Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053412.t1 | XP_003590056.1 | 96.4 | 247 | 7 | 2 | 1 | 246 | 1 | 246 | 1.80E-68 | 269.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053412.t1 | Q8L467 | 62.2 | 135 | 47 | 2 | 112 | 246 | 153 | 283 | 6.9e-24 | 112.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053412.t1 | G7I5E7 | 96.4 | 247 | 7 | 2 | 1 | 246 | 1 | 246 | 1.3e-68 | 269.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene053412.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene053412 | MS.gene65507 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053412.t1 | MTR_1g043430 | 95.951 | 247 | 8 | 2 | 1 | 246 | 1 | 246 | 1.68e-175 | 482 |
MS.gene053412.t1 | MTR_4g081370 | 45.200 | 250 | 109 | 8 | 8 | 246 | 5 | 237 | 1.24e-62 | 196 |
MS.gene053412.t1 | MTR_2g082640 | 46.400 | 250 | 99 | 8 | 8 | 246 | 5 | 230 | 5.83e-61 | 191 |
MS.gene053412.t1 | MTR_4g081370 | 52.542 | 177 | 78 | 3 | 75 | 246 | 18 | 193 | 1.19e-58 | 184 |
MS.gene053412.t1 | MTR_2g089000 | 44.860 | 214 | 107 | 6 | 34 | 246 | 57 | 260 | 6.32e-46 | 154 |
MS.gene053412.t1 | MTR_4g075480 | 44.348 | 115 | 55 | 3 | 94 | 200 | 11 | 124 | 2.31e-18 | 82.4 |
MS.gene053412.t1 | MTR_4g075480 | 44.348 | 115 | 55 | 3 | 94 | 200 | 39 | 152 | 4.57e-18 | 82.0 |
MS.gene053412.t1 | MTR_1g032600 | 43.396 | 106 | 55 | 2 | 94 | 199 | 82 | 182 | 6.24e-18 | 82.0 |
MS.gene053412.t1 | MTR_4g108360 | 39.091 | 110 | 63 | 2 | 78 | 187 | 42 | 147 | 1.23e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053412.t1 | AT4G14410 | 68.085 | 188 | 50 | 4 | 65 | 246 | 94 | 277 | 5.28e-82 | 247 |
MS.gene053412.t1 | AT4G14410 | 68.085 | 188 | 50 | 4 | 65 | 246 | 94 | 277 | 5.28e-82 | 247 |
MS.gene053412.t1 | AT4G14410 | 68.085 | 188 | 50 | 4 | 65 | 246 | 100 | 283 | 7.29e-82 | 247 |
MS.gene053412.t1 | AT3G23210 | 64.205 | 176 | 56 | 3 | 75 | 246 | 119 | 291 | 2.64e-66 | 207 |
MS.gene053412.t1 | AT3G23210 | 64.205 | 176 | 56 | 3 | 75 | 246 | 148 | 320 | 9.92e-66 | 207 |
MS.gene053412.t1 | AT1G51070 | 44.628 | 242 | 111 | 5 | 8 | 246 | 5 | 226 | 3.00e-59 | 187 |
MS.gene053412.t1 | AT5G54680 | 48.705 | 193 | 93 | 1 | 60 | 246 | 42 | 234 | 3.30e-56 | 179 |
MS.gene053412.t1 | AT1G51070 | 50.000 | 184 | 89 | 1 | 66 | 246 | 109 | 292 | 3.36e-54 | 176 |
MS.gene053412.t1 | AT3G19860 | 45.455 | 110 | 53 | 3 | 90 | 195 | 6 | 112 | 1.48e-18 | 82.8 |
MS.gene053412.t1 | AT3G19860 | 40.690 | 145 | 78 | 4 | 90 | 229 | 37 | 178 | 2.14e-18 | 82.8 |
MS.gene053412.t1 | AT3G19860 | 45.455 | 110 | 53 | 3 | 90 | 195 | 59 | 165 | 2.90e-18 | 82.8 |
MS.gene053412.t1 | AT4G36060 | 40.517 | 116 | 64 | 2 | 94 | 209 | 31 | 141 | 6.68e-16 | 75.5 |
MS.gene053412.t1 | AT4G36060 | 40.517 | 116 | 64 | 2 | 94 | 209 | 31 | 141 | 9.35e-16 | 75.1 |
MS.gene053412.t1 | AT4G36060 | 40.517 | 116 | 64 | 2 | 94 | 209 | 49 | 159 | 1.33e-15 | 74.7 |
MS.gene053412.t1 | AT4G36060 | 45.000 | 100 | 50 | 2 | 94 | 189 | 49 | 147 | 1.95e-15 | 74.3 |
Find 63 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAGAAAACACCGATTATT+TGG | 0.195428 | 1.4:-27721872 | MS.gene053412:CDS |
AGAGGAAATAAAATCTTTAA+AGG | 0.209434 | 1.4:-27719365 | MS.gene053412:intron |
ATAAAACCTGCAGGTGAAAT+AGG | 0.311831 | 1.4:+27717928 | None:intergenic |
ATTGGGATATATCCATAGTT+TGG | 0.317921 | 1.4:+27717847 | None:intergenic |
ATCTGTTCTCACAGGTCTCC+CGG | 0.328795 | 1.4:+27719477 | None:intergenic |
GGGAAACCTTGGATTGGAAT+TGG | 0.359731 | 1.4:+27721792 | None:intergenic |
TGGAATTGGACCAGAGGAAA+TGG | 0.359808 | 1.4:+27721806 | None:intergenic |
ATGGCTGTTTATCCAAACTA+TGG | 0.361363 | 1.4:-27717859 | MS.gene053412:CDS |
CAGATAAAGCTACCTCTTCC+TGG | 0.380154 | 1.4:+27720658 | None:intergenic |
TCAGAACAAGTTTCTCTTCA+CGG | 0.386568 | 1.4:+27717992 | None:intergenic |
GAGGCCTGAGCTCATGATCT+TGG | 0.387889 | 1.4:+27717788 | None:intergenic |
TCAAACACCAGTGAACAAAA+TGG | 0.388530 | 1.4:-27717878 | MS.gene053412:CDS |
AGGAAATGGGTGGGAGGAGA+TGG | 0.390447 | 1.4:+27721820 | None:intergenic |
GCAAGTGTGAGCGCGGAAAC+TGG | 0.395611 | 1.4:-27720719 | MS.gene053412:intron |
GCCAAGAAAATCCAAATAAT+CGG | 0.411720 | 1.4:+27721861 | None:intergenic |
CTCCTCCCACCCATTTCCTC+TGG | 0.421811 | 1.4:-27721816 | MS.gene053412:CDS |
AGGCCTGAGCTCATGATCTT+GGG | 0.448736 | 1.4:+27717789 | None:intergenic |
TATGCCTCCTCCTCCTCCAA+TGG | 0.449165 | 1.4:-27717908 | MS.gene053412:CDS |
GGAGGAGATGGGTCGATGAA+AGG | 0.455199 | 1.4:+27721832 | None:intergenic |
ACCTGTGAGAACAGATAAAC+CGG | 0.463303 | 1.4:-27719470 | MS.gene053412:CDS |
CCTCCGCAATTTCTCACGGC+AGG | 0.466062 | 1.4:+27720103 | None:intergenic |
GAGGAGATGGGTCGATGAAA+GGG | 0.467904 | 1.4:+27721833 | None:intergenic |
ACTATGCCTATTTCACCTGC+AGG | 0.471239 | 1.4:-27717934 | MS.gene053412:CDS |
GAGGAAGATAATGCCACATT+GGG | 0.477873 | 1.4:+27717830 | None:intergenic |
CCAGCTTAAAACTGAAGCTC+AGG | 0.489955 | 1.4:-27719416 | MS.gene053412:CDS |
GCAGCCATTGGAGGAGGAGG+AGG | 0.490911 | 1.4:+27717904 | None:intergenic |
ATTAAAGGGAAACCTTGGAT+TGG | 0.492211 | 1.4:+27721786 | None:intergenic |
TCTGTTCTCACAGGTCTCCC+GGG | 0.501370 | 1.4:+27719478 | None:intergenic |
ACAAGCAGAAATTAAGCAGC+AGG | 0.508468 | 1.4:+27717766 | None:intergenic |
TGATAAGCAGCCATTGGAGG+AGG | 0.517216 | 1.4:+27717898 | None:intergenic |
GGTGTTTGATAAGCAGCCAT+TGG | 0.517778 | 1.4:+27717892 | None:intergenic |
ACTGAATCATGCTACAAGTC+AGG | 0.526698 | 1.4:-27720134 | MS.gene053412:CDS |
GGAATTGGACCAGAGGAAAT+GGG | 0.534105 | 1.4:+27721807 | None:intergenic |
TCTGGTCCAATTCCAATCCA+AGG | 0.536101 | 1.4:-27721798 | MS.gene053412:intron |
GCCGGTTTATCTGTTCTCAC+AGG | 0.538866 | 1.4:+27719469 | None:intergenic |
GGAAATGGGTGGGAGGAGAT+GGG | 0.538939 | 1.4:+27721821 | None:intergenic |
TAAGCAGCCATTGGAGGAGG+AGG | 0.543516 | 1.4:+27717901 | None:intergenic |
TGAGGAAGATAATGCCACAT+TGG | 0.545126 | 1.4:+27717829 | None:intergenic |
TGACACACAACAGCACCACT+TGG | 0.545599 | 1.4:+27720692 | None:intergenic |
CGTGTCAAGAAGAGAATACT+AGG | 0.546602 | 1.4:-27720925 | MS.gene053412:CDS |
AAGAAGAGAATACCAGGAAG+AGG | 0.547183 | 1.4:-27720670 | MS.gene053412:intron |
GTTTGATAAGCAGCCATTGG+AGG | 0.553241 | 1.4:+27717895 | None:intergenic |
AAGAAGAGAATACTAGGAAG+AGG | 0.554214 | 1.4:-27720919 | MS.gene053412:intron |
CGTCCCAAGATCATGAGCTC+AGG | 0.561406 | 1.4:-27717792 | MS.gene053412:CDS |
TGAATTTGCAAGTGTGAGCA+CGG | 0.561827 | 1.4:-27720975 | MS.gene053412:intron |
GACGTATCGCGAGCTGATTG+AGG | 0.568638 | 1.4:+27717811 | None:intergenic |
AAGCCTGCCGTGAGAAATTG+CGG | 0.570587 | 1.4:-27720106 | MS.gene053412:CDS |
TCTCCCTCCGCAATTTCTCA+CGG | 0.571048 | 1.4:+27720099 | None:intergenic |
GGAGGAGGCATAAAACCTGC+AGG | 0.582144 | 1.4:+27717919 | None:intergenic |
ATAGCATCATCAAGTATAGC+CGG | 0.585794 | 1.4:+27719451 | None:intergenic |
TGTGTCAAGAAGAGAATACC+AGG | 0.602682 | 1.4:-27720676 | MS.gene053412:CDS |
GACCAGAGGAAATGGGTGGG+AGG | 0.604426 | 1.4:+27721814 | None:intergenic |
GGAGGGAGAAACTCAATGAA+AGG | 0.627343 | 1.4:-27720085 | MS.gene053412:intron |
ATTTGACATTTCAAGTAACG+TGG | 0.635377 | 1.4:-27720951 | MS.gene053412:CDS |
ATTGGACCAGAGGAAATGGG+TGG | 0.638569 | 1.4:+27721810 | None:intergenic |
CTGCCGTGAGAAATTGCGGA+GGG | 0.654916 | 1.4:-27720102 | MS.gene053412:CDS |
AGCAGAAATTAAGCAGCAGG+AGG | 0.661269 | 1.4:+27717769 | None:intergenic |
TTGGATTGGAATTGGACCAG+AGG | 0.672537 | 1.4:+27721800 | None:intergenic |
TTGGACCAGAGGAAATGGGT+GGG | 0.680130 | 1.4:+27721811 | None:intergenic |
TGAATTTGCAAGTGTGAGCG+CGG | 0.690030 | 1.4:-27720726 | MS.gene053412:intron |
CCTGCCGTGAGAAATTGCGG+AGG | 0.708330 | 1.4:-27720103 | MS.gene053412:CDS |
ACTATGGATATATCCCAATG+TGG | 0.718428 | 1.4:-27717843 | MS.gene053412:CDS |
GCGGAAACTGGAATTCCAAG+TGG | 0.725783 | 1.4:-27720707 | MS.gene053412:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATGAATTGAATTAAA+GGG | + | chr1.4:27717897-27717916 | None:intergenic | 10.0% |
!! | TGCAAAATAAAATAAAAAAT+TGG | + | chr1.4:27717931-27717950 | None:intergenic | 10.0% |
!! | TTAAATTAAAATTCAGAAAA+GGG | + | chr1.4:27718140-27718159 | None:intergenic | 10.0% |
!! | TTATATATATGATGATTAAA+GGG | - | chr1.4:27718062-27718081 | MS.gene053412:intron | 10.0% |
!! | TTTAAATTAAAATTCAGAAA+AGG | + | chr1.4:27718141-27718160 | None:intergenic | 10.0% |
!! | TTTATATATATGATGATTAA+AGG | - | chr1.4:27718061-27718080 | MS.gene053412:intron | 10.0% |
!! | ACTTTGAATTACAAATATAT+AGG | - | chr1.4:27718551-27718570 | MS.gene053412:intron | 15.0% |
!! | AGAAAAATATTGATATTGAT+TGG | - | chr1.4:27720784-27720803 | MS.gene053412:intron | 15.0% |
!! | AGAAAAATGTTATAAAATCT+TGG | + | chr1.4:27721626-27721645 | None:intergenic | 15.0% |
!! | ATCAAATGAAAAATTATTAG+AGG | - | chr1.4:27720283-27720302 | MS.gene053412:intron | 15.0% |
!! | GAAAAAATGAATTGAATTAA+AGG | + | chr1.4:27717898-27717917 | None:intergenic | 15.0% |
!! | TTTACTTATTTAAAAATGTG+AGG | - | chr1.4:27719046-27719065 | MS.gene053412:intron | 15.0% |
!!! | AACTTTTATCTTTTTATACT+AGG | + | chr1.4:27720760-27720779 | None:intergenic | 15.0% |
!!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr1.4:27721012-27721031 | MS.gene053412:intron | 15.0% |
!!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr1.4:27721011-27721030 | MS.gene053412:intron | 15.0% |
!! | AAAGTGGAATATATTGTATT+GGG | - | chr1.4:27721036-27721055 | MS.gene053412:intron | 20.0% |
!! | AATTTATGAAAGCTAGTATT+GGG | + | chr1.4:27719953-27719972 | None:intergenic | 20.0% |
!! | AGAAACACTATTAATTTAGA+TGG | - | chr1.4:27721180-27721199 | MS.gene053412:intron | 20.0% |
!! | AGAGGAAATAAAATCTTTAA+AGG | - | chr1.4:27720301-27720320 | MS.gene053412:intron | 20.0% |
!! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1.4:27721068-27721087 | MS.gene053412:intron | 20.0% |
!! | CATCATATAAATGATACAAT+TGG | + | chr1.4:27719977-27719996 | None:intergenic | 20.0% |
!! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1.4:27721069-27721088 | MS.gene053412:intron | 20.0% |
!! | TAATTTATGAAAGCTAGTAT+TGG | + | chr1.4:27719954-27719973 | None:intergenic | 20.0% |
!! | TCAACCATAAGTTTAATATA+TGG | + | chr1.4:27719618-27719637 | None:intergenic | 20.0% |
!! | TTTAATGTAATCATATGTGT+TGG | + | chr1.4:27718286-27718305 | None:intergenic | 20.0% |
!! | TTTACTTATCTGAAAATTTG+AGG | - | chr1.4:27718783-27718802 | MS.gene053412:intron | 20.0% |
!!! | AATAGTGTTTCTATACTTTT+TGG | + | chr1.4:27721172-27721191 | None:intergenic | 20.0% |
!!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr1.4:27721013-27721032 | MS.gene053412:intron | 20.0% |
!!! | ATTTTGTTTTATTACTGAGT+TGG | - | chr1.4:27718180-27718199 | MS.gene053412:intron | 20.0% |
!!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1.4:27721105-27721124 | MS.gene053412:intron | 20.0% |
! | AATTAGATACATACATCAAC+AGG | - | chr1.4:27721571-27721590 | MS.gene053412:intron | 25.0% |
! | ATAAAAATACTTGGAATCAG+TGG | + | chr1.4:27719898-27719917 | None:intergenic | 25.0% |
! | ATTAGATACATACATCAACA+GGG | - | chr1.4:27721572-27721591 | MS.gene053412:intron | 25.0% |
! | CACAATACAAAACATTGAAA+AGG | + | chr1.4:27720099-27720118 | None:intergenic | 25.0% |
! | CTAAAATTCCATTCATTACT+AGG | + | chr1.4:27718481-27718500 | None:intergenic | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | - | chr1.4:27721035-27721054 | MS.gene053412:intron | 25.0% |
! | GATCCTTAAAATCAATTCAA+GGG | - | chr1.4:27721217-27721236 | MS.gene053412:intron | 25.0% |
! | GCTTCCATATATTAAACTTA+TGG | - | chr1.4:27719611-27719630 | MS.gene053412:intron | 25.0% |
! | TCGTCAAATAAAAACATCTA+AGG | - | chr1.4:27720895-27720914 | MS.gene053412:intron | 25.0% |
! | TGATCCTTAAAATCAATTCA+AGG | - | chr1.4:27721216-27721235 | MS.gene053412:intron | 25.0% |
! | TGCAGATTATTCCTAATAAT+CGG | - | chr1.4:27719405-27719424 | MS.gene053412:CDS | 25.0% |
! | TTCCTTCTGAATTATTTGTA+GGG | - | chr1.4:27719504-27719523 | MS.gene053412:CDS | 25.0% |
! | TTTCCTTCTGAATTATTTGT+AGG | - | chr1.4:27719503-27719522 | MS.gene053412:CDS | 25.0% |
!! | ATTAGAAAACACCGATTATT+TGG | - | chr1.4:27717794-27717813 | MS.gene053412:CDS | 25.0% |
!! | TTCTTTTCCCATAACATAAA+GGG | + | chr1.4:27720432-27720451 | None:intergenic | 25.0% |
!! | TTTCTTTTCCCATAACATAA+AGG | + | chr1.4:27720433-27720452 | None:intergenic | 25.0% |
!!! | ATAGGTTGATGGTAATTAAT+AGG | - | chr1.4:27718373-27718392 | MS.gene053412:intron | 25.0% |
!!! | CAATTTTCTAGCTATGTATA+AGG | - | chr1.4:27719710-27719729 | MS.gene053412:intron | 25.0% |
!!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1.4:27721104-27721123 | MS.gene053412:intron | 25.0% |
!!! | TTGATTGCCTTTTTTTATGA+TGG | - | chr1.4:27719429-27719448 | MS.gene053412:CDS | 25.0% |
!!! | TTTGTTACTTATGTTTTGTG+TGG | - | chr1.4:27718637-27718656 | MS.gene053412:intron | 25.0% |
!!! | TTTTTTTAGCAGAATTCACA+TGG | - | chr1.4:27718581-27718600 | MS.gene053412:intron | 25.0% |
AAAAATCTGCCATACAAACA+TGG | + | chr1.4:27719226-27719245 | None:intergenic | 30.0% | |
AACAAGAAACTGGAAATCAT+GGG | + | chr1.4:27719749-27719768 | None:intergenic | 30.0% | |
AACATATCATTTCACCACTA+AGG | + | chr1.4:27720617-27720636 | None:intergenic | 30.0% | |
AGAAAAGCAACAACAAATTC+AGG | + | chr1.4:27718457-27718476 | None:intergenic | 30.0% | |
ATCACTAATAGCAAGAATAC+AGG | - | chr1.4:27721412-27721431 | MS.gene053412:intron | 30.0% | |
ATGATGATATTAGATGAGTC+TGG | - | chr1.4:27719357-27719376 | MS.gene053412:intron | 30.0% | |
ATTGAATTAAAGGGAAACCT+TGG | + | chr1.4:27717888-27717907 | None:intergenic | 30.0% | |
ATTGGGATATATCCATAGTT+TGG | + | chr1.4:27721822-27721841 | None:intergenic | 30.0% | |
CAATGCTCAATTCATTCATA+CGG | - | chr1.4:27720567-27720586 | MS.gene053412:intron | 30.0% | |
CACCTAAGTTAATGCTTTAT+AGG | + | chr1.4:27720680-27720699 | None:intergenic | 30.0% | |
CATTGGACCATCATAAAAAA+AGG | + | chr1.4:27719439-27719458 | None:intergenic | 30.0% | |
CTTATCTGAAAATTTGAGGA+TGG | - | chr1.4:27718787-27718806 | MS.gene053412:intron | 30.0% | |
CTTATTTAAAAATGTGAGGC+AGG | - | chr1.4:27719050-27719069 | MS.gene053412:intron | 30.0% | |
GAAATCTCCCTTTATGTTAT+GGG | - | chr1.4:27720422-27720441 | MS.gene053412:intron | 30.0% | |
GCAGATTATTCCTAATAATC+GGG | - | chr1.4:27719406-27719425 | MS.gene053412:CDS | 30.0% | |
GCCAAGAAAATCCAAATAAT+CGG | + | chr1.4:27717808-27717827 | None:intergenic | 30.0% | |
TCCTTCTGAATTATTTGTAG+GGG | - | chr1.4:27719505-27719524 | MS.gene053412:CDS | 30.0% | |
TGAAATCTCCCTTTATGTTA+TGG | - | chr1.4:27720421-27720440 | MS.gene053412:intron | 30.0% | |
TGCAACTAGCGTATATAATA+AGG | + | chr1.4:27719389-27719408 | None:intergenic | 30.0% | |
TGTATAAATAAAGGGGAAAG+TGG | - | chr1.4:27721020-27721039 | MS.gene053412:intron | 30.0% | |
TTCAGGGAGATAAAAATACT+TGG | + | chr1.4:27719907-27719926 | None:intergenic | 30.0% | |
! | AACATTTTTCTTATCCATGC+AGG | - | chr1.4:27721635-27721654 | MS.gene053412:intron | 30.0% |
! | ACCGATTATTTGGATTTTCT+TGG | - | chr1.4:27717804-27717823 | MS.gene053412:CDS | 30.0% |
! | ATGTTTGTATGGCAGATTTT+TGG | - | chr1.4:27719225-27719244 | MS.gene053412:intron | 30.0% |
! | ATTCAAGTTTGATTGTTGCA+TGG | - | chr1.4:27718090-27718109 | MS.gene053412:intron | 30.0% |
! | ATTTGACATTTCAAGTAACG+TGG | - | chr1.4:27718715-27718734 | MS.gene053412:intron | 30.0% |
! | CAAACTCTGAAGATTAGAAT+TGG | - | chr1.4:27720922-27720941 | MS.gene053412:CDS | 30.0% |
! | CACCTATAAAGCATTAACTT+AGG | - | chr1.4:27720675-27720694 | MS.gene053412:CDS | 30.0% |
! | CTATAAAGCATTAACTTAGG+TGG | - | chr1.4:27720678-27720697 | MS.gene053412:CDS | 30.0% |
! | CTTTTCTTCCTAGTAATGAA+TGG | - | chr1.4:27718470-27718489 | MS.gene053412:intron | 30.0% |
! | TATGTTTTGTGTGGCAAATA+TGG | - | chr1.4:27718646-27718665 | MS.gene053412:intron | 30.0% |
! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1.4:27721082-27721101 | MS.gene053412:intron | 30.0% |
!! | AGTATTTTTATCTCCCTGAA+AGG | - | chr1.4:27719907-27719926 | MS.gene053412:intron | 30.0% |
!! | ATTGAAAAGGTGTTTGGTAA+TGG | + | chr1.4:27720086-27720105 | None:intergenic | 30.0% |
!! | ATTTAGATGGATTAAGCAAG+TGG | - | chr1.4:27721193-27721212 | MS.gene053412:intron | 30.0% |
!! | CAAAACATTGAAAAGGTGTT+TGG | + | chr1.4:27720092-27720111 | None:intergenic | 30.0% |
!! | CTACCCTTGAATTGATTTTA+AGG | + | chr1.4:27721223-27721242 | None:intergenic | 30.0% |
!! | GAATGAATTGAGCATTGAAT+GGG | + | chr1.4:27720564-27720583 | None:intergenic | 30.0% |
!! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1.4:27721083-27721102 | MS.gene053412:intron | 30.0% |
!! | TGAATGAATTGAGCATTGAA+TGG | + | chr1.4:27720565-27720584 | None:intergenic | 30.0% |
!! | TTGTTTTATTACTGAGTTGG+AGG | - | chr1.4:27718183-27718202 | MS.gene053412:intron | 30.0% |
!!! | CTTTTCTTAGCTTTTTCATG+TGG | - | chr1.4:27719664-27719683 | MS.gene053412:intron | 30.0% |
AACATCATTCACATCCTTTC+AGG | + | chr1.4:27719924-27719943 | None:intergenic | 35.0% | |
AAGAAGAGAATACTAGGAAG+AGG | - | chr1.4:27718747-27718766 | MS.gene053412:intron | 35.0% | |
AATCAATTCAAGGGTAGTTG+CGG | - | chr1.4:27721226-27721245 | MS.gene053412:intron | 35.0% | |
ACATCATTCACATCCTTTCA+GGG | + | chr1.4:27719923-27719942 | None:intergenic | 35.0% | |
ACTATGGATATATCCCAATG+TGG | - | chr1.4:27721823-27721842 | MS.gene053412:CDS | 35.0% | |
AGAAAATGGGTCAGTTATTC+CGG | - | chr1.4:27721118-27721137 | MS.gene053412:intron | 35.0% | |
ATAAAACCTGCAGGTGAAAT+AGG | + | chr1.4:27721741-27721760 | None:intergenic | 35.0% | |
ATAGCATCATCAAGTATAGC+CGG | + | chr1.4:27720218-27720237 | None:intergenic | 35.0% | |
ATCATTATCTGTTTGCGCAT+TGG | - | chr1.4:27719192-27719211 | MS.gene053412:intron | 35.0% | |
ATGCCTAACAAGTATCTTCA+AGG | + | chr1.4:27719869-27719888 | None:intergenic | 35.0% | |
ATGCGCAAACAGATAATGAT+AGG | + | chr1.4:27719192-27719211 | None:intergenic | 35.0% | |
ATGGCTGTTTATCCAAACTA+TGG | - | chr1.4:27721807-27721826 | MS.gene053412:CDS | 35.0% | |
ATGTGAGGCAGGAATAATTA+CGG | - | chr1.4:27719061-27719080 | MS.gene053412:intron | 35.0% | |
ATTAAAGGGAAACCTTGGAT+TGG | + | chr1.4:27717883-27717902 | None:intergenic | 35.0% | |
CAAAGTAGGTCAATTATACC+GGG | + | chr1.4:27720976-27720995 | None:intergenic | 35.0% | |
CAACAAGAAACTGGAAATCA+TGG | + | chr1.4:27719750-27719769 | None:intergenic | 35.0% | |
CCAAAGTAGGTCAATTATAC+CGG | + | chr1.4:27720977-27720996 | None:intergenic | 35.0% | |
CCATCAACAAAAGGGAAATA+GGG | + | chr1.4:27718249-27718268 | None:intergenic | 35.0% | |
CTACATAGCCATCAACAAAA+GGG | + | chr1.4:27718257-27718276 | None:intergenic | 35.0% | |
GATTACATCAGTGTTATCGA+TGG | + | chr1.4:27719275-27719294 | None:intergenic | 35.0% | |
GCTTCAAATGATTGCAACAT+TGG | + | chr1.4:27719456-27719475 | None:intergenic | 35.0% | |
TAATAGCAAGAATACAGGTG+TGG | - | chr1.4:27721417-27721436 | MS.gene053412:intron | 35.0% | |
TACACATATCTATCATGCCT+AGG | + | chr1.4:27720055-27720074 | None:intergenic | 35.0% | |
TAGTTCCTACATCAACTGTA+TGG | + | chr1.4:27720647-27720666 | None:intergenic | 35.0% | |
TATTGAATGCAACCATGTGT+CGG | - | chr1.4:27721295-27721314 | MS.gene053412:intron | 35.0% | |
TCAAACACCAGTGAACAAAA+TGG | - | chr1.4:27721788-27721807 | MS.gene053412:intron | 35.0% | |
TCAGAACAAGTTTCTCTTCA+CGG | + | chr1.4:27721677-27721696 | None:intergenic | 35.0% | |
TCCCCTACAAATAATTCAGA+AGG | + | chr1.4:27719509-27719528 | None:intergenic | 35.0% | |
TCTGTGTGAAAAACCAAAGT+AGG | + | chr1.4:27720990-27721009 | None:intergenic | 35.0% | |
TGCCTAACAAGTATCTTCAA+GGG | + | chr1.4:27719868-27719887 | None:intergenic | 35.0% | |
! | ACAGATAATGATAGGTGTTG+TGG | + | chr1.4:27719184-27719203 | None:intergenic | 35.0% |
! | ATACAGTTGATGTAGGAACT+AGG | - | chr1.4:27720646-27720665 | MS.gene053412:intron | 35.0% |
! | ATTATTGTTTTCGTCGTGTC+TGG | - | chr1.4:27718326-27718345 | MS.gene053412:intron | 35.0% |
! | CACTGCATTTTTCTCCAAAT+GGG | + | chr1.4:27720710-27720729 | None:intergenic | 35.0% |
! | TCACTGCATTTTTCTCCAAA+TGG | + | chr1.4:27720711-27720730 | None:intergenic | 35.0% |
! | TGAAGATACTTGTTAGGCAT+CGG | - | chr1.4:27719869-27719888 | MS.gene053412:intron | 35.0% |
! | TGTTTGTGTCATTGCTTCAT+AGG | - | chr1.4:27718355-27718374 | MS.gene053412:intron | 35.0% |
! | TTTTAGCAGAATTCACATGG+TGG | - | chr1.4:27718584-27718603 | MS.gene053412:intron | 35.0% |
!! | AATACTAGGAAGAGGTACTA+TGG | - | chr1.4:27718755-27718774 | MS.gene053412:intron | 35.0% |
!! | TAAACAGCCATTTTGTTCAC+TGG | + | chr1.4:27721798-27721817 | None:intergenic | 35.0% |
!! | TAAGATATTCTGAGACACCT+AGG | - | chr1.4:27720035-27720054 | MS.gene053412:intron | 35.0% |
!! | TGGCTGTTATAGCTTTTTCT+GGG | - | chr1.4:27719684-27719703 | MS.gene053412:intron | 35.0% |
AAAGGGAGATTTCATGAACG+AGG | + | chr1.4:27720415-27720434 | None:intergenic | 40.0% | |
AACCAACATGCAGTCTGTAA+AGG | + | chr1.4:27721497-27721516 | None:intergenic | 40.0% | |
AAGAAGAGAATACCAGGAAG+AGG | - | chr1.4:27718996-27719015 | MS.gene053412:intron | 40.0% | |
ACCTGTGAGAACAGATAAAC+CGG | - | chr1.4:27720196-27720215 | MS.gene053412:intron | 40.0% | |
ACTGAATCATGCTACAAGTC+AGG | - | chr1.4:27719532-27719551 | MS.gene053412:intron | 40.0% | |
AGGCAATCAACCCGATTATT+AGG | + | chr1.4:27719419-27719438 | None:intergenic | 40.0% | |
ATCAGTGTGAATGTTGTGTC+TGG | + | chr1.4:27721255-27721274 | None:intergenic | 40.0% | |
ATGCCTTACATGTGAAGTGT+AGG | - | chr1.4:27721350-27721369 | MS.gene053412:intron | 40.0% | |
CAAAAGGGAAATAGGGCAAA+TGG | + | chr1.4:27718242-27718261 | None:intergenic | 40.0% | |
CCGGTATAATTGACCTACTT+TGG | - | chr1.4:27720974-27720993 | MS.gene053412:intron | 40.0% | |
CGTGTCAAGAAGAGAATACT+AGG | - | chr1.4:27718741-27718760 | MS.gene053412:intron | 40.0% | |
CTCTGTAAACCGACTAACTT+CGG | + | chr1.4:27720593-27720612 | None:intergenic | 40.0% | |
CTTGTGAAGCAACAAGAAAC+TGG | + | chr1.4:27719759-27719778 | None:intergenic | 40.0% | |
CTTTAACTCCTTCTCAAGGA+AGG | - | chr1.4:27721517-27721536 | MS.gene053412:intron | 40.0% | |
CTTTCCAGCTCTTGTTCATT+AGG | - | chr1.4:27720515-27720534 | MS.gene053412:intron | 40.0% | |
GAAAATGGGTCAGTTATTCC+GGG | - | chr1.4:27721119-27721138 | MS.gene053412:intron | 40.0% | |
GAGGAAGATAATGCCACATT+GGG | + | chr1.4:27721839-27721858 | None:intergenic | 40.0% | |
GCCATCAACAAAAGGGAAAT+AGG | + | chr1.4:27718250-27718269 | None:intergenic | 40.0% | |
GCTACATAGCCATCAACAAA+AGG | + | chr1.4:27718258-27718277 | None:intergenic | 40.0% | |
GGTTCTTTAACTCCTTCTCA+AGG | - | chr1.4:27721513-27721532 | MS.gene053412:intron | 40.0% | |
GTGTTGTCAAATTTCTGCCA+TGG | - | chr1.4:27719119-27719138 | MS.gene053412:intron | 40.0% | |
TCAAGGAAGGAAAACGTATC+AGG | - | chr1.4:27721530-27721549 | MS.gene053412:intron | 40.0% | |
TCAGTGTTATCGATGGCAAA+TGG | + | chr1.4:27719268-27719287 | None:intergenic | 40.0% | |
TCCTCTATGCTATAACACCA+TGG | + | chr1.4:27719139-27719158 | None:intergenic | 40.0% | |
TGAATTTGCAAGTGTGAGCA+CGG | - | chr1.4:27718691-27718710 | MS.gene053412:intron | 40.0% | |
TGAGGAAGATAATGCCACAT+TGG | + | chr1.4:27721840-27721859 | None:intergenic | 40.0% | |
TGCCCTTGAAGATACTTGTT+AGG | - | chr1.4:27719863-27719882 | MS.gene053412:intron | 40.0% | |
TGTGTCAAGAAGAGAATACC+AGG | - | chr1.4:27718990-27719009 | MS.gene053412:intron | 40.0% | |
TTAGGTGGTTCATTCCCATT+TGG | - | chr1.4:27720693-27720712 | MS.gene053412:CDS | 40.0% | |
! | CCCTATTTCCCTTTTGTTGA+TGG | - | chr1.4:27718246-27718265 | MS.gene053412:intron | 40.0% |
! | GAGATCCATACAGTTGATGT+AGG | - | chr1.4:27720639-27720658 | MS.gene053412:intron | 40.0% |
! | GTCATTGCTTCATAGGTTGA+TGG | - | chr1.4:27718362-27718381 | MS.gene053412:intron | 40.0% |
! | TACGTTTTCCTTCCTTGAGA+AGG | + | chr1.4:27721528-27721547 | None:intergenic | 40.0% |
!! | GTGGCTGTTATAGCTTTTTC+TGG | - | chr1.4:27719683-27719702 | MS.gene053412:intron | 40.0% |
!!! | TTGAGTGCTGTTTTAGAACC+CGG | - | chr1.4:27720170-27720189 | MS.gene053412:intron | 40.0% |
!!! | TTGTATGGCAGATTTTTGGC+TGG | - | chr1.4:27719229-27719248 | MS.gene053412:intron | 40.0% |
AAACATCTGACACCGACACA+TGG | + | chr1.4:27721310-27721329 | None:intergenic | 45.0% | |
ACTATGCCTATTTCACCTGC+AGG | - | chr1.4:27721732-27721751 | MS.gene053412:intron | 45.0% | |
ATTGTATACTACCTCCGTCC+CGG | - | chr1.4:27720955-27720974 | MS.gene053412:CDS | 45.0% | |
CAGATAAAGCTACCTCTTCC+TGG | + | chr1.4:27719011-27719030 | None:intergenic | 45.0% | |
CCAGCTCTTGTTCATTAGGA+AGG | - | chr1.4:27720519-27720538 | MS.gene053412:intron | 45.0% | |
CCAGCTTAAAACTGAAGCTC+AGG | - | chr1.4:27720250-27720269 | MS.gene053412:intron | 45.0% | |
CCTTCCTAATGAACAAGAGC+TGG | + | chr1.4:27720522-27720541 | None:intergenic | 45.0% | |
CTCCTTTACAGACTGCATGT+TGG | - | chr1.4:27721492-27721511 | MS.gene053412:intron | 45.0% | |
CTCTTGTTCATTAGGAAGGC+TGG | - | chr1.4:27720523-27720542 | MS.gene053412:intron | 45.0% | |
CTTCACATGTAAGGCATGTC+AGG | + | chr1.4:27721347-27721366 | None:intergenic | 45.0% | |
GCACCTACACTTCACATGTA+AGG | + | chr1.4:27721356-27721375 | None:intergenic | 45.0% | |
GGAATTGGACCAGAGGAAAT+GGG | + | chr1.4:27717862-27717881 | None:intergenic | 45.0% | |
GGAGGGAGAAACTCAATGAA+AGG | - | chr1.4:27719581-27719600 | MS.gene053412:intron | 45.0% | |
GTAGGTCAATTATACCGGGA+CGG | + | chr1.4:27720972-27720991 | None:intergenic | 45.0% | |
GTGTTATCGATGGCAAATGG+TGG | + | chr1.4:27719265-27719284 | None:intergenic | 45.0% | |
TAGCCTCTATCTGATCACAC+TGG | + | chr1.4:27718857-27718876 | None:intergenic | 45.0% | |
TCGGTTTACAGAGTCCTTAG+TGG | - | chr1.4:27720600-27720619 | MS.gene053412:intron | 45.0% | |
TCTCCAGTGTGATCAGATAG+AGG | - | chr1.4:27718851-27718870 | MS.gene053412:intron | 45.0% | |
TCTGGTCCAATTCCAATCCA+AGG | - | chr1.4:27717868-27717887 | MS.gene053412:CDS | 45.0% | |
TGAATTTGCAAGTGTGAGCG+CGG | - | chr1.4:27718940-27718959 | MS.gene053412:intron | 45.0% | |
TGGAATTGGACCAGAGGAAA+TGG | + | chr1.4:27717863-27717882 | None:intergenic | 45.0% | |
TTCATACGGCCGAAGTTAGT+CGG | - | chr1.4:27720581-27720600 | MS.gene053412:intron | 45.0% | |
! | ATTTTATACTAGCCGCCGTG+GGG | - | chr1.4:27719158-27719177 | MS.gene053412:intron | 45.0% |
! | CGATGGCAAATGGTGGAATA+TGG | + | chr1.4:27719258-27719277 | None:intergenic | 45.0% |
! | GATTTTATACTAGCCGCCGT+GGG | - | chr1.4:27719157-27719176 | MS.gene053412:intron | 45.0% |
! | GCCATACAAACATGGTGTTG+CGG | + | chr1.4:27719218-27719237 | None:intergenic | 45.0% |
! | GGGAAACCTTGGATTGGAAT+TGG | + | chr1.4:27717877-27717896 | None:intergenic | 45.0% |
! | TTGGATTGGAATTGGACCAG+AGG | + | chr1.4:27717869-27717888 | None:intergenic | 45.0% |
!! | GCCATGGTGTTATAGCATAG+AGG | - | chr1.4:27719135-27719154 | MS.gene053412:intron | 45.0% |
!! | TTCGTTTTTCTCTGCCTGCA+TGG | + | chr1.4:27721652-27721671 | None:intergenic | 45.0% |
!!! | CCTGAGCTTCAGTTTTAAGC+TGG | + | chr1.4:27720253-27720272 | None:intergenic | 45.0% |
!!! | TGAGTGCTGTTTTAGAACCC+GGG | - | chr1.4:27720171-27720190 | MS.gene053412:intron | 45.0% |
AAAAGATACTCCCTCCGTCC+CGG | + | chr1.4:27721140-27721159 | None:intergenic | 50.0% | |
AAGCCTGCCGTGAGAAATTG+CGG | - | chr1.4:27719560-27719579 | MS.gene053412:intron | 50.0% | |
AGGCCTGAGCTCATGATCTT+GGG | + | chr1.4:27721880-27721899 | None:intergenic | 50.0% | |
ATCTGTTCTCACAGGTCTCC+CGG | + | chr1.4:27720192-27720211 | None:intergenic | 50.0% | |
ATGGGTCAGTTATTCCGGGA+CGG | - | chr1.4:27721123-27721142 | MS.gene053412:intron | 50.0% | |
ATTGGACCAGAGGAAATGGG+TGG | + | chr1.4:27717859-27717878 | None:intergenic | 50.0% | |
CAAGAATACAGGTGTGGACG+AGG | - | chr1.4:27721423-27721442 | MS.gene053412:intron | 50.0% | |
GAGGAGATGGGTCGATGAAA+GGG | + | chr1.4:27717836-27717855 | None:intergenic | 50.0% | |
GCCGCAACACCATGTTTGTA+TGG | - | chr1.4:27719214-27719233 | MS.gene053412:intron | 50.0% | |
GCGCTCACACTTGCAAATTC+AGG | + | chr1.4:27718941-27718960 | None:intergenic | 50.0% | |
GCGGAAACTGGAATTCCAAG+TGG | - | chr1.4:27718959-27718978 | MS.gene053412:intron | 50.0% | |
TCTCCCTCCGCAATTTCTCA+CGG | + | chr1.4:27719570-27719589 | None:intergenic | 50.0% | |
TGACACACAACAGCACCACT+TGG | + | chr1.4:27718977-27718996 | None:intergenic | 50.0% | |
TTGGACCAGAGGAAATGGGT+GGG | + | chr1.4:27717858-27717877 | None:intergenic | 50.0% | |
! | GCCGGTTTATCTGTTCTCAC+AGG | + | chr1.4:27720200-27720219 | None:intergenic | 50.0% |
! | GGATTTTATACTAGCCGCCG+TGG | - | chr1.4:27719156-27719175 | MS.gene053412:intron | 50.0% |
AGGAAATGGGTGGGAGGAGA+TGG | + | chr1.4:27717849-27717868 | None:intergenic | 55.0% | |
CGTCCCAAGATCATGAGCTC+AGG | - | chr1.4:27721874-27721893 | MS.gene053412:CDS | 55.0% | |
CTGCCGTGAGAAATTGCGGA+GGG | - | chr1.4:27719564-27719583 | MS.gene053412:intron | 55.0% | |
GACGTATCGCGAGCTGATTG+AGG | + | chr1.4:27721858-27721877 | None:intergenic | 55.0% | |
GAGGCCTGAGCTCATGATCT+TGG | + | chr1.4:27721881-27721900 | None:intergenic | 55.0% | |
GGAAATGGGTGGGAGGAGAT+GGG | + | chr1.4:27717848-27717867 | None:intergenic | 55.0% | |
GGAGGAGATGGGTCGATGAA+AGG | + | chr1.4:27717837-27717856 | None:intergenic | 55.0% | |
GGTCAATTATACCGGGACGG+AGG | + | chr1.4:27720969-27720988 | None:intergenic | 55.0% | |
GTCAGTTATTCCGGGACGGA+GGG | - | chr1.4:27721127-27721146 | MS.gene053412:intron | 55.0% | |
TCTGTTCTCACAGGTCTCCC+GGG | + | chr1.4:27720191-27720210 | None:intergenic | 55.0% | |
! | GGAGGAGGCATAAAACCTGC+AGG | + | chr1.4:27721750-27721769 | None:intergenic | 55.0% |
! | TGATAGGTGTTGTGGCCCCA+CGG | + | chr1.4:27719176-27719195 | None:intergenic | 55.0% |
CCTCCGCAATTTCTCACGGC+AGG | + | chr1.4:27719566-27719585 | None:intergenic | 60.0% | |
CCTGCCGTGAGAAATTGCGG+AGG | - | chr1.4:27719563-27719582 | MS.gene053412:intron | 60.0% | |
CTCCTCCCACCCATTTCCTC+TGG | - | chr1.4:27717850-27717869 | MS.gene053412:CDS | 60.0% | |
GACCAGAGGAAATGGGTGGG+AGG | + | chr1.4:27717855-27717874 | None:intergenic | 60.0% | |
GCAAGTGTGAGCGCGGAAAC+TGG | - | chr1.4:27718947-27718966 | MS.gene053412:intron | 60.0% | |
GGTCAGTTATTCCGGGACGG+AGG | - | chr1.4:27721126-27721145 | MS.gene053412:intron | 60.0% | |
! | TAGGTGTTGTGGCCCCACGG+CGG | + | chr1.4:27719173-27719192 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 27717777 | 27721911 | 27717777 | ID=MS.gene053412 |
chr1.4 | mRNA | 27717777 | 27721911 | 27717777 | ID=MS.gene053412.t1;Parent=MS.gene053412 |
chr1.4 | exon | 27721799 | 27721911 | 27721799 | ID=MS.gene053412.t1.exon1;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27721799 | 27721911 | 27721799 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
chr1.4 | exon | 27720920 | 27720985 | 27720920 | ID=MS.gene053412.t1.exon2;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27720920 | 27720985 | 27720920 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
chr1.4 | exon | 27720671 | 27720736 | 27720671 | ID=MS.gene053412.t1.exon3;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27720671 | 27720736 | 27720671 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
chr1.4 | exon | 27720086 | 27720163 | 27720086 | ID=MS.gene053412.t1.exon4;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27720086 | 27720163 | 27720086 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
chr1.4 | exon | 27719366 | 27719528 | 27719366 | ID=MS.gene053412.t1.exon5;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27719366 | 27719528 | 27719366 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
chr1.4 | exon | 27717777 | 27718031 | 27717777 | ID=MS.gene053412.t1.exon6;Parent=MS.gene053412.t1 |
chr1.4 | CDS | 27717777 | 27718031 | 27717777 | ID=cds.MS.gene053412.t1;Parent=MS.gene053412.t1 |
Gene Sequence |
Protein sequence |