Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053589.t1 | XP_003608406.2 | 97.9 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 9.20E-65 | 256.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053589.t1 | G7JV55 | 97.9 | 141 | 3 | 0 | 1 | 141 | 1 | 141 | 6.6e-65 | 256.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053589 | MS.gene38477 | -0.821108 | 4.81E-53 | -1.69E-46 |
| MS.gene053589 | MS.gene53578 | -0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene053589 | MS.gene66413 | -0.800599 | 1.34E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053589.t1 | MTR_4g093770 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 9.92e-100 | 282 |
| MS.gene053589.t1 | MTR_4g093770 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 1.97e-71 | 210 |
| MS.gene053589.t1 | MTR_2g009710 | 54.167 | 120 | 45 | 3 | 25 | 137 | 47 | 163 | 6.64e-30 | 106 |
| MS.gene053589.t1 | MTR_2g009700 | 51.724 | 87 | 34 | 1 | 50 | 128 | 2 | 88 | 2.55e-19 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053589.t1 | AT5G09570 | 57.639 | 144 | 49 | 3 | 1 | 139 | 1 | 137 | 7.04e-53 | 164 |
| MS.gene053589.t1 | AT5G64400 | 72.043 | 93 | 24 | 1 | 47 | 139 | 52 | 142 | 3.66e-38 | 127 |
| MS.gene053589.t1 | AT5G64400 | 72.857 | 70 | 17 | 1 | 40 | 109 | 1 | 68 | 1.19e-22 | 86.7 |
| MS.gene053589.t1 | AT5G64400 | 71.429 | 63 | 16 | 1 | 47 | 109 | 52 | 112 | 1.86e-17 | 74.3 |
Find 41 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4.4:+21471689 | MS.gene053589:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4.4:+21471812 | MS.gene053589:CDS |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4.4:-21472724 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4.4:+21471733 | MS.gene053589:CDS |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4.4:+21470618 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4.4:-21471765 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4.4:+21471721 | MS.gene053589:CDS |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.490974 | 4.4:-21471342 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.492818 | 4.4:-21471539 | None:intergenic |
| GGTGGCGGTGGTATGCTTAG+TGG | 0.507058 | 4.4:+21471557 | MS.gene053589:CDS |
| GGTGGTATGCTTAGTGGCAT+TGG | 0.511137 | 4.4:+21471563 | MS.gene053589:CDS |
| GCTGCACCACGTCCCGCTCC+AGG | 0.515991 | 4.4:+21471354 | MS.gene053589:CDS |
| TATATACCTGGAGCGGGACG+TGG | 0.526451 | 4.4:-21471360 | None:intergenic |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4.4:-21470619 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4.4:-21471809 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4.4:-21471533 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4.4:-21471738 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4.4:+21471841 | MS.gene053589:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4.4:+21471734 | MS.gene053589:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4.4:+21471715 | MS.gene053589:CDS |
| GCGGGACGTGGTGCAGCACG+TGG | 0.568159 | 4.4:-21471348 | None:intergenic |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4.4:-21470629 | None:intergenic |
| AATCCTCAGAGTGGTGGCGG+TGG | 0.573765 | 4.4:+21471545 | MS.gene053589:CDS |
| CATTAATATATACCTGGAGC+GGG | 0.574428 | 4.4:-21471366 | None:intergenic |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4.4:+21471772 | MS.gene053589:CDS |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.583108 | 4.4:+21471542 | MS.gene053589:CDS |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4.4:+21471581 | MS.gene053589:CDS |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4.4:+21471714 | MS.gene053589:CDS |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4.4:-21471591 | None:intergenic |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4.4:+21470621 | MS.gene053589:CDS |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4.4:-21472697 | None:intergenic |
| ACATTAATATATACCTGGAG+CGG | 0.621609 | 4.4:-21471367 | None:intergenic |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4.4:+21471539 | MS.gene053589:CDS |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4.4:-21471815 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4.4:+21472683 | MS.gene053589:intron |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4.4:-21472771 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4.4:-21471536 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4.4:+21471536 | MS.gene053589:CDS |
| ATACCACCGCCACCACTCTG+AGG | 0.688047 | 4.4:-21471548 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+CGG | 0.689214 | 4.4:-21471526 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4.4:-21471758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTGTAACGATAAT+AGG | - | chr4.4:21470692-21470711 | None:intergenic | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | + | chr4.4:21471923-21471942 | MS.gene053589:intron | 15.0% |
| !! | ATTCAATCTAAGTATAAATT+AGG | - | chr4.4:21470983-21471002 | None:intergenic | 15.0% |
| !! | TTCAATCTAAGTATAAATTA+GGG | - | chr4.4:21470982-21471001 | None:intergenic | 15.0% |
| !!! | ACAGCAATTTAAAATAAAAA+AGG | - | chr4.4:21470920-21470939 | None:intergenic | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | + | chr4.4:21470923-21470942 | MS.gene053589:intron | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | + | chr4.4:21470922-21470941 | MS.gene053589:intron | 15.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | + | chr4.4:21470787-21470806 | MS.gene053589:intron | 15.0% |
| !! | AAATACAACATAAAACTGAA+AGG | - | chr4.4:21470716-21470735 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+TGG | - | chr4.4:21471250-21471269 | None:intergenic | 20.0% |
| !! | AATACAACATAAAACTGAAA+GGG | - | chr4.4:21470715-21470734 | None:intergenic | 20.0% |
| !! | AATTGTGTTTGTATTCATAT+TGG | + | chr4.4:21472452-21472471 | MS.gene053589:intron | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | - | chr4.4:21472413-21472432 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | - | chr4.4:21471375-21471394 | None:intergenic | 20.0% |
| !! | GTTATAGTTTATTAGGTTAT+TGG | + | chr4.4:21471101-21471120 | MS.gene053589:intron | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | + | chr4.4:21471673-21471692 | MS.gene053589:intron | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | + | chr4.4:21471455-21471474 | MS.gene053589:intron | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | - | chr4.4:21471915-21471934 | None:intergenic | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | + | chr4.4:21471648-21471667 | MS.gene053589:intron | 20.0% |
| ! | AAAATTTCTCAATGACAAGA+AGG | - | chr4.4:21472618-21472637 | None:intergenic | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | + | chr4.4:21471677-21471696 | MS.gene053589:intron | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | - | chr4.4:21470846-21470865 | None:intergenic | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | + | chr4.4:21471454-21471473 | MS.gene053589:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | + | chr4.4:21471077-21471096 | MS.gene053589:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | - | chr4.4:21472299-21472318 | None:intergenic | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | + | chr4.4:21471030-21471049 | MS.gene053589:intron | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | - | chr4.4:21471454-21471473 | None:intergenic | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | + | chr4.4:21471165-21471184 | MS.gene053589:intron | 25.0% |
| !!! | CTGTTTCTTTTCTTTTTGTA+AGG | + | chr4.4:21472384-21472403 | MS.gene053589:intron | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | + | chr4.4:21471653-21471672 | MS.gene053589:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | + | chr4.4:21472001-21472020 | MS.gene053589:intron | 25.0% |
| !!! | TCAGATCTGCTTTATTATTT+TGG | + | chr4.4:21470657-21470676 | MS.gene053589:intron | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | + | chr4.4:21472041-21472060 | MS.gene053589:intron | 25.0% |
| AAACCTGCAAATACTATAAC+AGG | + | chr4.4:21472201-21472220 | MS.gene053589:intron | 30.0% | |
| AAAGAAAACCCTAGAAAAGA+TGG | - | chr4.4:21470746-21470765 | None:intergenic | 30.0% | |
| ACACGAAGAAAGAAAACAAT+AGG | - | chr4.4:21471306-21471325 | None:intergenic | 30.0% | |
| ACATTAATATATACCTGGAG+CGG | - | chr4.4:21471370-21471389 | None:intergenic | 30.0% | |
| ATTCATAACTTCCCATAATC+GGG | - | chr4.4:21470880-21470899 | None:intergenic | 30.0% | |
| ATTTCAATTTATGGCAGGTA+TGG | + | chr4.4:21471682-21471701 | MS.gene053589:intron | 30.0% | |
| CACGAAGAAAGAAAACAATA+GGG | - | chr4.4:21471305-21471324 | None:intergenic | 30.0% | |
| GATTCATAACTTCCCATAAT+CGG | - | chr4.4:21470881-21470900 | None:intergenic | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | - | chr4.4:21472158-21472177 | None:intergenic | 30.0% | |
| TAGGAAAACAACATACATCT+TGG | - | chr4.4:21471871-21471890 | None:intergenic | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | + | chr4.4:21471841-21471860 | MS.gene053589:CDS | 30.0% | |
| TTATTGCTTGAAATTCCTGT+TGG | + | chr4.4:21471897-21471916 | MS.gene053589:intron | 30.0% | |
| ! | ATTGTTTTCTTTCTTCGTGT+AGG | + | chr4.4:21471306-21471325 | MS.gene053589:intron | 30.0% |
| ! | TCATTTAAGATCATAGCAGT+TGG | - | chr4.4:21472268-21472287 | None:intergenic | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | - | chr4.4:21471278-21471297 | None:intergenic | 30.0% |
| !! | CTCTGGAGTTATAGTTTATT+AGG | + | chr4.4:21471094-21471113 | MS.gene053589:intron | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | + | chr4.4:21471169-21471188 | MS.gene053589:intron | 30.0% |
| !!! | TAAATGTTGCTTTTGCGTAT+TGG | + | chr4.4:21471618-21471637 | MS.gene053589:intron | 30.0% |
| !!! | TGTATGTTGTTTTCCTAGTT+CGG | + | chr4.4:21471874-21471893 | MS.gene053589:intron | 30.0% |
| AACTACTGCTTCATGTTGAA+TGG | - | chr4.4:21471768-21471787 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | + | chr4.4:21471772-21471791 | MS.gene053589:CDS | 35.0% | |
| ATCTCAAGTGAACCAATGAA+TGG | + | chr4.4:21471235-21471254 | MS.gene053589:intron | 35.0% | |
| CATTAATATATACCTGGAGC+GGG | - | chr4.4:21471369-21471388 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | - | chr4.4:21472727-21472746 | None:intergenic | 35.0% | |
| GTTAACAGTCCCAATAACAA+AGG | - | chr4.4:21472524-21472543 | None:intergenic | 35.0% | |
| TTCATAACTTCCCATAATCG+GGG | - | chr4.4:21470879-21470898 | None:intergenic | 35.0% | |
| TTTCAAGCAATAACCGAACT+AGG | - | chr4.4:21471890-21471909 | None:intergenic | 35.0% | |
| ! | TATGACCTTGCCTTTGTTAT+TGG | + | chr4.4:21472511-21472530 | MS.gene053589:intron | 35.0% |
| ! | TTCGCATACCATCTTTTCTA+GGG | + | chr4.4:21470735-21470754 | MS.gene053589:intron | 35.0% |
| ! | TTTCGCATACCATCTTTTCT+AGG | + | chr4.4:21470734-21470753 | MS.gene053589:intron | 35.0% |
| ! | TTTGAGATCATCATAGCTGT+CGG | - | chr4.4:21472124-21472143 | None:intergenic | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | + | chr4.4:21472512-21472531 | MS.gene053589:intron | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | + | chr4.4:21471052-21471071 | MS.gene053589:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | + | chr4.4:21471183-21471202 | MS.gene053589:intron | 35.0% |
| !! | GTTTACTTTTATTCTCTGCC+TGG | + | chr4.4:21471257-21471276 | MS.gene053589:intron | 35.0% |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | + | chr4.4:21470937-21470956 | MS.gene053589:intron | 35.0% |
| !! | TTCATTGGTTCACTTGAGAT+CGG | - | chr4.4:21471235-21471254 | None:intergenic | 35.0% |
| AAACCAACAGACGCTATAAC+AGG | + | chr4.4:21472342-21472361 | MS.gene053589:intron | 40.0% | |
| AAACCGGCAAACACTATAAC+AGG | + | chr4.4:21472057-21472076 | MS.gene053589:intron | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | + | chr4.4:21472219-21472238 | MS.gene053589:intron | 40.0% | |
| CAGCCTGTTATAGTATTTGC+AGG | - | chr4.4:21472207-21472226 | None:intergenic | 40.0% | |
| TGATTCTCTTCCCCGATTAT+GGG | + | chr4.4:21470866-21470885 | MS.gene053589:intron | 40.0% | |
| ! | ATTGGTTCAACCATTGCTCA+AGG | + | chr4.4:21471581-21471600 | MS.gene053589:CDS | 40.0% |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | - | chr4.4:21472750-21472769 | None:intergenic | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | + | chr4.4:21471690-21471709 | MS.gene053589:intron | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | + | chr4.4:21471689-21471708 | MS.gene053589:intron | 40.0% |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | + | chr4.4:21470940-21470959 | MS.gene053589:intron | 40.0% |
| !! | GCTTTCGTGTTTTTCAGCAA+AGG | - | chr4.4:21471413-21471432 | None:intergenic | 40.0% |
| ACAGGCTGCTAACATTGCTA+TGG | + | chr4.4:21472075-21472094 | MS.gene053589:intron | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | - | chr4.4:21472063-21472082 | None:intergenic | 45.0% | |
| CAGTCCCAATAACAAAGGCA+AGG | - | chr4.4:21472519-21472538 | None:intergenic | 45.0% | |
| CTGATTCTCTTCCCCGATTA+TGG | + | chr4.4:21470865-21470884 | MS.gene053589:intron | 45.0% | |
| CTGCCAAAAGAGCTTGAAGT+CGG | - | chr4.4:21471818-21471837 | None:intergenic | 45.0% | |
| GCAGTTGGTTGCATTTCAGA+AGG | - | chr4.4:21472253-21472272 | None:intergenic | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | - | chr4.4:21471594-21471613 | None:intergenic | 45.0% | |
| TGAGATGAGAACGTTACCTC+CGG | - | chr4.4:21470640-21470659 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | + | chr4.4:21472683-21472702 | MS.gene053589:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | + | chr4.4:21472715-21472734 | MS.gene053589:CDS | 45.0% |
| ! | GCTGTCGGTTGTCTTTCAAA+AGG | - | chr4.4:21472109-21472128 | None:intergenic | 45.0% |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | + | chr4.4:21471706-21471725 | MS.gene053589:CDS | 45.0% |
| AAAGAGCTTGAAGTCGGTGC+AGG | - | chr4.4:21471812-21471831 | None:intergenic | 50.0% | |
| CAGCCTGTTATAGCGTCTGT+TGG | - | chr4.4:21472348-21472367 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | + | chr4.4:21472746-21472765 | MS.gene053589:CDS | 50.0% | |
| GCTTCATGTTGAATGGTGCG+AGG | - | chr4.4:21471761-21471780 | None:intergenic | 50.0% | |
| GGTGGTATGCTTAGTGGCAT+TGG | + | chr4.4:21471563-21471582 | MS.gene053589:CDS | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | - | chr4.4:21472700-21472719 | None:intergenic | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | + | chr4.4:21471715-21471734 | MS.gene053589:CDS | 50.0% |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | + | chr4.4:21471812-21471831 | MS.gene053589:CDS | 50.0% |
| AGGACCCACAACAGCATCCA+CGG | - | chr4.4:21471741-21471760 | None:intergenic | 55.0% | |
| CCAGCTAATCCTCAGAGTGG+TGG | + | chr4.4:21471539-21471558 | MS.gene053589:CDS | 55.0% | |
| CCTCCAGCTAATCCTCAGAG+TGG | + | chr4.4:21471536-21471555 | MS.gene053589:CDS | 55.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | - | chr4.4:21470632-21470651 | None:intergenic | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | + | chr4.4:21471542-21471561 | MS.gene053589:CDS | 55.0% | |
| TATATACCTGGAGCGGGACG+TGG | - | chr4.4:21471363-21471382 | None:intergenic | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | - | chr4.4:21471542-21471561 | None:intergenic | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | + | chr4.4:21471714-21471733 | MS.gene053589:CDS | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | - | chr4.4:21471539-21471558 | None:intergenic | 55.0% |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | - | chr4.4:21471536-21471555 | None:intergenic | 55.0% |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | + | chr4.4:21471695-21471714 | MS.gene053589:intron | 55.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | + | chr4.4:21471734-21471753 | MS.gene053589:CDS | 60.0% | |
| ATACCACCGCCACCACTCTG+AGG | - | chr4.4:21471551-21471570 | None:intergenic | 60.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+CGG | - | chr4.4:21471529-21471548 | None:intergenic | 60.0% |
| ! | GGTGGCGGTGGTATGCTTAG+TGG | + | chr4.4:21471557-21471576 | MS.gene053589:CDS | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+TGG | + | chr4.4:21471545-21471564 | MS.gene053589:CDS | 60.0% |
| CAGGGCCGTGGATGCTGTTG+TGG | + | chr4.4:21471733-21471752 | MS.gene053589:CDS | 65.0% | |
| TGCAATGGCACACAGGGCCG+TGG | + | chr4.4:21471721-21471740 | MS.gene053589:CDS | 65.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | + | chr4.4:21470621-21470640 | MS.gene053589:CDS | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | - | chr4.4:21471345-21471364 | None:intergenic | 70.0% | |
| GCGGGACGTGGTGCAGCACG+TGG | - | chr4.4:21471351-21471370 | None:intergenic | 75.0% | |
| GCTGCACCACGTCCCGCTCC+AGG | + | chr4.4:21471354-21471373 | MS.gene053589:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21470621 | 21472787 | 21470621 | ID=MS.gene053589 |
| chr4.4 | mRNA | 21470621 | 21472787 | 21470621 | ID=MS.gene053589.t1;Parent=MS.gene053589 |
| chr4.4 | exon | 21470621 | 21470642 | 21470621 | ID=MS.gene053589.t1.exon1;Parent=MS.gene053589.t1 |
| chr4.4 | CDS | 21470621 | 21470642 | 21470621 | ID=cds.MS.gene053589.t1;Parent=MS.gene053589.t1 |
| chr4.4 | exon | 21471328 | 21471375 | 21471328 | ID=MS.gene053589.t1.exon2;Parent=MS.gene053589.t1 |
| chr4.4 | CDS | 21471328 | 21471375 | 21471328 | ID=cds.MS.gene053589.t1;Parent=MS.gene053589.t1 |
| chr4.4 | exon | 21471522 | 21471602 | 21471522 | ID=MS.gene053589.t1.exon3;Parent=MS.gene053589.t1 |
| chr4.4 | CDS | 21471522 | 21471602 | 21471522 | ID=cds.MS.gene053589.t1;Parent=MS.gene053589.t1 |
| chr4.4 | exon | 21471699 | 21471874 | 21471699 | ID=MS.gene053589.t1.exon4;Parent=MS.gene053589.t1 |
| chr4.4 | CDS | 21471699 | 21471874 | 21471699 | ID=cds.MS.gene053589.t1;Parent=MS.gene053589.t1 |
| chr4.4 | exon | 21472689 | 21472787 | 21472689 | ID=MS.gene053589.t1.exon5;Parent=MS.gene053589.t1 |
| chr4.4 | CDS | 21472689 | 21472787 | 21472689 | ID=cds.MS.gene053589.t1;Parent=MS.gene053589.t1 |
| Gene Sequence |
| Protein sequence |
