AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65507.t1 MTR_1g043430 93.953 215 12 1 7 221 33 246 3.15e-147 410
MS.gene65507.t1 MTR_2g082640 54.494 178 75 3 49 221 54 230 2.31e-61 192
MS.gene65507.t1 MTR_4g081370 49.282 209 89 5 18 221 41 237 1.79e-60 189
MS.gene65507.t1 MTR_4g081370 53.107 177 77 3 50 221 18 193 7.60e-60 186
MS.gene65507.t1 MTR_2g089000 44.393 214 108 6 9 221 57 260 1.13e-45 152
MS.gene65507.t1 MTR_4g075480 39.103 156 69 6 69 199 11 165 3.62e-19 84.0
MS.gene65507.t1 MTR_4g075480 39.103 156 69 6 69 199 39 193 4.56e-19 84.0
MS.gene65507.t1 MTR_1g032600 43.396 106 55 2 69 174 82 182 2.77e-18 82.4
MS.gene65507.t1 MTR_4g108360 39.091 110 63 2 53 162 42 147 8.50e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65507.t1 AT4G14410 68.085 188 50 4 40 221 94 277 9.21e-83 248
MS.gene65507.t1 AT4G14410 68.085 188 50 4 40 221 94 277 9.21e-83 248
MS.gene65507.t1 AT4G14410 68.085 188 50 4 40 221 100 283 1.18e-82 248
MS.gene65507.t1 AT3G23210 63.636 176 57 2 50 221 119 291 3.73e-67 208
MS.gene65507.t1 AT3G23210 63.636 176 57 2 50 221 148 320 1.71e-66 207
MS.gene65507.t1 AT5G54680 52.247 178 79 1 50 221 57 234 2.36e-57 181
MS.gene65507.t1 AT1G51070 50.262 191 91 2 35 221 36 226 5.74e-57 180
MS.gene65507.t1 AT1G51070 50.543 184 88 1 41 221 109 292 3.26e-55 178
MS.gene65507.t1 AT3G19860 47.170 106 49 3 69 170 10 112 3.17e-19 84.0
MS.gene65507.t1 AT3G19860 47.170 106 49 3 69 170 41 143 7.20e-19 83.6
MS.gene65507.t1 AT3G19860 47.170 106 49 3 69 170 63 165 7.38e-19 84.0
MS.gene65507.t1 AT4G36060 40.517 116 64 2 69 184 31 141 2.21e-16 76.3
MS.gene65507.t1 AT4G36060 40.517 116 64 2 69 184 31 141 3.17e-16 75.9
MS.gene65507.t1 AT4G36060 40.171 117 65 2 69 185 49 160 5.34e-16 75.5
MS.gene65507.t1 AT4G36060 40.517 116 64 2 69 184 49 159 8.38e-16 74.7

Find 47 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGAAATAAAATCTTTAA+AGG 0.209434 1.3:+26242522 MS.gene65507:CDS
ATAAAACCTGCAGGTGAAAT+AGG 0.311831 1.3:-26243683 None:intergenic
ATCTGTTCTCACAGGTCTCC+CGG 0.328795 1.3:-26242410 None:intergenic
ATTGGGATATATCCGTAGTT+TGG 0.338409 1.3:-26243764 None:intergenic
CAGATAAAGCTACCTCTTCC+TGG 0.380154 1.3:-26241236 None:intergenic
TCAGAACAAGTTTCTCTTCA+CGG 0.386568 1.3:-26243619 None:intergenic
GAGGCCTGAGCTCATGATCT+TGG 0.387889 1.3:-26243823 None:intergenic
GCAAGTGTGAGCGCGGAAAC+TGG 0.395611 1.3:+26241175 MS.gene65507:intron
TCAAGCACCAGTGAACAAAA+TGG 0.407078 1.3:+26243733 MS.gene65507:CDS
AGGCCTGAGCTCATGATCTT+GGG 0.448736 1.3:-26243822 None:intergenic
TATGCCTCCTCCTCCTCCAA+TGG 0.449165 1.3:+26243703 MS.gene65507:CDS
ACCTGTGAGAACAGATAAAC+CGG 0.463303 1.3:+26242417 MS.gene65507:CDS
CCTCCGCAATTTCTCACGGC+AGG 0.466062 1.3:-26241791 None:intergenic
ACTATGCCTATTTCACCTGC+AGG 0.471239 1.3:+26243677 MS.gene65507:CDS
GAGGAAGATAATGCCACATT+GGG 0.477873 1.3:-26243781 None:intergenic
CCAGCTTAAAACTGAAGCTC+AGG 0.489955 1.3:+26242471 MS.gene65507:CDS
GCAGCCATTGGAGGAGGAGG+AGG 0.490911 1.3:-26243707 None:intergenic
TCTGTTCTCACAGGTCTCCC+GGG 0.501370 1.3:-26242409 None:intergenic
ACAAGCAGAAATTAAGCAGC+AGG 0.508468 1.3:-26243845 None:intergenic
ACTGAATCATGCTACAAGTC+AGG 0.526698 1.3:+26241760 MS.gene65507:CDS
GCCGGTTTATCTGTTCTCAC+AGG 0.538866 1.3:-26242418 None:intergenic
TAAGCAGCCATTGGAGGAGG+AGG 0.543516 1.3:-26243710 None:intergenic
TGAGGAAGATAATGCCACAT+TGG 0.545126 1.3:-26243782 None:intergenic
TGACACACAACAGCACCACT+TGG 0.545599 1.3:-26241202 None:intergenic
CGTGTCAAGAAGAGAATACT+AGG 0.546602 1.3:+26240969 MS.gene65507:CDS
AAGAAGAGAATACCAGGAAG+AGG 0.547183 1.3:+26241224 MS.gene65507:CDS
TGATAAGCAGCCATTGGAGG+AGG 0.547368 1.3:-26243713 None:intergenic
AAGAAGAGAATACTAGGAAG+AGG 0.554214 1.3:+26240975 MS.gene65507:CDS
GGTGCTTGATAAGCAGCCAT+TGG 0.554669 1.3:-26243719 None:intergenic
CGTCCCAAGATCATGAGCTC+AGG 0.561406 1.3:+26243819 MS.gene65507:CDS
GCTTGATAAGCAGCCATTGG+AGG 0.564164 1.3:-26243716 None:intergenic
GACGTATCGCGAGCTGATTG+AGG 0.568638 1.3:-26243800 None:intergenic
AAGCCTGCCGTGAGAAATTG+CGG 0.570587 1.3:+26241788 MS.gene65507:CDS
TCTCCCTCCGCAATTTCTCA+CGG 0.571048 1.3:-26241795 None:intergenic
GGAGGAGGCATAAAACCTGC+AGG 0.582144 1.3:-26243692 None:intergenic
ATGGCTGTTTATCCAAACTA+CGG 0.584060 1.3:+26243752 MS.gene65507:CDS
TGAATTTGCAAGTGTGAGCA+CGG 0.584151 1.3:+26240919 MS.gene65507:CDS
ATAGCATCATCAAGTATAGC+CGG 0.585794 1.3:-26242436 None:intergenic
TGTGTCAAGAAGAGAATACC+AGG 0.602682 1.3:+26241218 MS.gene65507:CDS
GGAGGGAGAAACTCAATGAA+AGG 0.627343 1.3:+26241809 MS.gene65507:CDS
ATTTGACATTTCAAGTAACG+TGG 0.635377 1.3:+26240943 MS.gene65507:CDS
CTGCCGTGAGAAATTGCGGA+GGG 0.654916 1.3:+26241792 MS.gene65507:CDS
AGCAGAAATTAAGCAGCAGG+AGG 0.661269 1.3:-26243842 None:intergenic
TGAATTTGCAAGTGTGAGCG+CGG 0.690030 1.3:+26241168 MS.gene65507:intron
CCTGCCGTGAGAAATTGCGG+AGG 0.708330 1.3:+26241791 MS.gene65507:CDS
GCGGAAACTGGAATTCCAAG+TGG 0.725783 1.3:+26241187 MS.gene65507:CDS
ACTACGGATATATCCCAATG+TGG 0.731941 1.3:+26243768 MS.gene65507:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAATTTATATTATTTTCT+TGG + chr1.3:26243099-26243118 MS.gene65507:intron 10.0%
!! AGAAAAATATTGATATTGAT+TGG + chr1.3:26243012-26243031 MS.gene65507:intron 15.0%
!! AGAAAAATGTTATAAAATCT+TGG - chr1.3:26243571-26243590 None:intergenic 15.0%
!! ATCAAATGAAAAATTATTAG+AGG + chr1.3:26242504-26242523 MS.gene65507:CDS 15.0%
!! TTTACTTATTTAAAAATGTG+AGG + chr1.3:26241274-26241293 MS.gene65507:intron 15.0%
!!! AACTTTTATCTTTTTATACT+AGG - chr1.3:26242988-26243007 None:intergenic 15.0%
!! AGAAACACTATTAATTTAGA+TGG + chr1.3:26243217-26243236 MS.gene65507:intron 20.0%
!! AGAGGAAATAAAATCTTTAA+AGG + chr1.3:26242522-26242541 MS.gene65507:CDS 20.0%
!! CATCATATAAATGATACAAT+TGG - chr1.3:26242198-26242217 None:intergenic 20.0%
!! TCAACCATAAGTTTAATATA+TGG - chr1.3:26241846-26241865 None:intergenic 20.0%
!! TTTACTTATCTGAAAATTTG+AGG + chr1.3:26241011-26241030 MS.gene65507:intron 20.0%
!!! AATAGTGTTTCTATACTTTT+TGG - chr1.3:26243209-26243228 None:intergenic 20.0%
!!! TTGATTACCTTTTTTTATGA+TGG + chr1.3:26241657-26241676 MS.gene65507:intron 20.0%
! AATTAGATACATACATCAAC+AGG + chr1.3:26243516-26243535 MS.gene65507:intron 25.0%
! ATAAAAATACTTGGAATCAG+TGG - chr1.3:26242125-26242144 None:intergenic 25.0%
! ATTAGATACATACATCAACA+GGG + chr1.3:26243517-26243536 MS.gene65507:intron 25.0%
! CAAAATCTGAAGATTAGAAT+TGG + chr1.3:26243150-26243169 MS.gene65507:intron 25.0%
! CACAATACAAAACATTGAAA+AGG - chr1.3:26242320-26242339 None:intergenic 25.0%
! CATTAGACCATCATAAAAAA+AGG - chr1.3:26241667-26241686 None:intergenic 25.0%
! GATCCTTAAAATCAATTCAA+GGG + chr1.3:26243254-26243273 MS.gene65507:intron 25.0%
! GCTTCCATATATTAAACTTA+TGG + chr1.3:26241839-26241858 MS.gene65507:intron 25.0%
! TGATCCTTAAAATCAATTCA+AGG + chr1.3:26243253-26243272 MS.gene65507:intron 25.0%
! TGCAGATTATTCCTAATAAT+CGG + chr1.3:26241633-26241652 MS.gene65507:intron 25.0%
! TTCCTTCTGAATTATTTGTA+GGG + chr1.3:26241732-26241751 MS.gene65507:intron 25.0%
! TTTCCTTCTGAATTATTTGT+AGG + chr1.3:26241731-26241750 MS.gene65507:intron 25.0%
!! TTCTTTTCCCATAACATAAA+GGG - chr1.3:26242653-26242672 None:intergenic 25.0%
!! TTTCTTTTCCCATAACATAA+AGG - chr1.3:26242654-26242673 None:intergenic 25.0%
!!! CAATTTTCTAGCTATGTATA+AGG + chr1.3:26241937-26241956 MS.gene65507:intron 25.0%
AAAAATCTGCCATACAAACA+TGG - chr1.3:26241454-26241473 None:intergenic 30.0%
AACAAGAAACTGGAAATCAT+GGG - chr1.3:26241976-26241995 None:intergenic 30.0%
ATCACTAATAGCAAGAATAC+AGG + chr1.3:26243357-26243376 MS.gene65507:intron 30.0%
ATGATGATATTAGATGAGTC+TGG + chr1.3:26241585-26241604 MS.gene65507:intron 30.0%
CAATGCTCAATTCATTCATA+CGG + chr1.3:26242788-26242807 MS.gene65507:intron 30.0%
CACCTAAGTTAATGCTTTAT+AGG - chr1.3:26242901-26242920 None:intergenic 30.0%
CTTATCTGAAAATTTGAGGA+TGG + chr1.3:26241015-26241034 MS.gene65507:intron 30.0%
CTTATTTAAAAATGTGAGGC+AGG + chr1.3:26241278-26241297 MS.gene65507:intron 30.0%
GAAATCTCCCTTTATGTTAT+GGG + chr1.3:26242643-26242662 MS.gene65507:intron 30.0%
GCAGATTATTCCTAATAATC+GGG + chr1.3:26241634-26241653 MS.gene65507:intron 30.0%
TCCTTCTGAATTATTTGTAG+GGG + chr1.3:26241733-26241752 MS.gene65507:intron 30.0%
TCGTCAAATAAAAACACCTA+AGG + chr1.3:26243123-26243142 MS.gene65507:intron 30.0%
TGAAATCTCCCTTTATGTTA+TGG + chr1.3:26242642-26242661 MS.gene65507:intron 30.0%
TTCAGGGAGATAAAAATACT+TGG - chr1.3:26242134-26242153 None:intergenic 30.0%
! AACATTTTTCTTATCCATGC+AGG + chr1.3:26243580-26243599 MS.gene65507:intron 30.0%
! ATGTTTGTATGGCAGATTTT+TGG + chr1.3:26241453-26241472 MS.gene65507:intron 30.0%
! ATTTGACATTTCAAGTAACG+TGG + chr1.3:26240943-26240962 MS.gene65507:CDS 30.0%
! CACCTATAAAGCATTAACTT+AGG + chr1.3:26242896-26242915 MS.gene65507:intron 30.0%
! CACTACATTTTTCTCCAAAT+GGG - chr1.3:26242931-26242950 None:intergenic 30.0%
! CTATAAAGCATTAACTTAGG+TGG + chr1.3:26242899-26242918 MS.gene65507:intron 30.0%
! CTTCAGATTTTGAATTCCTT+AGG - chr1.3:26243142-26243161 None:intergenic 30.0%
! TCACTACATTTTTCTCCAAA+TGG - chr1.3:26242932-26242951 None:intergenic 30.0%
!! AGTATTTTTATCTCCCTGAA+AGG + chr1.3:26242134-26242153 MS.gene65507:intron 30.0%
!! ATTGAAAAGGTGTTTGGTAA+TGG - chr1.3:26242307-26242326 None:intergenic 30.0%
!! ATTTAGATGGATTAAGCAAG+TGG + chr1.3:26243230-26243249 MS.gene65507:intron 30.0%
!! CAAAACATTGAAAAGGTGTT+TGG - chr1.3:26242313-26242332 None:intergenic 30.0%
!! CTACCCTTGAATTGATTTTA+AGG - chr1.3:26243260-26243279 None:intergenic 30.0%
!! GAATGAATTGAGCATTGAAT+GGG - chr1.3:26242785-26242804 None:intergenic 30.0%
!! TGAATGAATTGAGCATTGAA+TGG - chr1.3:26242786-26242805 None:intergenic 30.0%
AACATCATTCACATCCTTTC+AGG - chr1.3:26242151-26242170 None:intergenic 35.0%
AAGAAGAGAATACTAGGAAG+AGG + chr1.3:26240975-26240994 MS.gene65507:CDS 35.0%
AATCAATTCAAGGGTAGTTG+CGG + chr1.3:26243263-26243282 MS.gene65507:intron 35.0%
ACATCATTCACATCCTTTCA+GGG - chr1.3:26242150-26242169 None:intergenic 35.0%
ACCATATCATTTCACCACTA+AGG - chr1.3:26242838-26242857 None:intergenic 35.0%
AGGTAATCAACCCGATTATT+AGG - chr1.3:26241647-26241666 None:intergenic 35.0%
ATAAAACCTGCAGGTGAAAT+AGG - chr1.3:26243686-26243705 None:intergenic 35.0%
ATAGCATCATCAAGTATAGC+CGG - chr1.3:26242439-26242458 None:intergenic 35.0%
ATCATTATCTGTTTGCGCAT+TGG + chr1.3:26241420-26241439 MS.gene65507:intron 35.0%
ATGCCTAACAAGTATCTTCA+AGG - chr1.3:26242096-26242115 None:intergenic 35.0%
ATGCGCAAACAGATAATGAT+AGG - chr1.3:26241420-26241439 None:intergenic 35.0%
ATGGCTGTTTATCCAAACTA+CGG + chr1.3:26243752-26243771 MS.gene65507:CDS 35.0%
ATGTGAGGCAGGAATAATTA+CGG + chr1.3:26241289-26241308 MS.gene65507:intron 35.0%
ATTGGGATATATCCGTAGTT+TGG - chr1.3:26243767-26243786 None:intergenic 35.0%
CAACAAGAAACTGGAAATCA+TGG - chr1.3:26241977-26241996 None:intergenic 35.0%
GATTACATCAGTGTTATCGA+TGG - chr1.3:26241503-26241522 None:intergenic 35.0%
TAATAGCAAGAATACAGGTG+TGG + chr1.3:26243362-26243381 MS.gene65507:intron 35.0%
TACACATATCTATCATGCCT+AGG - chr1.3:26242276-26242295 None:intergenic 35.0%
TAGGAATAATCTGCAACTAG+CGG - chr1.3:26241628-26241647 None:intergenic 35.0%
TAGTTCCTACATCAACTGTA+TGG - chr1.3:26242868-26242887 None:intergenic 35.0%
TCAGAACAAGTTTCTCTTCA+CGG - chr1.3:26243622-26243641 None:intergenic 35.0%
TCCCCTACAAATAATTCAGA+AGG - chr1.3:26241737-26241756 None:intergenic 35.0%
TCCTTAGTGGTGAAATGATA+TGG + chr1.3:26242834-26242853 MS.gene65507:intron 35.0%
TGCCTAACAAGTATCTTCAA+GGG - chr1.3:26242095-26242114 None:intergenic 35.0%
! ACAGATAATGATAGGTGTTG+TGG - chr1.3:26241412-26241431 None:intergenic 35.0%
! ATACAGTTGATGTAGGAACT+AGG + chr1.3:26242867-26242886 MS.gene65507:intron 35.0%
! TGAAGATACTTGTTAGGCAT+CGG + chr1.3:26242096-26242115 MS.gene65507:intron 35.0%
! TGCAACTAGCGGATATAATA+AGG - chr1.3:26241617-26241636 None:intergenic 35.0%
!! AATACTAGGAAGAGGTACTA+TGG + chr1.3:26240983-26241002 MS.gene65507:intron 35.0%
!! TAAACAGCCATTTTGTTCAC+TGG - chr1.3:26243743-26243762 None:intergenic 35.0%
!! TAAGATATTCTGAGACACCT+AGG + chr1.3:26242256-26242275 MS.gene65507:intron 35.0%
!! TGGCTGTTATAGCTTTTTCT+GGG + chr1.3:26241911-26241930 MS.gene65507:intron 35.0%
AAAGGGAGATTTCATGAACG+AGG - chr1.3:26242636-26242655 None:intergenic 40.0%
AACCAACATGCAGTCTGTAA+AGG - chr1.3:26243442-26243461 None:intergenic 40.0%
AAGAAGAGAATACCAGGAAG+AGG + chr1.3:26241224-26241243 MS.gene65507:CDS 40.0%
ACCTGTGAGAACAGATAAAC+CGG + chr1.3:26242417-26242436 MS.gene65507:CDS 40.0%
ACTACGGATATATCCCAATG+TGG + chr1.3:26243768-26243787 MS.gene65507:CDS 40.0%
ACTGAATCATGCTACAAGTC+AGG + chr1.3:26241760-26241779 MS.gene65507:CDS 40.0%
ATGCCTTACATGTGAAGTGT+AGG + chr1.3:26243295-26243314 MS.gene65507:intron 40.0%
CGTGTCAAGAAGAGAATACT+AGG + chr1.3:26240969-26240988 MS.gene65507:CDS 40.0%
CTCTGTAAACCGACTAACTT+CGG - chr1.3:26242814-26242833 None:intergenic 40.0%
CTTGTGAAGCAACAAGAAAC+TGG - chr1.3:26241986-26242005 None:intergenic 40.0%
CTTTAACTCCTTCTCAAGGA+AGG + chr1.3:26243462-26243481 MS.gene65507:intron 40.0%
CTTTCCAGCTCTTGTTCATT+AGG + chr1.3:26242736-26242755 MS.gene65507:intron 40.0%
GAAAAAGCTATAACAGCCAC+AGG - chr1.3:26241910-26241929 None:intergenic 40.0%
GAGGAAGATAATGCCACATT+GGG - chr1.3:26243784-26243803 None:intergenic 40.0%
GGTTCTTTAACTCCTTCTCA+AGG + chr1.3:26243458-26243477 MS.gene65507:intron 40.0%
GTGTTGTCAAATTTCTGCCA+TGG + chr1.3:26241347-26241366 MS.gene65507:intron 40.0%
TCAAGCACCAGTGAACAAAA+TGG + chr1.3:26243733-26243752 MS.gene65507:CDS 40.0%
TCAAGGAAGGAAAACGTATC+AGG + chr1.3:26243475-26243494 MS.gene65507:intron 40.0%
TCAGTGTTATCGATGGCAAA+TGG - chr1.3:26241496-26241515 None:intergenic 40.0%
TCCTCTATGCTATAACACCA+TGG - chr1.3:26241367-26241386 None:intergenic 40.0%
TGAATTTGCAAGTGTGAGCA+CGG + chr1.3:26240919-26240938 MS.gene65507:CDS 40.0%
TGAGGAAGATAATGCCACAT+TGG - chr1.3:26243785-26243804 None:intergenic 40.0%
TGCCCTTGAAGATACTTGTT+AGG + chr1.3:26242090-26242109 MS.gene65507:intron 40.0%
TGGCAGAAATTTGACAACAC+TGG - chr1.3:26241347-26241366 None:intergenic 40.0%
TGTGTCAAGAAGAGAATACC+AGG + chr1.3:26241218-26241237 MS.gene65507:CDS 40.0%
TTAGGTGGTTCATTCCCATT+TGG + chr1.3:26242914-26242933 MS.gene65507:intron 40.0%
! GAGATCCATACAGTTGATGT+AGG + chr1.3:26242860-26242879 MS.gene65507:intron 40.0%
! TACGTTTTCCTTCCTTGAGA+AGG - chr1.3:26243473-26243492 None:intergenic 40.0%
!! GCTTTTCTTAGCTTTTCCTG+TGG + chr1.3:26241891-26241910 MS.gene65507:intron 40.0%
!! GTGGCTGTTATAGCTTTTTC+TGG + chr1.3:26241910-26241929 MS.gene65507:intron 40.0%
!!! TTGAGTGCTGTTTTAGAACC+CGG + chr1.3:26242391-26242410 MS.gene65507:CDS 40.0%
!!! TTGTATGGCAGATTTTTGGC+TGG + chr1.3:26241457-26241476 MS.gene65507:intron 40.0%
ACTATGCCTATTTCACCTGC+AGG + chr1.3:26243677-26243696 MS.gene65507:CDS 45.0%
CAGATAAAGCTACCTCTTCC+TGG - chr1.3:26241239-26241258 None:intergenic 45.0%
CCAGCTCTTGTTCATTAGGA+AGG + chr1.3:26242740-26242759 MS.gene65507:intron 45.0%
CCAGCTTAAAACTGAAGCTC+AGG + chr1.3:26242471-26242490 MS.gene65507:CDS 45.0%
CCTTCCTAATGAACAAGAGC+TGG - chr1.3:26242743-26242762 None:intergenic 45.0%
CTCCTTTACAGACTGCATGT+TGG + chr1.3:26243437-26243456 MS.gene65507:intron 45.0%
CTCTTGTTCATTAGGAAGGC+TGG + chr1.3:26242744-26242763 MS.gene65507:intron 45.0%
CTTCACATGTAAGGCATGTC+TGG - chr1.3:26243292-26243311 None:intergenic 45.0%
GCACCTACACTTCACATGTA+AGG - chr1.3:26243301-26243320 None:intergenic 45.0%
GGAGGGAGAAACTCAATGAA+AGG + chr1.3:26241809-26241828 MS.gene65507:CDS 45.0%
GTGTTATCGATGGCAAATGG+TGG - chr1.3:26241493-26241512 None:intergenic 45.0%
TAGCCTCTATCTGATCACAC+TGG - chr1.3:26241085-26241104 None:intergenic 45.0%
TCGGTTTACAGAGTCCTTAG+TGG + chr1.3:26242821-26242840 MS.gene65507:intron 45.0%
TCTCCAGTGTGATCAGATAG+AGG + chr1.3:26241079-26241098 MS.gene65507:intron 45.0%
TGAATTTGCAAGTGTGAGCG+CGG + chr1.3:26241168-26241187 MS.gene65507:intron 45.0%
TTCATACGGCCGAAGTTAGT+CGG + chr1.3:26242802-26242821 MS.gene65507:intron 45.0%
! ATTTTATACTAGCCGCCGTG+GGG + chr1.3:26241386-26241405 MS.gene65507:intron 45.0%
! CGATGGCAAATGGTGGAATA+TGG - chr1.3:26241486-26241505 None:intergenic 45.0%
! GATTTTATACTAGCCGCCGT+GGG + chr1.3:26241385-26241404 MS.gene65507:intron 45.0%
! GCCATACAAACATGGTGTTG+CGG - chr1.3:26241446-26241465 None:intergenic 45.0%
!! GCCATGGTGTTATAGCATAG+AGG + chr1.3:26241363-26241382 MS.gene65507:intron 45.0%
!! TTCGTTTTTCTCTGCCTGCA+TGG - chr1.3:26243597-26243616 None:intergenic 45.0%
!!! CCTGAGCTTCAGTTTTAAGC+TGG - chr1.3:26242474-26242493 None:intergenic 45.0%
!!! TGAGTGCTGTTTTAGAACCC+GGG + chr1.3:26242392-26242411 MS.gene65507:CDS 45.0%
AAGCCTGCCGTGAGAAATTG+CGG + chr1.3:26241788-26241807 MS.gene65507:CDS 50.0%
AGGCCTGAGCTCATGATCTT+GGG - chr1.3:26243825-26243844 None:intergenic 50.0%
ATCTGTTCTCACAGGTCTCC+CGG - chr1.3:26242413-26242432 None:intergenic 50.0%
CAAGAATACAGGTGTGGACG+AGG + chr1.3:26243368-26243387 MS.gene65507:intron 50.0%
GCCGCAACACCATGTTTGTA+TGG + chr1.3:26241442-26241461 MS.gene65507:intron 50.0%
GCGCTCACACTTGCAAATTC+AGG - chr1.3:26241169-26241188 None:intergenic 50.0%
GCGGAAACTGGAATTCCAAG+TGG + chr1.3:26241187-26241206 MS.gene65507:CDS 50.0%
GCTTGATAAGCAGCCATTGG+AGG - chr1.3:26243719-26243738 None:intergenic 50.0%
GGTGCTTGATAAGCAGCCAT+TGG - chr1.3:26243722-26243741 None:intergenic 50.0%
TCTCCCTCCGCAATTTCTCA+CGG - chr1.3:26241798-26241817 None:intergenic 50.0%
TGACACACAACAGCACCACT+TGG - chr1.3:26241205-26241224 None:intergenic 50.0%
TGATAAGCAGCCATTGGAGG+AGG - chr1.3:26243716-26243735 None:intergenic 50.0%
! GCCGGTTTATCTGTTCTCAC+AGG - chr1.3:26242421-26242440 None:intergenic 50.0%
! GGATTTTATACTAGCCGCCG+TGG + chr1.3:26241384-26241403 MS.gene65507:intron 50.0%
CGTCCCAAGATCATGAGCTC+AGG + chr1.3:26243819-26243838 MS.gene65507:CDS 55.0%
CTGCCGTGAGAAATTGCGGA+GGG + chr1.3:26241792-26241811 MS.gene65507:CDS 55.0%
GACGTATCGCGAGCTGATTG+AGG - chr1.3:26243803-26243822 None:intergenic 55.0%
GAGGCCTGAGCTCATGATCT+TGG - chr1.3:26243826-26243845 None:intergenic 55.0%
TAAGCAGCCATTGGAGGAGG+AGG - chr1.3:26243713-26243732 None:intergenic 55.0%
TATGCCTCCTCCTCCTCCAA+TGG + chr1.3:26243703-26243722 MS.gene65507:CDS 55.0%
TCTGTTCTCACAGGTCTCCC+GGG - chr1.3:26242412-26242431 None:intergenic 55.0%
! GGAGGAGGCATAAAACCTGC+AGG - chr1.3:26243695-26243714 None:intergenic 55.0%
! TGATAGGTGTTGTGGCCCCA+CGG - chr1.3:26241404-26241423 None:intergenic 55.0%
CCTCCGCAATTTCTCACGGC+AGG - chr1.3:26241794-26241813 None:intergenic 60.0%
CCTGCCGTGAGAAATTGCGG+AGG + chr1.3:26241791-26241810 MS.gene65507:CDS 60.0%
GCAAGTGTGAGCGCGGAAAC+TGG + chr1.3:26241175-26241194 MS.gene65507:intron 60.0%
GCAGCCATTGGAGGAGGAGG+AGG - chr1.3:26243710-26243729 None:intergenic 65.0%
! TAGGTGTTGTGGCCCCACGG+CGG - chr1.3:26241401-26241420 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 26240893 26243856 26240893 ID=MS.gene65507
chr1.3 mRNA 26240893 26243856 26240893 ID=MS.gene65507.t1;Parent=MS.gene65507
chr1.3 exon 26240893 26240996 26240893 ID=MS.gene65507.t1.exon1;Parent=MS.gene65507.t1
chr1.3 CDS 26240893 26240996 26240893 ID=cds.MS.gene65507.t1;Parent=MS.gene65507.t1
chr1.3 exon 26241180 26241245 26241180 ID=MS.gene65507.t1.exon2;Parent=MS.gene65507.t1
chr1.3 CDS 26241180 26241245 26241180 ID=cds.MS.gene65507.t1;Parent=MS.gene65507.t1
chr1.3 exon 26241753 26241830 26241753 ID=MS.gene65507.t1.exon3;Parent=MS.gene65507.t1
chr1.3 CDS 26241753 26241830 26241753 ID=cds.MS.gene65507.t1;Parent=MS.gene65507.t1
chr1.3 exon 26242381 26242543 26242381 ID=MS.gene65507.t1.exon4;Parent=MS.gene65507.t1
chr1.3 CDS 26242381 26242543 26242381 ID=cds.MS.gene65507.t1;Parent=MS.gene65507.t1
chr1.3 exon 26243602 26243856 26243602 ID=MS.gene65507.t1.exon5;Parent=MS.gene65507.t1
chr1.3 CDS 26243602 26243856 26243602 ID=cds.MS.gene65507.t1;Parent=MS.gene65507.t1
Gene Sequence

>MS.gene65507

ATGGCTGATACGATTTCTTTTTCGTCTGAATTTGCAAGTGTGAGCACGGAATTTGACATTTCAAGTAACGTGGTTGCGTGTCAAGAAGAGAATACTAGGAAGAGGTACTATGGAGTGATTTACTTATCTGAAAATTTGAGGATGGAATAATTACTGTCTTCAAATTACGCTTTTGATTCTATGTAATCTCCAGTGTGATCAGATAGAGGCTATATCAACACTATAGCGTAGCTTATGTTTTATGTAGCAAATATGTCTGATAGATTTTTTTTGCCTGAATTTGCAAGTGTGAGCGCGGAAACTGGAATTCCAAGTGGTGCTGTTGTGTGTCAAGAAGAGAATACCAGGAAGAGGTAGCTTTATCTGTTAAATATGAAGTGATTTACTTATTTAAAAATGTGAGGCAGGAATAATTACGGTCTTTGAAAATATGATTTTGATTCTATGTAATCCAGTGTTGTCAAATTTCTGCCATGGTGTTATAGCATAGAGGATTTTATACTAGCCGCCGTGGGGCCACAACACCTATCATTATCTGTTTGCGCATTGGCCGCAACACCATGTTTGTATGGCAGATTTTTGGCTGGCTTCCATATTCCACCATTTGCCATCGATAACACTGATGTAATCTATTTGTTTATAAGATCTATAATTACGTTAAGTATCAAGACAATATAAATTTCAAATCACACATGATGATATTAGATGAGTCTGGTAGTTACCTTATTATATCCGCTAGTTGCAGATTATTCCTAATAATCGGGTTGATTACCTTTTTTTATGATGGTCTAATGTTGCAATCATTTGAATCATTTACGTGTTTAGATTTTTTGATAAATTTCCTTCTGAATTATTTGTAGGGGACGCACTGAATCATGCTACAAGTCAGGAACAAAAGCCTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGCATGTGTGCTTCCATATATTAAACTTATGGTTGATGTTAAAATTAGTCGTTTAGAAACTGCTTTTCTTAGCTTTTCCTGTGGCTGTTATAGCTTTTTCTGGGCATCAATTTTCTAGCTATGTATAAGGAATGTATACTCTTCCCATGATTTCCAGTTTCTTGTTGCTTCACAAGTTTAGTTCACGTTTTATACACTTGTATTTTACACTTGAGTTTGTTGCATCTGTTTGATACTATGCTGTATGAAATTTATGAATCTGCCCTTGAAGATACTTGTTAGGCATCGGAAGCCACTGATTCCAAGTATTTTTATCTCCCTGAAAGGATGTGAATGATGTTTTCAATACTAGCTTTCATAAATTACCAATTGTATCATTTATATGATGATAGATTTCTGTTTTTATGTCATTAATGATTGTAGTTCTAAGATATTCTGAGACACCTAGGCATGATAGATATGTGTACATGTGTACCATTACCAAACACCTTTTCAATGTTTTGTATTGTGTTTTGCTACTTCATATACTTCATTGTGATTGTTCGCTGCAGATTTTGTGATTTGAGTGCTGTTTTAGAACCCGGGAGACCTGTGAGAACAGATAAACCGGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAGCTTAAAACTGAAGCTCAGGAACTCAAAGAATCAAATGAAAAATTATTAGAGGAAATAAAATCTTTAAAGGTTAGTATTTTTTCAACTACTGATGATAGTAACGACTATTGTATATTTCATTTCTCTTTTTTGCTCTGAAATGTTCGCTTCTTTAGCTACCTCGTTCATGAAATCTCCCTTTATGTTATGGGAAAAGAAATTGACTTTTATTTAGTGTAACTGCTAAAATATTTATCTTCAAGTGAATTTTCTGTGTTATCTCTTTCCAGCTCTTGTTCATTAGGAAGGCTGGTGTTAAGCTTTTTTTCCCATTCAATGCTCAATTCATTCATACGGCCGAAGTTAGTCGGTTTACAGAGTCCTTAGTGGTGAAATGATATGGTTTGAGATCCATACAGTTGATGTAGGAACTAGGAATACACACCTATAAAGCATTAACTTAGGTGGTTCATTCCCATTTGGAGAAAAATGTAGTGAATAGTGATTAGTTGTTTGCAAATTAAGTTAGTGCCTAGTATAAAAAGATAAAAGTTGAAGAGAAAAATATTGATATTGATTGGCATACTGTAAGTTCTACTTTTAATTAAGTTTTATCGACTGTCATGTTAAGTTGTAACTGCATGTGTAAATTTATATTATTTTCTTGGTTCGTCAAATAAAAACACCTAAGGAATTCAAAATCTGAAGATTAGAATTGGAAAATCTATTATTGTATATCTTTTTAAGATCTGCCAAAAAGTATAGAAACACTATTAATTTAGATGGATTAAGCAAGTGGTGATCCTTAAAATCAATTCAAGGGTAGTTGCGGACACCAGACATGCCTTACATGTGAAGTGTAGGTGCTACATAATCTAATTGCTTCAAATATATTAATGACTAATCACTAATAGCAAGAATACAGGTGTGGACGAGGCAATTTGTGCTTCAAACTGTTATCTTTATACGTTGTCTCTTTATAACTCCTTTACAGACTGCATGTTGGTTCTTTAACTCCTTCTCAAGGAAGGAAAACGTATCAGGCGTTTTGTATGAATAATGAATTAGATACATACATCAACAGGGACATTGCAATCAATGCTTGAGTGTTAGTCCAAGATTTTATAACATTTTTCTTATCCATGCAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAGAAGATTGAGAAGCAATTGAAAACTATGCCTATTTCACCTGCAGGTTTTATGCCTCCTCCTCCTCCAATGGCTGCTTATCAAGCACCAGTGAACAAAATGGCTGTTTATCCAAACTACGGATATATCCCAATGTGGCATTATCTTCCTCAATCAGCTCGCGATACGTCCCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAA
Protein sequence

>MS.gene65507.t1

MADTISFSSEFASVSTEFDISSNVVACQEENTRKSVSAETGIPSGAVVCQEENTRKRGRTESCYKSGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKESNEKLLEEIKSLKAEKNELREEKLVLKADKEKIEKQLKTMPISPAGFMPPPPPMAAYQAPVNKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA