AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053637


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053637.t1 MTR_4g092590 97.479 357 9 0 1 357 1 357 0.0 716
MS.gene053637.t1 MTR_3g103580 60.057 348 134 3 12 357 43 387 1.07e-156 445
MS.gene053637.t1 MTR_5g014960 59.659 352 137 3 7 356 59 407 3.00e-151 432
MS.gene053637.t1 MTR_3g103580 61.420 324 121 2 36 357 2 323 5.19e-151 428
MS.gene053637.t1 MTR_4g092580 54.318 359 160 2 1 357 1 357 1.02e-144 414
MS.gene053637.t1 MTR_3g103580 61.093 311 116 3 12 320 43 350 1.00e-141 405
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053637.t1 AT1G50110 62.674 359 125 5 1 357 1 352 3.58e-166 468
MS.gene053637.t1 AT1G50090 60.845 355 136 2 4 357 3 355 1.26e-162 459
MS.gene053637.t1 AT1G10070 58.989 356 141 3 5 357 35 388 5.52e-160 454
MS.gene053637.t1 AT1G10070 58.989 356 141 3 5 357 35 388 5.52e-160 454
MS.gene053637.t1 AT1G10060 59.104 357 141 3 2 356 30 383 6.41e-155 441
MS.gene053637.t1 AT1G50110 63.950 319 112 2 40 357 1 317 6.52e-155 438
MS.gene053637.t1 AT1G10060 59.384 357 140 3 2 356 126 479 1.98e-153 440
MS.gene053637.t1 AT5G65780 59.259 351 137 4 9 356 67 414 4.91e-151 432
MS.gene053637.t1 AT1G10070 61.250 320 120 2 40 357 1 318 1.95e-150 427
MS.gene053637.t1 AT3G49680 59.770 348 134 4 14 357 66 411 1.41e-149 428
MS.gene053637.t1 AT3G49680 58.774 359 140 5 5 357 57 413 1.66e-149 428
MS.gene053637.t1 AT3G19710 55.752 339 147 2 20 357 15 351 1.37e-146 418
MS.gene053637.t1 AT1G10060 61.755 319 118 2 40 356 1 317 2.97e-144 411
MS.gene053637.t1 AT1G10060 59.627 322 125 3 2 321 30 348 2.80e-138 398
MS.gene053637.t1 AT1G10060 59.938 322 124 3 2 321 126 444 7.01e-137 398
MS.gene053637.t1 AT1G10060 58.148 270 108 3 2 269 30 296 4.74e-112 329
MS.gene053637.t1 AT1G10060 58.148 270 108 3 2 269 126 392 9.88e-111 329

Find 95 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCATTGATTTGGGTTATA+AGG 0.149101 4.4:-21780791 MS.gene053637:intron
AATACATACCCAACGTTTAT+TGG 0.212789 4.4:+21782010 None:intergenic
CATAGACATCGCCATTGATT+TGG 0.259021 4.4:-21780800 MS.gene053637:CDS
TGTTGCATCTGTAACATATA+AGG 0.310394 4.4:-21780569 MS.gene053637:CDS
AAAATTATGCTGACATCAAT+TGG 0.313617 4.4:-21782830 MS.gene053637:CDS
CATCATTTCCTCCACTGATA+TGG 0.317405 4.4:+21780639 None:intergenic
GGAAAGGGACGCTTTATCTT+AGG 0.336223 4.4:-21781687 MS.gene053637:CDS
ATCTTCACTCCGGCAATAGA+TGG 0.342656 4.4:-21780856 MS.gene053637:CDS
TATCTTAGGCCTTTGCTGAT+AGG 0.349392 4.4:-21781673 MS.gene053637:CDS
TTGTTCTTGGATTCAGCAAC+TGG 0.355547 4.4:-21781069 MS.gene053637:CDS
ATAGACATCGCCATTGATTT+GGG 0.368721 4.4:-21780799 MS.gene053637:CDS
TCATTGTCCCTTAAAATAGA+AGG 0.385095 4.4:+21783002 None:intergenic
ACCTCGTGGTAATTTCCAAC+AGG 0.408370 4.4:+21781589 None:intergenic
GCTGCTGGTATCATAAACTA+TGG 0.421561 4.4:-21782690 MS.gene053637:CDS
TATTTATAGGGAATCTTTGA+GGG 0.423848 4.4:-21782182 MS.gene053637:intron
AGGCCTTTGCTGATAGGAAC+AGG 0.426821 4.4:-21781667 MS.gene053637:CDS
TGCCAATTTCTCAATCTACT+TGG 0.427171 4.4:+21780293 None:intergenic
ATACTGGTTGGAATACAAAC+AGG 0.434484 4.4:-21780346 MS.gene053637:CDS
TTATTTATAGGGAATCTTTG+AGG 0.451052 4.4:-21782183 MS.gene053637:intron
CATGTTATGAAATGCACAAA+AGG 0.460504 4.4:-21782768 MS.gene053637:CDS
ATAGCTGGCAGTGGTGGAAC+AGG 0.460699 4.4:-21781398 MS.gene053637:CDS
CAATGTTTCCATAGCGAATG+AGG 0.461717 4.4:+21782724 None:intergenic
TCTCCTCTGGTCGGAAAAGA+AGG 0.461828 4.4:+21782126 None:intergenic
AGAATAGATCCATCTATTGC+CGG 0.463647 4.4:+21780847 None:intergenic
CTCATTTATTGCTCCCCTGT+TGG 0.463936 4.4:-21781604 MS.gene053637:CDS
TTGAAACAGGTACCTCCTCC+AGG 0.466899 4.4:-21781709 MS.gene053637:intron
AAGAAGGATTCGCCCATCTT+CGG 0.471480 4.4:+21782142 None:intergenic
AGTTCTTGCCAATAAACGTT+GGG 0.472787 4.4:-21782018 MS.gene053637:intron
TGCAGAGCTGAATATAAAAC+AGG 0.474986 4.4:-21780400 MS.gene053637:intron
GAATGCTCTACGCATGAAGA+TGG 0.475110 4.4:-21782105 MS.gene053637:CDS
ATCAATGGCGATGTCTATGA+TGG 0.477143 4.4:+21780804 None:intergenic
ATAACATGCATGTAATCTGT+TGG 0.487849 4.4:+21782783 None:intergenic
AGATAAAGCGTCCCTTTCCC+TGG 0.488127 4.4:+21781691 None:intergenic
AAAGCATATAGAACCGAAGA+TGG 0.494591 4.4:-21782155 MS.gene053637:CDS
ATAGATGGATCTATTCTGCC+TGG 0.500850 4.4:-21780841 MS.gene053637:CDS
TACCTTATAACCCAAATCAA+TGG 0.507754 4.4:+21780789 None:intergenic
ATAGGAACAGGAGCTGCATT+AGG 0.514522 4.4:-21781655 MS.gene053637:CDS
AATGCTCTACGCATGAAGAT+GGG 0.515215 4.4:-21782104 MS.gene053637:CDS
AACAGGAGCTGCATTAGGCT+TGG 0.520575 4.4:-21781650 MS.gene053637:CDS
ATGCGTAGAGCATTCTCCTC+TGG 0.524923 4.4:+21782113 None:intergenic
TAGATGGATCTATTCTGCCT+GGG 0.527089 4.4:-21780840 MS.gene053637:CDS
AAATTATGCTGACATCAATT+GGG 0.528575 4.4:-21782829 MS.gene053637:CDS
CGATCAATAGCTGGCAGTGG+TGG 0.529542 4.4:-21781404 MS.gene053637:CDS
AGGTACCTCCTCCAGGGAAA+GGG 0.530899 4.4:-21781702 MS.gene053637:CDS
AAACTACGAGGAATACTGGT+TGG 0.534155 4.4:-21780358 MS.gene053637:CDS
CAGGTACCTCCTCCAGGGAA+AGG 0.544439 4.4:-21781703 MS.gene053637:CDS
CAAGGATCCCTCATTCGCTA+TGG 0.546856 4.4:-21782732 MS.gene053637:CDS
AAATTTCATCGATCAATAGC+TGG 0.549508 4.4:-21781413 MS.gene053637:CDS
AGGAAGACTAAACTTAAAAG+TGG 0.553988 4.4:-21781441 MS.gene053637:CDS
TAGTTTATGATACCAGCAGC+CGG 0.554250 4.4:+21782693 None:intergenic
AGCGTCCCTTTCCCTGGAGG+AGG 0.558749 4.4:+21781697 None:intergenic
ATTGAGATAAGCCCGGCTGC+TGG 0.560098 4.4:-21782705 MS.gene053637:CDS
TCAACAAACTGCTCAACTGA+TGG 0.571107 4.4:+21782056 None:intergenic
CTGTAACATATAAGGAAACA+AGG 0.572784 4.4:-21780561 MS.gene053637:intron
CAAGACATCAGAAAATCCAT+TGG 0.572958 4.4:+21781089 None:intergenic
TGGTATCATAAACTATGGAC+AGG 0.579973 4.4:-21782685 MS.gene053637:intron
TAAATGAGAAATGTGTACTC+AGG 0.581598 4.4:+21781619 None:intergenic
GTAACTGAAGCAAAAGCCAA+TGG 0.582493 4.4:-21781105 MS.gene053637:CDS
ATGCTCTACGCATGAAGATG+GGG 0.583009 4.4:-21782103 MS.gene053637:CDS
ATGCTGACATCAATTGGGAA+GGG 0.585048 4.4:-21782824 MS.gene053637:CDS
AGTTTATGATACCAGCAGCC+GGG 0.586157 4.4:+21782694 None:intergenic
TGGAAACATTGAGATAAGCC+CGG 0.589471 4.4:-21782712 MS.gene053637:CDS
TATGCTGACATCAATTGGGA+AGG 0.594489 4.4:-21782825 MS.gene053637:CDS
GGAAAATGATATCTTCACTC+CGG 0.596052 4.4:-21780866 MS.gene053637:CDS
AATACAAACAGGGCGTATTG+AGG 0.599236 4.4:-21780335 MS.gene053637:CDS
AGCAACTGGAAACAATATTG+AGG 0.599305 4.4:-21781055 MS.gene053637:CDS
GCTGGCAGTGGTGGAACAGG+AGG 0.602903 4.4:-21781395 MS.gene053637:CDS
AAGCATATAGAACCGAAGAT+GGG 0.603146 4.4:-21782154 MS.gene053637:CDS
CATCGATCAATAGCTGGCAG+TGG 0.604641 4.4:-21781407 MS.gene053637:CDS
GTGCAATATATTTGTTGTGA+AGG 0.605535 4.4:-21781022 MS.gene053637:intron
CATAGAACGTTCCATATCAG+TGG 0.605813 4.4:-21780650 MS.gene053637:CDS
AGAAATGTGTACTCAGGTGA+TGG 0.612357 4.4:+21781625 None:intergenic
GCTGATGAAGTGTTCTGCAC+AGG 0.613446 4.4:-21780613 MS.gene053637:CDS
TAAAATAGAAGGAGGAGCCA+TGG 0.616010 4.4:+21783013 None:intergenic
CAGTTCTTGCCAATAAACGT+TGG 0.616405 4.4:-21782019 MS.gene053637:CDS
AACTGCTCAACTGATGGTGA+TGG 0.617477 4.4:+21782062 None:intergenic
GCTCCTGTTCCTATCAGCAA+AGG 0.618333 4.4:+21781664 None:intergenic
AATGTTTCCATAGCGAATGA+GGG 0.619575 4.4:+21782725 None:intergenic
AAGACTAAACTTAAAAGTGG+AGG 0.620669 4.4:-21781438 MS.gene053637:CDS
GAGTGTTACTAATTATGCCC+CGG 0.621088 4.4:-21781366 MS.gene053637:intron
TGCTCTACGCATGAAGATGG+GGG 0.622391 4.4:-21782102 MS.gene053637:CDS
TTGTCCCTTAAAATAGAAGG+AGG 0.626550 4.4:+21783005 None:intergenic
CCTCGTGGTAATTTCCAACA+GGG 0.633692 4.4:+21781590 None:intergenic
TGAAACAGGTACCTCCTCCA+GGG 0.635669 4.4:-21781708 MS.gene053637:intron
AGAACGTTCCATATCAGTGG+AGG 0.645297 4.4:-21780647 MS.gene053637:CDS
ACAATGAAGATGGTTCTGAA+AGG 0.645439 4.4:-21782986 MS.gene053637:intron
AACTGGAAACAATATTGAGG+AGG 0.649999 4.4:-21781052 MS.gene053637:CDS
GTAGAGCATTCTCCTCTGGT+CGG 0.659032 4.4:+21782117 None:intergenic
AGATGGATCTATTCTGCCTG+GGG 0.660994 4.4:-21780839 MS.gene053637:CDS
TAAAGCGTCCCTTTCCCTGG+AGG 0.677703 4.4:+21781694 None:intergenic
ATATGTTACAGATGCAACAG+AGG 0.681902 4.4:+21780573 None:intergenic
TACTGGTTGGAATACAAACA+GGG 0.699480 4.4:-21780345 MS.gene053637:CDS
CTCGTGGTAATTTCCAACAG+GGG 0.700556 4.4:+21781591 None:intergenic
CCCTGTTGGAAATTACCACG+AGG 0.728651 4.4:-21781590 MS.gene053637:intron
GTTCTGCACAGGAACTGCAG+TGG 0.751564 4.4:-21780602 MS.gene053637:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAAATATATAATAATT+TGG + chr4.4:21782035-21782054 None:intergenic 10.0%
!!! AAATTATTATATATTTTCCT+TGG - chr4.4:21782034-21782053 MS.gene053637:CDS 10.0%
!! AAAAAATTGACTAAAATGAA+AGG + chr4.4:21782835-21782854 None:intergenic 15.0%
!! AAAAATTGACTAAAATGAAA+GGG + chr4.4:21782834-21782853 None:intergenic 15.0%
!! ATAATACTATAAAGTAAACT+TGG - chr4.4:21780968-21780987 MS.gene053637:intron 15.0%
!! TAATACTATAAAGTAAACTT+GGG - chr4.4:21780969-21780988 MS.gene053637:intron 15.0%
!! TATAGATGATTAATGATTTA+TGG - chr4.4:21782596-21782615 MS.gene053637:intron 15.0%
!! TGTAAATTTGTAGAAAATAA+TGG + chr4.4:21782575-21782594 None:intergenic 15.0%
!!! AAAATGGTTTCTTTATTTAT+AGG - chr4.4:21781119-21781138 MS.gene053637:CDS 15.0%
!!! AAATGGTTTCTTTATTTATA+GGG - chr4.4:21781120-21781139 MS.gene053637:CDS 15.0%
!!! ATTTTGAATGGTAAATTTAA+TGG + chr4.4:21780363-21780382 None:intergenic 15.0%
!!! CTTATATTGTTTTGTTAATA+AGG - chr4.4:21781768-21781787 MS.gene053637:intron 15.0%
!!! GTAATTTTTTCATACAAAAA+CGG + chr4.4:21780451-21780470 None:intergenic 15.0%
!!! TATTATACAAGAATTTTGAA+TGG + chr4.4:21780375-21780394 None:intergenic 15.0%
!!! TTTTAGTCAATTTTTTTTGT+TGG - chr4.4:21782839-21782858 MS.gene053637:CDS 15.0%
!! AAAAAAAAAAAATAACAGGG+AGG - chr4.4:21781853-21781872 MS.gene053637:intron 20.0%
!! AATACTATAAAGTAAACTTG+GGG - chr4.4:21780970-21780989 MS.gene053637:intron 20.0%
!! ATGAAAAAATTACAGTGATA+TGG - chr4.4:21780458-21780477 MS.gene053637:intron 20.0%
!! TGAAAAAATTACAGTGATAT+GGG - chr4.4:21780459-21780478 MS.gene053637:intron 20.0%
!! TTATATTACAGTCACAATTA+CGG - chr4.4:21780807-21780826 MS.gene053637:CDS 20.0%
!!! AATTTAAAACCATCATACAA+GGG + chr4.4:21780687-21780706 None:intergenic 20.0%
! AAAATTATGCTGACATCAAT+TGG - chr4.4:21780484-21780503 MS.gene053637:intron 25.0%
! AAATTATGCTGACATCAATT+GGG - chr4.4:21780485-21780504 MS.gene053637:intron 25.0%
! ACTATATCCGAAACAAAAAT+TGG - chr4.4:21782392-21782411 MS.gene053637:intron 25.0%
! AGAAAATAATGGCAAACATT+GGG + chr4.4:21782564-21782583 None:intergenic 25.0%
! ATACTATAAAGTAAACTTGG+GGG - chr4.4:21780971-21780990 MS.gene053637:intron 25.0%
! CAATTTAATATCATGACTTC+AGG - chr4.4:21781526-21781545 MS.gene053637:intron 25.0%
! GAAGTCATGATATTAAATTG+CGG + chr4.4:21781526-21781545 None:intergenic 25.0%
! GTTTCGGATATAGTAAAATA+TGG + chr4.4:21782386-21782405 None:intergenic 25.0%
! TAGAAAATAATGGCAAACAT+TGG + chr4.4:21782565-21782584 None:intergenic 25.0%
! TATAAGTAAATCCAAATCCA+TGG + chr4.4:21781754-21781773 None:intergenic 25.0%
! TATTTATAGGGAATCTTTGA+GGG - chr4.4:21781132-21781151 MS.gene053637:intron 25.0%
! TGTCTAAAAATGCACTAAAA+TGG - chr4.4:21781103-21781122 MS.gene053637:CDS 25.0%
! TTATTTATAGGGAATCTTTG+AGG - chr4.4:21781131-21781150 MS.gene053637:intron 25.0%
! TTGTGTTTAGCATTATCATT+AGG + chr4.4:21782879-21782898 None:intergenic 25.0%
! TTTGTAACAAAACTATGTTC+AGG - chr4.4:21782640-21782659 MS.gene053637:intron 25.0%
!! CAATTTAAAACCATCATACA+AGG + chr4.4:21780688-21780707 None:intergenic 25.0%
!! CTGTAATATAACGAATTTTG+AGG + chr4.4:21780798-21780817 None:intergenic 25.0%
!! GTTTTGCATTAATCTTGTTA+AGG - chr4.4:21782427-21782446 MS.gene053637:intron 25.0%
!! TAATGATAATGCTAAACACA+AGG - chr4.4:21782878-21782897 MS.gene053637:intron 25.0%
!!! ACTAACTTTCATGTTTTAAC+AGG + chr4.4:21780891-21780910 None:intergenic 25.0%
!!! CATTAGACCAATTTTTGTTT+CGG + chr4.4:21782402-21782421 None:intergenic 25.0%
!!! GTTACATTGGTTTATATTGT+TGG - chr4.4:21780722-21780741 MS.gene053637:intron 25.0%
!!! TGTATGATGGTTTTAAATTG+AGG - chr4.4:21780688-21780707 MS.gene053637:intron 25.0%
AAATTTCATCGATCAATAGC+TGG - chr4.4:21781901-21781920 MS.gene053637:intron 30.0%
AAGACTAAACTTAAAAGTGG+AGG - chr4.4:21781876-21781895 MS.gene053637:intron 30.0%
AATACATACCCAACGTTTAT+TGG + chr4.4:21781307-21781326 None:intergenic 30.0%
AGGAAGACTAAACTTAAAAG+TGG - chr4.4:21781873-21781892 MS.gene053637:intron 30.0%
ATAACATGCATGTAATCTGT+TGG + chr4.4:21780534-21780553 None:intergenic 30.0%
CATGTTATGAAATGCACAAA+AGG - chr4.4:21780546-21780565 MS.gene053637:intron 30.0%
CTCTTCATTATGCATATTTC+TGG - chr4.4:21782166-21782185 MS.gene053637:CDS 30.0%
CTGTAACATATAAGGAAACA+AGG - chr4.4:21782753-21782772 MS.gene053637:CDS 30.0%
GGAGAAAAAAAACCATCAAA+CGG + chr4.4:21782014-21782033 None:intergenic 30.0%
TAAATGAGAAATGTGTACTC+AGG + chr4.4:21781698-21781717 None:intergenic 30.0%
TACCTTATAACCCAAATCAA+TGG + chr4.4:21782528-21782547 None:intergenic 30.0%
TATTACTATCACTATTGCCA+TGG + chr4.4:21781977-21781996 None:intergenic 30.0%
TCATTGTCCCTTAAAATAGA+AGG + chr4.4:21780315-21780334 None:intergenic 30.0%
TGAGCTTTCAAAATTGAAAC+AGG - chr4.4:21781592-21781611 MS.gene053637:CDS 30.0%
TGTTGCATCTGTAACATATA+AGG - chr4.4:21782745-21782764 MS.gene053637:CDS 30.0%
TTATATACATCACCGTTTGA+TGG - chr4.4:21781999-21782018 MS.gene053637:intron 30.0%
TTGAGAAGAAATCACATCAA+AGG - chr4.4:21782083-21782102 MS.gene053637:CDS 30.0%
! AAAGGAGAAAAGTTTTCACA+AGG - chr4.4:21780564-21780583 MS.gene053637:CDS 30.0%
! ACTGATGCATATTGTTACTT+AGG - chr4.4:21782106-21782125 MS.gene053637:CDS 30.0%
!! ATTTTAAGGGACAATGAAGA+TGG - chr4.4:21780318-21780337 MS.gene053637:CDS 30.0%
!! ATTTTCTGATGTCTTGTTCT+TGG - chr4.4:21782232-21782251 MS.gene053637:intron 30.0%
!! GTGCAATATATTTGTTGTGA+AGG - chr4.4:21782292-21782311 MS.gene053637:intron 30.0%
!! TTAGTGCATTTTTAGACATC+TGG + chr4.4:21781101-21781120 None:intergenic 30.0%
!!! ATGGTTTTAAATTGAGGTTG+CGG - chr4.4:21780694-21780713 MS.gene053637:intron 30.0%
!!! GAATTTTGAGGTCTTTGTAA+CGG + chr4.4:21780786-21780805 None:intergenic 30.0%
AAAGCATATAGAACCGAAGA+TGG - chr4.4:21781159-21781178 MS.gene053637:intron 35.0%
AAATAATGGCAAACATTGGG+AGG + chr4.4:21782561-21782580 None:intergenic 35.0%
AACTGGAAACAATATTGAGG+AGG - chr4.4:21782262-21782281 MS.gene053637:intron 35.0%
AAGCATATAGAACCGAAGAT+GGG - chr4.4:21781160-21781179 MS.gene053637:intron 35.0%
AATAATGGCAAACATTGGGA+GGG + chr4.4:21782560-21782579 None:intergenic 35.0%
AATGTTTCCATAGCGAATGA+GGG + chr4.4:21780592-21780611 None:intergenic 35.0%
AGAATAGATCCATCTATTGC+CGG + chr4.4:21782470-21782489 None:intergenic 35.0%
AGCAACTGGAAACAATATTG+AGG - chr4.4:21782259-21782278 MS.gene053637:intron 35.0%
AGTTCTTGCCAATAAACGTT+GGG - chr4.4:21781296-21781315 MS.gene053637:intron 35.0%
ATATGTTACAGATGCAACAG+AGG + chr4.4:21782744-21782763 None:intergenic 35.0%
ATCGCCAAAAACTTATGTTG+TGG - chr4.4:21781481-21781500 MS.gene053637:intron 35.0%
ATTACAGTCACAATTACGGT+TGG - chr4.4:21780811-21780830 MS.gene053637:CDS 35.0%
CAAGACATCAGAAAATCCAT+TGG + chr4.4:21782228-21782247 None:intergenic 35.0%
CATTGCGATATTTCATATCG+TGG - chr4.4:21781404-21781423 MS.gene053637:CDS 35.0%
GGAAAATGATATCTTCACTC+CGG - chr4.4:21782448-21782467 MS.gene053637:intron 35.0%
GTATTGAGGACAAAAAGTCA+TGG - chr4.4:21782993-21783012 MS.gene053637:CDS 35.0%
GTCAAGTGTAAAGTAGTACA+AGG + chr4.4:21780858-21780877 None:intergenic 35.0%
GTTGAAATACCCTTGTATGA+TGG - chr4.4:21780675-21780694 MS.gene053637:intron 35.0%
GTTTGCTCACATATCAAATC+TGG - chr4.4:21781075-21781094 MS.gene053637:CDS 35.0%
TGAAAAACTACGAGGAATAC+TGG - chr4.4:21782952-21782971 MS.gene053637:intron 35.0%
TGCAGAGCTGAATATAAAAC+AGG - chr4.4:21782914-21782933 MS.gene053637:intron 35.0%
TGGTATCATAAACTATGGAC+AGG - chr4.4:21780629-21780648 MS.gene053637:CDS 35.0%
TTGTCCCTTAAAATAGAAGG+AGG + chr4.4:21780312-21780331 None:intergenic 35.0%
TTTCCTCTTATCTCTCTTTG+TGG - chr4.4:21781325-21781344 MS.gene053637:intron 35.0%
! ATACTGGTTGGAATACAAAC+AGG - chr4.4:21782968-21782987 MS.gene053637:intron 35.0%
! TACTGGTTGGAATACAAACA+GGG - chr4.4:21782969-21782988 MS.gene053637:intron 35.0%
!! ACAATGAAGATGGTTCTGAA+AGG - chr4.4:21780328-21780347 MS.gene053637:CDS 35.0%
!! ATAGACATCGCCATTGATTT+GGG - chr4.4:21782515-21782534 MS.gene053637:intron 35.0%
AAACTACGAGGAATACTGGT+TGG - chr4.4:21782956-21782975 MS.gene053637:intron 40.0%
AATACAAACAGGGCGTATTG+AGG - chr4.4:21782979-21782998 MS.gene053637:intron 40.0%
AATGCTCTACGCATGAAGAT+GGG - chr4.4:21781210-21781229 MS.gene053637:intron 40.0%
ACGTTGTCTGAAAAACTACG+AGG - chr4.4:21782944-21782963 MS.gene053637:intron 40.0%
AGAAATGTGTACTCAGGTGA+TGG + chr4.4:21781692-21781711 None:intergenic 40.0%
AGACCACAAAGAGAGATAAG+AGG + chr4.4:21781331-21781350 None:intergenic 40.0%
AGTCTAATCAGCTTCATGCT+TGG - chr4.4:21781355-21781374 MS.gene053637:intron 40.0%
ATAGATGGATCTATTCTGCC+TGG - chr4.4:21782473-21782492 MS.gene053637:intron 40.0%
ATCAATGGCGATGTCTATGA+TGG + chr4.4:21782513-21782532 None:intergenic 40.0%
ATCACTATTGCCATGGTTAC+CGG + chr4.4:21781970-21781989 None:intergenic 40.0%
ATGCTGACATCAATTGGGAA+GGG - chr4.4:21780490-21780509 MS.gene053637:intron 40.0%
CAATGTTTCCATAGCGAATG+AGG + chr4.4:21780593-21780612 None:intergenic 40.0%
CAGTTCTTGCCAATAAACGT+TGG - chr4.4:21781295-21781314 MS.gene053637:intron 40.0%
CATAGAACGTTCCATATCAG+TGG - chr4.4:21782664-21782683 MS.gene053637:intron 40.0%
CATCATTTCCTCCACTGATA+TGG + chr4.4:21782678-21782697 None:intergenic 40.0%
GACAGATGCAGCTTCAATTT+CGG - chr4.4:21781436-21781455 MS.gene053637:CDS 40.0%
GCTGCTGGTATCATAAACTA+TGG - chr4.4:21780624-21780643 MS.gene053637:CDS 40.0%
GGTTGCGGTTATTGTTACAT+TGG - chr4.4:21780709-21780728 MS.gene053637:intron 40.0%
GTAACTGAAGCAAAAGCCAA+TGG - chr4.4:21782209-21782228 MS.gene053637:intron 40.0%
TAGATGGATCTATTCTGCCT+GGG - chr4.4:21782474-21782493 MS.gene053637:intron 40.0%
TAGTTTATGATACCAGCAGC+CGG + chr4.4:21780624-21780643 None:intergenic 40.0%
TATCTTAGGCCTTTGCTGAT+AGG - chr4.4:21781641-21781660 MS.gene053637:CDS 40.0%
TATGCTGACATCAATTGGGA+AGG - chr4.4:21780489-21780508 MS.gene053637:intron 40.0%
TCAACAAACTGCTCAACTGA+TGG + chr4.4:21781261-21781280 None:intergenic 40.0%
TGGAAACATTGAGATAAGCC+CGG - chr4.4:21780602-21780621 MS.gene053637:CDS 40.0%
TTGTTCTTGGATTCAGCAAC+TGG - chr4.4:21782245-21782264 MS.gene053637:intron 40.0%
! AGGGCCACAACATAAGTTTT+TGG + chr4.4:21781488-21781507 None:intergenic 40.0%
! CATAGACATCGCCATTGATT+TGG - chr4.4:21782514-21782533 MS.gene053637:intron 40.0%
! CTTTTCACAAGTCACAACCA+AGG + chr4.4:21782054-21782073 None:intergenic 40.0%
! GAGTGTTACTAATTATGCCC+CGG - chr4.4:21781948-21781967 MS.gene053637:intron 40.0%
! TGGCTCCTCCTTCTATTTTA+AGG - chr4.4:21780304-21780323 MS.gene053637:CDS 40.0%
!! CGCCATTGATTTGGGTTATA+AGG - chr4.4:21782523-21782542 MS.gene053637:intron 40.0%
!! GGCTCCTCCTTCTATTTTAA+GGG - chr4.4:21780305-21780324 MS.gene053637:CDS 40.0%
AAGAAGGATTCGCCCATCTT+CGG + chr4.4:21781175-21781194 None:intergenic 45.0%
ACCTCGTGGTAATTTCCAAC+AGG + chr4.4:21781728-21781747 None:intergenic 45.0%
AGAACGTTCCATATCAGTGG+AGG - chr4.4:21782667-21782686 MS.gene053637:intron 45.0%
AGATGGATCTATTCTGCCTG+GGG - chr4.4:21782475-21782494 MS.gene053637:intron 45.0%
AGTAAACTTGGGGGATACCA+TGG - chr4.4:21780980-21780999 MS.gene053637:intron 45.0%
AGTTTATGATACCAGCAGCC+GGG + chr4.4:21780623-21780642 None:intergenic 45.0%
ATAGGAACAGGAGCTGCATT+AGG - chr4.4:21781659-21781678 MS.gene053637:CDS 45.0%
ATCTTCACTCCGGCAATAGA+TGG - chr4.4:21782458-21782477 MS.gene053637:intron 45.0%
ATGCTCTACGCATGAAGATG+GGG - chr4.4:21781211-21781230 MS.gene053637:intron 45.0%
CAAACACACCCTATATCCAG+TGG + chr4.4:21781023-21781042 None:intergenic 45.0%
CAAGTTCTCAGTTGTTGCAG+TGG + chr4.4:21780934-21780953 None:intergenic 45.0%
CCTCGTGGTAATTTCCAACA+GGG + chr4.4:21781727-21781746 None:intergenic 45.0%
CTCATTTATTGCTCCCCTGT+TGG - chr4.4:21781710-21781729 MS.gene053637:intron 45.0%
CTCGTGGTAATTTCCAACAG+GGG + chr4.4:21781726-21781745 None:intergenic 45.0%
GAATGCTCTACGCATGAAGA+TGG - chr4.4:21781209-21781228 MS.gene053637:intron 45.0%
GACTGATGCAGTCAAAACTG+CGG - chr4.4:21780752-21780771 MS.gene053637:intron 45.0%
GGAAAGGGACGCTTTATCTT+AGG - chr4.4:21781627-21781646 MS.gene053637:CDS 45.0%
GTAAACTTGGGGGATACCAT+GGG - chr4.4:21780981-21781000 MS.gene053637:intron 45.0%
TAATTATGCCCCGGTAACCA+TGG - chr4.4:21781957-21781976 MS.gene053637:intron 45.0%
TAGATCCGCCACTGGATATA+GGG - chr4.4:21781012-21781031 MS.gene053637:intron 45.0%
TCACTATTGCCATGGTTACC+GGG + chr4.4:21781969-21781988 None:intergenic 45.0%
TTATGTTGTGGCCCTAACAG+TGG - chr4.4:21781493-21781512 MS.gene053637:intron 45.0%
! AACTGCTCAACTGATGGTGA+TGG + chr4.4:21781255-21781274 None:intergenic 45.0%
! AATCCTTCTTTTCCGACCAG+AGG - chr4.4:21781185-21781204 MS.gene053637:intron 45.0%
!!! AGTTTTTGGCGATCTCCACA+AGG + chr4.4:21781474-21781493 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAATAAC+AGG - chr4.4:21781849-21781868 MS.gene053637:intron 5.0%
!! AAAAAAAAAAAAAAATAACA+GGG - chr4.4:21781850-21781869 MS.gene053637:intron 5.0%
!!! TTTTTTTTTAAAAAAAAAGA+AGG + chr4.4:21781837-21781856 None:intergenic 5.0%
AACAGGAGCTGCATTAGGCT+TGG - chr4.4:21781664-21781683 MS.gene053637:CDS 50.0%
AATTACCACGAGGTCAGCCA+TGG - chr4.4:21781734-21781753 MS.gene053637:intron 50.0%
ACACACCCTATATCCAGTGG+CGG + chr4.4:21781020-21781039 None:intergenic 50.0%
AGGCCTTTGCTGATAGGAAC+AGG - chr4.4:21781647-21781666 MS.gene053637:CDS 50.0%
CAAGGATCCCTCATTCGCTA+TGG - chr4.4:21780582-21780601 MS.gene053637:CDS 50.0%
CACTATTGCCATGGTTACCG+GGG + chr4.4:21781968-21781987 None:intergenic 50.0%
CATCGATCAATAGCTGGCAG+TGG - chr4.4:21781907-21781926 MS.gene053637:intron 50.0%
CCCTGTTGGAAATTACCACG+AGG - chr4.4:21781724-21781743 MS.gene053637:intron 50.0%
GCGGTTCAGAACCACTGTTA+GGG + chr4.4:21781507-21781526 None:intergenic 50.0%
GCTCCTGTTCCTATCAGCAA+AGG + chr4.4:21781653-21781672 None:intergenic 50.0%
GTAGATCCGCCACTGGATAT+AGG - chr4.4:21781011-21781030 MS.gene053637:intron 50.0%
TCTCCTCTGGTCGGAAAAGA+AGG + chr4.4:21781191-21781210 None:intergenic 50.0%
TGAAACAGGTACCTCCTCCA+GGG - chr4.4:21781606-21781625 MS.gene053637:CDS 50.0%
TGCGGTTCAGAACCACTGTT+AGG + chr4.4:21781508-21781527 None:intergenic 50.0%
TGCTCTACGCATGAAGATGG+GGG - chr4.4:21781212-21781231 MS.gene053637:intron 50.0%
TTGAAACAGGTACCTCCTCC+AGG - chr4.4:21781605-21781624 MS.gene053637:CDS 50.0%
! AGATAAAGCGTCCCTTTCCC+TGG + chr4.4:21781626-21781645 None:intergenic 50.0%
! ATGCGTAGAGCATTCTCCTC+TGG + chr4.4:21781204-21781223 None:intergenic 50.0%
! ATGGATTTTCGTGTGACCCC+AGG + chr4.4:21782494-21782513 None:intergenic 50.0%
! CGGTTGCGATTTTCACCTTG+TGG - chr4.4:21781456-21781475 MS.gene053637:intron 50.0%
! GCTGATGAAGTGTTCTGCAC+AGG - chr4.4:21782701-21782720 MS.gene053637:CDS 50.0%
! GTAGAGCATTCTCCTCTGGT+CGG + chr4.4:21781200-21781219 None:intergenic 50.0%
!! ATCCAGTGGCGGATCTACTT+GGG + chr4.4:21781009-21781028 None:intergenic 50.0%
!! TATCCAGTGGCGGATCTACT+TGG + chr4.4:21781010-21781029 None:intergenic 50.0%
AGGTACCTCCTCCAGGGAAA+GGG - chr4.4:21781612-21781631 MS.gene053637:CDS 55.0%
ATTGAGATAAGCCCGGCTGC+TGG - chr4.4:21780609-21780628 MS.gene053637:CDS 55.0%
CAAATCCATGGCTGACCTCG+TGG + chr4.4:21781742-21781761 None:intergenic 55.0%
CACGAGGTCAGCCATGGATT+TGG - chr4.4:21781740-21781759 MS.gene053637:intron 55.0%
CGATCAATAGCTGGCAGTGG+TGG - chr4.4:21781910-21781929 MS.gene053637:intron 55.0%
GCATGAAGATGGGGGCTGAT+AGG - chr4.4:21781220-21781239 MS.gene053637:intron 55.0%
GTTCTGCACAGGAACTGCAG+TGG - chr4.4:21782712-21782731 MS.gene053637:CDS 55.0%
! ATAGCTGGCAGTGGTGGAAC+AGG - chr4.4:21781916-21781935 MS.gene053637:intron 55.0%
! TAAAGCGTCCCTTTCCCTGG+AGG + chr4.4:21781623-21781642 None:intergenic 55.0%
!! TCCAGTGGCGGATCTACTTG+GGG + chr4.4:21781008-21781027 None:intergenic 55.0%
CAGGTACCTCCTCCAGGGAA+AGG - chr4.4:21781611-21781630 MS.gene053637:CDS 60.0%
CGGATCTACTTGGGGACCCA+TGG + chr4.4:21781000-21781019 None:intergenic 60.0%
TCCCCAAGTAGATCCGCCAC+TGG - chr4.4:21781004-21781023 MS.gene053637:intron 60.0%
AGCGTCCCTTTCCCTGGAGG+AGG + chr4.4:21781620-21781639 None:intergenic 65.0%
! GCTGGCAGTGGTGGAACAGG+AGG - chr4.4:21781919-21781938 MS.gene053637:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21780303 21783033 21780303 ID=MS.gene053637
chr4.4 mRNA 21780303 21783033 21780303 ID=MS.gene053637.t1;Parent=MS.gene053637
chr4.4 exon 21782987 21783033 21782987 ID=MS.gene053637.t1.exon1;Parent=MS.gene053637.t1
chr4.4 CDS 21782987 21783033 21782987 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21782686 21782863 21782686 ID=MS.gene053637.t1.exon2;Parent=MS.gene053637.t1
chr4.4 CDS 21782686 21782863 21782686 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21782019 21782195 21782019 ID=MS.gene053637.t1.exon3;Parent=MS.gene053637.t1
chr4.4 CDS 21782019 21782195 21782019 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21781591 21781722 21781591 ID=MS.gene053637.t1.exon4;Parent=MS.gene053637.t1
chr4.4 CDS 21781591 21781722 21781591 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21781367 21781465 21781367 ID=MS.gene053637.t1.exon5;Parent=MS.gene053637.t1
chr4.4 CDS 21781367 21781465 21781367 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21781023 21781139 21781023 ID=MS.gene053637.t1.exon6;Parent=MS.gene053637.t1
chr4.4 CDS 21781023 21781139 21781023 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21780792 21780887 21780792 ID=MS.gene053637.t1.exon7;Parent=MS.gene053637.t1
chr4.4 CDS 21780792 21780887 21780792 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21780562 21780674 21780562 ID=MS.gene053637.t1.exon8;Parent=MS.gene053637.t1
chr4.4 CDS 21780562 21780674 21780562 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
chr4.4 exon 21780303 21780417 21780303 ID=MS.gene053637.t1.exon9;Parent=MS.gene053637.t1
chr4.4 CDS 21780303 21780417 21780303 ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1
Gene Sequence

>MS.gene053637

ATGGCTCCTCCTTCTATTTTAAGGGACAATGAAGATGGTTCTGAAAGGTACAATATTCCATTAAATTTACCATTCAAAATTCTTGTATAATATTGTACTTTTGCTTTTACTAGTAAAGAGTATATATTTTAAATTATTTGATCAACCGTTTTTGTATGAAAAAATTACAGTGATATGGGTGAAAATTATGCTGACATCAATTGGGAAGGGCTTAGTTTTAATCTGACTCCAACAGATTACATGCATGTTATGAAATGCACAAAAGGAGAAAAGTTTTCACAAGGATCCCTCATTCGCTATGGAAACATTGAGATAAGCCCGGCTGCTGGTATCATAAACTATGGACAGGTTAAAAGTGCACAATATATGTTTGTTGAAATACCCTTGTATGATGGTTTTAAATTGAGGTTGCGGTTATTGTTACATTGGTTTATATTGTTGGAAAATGTGACTGATGCAGTCAAAACTGCGGTTGTAATACCGTTACAAAGACCTCAAAATTCGTTATATTACAGTCACAATTACGGTTGGTGACTGCAATTTAAAATCATGCCTTGTACTACTTTACACTTGACTTATATGTTTCCTGTTAAAACATGAAAGTTAGTTGTGTTACATCAGTTATTGTCCACTGCAACAACTGAGAACTTGCTGTCTAATTATGCATAATACTATAAAGTAAACTTGGGGGATACCATGGGTCCCCAAGTAGATCCGCCACTGGATATAGGGTGTGTTTGTACGCGCGCGCACACACAAGTGACTTTCTTCTGTTTGCTCACATATCAAATCTGGCCAGATGTCTAAAAATGCACTAAAATGGTTTCTTTATTTATAGGGAATCTTTGAGGGACTAAAAGCATATAGAACCGAAGATGGGCGAATCCTTCTTTTCCGACCAGAGGAGAATGCTCTACGCATGAAGATGGGGGCTGATAGGTTGTGTATGCCATCACCATCAGTTGAGCAGTTTGTTGATGCTGTTAAGCAAACAGTTCTTGCCAATAAACGTTGGGTATGTATTTCCTCTTATCTCTCTTTGTGGTCTTTTCAGTCTAATCAGCTTCATGCTTGGTTTTACGTTGCGATTGTAGTCACGTGCATTGCGATATTTCATATCGTGGAAAATTGCAGACAGATGCAGCTTCAATTTCGGTTGCGATTTTCACCTTGTGGAGATCGCCAAAAACTTATGTTGTGGCCCTAACAGTGGTTCTGAACCGCAATTTAATATCATGACTTCAGGTATATATATGACGATATGCGTACACAATAGATACGAAACTAATTGAGCTTTCAAAATTGAAACAGGTACCTCCTCCAGGGAAAGGGACGCTTTATCTTAGGCCTTTGCTGATAGGAACAGGAGCTGCATTAGGCTTGGCTCCATCACCTGAGTACACATTTCTCATTTATTGCTCCCCTGTTGGAAATTACCACGAGGTCAGCCATGGATTTGGATTTACTTATATTGTTTTGTTAATAAGGAAAAGATTCATCTTACAACTTGTTGAATTTCATATTCATGATTCCTTCTTTTTTTTTAAAAAAAAAAAAAAAAATAACAGGGAGGAAGACTAAACTTAAAAGTGGAGGATAAATTTCATCGATCAATAGCTGGCAGTGGTGGAACAGGAGGAATCAAGAGTGTTACTAATTATGCCCCGGTAACCATGGCAATAGTGATAGTAATATATTATATACATCACCGTTTGATGGTTTTTTTTCTCCAAATTATTATATATTTTCCTTGGTTGTGACTTGTGAAAAGTTGTGAGATTTGAGAAGAAATCACATCAAAGGACTGATGCATATTGTTACTTAGGCTGCTATATCAAATCACAATCATATTATAAGCTTTCGCTCTTCATTATGCATATTTCTGGCTGTGTAGATATATACTGCAGTAACTGAAGCAAAAGCCAATGGATTTTCTGATGTCTTGTTCTTGGATTCAGCAACTGGAAACAATATTGAGGAGGCTACTGCGTGCAATATATTTGTTGTGAAGGTGCATCAGCGATCTTGATTTCATATGCACATATACTACTATAAACAAATTTGATGTTCAAAGTTCAAACCATATTTTACTATATCCGAAACAAAAATTGGTCTAATGTTTGTGTTTTGCATTAATCTTGTTAAGGAAAATGATATCTTCACTCCGGCAATAGATGGATCTATTCTGCCTGGGGTCACACGAAAATCCATCATAGACATCGCCATTGATTTGGGTTATAAGGTATTTATTTTTCCCTCCCAATGTTTGCCATTATTTTCTACAAATTTACAATATAGATGATTAATGATTTATGGTATTAAACTTACAAAAGATTTTTTGTAACAAAACTATGTTCAGGTCATAGAACGTTCCATATCAGTGGAGGAAATGATGAGTGCTGATGAAGTGTTCTGCACAGGAACTGCAGTGGTTGTTACCTCTGTTGCATCTGTAACATATAAGGAAACAAGGTAATTTAACTGCACTTTCAATTAATCACGTTCTCTTGTCTTACATGTTTTGTGTTCCCTTTCATTTTAGTCAATTTTTTTTGTTGGAAATATCTTGTGCACCTAATGATAATGCTAAACACAAGGAAAATATTTGCAATGCAGAGCTGAATATAAAACAGGCGCAGAAACGTTGTCTGAAAAACTACGAGGAATACTGGTTGGAATACAAACAGGGCGTATTGAGGACAAAAAGTCATGGACAGTCCAAGTAGATTGA

Protein sequence

>MS.gene053637.t1

MAPPSILRDNEDGSESDMGENYADINWEGLSFNLTPTDYMHVMKCTKGEKFSQGSLIRYGNIEISPAAGIINYGQGIFEGLKAYRTEDGRILLFRPEENALRMKMGADRLCMPSPSVEQFVDAVKQTVLANKRWVPPPGKGTLYLRPLLIGTGAALGLAPSPEYTFLIYCSPVGNYHEGGRLNLKVEDKFHRSIAGSGGTGGIKSVTNYAPIYTAVTEAKANGFSDVLFLDSATGNNIEEATACNIFVVKENDIFTPAIDGSILPGVTRKSIIDIAIDLGYKVIERSISVEEMMSADEVFCTGTAVVVTSVASVTYKETRAEYKTGAETLSEKLRGILVGIQTGRIEDKKSWTVQVD