865.t1 AT2G31230 51.596 188 58 3 6 164 59 242 6.40e-52 166
MS.gene062865.t1 AT1G06160 55.152 165 39 2 34 164 80 243 8.82e-42 140
MS.gene062865.t1 AT5G43410 79.365 63 13 0 33 95 12 74 1.52e-31 110
MS.gene062865.t1 AT5G47230 58.537 82 34 0 14 95 134 215 8.90e-28 105
MS.gene062865.t1 AT5G51190 53.000 100 43 3 11 109 50 146 9.70e-28 103
MS.gene062865.t1 AT5G47220 75.410 61 15 0 34 94 115 175 2.64e-27 103
MS.gene062865.t1 AT4G17500 75.410 61 15 0 34 94 146 206 4.04e-27 103
MS.gene062865.t1 AT3G23230 66.667 66 22 0 30 95 14 79 4.71e-27 99.8
MS.gene062865.t1 AT4G18450 36.410 195 59 7 34 163 108 302 9.66e-27 102
MS.gene062865.t1 AT2G44840 53.488 86 39 1 8 93 65 149 3.64e-26 99.8
MS.gene062865.t1 AT4G17490 68.657 67 19 1 29 95 132 196 1.13e-25 99.8
MS.gene062865.t1 AT2G33710 52.874 87 40 1 7 93 41 126 2.08e-25 97.4
MS.gene062865.t1 AT2G33710 52.874 87 40 1 7 93 41 126 2.93e-25 97.4
MS.gene062865.t1 AT5G61600 64.516 62 22 0 34 95 86 147 1.63e-24 95.9
MS.gene062865.t1 AT5G07580 55.696 79 35 0 20 98 94 172 2.55e-24 94.4
MS.gene062865.t1 AT5G13330 52.747 91 39 3 8 98 13 99 3.83e-24 94.0
MS.gene062865.t1 AT4G11140 47.525 101 43 3 34 125 85 184 1.18e-23 94.4
MS.gene062865.t1 AT3G23220 71.212 66 19 0 30 95 8 73 1.77e-23 90.5
MS.gene062865.t1 AT1G04370 80.000 60 12 0 36 95 20 79 1.80e-23 90.1
MS.gene062865.t1 AT3G20310 57.143 84 33 3 36 118 27 108 2.42e-23 92.8
MS.gene062865.t1 AT3G16770 56.098 82 33 2 12 93 57 135 4.16e-23 92.4
MS.gene062865.t1 AT5G61890 58.667 75 29 2 24 98 78 150 1.17e-22 90.9
MS.gene062865.t1 AT2G47520 47.368 95 45 2 5 99 23 112 2.68e-22 88.2
MS.gene062865.t1 AT1G72360 55.556 72 31 1 24 95 13 83 3.61e-21 86.3
MS.gene062865.t1 AT4G06746 36.719 128 69 3 21 148 21 136 6.82e-21 84.0
MS.gene062865.t1 AT1G72360 55.556 72 31 1 24 95 62 132 1.25e-20 85.9
MS.gene062865.t1 AT1G72360 55.556 72 31 1 24 95 64 134 1.30e-20 85.9
MS.gene062865.t1 AT5G61590 56.818 88 33 2 11 98 87 169 1.31e-20 84.7
MS.gene062865.t1 AT4G27950 53.425 73 33 1 31 103 113 184 1.77e-20 86.7
MS.gene062865.t1 AT1G03800 64.407 59 20 1 36 94 53 110 1.94e-20 85.1
MS.gene062865.t1 AT1G50640 54.930 71 31 1 36 106 28 97 3.31e-20 84.0
MS.gene062865.t1 AT5G44210 47.727 88 45 1 16 103 13 99 3.94e-20 83.2
MS.gene062865.t1 AT5G13910 56.757 74 31 1 19 92 3 75 4.81e-20 83.6
MS.gene062865.t1 AT1G28370 43.750 96 45 2 2 97 32 118 5.06e-20 83.2
MS.gene062865.t1 AT4G28140 62.162 74 25 3 34 105 141 213 5.46e-20 84.7
MS.gene062865.t1 AT1G22190 59.155 71 28 1 23 93 70 139 5.69e-20 84.3
MS.gene062865.t1 AT2G22200 60.000 70 25 2 24 93 61 127 5.75e-20 84.3
MS.gene062865.t1 AT3G61630 51.282 78 37 1 34 111 103 179 8.00e-20 84.7
MS.gene062865.t1 AT3G15210 56.000 75 30 2 22 94 9 82 8.23e-20 83.2
MS.gene062865.t1 AT1G12890 57.333 75 31 1 18 92 3 76 1.21e-19 82.4
MS.gene062865.t1 AT1G36060 64.062 64 22 1 31 94 138 200 2.24e-19 83.6
MS.gene062865.t1 AT5G18560 45.918 98 47 2 22 119 41 132 2.57e-19 83.6
MS.gene062865.t1 AT1G28370 46.591 88 38 2 10 97 2 80 2.65e-19 80.5
MS.gene062865.t1 AT1G28360 65.517 58 19 1 36 93 12 68 4.61e-19 80.5
MS.gene062865.t1 AT3G11020 60.938 64 24 1 30 93 72 134 5.89e-19 82.4
MS.gene062865.t1 AT1G78080 63.492 63 22 1 31 93 147 208 1.37e-18 81.6
MS.gene062865.t1 AT4G13620 63.333 60 21 1 34 93 230 288 1.88e-18 81.6
MS.gene062865.t1 AT2G20880 63.333 60 21 1 34 93 185 243 2.13e-18 80.9
MS.gene062865.t1 AT5G11590 54.054 74 32 2 21 93 35 107 2.51e-18 79.3
MS.gene062865.t1 AT5G25390 42.478 113 55 3 34 145 5 108 2.94e-18 78.2
MS.gene062865.t1 AT2G46310 44.231 104 42 4 36 124 99 201 3.07e-18 80.1
MS.gene062865.t1 AT4G23750 48.780 82 37 2 13 94 103 179 3.09e-18 80.5
MS.gene062865.t1 AT4G23750 48.780 82 37 2 13 94 103 179 3.09e-18 80.5
MS.gene062865.t1 AT4G31060 42.857 91 47 2 6 96 1 86 4.16e-18 77.8
MS.gene062865.t1 AT1G75490 44.444 99 47 3 6 102 10 102 5.26e-18 77.8
MS.gene062865.t1 AT5G53290 45.977 87 46 1 8 94 97 182 5.70e-18 80.1
MS.gene062865.t1 AT4G39780 60.656 61 23 1 33 93 90 149 6.26e-18 79.0
MS.gene062865.t1 AT1G22985 56.716 67 27 1 28 92 67 133 6.37e-18 76.6
MS.gene062865.t1 AT5G65130 60.317 63 24 1 31 93 106 167 7.79e-18 78.6
MS.gene062865.t1 AT5G65130 60.317 63 24 1 31 93 108 169 8.24e-18 78.6
MS.gene062865.t1 AT5G25810 40.164 122 58 4 8 124 7 118 1.06e-17 77.4
MS.gene062865.t1 AT1G28160 66.667 57 18 1 36 92 39 94 1.24e-17 77.8
MS.gene062865.t1 AT1G12980 51.163 86 40 2 8 92 28 112 2.79e-17 77.8
MS.gene062865.t1 AT5G25390 57.576 66 21 2 34 96 5 66 2.95e-17 75.5
MS.gene062865.t1 AT1G24590 66.667 57 18 1 36 92 58 113 3.11e-17 77.4
MS.gene062865.t1 AT1G71450 47.436 78 40 1 16 93 4 80 5.20e-17 74.7
MS.gene062865.t1 AT3G50260 50.769 65 31 1 29 93 14 77 6.82e-17 73.6
MS.gene062865.t1 AT4G32800 50.667 75 33 2 19 93 5 75 9.28e-17 75.1
MS.gene062865.t1 AT2G44940 50.704 71 34 1 23 93 87 156 9.70e-17 75.9
MS.gene062865.t1 AT3G60490 41.489 94 45 2 23 116 58 141 1.07e-16 75.5
MS.gene062865.t1 AT5G05410 61.017 59 22 1 35 93 78 135 1.09e-16 75.9
MS.gene062865.t1 AT1G46768 44.186 86 43 2 12 93 3 87 1.22e-16 73.2
MS.gene062865.t1 AT1G46768 44.186 86 43 2 12 93 3 87 1.22e-16 73.2
MS.gene062865.t1 AT5G19790 49.383 81 36 2 12 92 2 77 1.44e-16 75.1
MS.gene062865.t1 AT1G46768 44.186 86 43 2 12 93 3 87 1.58e-16 72.4
MS.gene062865.t1 AT5G05410 61.017 59 22 1 35 93 78 135 1.60e-16 75.9
MS.gene062865.t1 AT4G36900 52.381 63 29 1 31 93 25 86 1.78e-16 73.6
MS.gene062865.t1 AT4G16750 43.011 93 45 2 8 93 5 96 1.83e-16 73.2
MS.gene062865.t1 AT3G16280 54.839 62 27 1 32 93 57 117 1.91e-16 74.3
MS.gene062865.t1 AT3G16280 54.839 62 27 1 32 93 75 135 2.09e-16 74.7
MS.gene062865.t1 AT2G23340 47.761 67 34 1 27 93 19 84 5.97e-16 72.0
MS.gene062865.t1 AT2G25820 58.621 58 23 1 36 93 26 82 6.76e-16 72.8
MS.gene062865.t1 AT2G35700 52.459 61 28 1 33 93 42 101 8.50e-16 71.6
MS.gene062865.t1 AT4G34410 69.492 59 17 1 35 93 135 192 1.05e-15 72.8
MS.gene062865.t1 AT1G01250 38.333 120 55 5 6 116 6 115 1.05e-15 71.6
MS.gene062865.t1 AT5G64750 66.071 56 17 2 43 98 192 245 1.73e-15 73.2
MS.gene062865.t1 AT5G67190 50.794 63 30 1 31 93 16 77 1.76e-15 70.9
MS.gene062865.t1 AT1G43160 54.878 82 36 1 34 115 59 139 2.08e-15 70.9
MS.gene062865.t1 AT1G71130 52.778 72 26 3 31 95 74 144 2.35e-15 70.1
MS.gene062865.t1 AT5G50080 56.627 83 30 2 11 93 57 133 4.52e-15 70.5
MS.gene062865.t1 AT5G50080 56.627 83 30 2 11 93 66 142 5.01e-15 70.5
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 14 70 5.37e-15 71.2
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 14 70 5.37e-15 71.2
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 14 70 5.37e-15 71.2
MS.gene062865.t1 AT3G57600 55.172 58 25 1 36 93 28 84 6.07e-15 70.9
MS.gene062865.t1 AT2G40350 47.826 69 35 1 26 94 57 124 6.13e-15 68.6
MS.gene062865.t1 AT2G40350 47.826 69 35 1 26 94 64 131 6.44e-15 68.9
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 72 128 6.84e-15 71.2
MS.gene062865.t1 AT4G25480 46.250 80 40 2 15 92 28 106 7.92e-15 69.7
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 72 128 8.29e-15 70.9
MS.gene062865.t1 AT2G40340 58.621 58 23 1 36 93 79 135 8.89e-15 70.9
MS.gene062865.t1 AT3G14230 59.740 77 30 1 20 96 107 182 9.13e-15 71.2
MS.gene062865.t1 AT1G15360 53.125 64 23 2 34 94 5 64 9.21e-15 69.3
MS.gene062865.t1 AT1G15360 53.125 64 23 2 34 94 5 64 9.21e-15 69.3
MS.gene062865.t1 AT3G14230 59.740 77 30 1 20 96 108 183 9.25e-15 71.2
MS.gene062865.t1 AT3G14230 59.740 77 30 1 20 96 112 187 1.03e-14 70.9
MS.gene062865.t1 AT5G07310 68.333 60 18 1 34 93 90 148 1.12e-14 70.1
MS.gene062865.t1 AT5G21960 55.932 59 23 2 36 93 7 63 2.94e-14 68.2
MS.gene062865.t1 AT4G25490 45.000 80 41 2 15 92 25 103 3.22e-14 68.2
MS.gene062865.t1 AT1G21910 45.588 68 36 1 36 103 50 116 3.44e-14 68.2
MS.gene062865.t1 AT5G18450 41.237 97 55 2 35 131 33 127 4.05e-14 68.9
MS.gene062865.t1 AT2G36450 49.315 73 34 3 22 93 2 72 5.95e-14 66.6
MS.gene062865.t1 AT1G53910 60.811 74 26 2 25 98 114 184 7.66e-14 68.6
MS.gene062865.t1 AT1G53910 60.811 74 26 2 25 98 116 186 8.10e-14 68.6
MS.gene062865.t1 AT1G53910 60.811 74 26 2 25 98 116 186 8.10e-14 68.6
MS.gene062865.t1 AT4G25470 47.761 67 34 1 26 92 41 106 1.34e-13 66.2
MS.gene062865.t1 AT1G74930 50.847 59 26 2 36 93 21 77 2.29e-13 65.5
MS.gene062865.t1 AT1G12610 46.875 64 33 1 29 92 23 85 3.12e-13 65.1
MS.gene062865.t1 AT1G63030 48.438 64 32 1 29 92 23 85 5.02e-13 64.3
MS.gene062865.t1 AT1G63030 48.438 64 32 1 29 92 23 85 5.02e-13 64.3
MS.gene062865.t1 AT5G51990 46.269 67 35 1 26 92 44 109 6.26e-13 64.7
MS.gene062865.t1 AT5G25190 49.206 63 31 1 31 93 3 64 1.01e-12 63.5
MS.gene062865.t1 AT1G19210 49.153 59 27 2 36 93 12 68 1.63e-12 62.8
MS.gene062865.t1 AT1G53170 62.712 59 21 1 36 94 31 88 5.12e-12 61.6
MS.gene062865.t1 AT1G22810 43.662 71 35 3 26 93 4 72 1.08e-11 59.7
MS.gene062865.t1 AT1G77200 46.479 71 37 1 23 93 30 99 1.30e-11 61.2
MS.gene062865.t1 AT5G11190 45.000 100 45 3 34 127 5 100 1.45e-11 60.5
MS.gene062865.t1 AT3G25730 33.981 103 60 2 36 138 62 156 2.92e-11 60.8
MS.gene062865.t1 AT5G65510 37.755 98 49 3 36 125 174 267 3.34e-11 60.8
MS.gene062865.t1 AT5G65510 37.755 98 49 3 36 125 232 325 4.14e-11 60.8
MS.gene062865.t1 AT5G65510 37.755 98 49 3 36 125 232 325 4.14e-11 60.8
MS.gene062865.t1 AT5G65510 37.755 98 49 3 36 125 174 267 4.43e-11 60.8

Find 25 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTTGCAGCAGAAATA+AGG 0.215369 1.1:-27213275 MS.gene062865:CDS
AGATCTTGGTGCTGATTATT+TGG 0.227126 1.1:-27212959 MS.gene062865:CDS
AGATGTTAGGATAGATAATT+TGG 0.235247 1.1:-27212992 MS.gene062865:CDS
GCATTCTATGAAACGTAAAA+TGG 0.301674 1.1:-27213040 MS.gene062865:CDS
TTTCTCTTCAAAGCAATAAC+AGG 0.348249 1.1:+27213063 None:intergenic
CCAGAAGAGATGCTTCTATA+TGG 0.374777 1.1:-27213417 None:intergenic
TTGGTTGTGTTTGAAGATCT+TGG 0.399605 1.1:-27212973 MS.gene062865:CDS
GAAATTTGCAGCAGAAATAA+GGG 0.427562 1.1:-27213274 MS.gene062865:CDS
AGAAACATGACACAGATGTT+AGG 0.435842 1.1:-27213005 MS.gene062865:CDS
TTGCTAAGGGTTTGTTCTTG+TGG 0.445829 1.1:+27213378 None:intergenic
GAACGCCTCGATAAGATTTG+TGG 0.460267 1.1:+27213313 None:intergenic
AAAAGGTTAAGGAATCACTT+AGG 0.463233 1.1:-27213125 MS.gene062865:CDS
ATTCAACTAGACATGGCATA+AGG 0.465565 1.1:-27213251 MS.gene062865:CDS
AAAGGTTAAGGAATCACTTA+GGG 0.485766 1.1:-27213124 MS.gene062865:CDS
CTGATGACAATCAAAATCCT+TGG 0.499742 1.1:-27212918 MS.gene062865:CDS
CATGGCATAAGGGTATGGTT+AGG 0.525508 1.1:-27213240 MS.gene062865:CDS
TTCAACTAGACATGGCATAA+GGG 0.528005 1.1:-27213250 MS.gene062865:CDS
CTAGACATGGCATAAGGGTA+TGG 0.532206 1.1:-27213245 MS.gene062865:CDS
AGGCGTTCGACGTAGACCAT+GGG 0.555394 1.1:-27213298 MS.gene062865:CDS
CAAATTACATTAATTCACCA+AGG 0.609277 1.1:+27212901 None:intergenic
GAGGCGTTCGACGTAGACCA+TGG 0.620635 1.1:-27213299 MS.gene062865:CDS
GGCGTTCGACGTAGACCATG+GGG 0.635082 1.1:-27213297 MS.gene062865:CDS
ATAAGGGATTCAACTAGACA+TGG 0.640343 1.1:-27213258 MS.gene062865:CDS
AAGAACCACAAATCTTATCG+AGG 0.675409 1.1:-27213318 MS.gene062865:CDS
GCGTTCGACGTAGACCATGG+GGG 0.753012 1.1:-27213296 MS.gene062865:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGATGTTAGGATAGATAATT+TGG - chr1.1:27213331-27213350 MS.gene062865:CDS 25.0%
!! ACTTAATTTTCCAGTTGAAA+AGG - chr1.1:27213181-27213200 MS.gene062865:CDS 25.0%
AAAAGGTTAAGGAATCACTT+AGG - chr1.1:27213198-27213217 MS.gene062865:CDS 30.0%
AAAGGTTAAGGAATCACTTA+GGG - chr1.1:27213199-27213218 MS.gene062865:CDS 30.0%
GAAATTTGCAGCAGAAATAA+GGG - chr1.1:27213049-27213068 MS.gene062865:CDS 30.0%
GCATTCTATGAAACGTAAAA+TGG - chr1.1:27213283-27213302 MS.gene062865:CDS 30.0%
TTTCTCTTCAAAGCAATAAC+AGG + chr1.1:27213263-27213282 None:intergenic 30.0%
! TTTTCCAGTTGAAAAGGTTA+AGG - chr1.1:27213187-27213206 MS.gene062865:CDS 30.0%
!!! TTCATTGCTACTTTTGCTAA+GGG + chr1.1:27212961-27212980 None:intergenic 30.0%
!!! TTTCATTGCTACTTTTGCTA+AGG + chr1.1:27212962-27212981 None:intergenic 30.0%
AAGAACCACAAATCTTATCG+AGG - chr1.1:27213005-27213024 MS.gene062865:CDS 35.0%
AGAAACATGACACAGATGTT+AGG - chr1.1:27213318-27213337 MS.gene062865:CDS 35.0%
ATAAGGGATTCAACTAGACA+TGG - chr1.1:27213065-27213084 MS.gene062865:CDS 35.0%
ATTCAACTAGACATGGCATA+AGG - chr1.1:27213072-27213091 MS.gene062865:CDS 35.0%
CTGATGACAATCAAAATCCT+TGG - chr1.1:27213405-27213424 MS.gene062865:CDS 35.0%
GGAAATTTGCAGCAGAAATA+AGG - chr1.1:27213048-27213067 MS.gene062865:CDS 35.0%
TTCAACTAGACATGGCATAA+GGG - chr1.1:27213073-27213092 MS.gene062865:CDS 35.0%
TTGGTTGTGTTTGAAGATCT+TGG - chr1.1:27213350-27213369 MS.gene062865:CDS 35.0%
! GATTCCTTAACCTTTTCAAC+TGG + chr1.1:27213194-27213213 None:intergenic 35.0%
!! AGATCTTGGTGCTGATTATT+TGG - chr1.1:27213364-27213383 MS.gene062865:CDS 35.0%
! TTGCTAAGGGTTTGTTCTTG+TGG + chr1.1:27212948-27212967 None:intergenic 40.0%
!!! CAAGCTGCTTTTTCAATGAG+AGG - chr1.1:27213146-27213165 MS.gene062865:CDS 40.0%
CTAGACATGGCATAAGGGTA+TGG - chr1.1:27213078-27213097 MS.gene062865:CDS 45.0%
GAACGCCTCGATAAGATTTG+TGG + chr1.1:27213013-27213032 None:intergenic 45.0%
! CATGGCATAAGGGTATGGTT+AGG - chr1.1:27213083-27213102 MS.gene062865:CDS 45.0%
TCTGCTGCAAATTTCCCCCA+TGG + chr1.1:27213044-27213063 None:intergenic 50.0%
AGGCGTTCGACGTAGACCAT+GGG - chr1.1:27213025-27213044 MS.gene062865:CDS 55.0%
GCGTTCGACGTAGACCATGG+GGG - chr1.1:27213027-27213046 MS.gene062865:CDS 60.0%
GGCGTTCGACGTAGACCATG+GGG - chr1.1:27213026-27213045 MS.gene062865:CDS 60.0%
! GAGGCGTTCGACGTAGACCA+TGG - chr1.1:27213024-27213043 MS.gene062865:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 27212915 27213430 27212915 ID=MS.gene062865
chr1.1 mRNA 27212915 27213430 27212915 ID=MS.gene062865.t1;Parent=MS.gene062865
chr1.1 exon 27212915 27213430 27212915 ID=MS.gene062865.t1.exon1;Parent=MS.gene062865.t1
chr1.1 CDS 27212915 27213430 27212915 ID=cds.MS.gene062865.t1;Parent=MS.gene062865.t1
Gene Sequence

>MS.gene062865

ATGCTTCTATATGGCATGATAACTTCATCACCACAAGAACAAACCCTTAGCAAAAGTAGCAATGAAAAAACAACAAAGAACAACAAAGATAAGAACCACAAATCTTATCGAGGCGTTCGACGTAGACCATGGGGGAAATTTGCAGCAGAAATAAGGGATTCAACTAGACATGGCATAAGGGTATGGTTAGGAACATTTGATAGTGCTGAAGCAGCAGCACTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCAGCTGCAACACTTAATTTTCCAGTTGAAAAGGTTAAGGAATCACTTAGGGACATGAATTATGTGTTGTCTAATGATAATGAGTGTTCACCTGTTATTGCTTTGAAGAGAAAGCATTCTATGAAACGTAAAATGGATGAAAAGAAGAAGAAACATGACACAGATGTTAGGATAGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATGTCTTCTGATGACAATCAAAATCCTTGGTGA
Protein sequence

>MS.gene062865.t1

MLLYGMITSSPQEQTLSKSSNEKTTKNNKDKNHKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAATLNFPVEKVKESLRDMNYVLSNDNECSPVIALKRKHSMKRKMDEKKKKHDTDVRIDNLVVFEDLGADYLEQLLMSSDDNQNPW