Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053637.t1 | AES90515.1 | 97.5 | 357 | 9 | 0 | 1 | 357 | 1 | 357 | 5.20E-197 | 696.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053637.t1 | Q9LPM9 | 63.3 | 343 | 123 | 2 | 16 | 357 | 12 | 352 | 9.7e-128 | 458.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053637.t1 | G7JT01 | 97.5 | 357 | 9 | 0 | 1 | 357 | 1 | 357 | 3.7e-197 | 696.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene21440 | MS.gene053637 | PPI |
MS.gene015287 | MS.gene053637 | PPI |
MS.gene43507 | MS.gene053637 | PPI |
MS.gene053637 | MS.gene09632 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053637.t1 | MTR_4g092590 | 97.479 | 357 | 9 | 0 | 1 | 357 | 1 | 357 | 0.0 | 716 |
MS.gene053637.t1 | MTR_3g103580 | 60.057 | 348 | 134 | 3 | 12 | 357 | 43 | 387 | 1.07e-156 | 445 |
MS.gene053637.t1 | MTR_5g014960 | 59.659 | 352 | 137 | 3 | 7 | 356 | 59 | 407 | 3.00e-151 | 432 |
MS.gene053637.t1 | MTR_3g103580 | 61.420 | 324 | 121 | 2 | 36 | 357 | 2 | 323 | 5.19e-151 | 428 |
MS.gene053637.t1 | MTR_4g092580 | 54.318 | 359 | 160 | 2 | 1 | 357 | 1 | 357 | 1.02e-144 | 414 |
MS.gene053637.t1 | MTR_3g103580 | 61.093 | 311 | 116 | 3 | 12 | 320 | 43 | 350 | 1.00e-141 | 405 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053637.t1 | AT1G50110 | 62.674 | 359 | 125 | 5 | 1 | 357 | 1 | 352 | 3.58e-166 | 468 |
MS.gene053637.t1 | AT1G50090 | 60.845 | 355 | 136 | 2 | 4 | 357 | 3 | 355 | 1.26e-162 | 459 |
MS.gene053637.t1 | AT1G10070 | 58.989 | 356 | 141 | 3 | 5 | 357 | 35 | 388 | 5.52e-160 | 454 |
MS.gene053637.t1 | AT1G10070 | 58.989 | 356 | 141 | 3 | 5 | 357 | 35 | 388 | 5.52e-160 | 454 |
MS.gene053637.t1 | AT1G10060 | 59.104 | 357 | 141 | 3 | 2 | 356 | 30 | 383 | 6.41e-155 | 441 |
MS.gene053637.t1 | AT1G50110 | 63.950 | 319 | 112 | 2 | 40 | 357 | 1 | 317 | 6.52e-155 | 438 |
MS.gene053637.t1 | AT1G10060 | 59.384 | 357 | 140 | 3 | 2 | 356 | 126 | 479 | 1.98e-153 | 440 |
MS.gene053637.t1 | AT5G65780 | 59.259 | 351 | 137 | 4 | 9 | 356 | 67 | 414 | 4.91e-151 | 432 |
MS.gene053637.t1 | AT1G10070 | 61.250 | 320 | 120 | 2 | 40 | 357 | 1 | 318 | 1.95e-150 | 427 |
MS.gene053637.t1 | AT3G49680 | 59.770 | 348 | 134 | 4 | 14 | 357 | 66 | 411 | 1.41e-149 | 428 |
MS.gene053637.t1 | AT3G49680 | 58.774 | 359 | 140 | 5 | 5 | 357 | 57 | 413 | 1.66e-149 | 428 |
MS.gene053637.t1 | AT3G19710 | 55.752 | 339 | 147 | 2 | 20 | 357 | 15 | 351 | 1.37e-146 | 418 |
MS.gene053637.t1 | AT1G10060 | 61.755 | 319 | 118 | 2 | 40 | 356 | 1 | 317 | 2.97e-144 | 411 |
MS.gene053637.t1 | AT1G10060 | 59.627 | 322 | 125 | 3 | 2 | 321 | 30 | 348 | 2.80e-138 | 398 |
MS.gene053637.t1 | AT1G10060 | 59.938 | 322 | 124 | 3 | 2 | 321 | 126 | 444 | 7.01e-137 | 398 |
MS.gene053637.t1 | AT1G10060 | 58.148 | 270 | 108 | 3 | 2 | 269 | 30 | 296 | 4.74e-112 | 329 |
MS.gene053637.t1 | AT1G10060 | 58.148 | 270 | 108 | 3 | 2 | 269 | 126 | 392 | 9.88e-111 | 329 |
Find 95 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCCATTGATTTGGGTTATA+AGG | 0.149101 | 4.4:-21780791 | MS.gene053637:intron |
AATACATACCCAACGTTTAT+TGG | 0.212789 | 4.4:+21782010 | None:intergenic |
CATAGACATCGCCATTGATT+TGG | 0.259021 | 4.4:-21780800 | MS.gene053637:CDS |
TGTTGCATCTGTAACATATA+AGG | 0.310394 | 4.4:-21780569 | MS.gene053637:CDS |
AAAATTATGCTGACATCAAT+TGG | 0.313617 | 4.4:-21782830 | MS.gene053637:CDS |
CATCATTTCCTCCACTGATA+TGG | 0.317405 | 4.4:+21780639 | None:intergenic |
GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4.4:-21781687 | MS.gene053637:CDS |
ATCTTCACTCCGGCAATAGA+TGG | 0.342656 | 4.4:-21780856 | MS.gene053637:CDS |
TATCTTAGGCCTTTGCTGAT+AGG | 0.349392 | 4.4:-21781673 | MS.gene053637:CDS |
TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4.4:-21781069 | MS.gene053637:CDS |
ATAGACATCGCCATTGATTT+GGG | 0.368721 | 4.4:-21780799 | MS.gene053637:CDS |
TCATTGTCCCTTAAAATAGA+AGG | 0.385095 | 4.4:+21783002 | None:intergenic |
ACCTCGTGGTAATTTCCAAC+AGG | 0.408370 | 4.4:+21781589 | None:intergenic |
GCTGCTGGTATCATAAACTA+TGG | 0.421561 | 4.4:-21782690 | MS.gene053637:CDS |
TATTTATAGGGAATCTTTGA+GGG | 0.423848 | 4.4:-21782182 | MS.gene053637:intron |
AGGCCTTTGCTGATAGGAAC+AGG | 0.426821 | 4.4:-21781667 | MS.gene053637:CDS |
TGCCAATTTCTCAATCTACT+TGG | 0.427171 | 4.4:+21780293 | None:intergenic |
ATACTGGTTGGAATACAAAC+AGG | 0.434484 | 4.4:-21780346 | MS.gene053637:CDS |
TTATTTATAGGGAATCTTTG+AGG | 0.451052 | 4.4:-21782183 | MS.gene053637:intron |
CATGTTATGAAATGCACAAA+AGG | 0.460504 | 4.4:-21782768 | MS.gene053637:CDS |
ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4.4:-21781398 | MS.gene053637:CDS |
CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4.4:+21782724 | None:intergenic |
TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4.4:+21782126 | None:intergenic |
AGAATAGATCCATCTATTGC+CGG | 0.463647 | 4.4:+21780847 | None:intergenic |
CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4.4:-21781604 | MS.gene053637:CDS |
TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4.4:-21781709 | MS.gene053637:intron |
AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4.4:+21782142 | None:intergenic |
AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4.4:-21782018 | MS.gene053637:intron |
TGCAGAGCTGAATATAAAAC+AGG | 0.474986 | 4.4:-21780400 | MS.gene053637:intron |
GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4.4:-21782105 | MS.gene053637:CDS |
ATCAATGGCGATGTCTATGA+TGG | 0.477143 | 4.4:+21780804 | None:intergenic |
ATAACATGCATGTAATCTGT+TGG | 0.487849 | 4.4:+21782783 | None:intergenic |
AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4.4:+21781691 | None:intergenic |
AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4.4:-21782155 | MS.gene053637:CDS |
ATAGATGGATCTATTCTGCC+TGG | 0.500850 | 4.4:-21780841 | MS.gene053637:CDS |
TACCTTATAACCCAAATCAA+TGG | 0.507754 | 4.4:+21780789 | None:intergenic |
ATAGGAACAGGAGCTGCATT+AGG | 0.514522 | 4.4:-21781655 | MS.gene053637:CDS |
AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4.4:-21782104 | MS.gene053637:CDS |
AACAGGAGCTGCATTAGGCT+TGG | 0.520575 | 4.4:-21781650 | MS.gene053637:CDS |
ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4.4:+21782113 | None:intergenic |
TAGATGGATCTATTCTGCCT+GGG | 0.527089 | 4.4:-21780840 | MS.gene053637:CDS |
AAATTATGCTGACATCAATT+GGG | 0.528575 | 4.4:-21782829 | MS.gene053637:CDS |
CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4.4:-21781404 | MS.gene053637:CDS |
AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4.4:-21781702 | MS.gene053637:CDS |
AAACTACGAGGAATACTGGT+TGG | 0.534155 | 4.4:-21780358 | MS.gene053637:CDS |
CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4.4:-21781703 | MS.gene053637:CDS |
CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4.4:-21782732 | MS.gene053637:CDS |
AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4.4:-21781413 | MS.gene053637:CDS |
AGGAAGACTAAACTTAAAAG+TGG | 0.553988 | 4.4:-21781441 | MS.gene053637:CDS |
TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4.4:+21782693 | None:intergenic |
AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4.4:+21781697 | None:intergenic |
ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4.4:-21782705 | MS.gene053637:CDS |
TCAACAAACTGCTCAACTGA+TGG | 0.571107 | 4.4:+21782056 | None:intergenic |
CTGTAACATATAAGGAAACA+AGG | 0.572784 | 4.4:-21780561 | MS.gene053637:intron |
CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4.4:+21781089 | None:intergenic |
TGGTATCATAAACTATGGAC+AGG | 0.579973 | 4.4:-21782685 | MS.gene053637:intron |
TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4.4:+21781619 | None:intergenic |
GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4.4:-21781105 | MS.gene053637:CDS |
ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4.4:-21782103 | MS.gene053637:CDS |
ATGCTGACATCAATTGGGAA+GGG | 0.585048 | 4.4:-21782824 | MS.gene053637:CDS |
AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4.4:+21782694 | None:intergenic |
TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4.4:-21782712 | MS.gene053637:CDS |
TATGCTGACATCAATTGGGA+AGG | 0.594489 | 4.4:-21782825 | MS.gene053637:CDS |
GGAAAATGATATCTTCACTC+CGG | 0.596052 | 4.4:-21780866 | MS.gene053637:CDS |
AATACAAACAGGGCGTATTG+AGG | 0.599236 | 4.4:-21780335 | MS.gene053637:CDS |
AGCAACTGGAAACAATATTG+AGG | 0.599305 | 4.4:-21781055 | MS.gene053637:CDS |
GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4.4:-21781395 | MS.gene053637:CDS |
AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4.4:-21782154 | MS.gene053637:CDS |
CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4.4:-21781407 | MS.gene053637:CDS |
GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4.4:-21781022 | MS.gene053637:intron |
CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4.4:-21780650 | MS.gene053637:CDS |
AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4.4:+21781625 | None:intergenic |
GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4.4:-21780613 | MS.gene053637:CDS |
TAAAATAGAAGGAGGAGCCA+TGG | 0.616010 | 4.4:+21783013 | None:intergenic |
CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4.4:-21782019 | MS.gene053637:CDS |
AACTGCTCAACTGATGGTGA+TGG | 0.617477 | 4.4:+21782062 | None:intergenic |
GCTCCTGTTCCTATCAGCAA+AGG | 0.618333 | 4.4:+21781664 | None:intergenic |
AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4.4:+21782725 | None:intergenic |
AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | 4.4:-21781438 | MS.gene053637:CDS |
GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4.4:-21781366 | MS.gene053637:intron |
TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4.4:-21782102 | MS.gene053637:CDS |
TTGTCCCTTAAAATAGAAGG+AGG | 0.626550 | 4.4:+21783005 | None:intergenic |
CCTCGTGGTAATTTCCAACA+GGG | 0.633692 | 4.4:+21781590 | None:intergenic |
TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | 4.4:-21781708 | MS.gene053637:intron |
AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4.4:-21780647 | MS.gene053637:CDS |
ACAATGAAGATGGTTCTGAA+AGG | 0.645439 | 4.4:-21782986 | MS.gene053637:intron |
AACTGGAAACAATATTGAGG+AGG | 0.649999 | 4.4:-21781052 | MS.gene053637:CDS |
GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4.4:+21782117 | None:intergenic |
AGATGGATCTATTCTGCCTG+GGG | 0.660994 | 4.4:-21780839 | MS.gene053637:CDS |
TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4.4:+21781694 | None:intergenic |
ATATGTTACAGATGCAACAG+AGG | 0.681902 | 4.4:+21780573 | None:intergenic |
TACTGGTTGGAATACAAACA+GGG | 0.699480 | 4.4:-21780345 | MS.gene053637:CDS |
CTCGTGGTAATTTCCAACAG+GGG | 0.700556 | 4.4:+21781591 | None:intergenic |
CCCTGTTGGAAATTACCACG+AGG | 0.728651 | 4.4:-21781590 | MS.gene053637:intron |
GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4.4:-21780602 | MS.gene053637:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGGAAAATATATAATAATT+TGG | + | chr4.4:21782035-21782054 | None:intergenic | 10.0% |
!!! | AAATTATTATATATTTTCCT+TGG | - | chr4.4:21782034-21782053 | MS.gene053637:CDS | 10.0% |
!! | AAAAAATTGACTAAAATGAA+AGG | + | chr4.4:21782835-21782854 | None:intergenic | 15.0% |
!! | AAAAATTGACTAAAATGAAA+GGG | + | chr4.4:21782834-21782853 | None:intergenic | 15.0% |
!! | ATAATACTATAAAGTAAACT+TGG | - | chr4.4:21780968-21780987 | MS.gene053637:intron | 15.0% |
!! | TAATACTATAAAGTAAACTT+GGG | - | chr4.4:21780969-21780988 | MS.gene053637:intron | 15.0% |
!! | TATAGATGATTAATGATTTA+TGG | - | chr4.4:21782596-21782615 | MS.gene053637:intron | 15.0% |
!! | TGTAAATTTGTAGAAAATAA+TGG | + | chr4.4:21782575-21782594 | None:intergenic | 15.0% |
!!! | AAAATGGTTTCTTTATTTAT+AGG | - | chr4.4:21781119-21781138 | MS.gene053637:CDS | 15.0% |
!!! | AAATGGTTTCTTTATTTATA+GGG | - | chr4.4:21781120-21781139 | MS.gene053637:CDS | 15.0% |
!!! | ATTTTGAATGGTAAATTTAA+TGG | + | chr4.4:21780363-21780382 | None:intergenic | 15.0% |
!!! | CTTATATTGTTTTGTTAATA+AGG | - | chr4.4:21781768-21781787 | MS.gene053637:intron | 15.0% |
!!! | GTAATTTTTTCATACAAAAA+CGG | + | chr4.4:21780451-21780470 | None:intergenic | 15.0% |
!!! | TATTATACAAGAATTTTGAA+TGG | + | chr4.4:21780375-21780394 | None:intergenic | 15.0% |
!!! | TTTTAGTCAATTTTTTTTGT+TGG | - | chr4.4:21782839-21782858 | MS.gene053637:CDS | 15.0% |
!! | AAAAAAAAAAAATAACAGGG+AGG | - | chr4.4:21781853-21781872 | MS.gene053637:intron | 20.0% |
!! | AATACTATAAAGTAAACTTG+GGG | - | chr4.4:21780970-21780989 | MS.gene053637:intron | 20.0% |
!! | ATGAAAAAATTACAGTGATA+TGG | - | chr4.4:21780458-21780477 | MS.gene053637:intron | 20.0% |
!! | TGAAAAAATTACAGTGATAT+GGG | - | chr4.4:21780459-21780478 | MS.gene053637:intron | 20.0% |
!! | TTATATTACAGTCACAATTA+CGG | - | chr4.4:21780807-21780826 | MS.gene053637:CDS | 20.0% |
!!! | AATTTAAAACCATCATACAA+GGG | + | chr4.4:21780687-21780706 | None:intergenic | 20.0% |
! | AAAATTATGCTGACATCAAT+TGG | - | chr4.4:21780484-21780503 | MS.gene053637:intron | 25.0% |
! | AAATTATGCTGACATCAATT+GGG | - | chr4.4:21780485-21780504 | MS.gene053637:intron | 25.0% |
! | ACTATATCCGAAACAAAAAT+TGG | - | chr4.4:21782392-21782411 | MS.gene053637:intron | 25.0% |
! | AGAAAATAATGGCAAACATT+GGG | + | chr4.4:21782564-21782583 | None:intergenic | 25.0% |
! | ATACTATAAAGTAAACTTGG+GGG | - | chr4.4:21780971-21780990 | MS.gene053637:intron | 25.0% |
! | CAATTTAATATCATGACTTC+AGG | - | chr4.4:21781526-21781545 | MS.gene053637:intron | 25.0% |
! | GAAGTCATGATATTAAATTG+CGG | + | chr4.4:21781526-21781545 | None:intergenic | 25.0% |
! | GTTTCGGATATAGTAAAATA+TGG | + | chr4.4:21782386-21782405 | None:intergenic | 25.0% |
! | TAGAAAATAATGGCAAACAT+TGG | + | chr4.4:21782565-21782584 | None:intergenic | 25.0% |
! | TATAAGTAAATCCAAATCCA+TGG | + | chr4.4:21781754-21781773 | None:intergenic | 25.0% |
! | TATTTATAGGGAATCTTTGA+GGG | - | chr4.4:21781132-21781151 | MS.gene053637:intron | 25.0% |
! | TGTCTAAAAATGCACTAAAA+TGG | - | chr4.4:21781103-21781122 | MS.gene053637:CDS | 25.0% |
! | TTATTTATAGGGAATCTTTG+AGG | - | chr4.4:21781131-21781150 | MS.gene053637:intron | 25.0% |
! | TTGTGTTTAGCATTATCATT+AGG | + | chr4.4:21782879-21782898 | None:intergenic | 25.0% |
! | TTTGTAACAAAACTATGTTC+AGG | - | chr4.4:21782640-21782659 | MS.gene053637:intron | 25.0% |
!! | CAATTTAAAACCATCATACA+AGG | + | chr4.4:21780688-21780707 | None:intergenic | 25.0% |
!! | CTGTAATATAACGAATTTTG+AGG | + | chr4.4:21780798-21780817 | None:intergenic | 25.0% |
!! | GTTTTGCATTAATCTTGTTA+AGG | - | chr4.4:21782427-21782446 | MS.gene053637:intron | 25.0% |
!! | TAATGATAATGCTAAACACA+AGG | - | chr4.4:21782878-21782897 | MS.gene053637:intron | 25.0% |
!!! | ACTAACTTTCATGTTTTAAC+AGG | + | chr4.4:21780891-21780910 | None:intergenic | 25.0% |
!!! | CATTAGACCAATTTTTGTTT+CGG | + | chr4.4:21782402-21782421 | None:intergenic | 25.0% |
!!! | GTTACATTGGTTTATATTGT+TGG | - | chr4.4:21780722-21780741 | MS.gene053637:intron | 25.0% |
!!! | TGTATGATGGTTTTAAATTG+AGG | - | chr4.4:21780688-21780707 | MS.gene053637:intron | 25.0% |
AAATTTCATCGATCAATAGC+TGG | - | chr4.4:21781901-21781920 | MS.gene053637:intron | 30.0% | |
AAGACTAAACTTAAAAGTGG+AGG | - | chr4.4:21781876-21781895 | MS.gene053637:intron | 30.0% | |
AATACATACCCAACGTTTAT+TGG | + | chr4.4:21781307-21781326 | None:intergenic | 30.0% | |
AGGAAGACTAAACTTAAAAG+TGG | - | chr4.4:21781873-21781892 | MS.gene053637:intron | 30.0% | |
ATAACATGCATGTAATCTGT+TGG | + | chr4.4:21780534-21780553 | None:intergenic | 30.0% | |
CATGTTATGAAATGCACAAA+AGG | - | chr4.4:21780546-21780565 | MS.gene053637:intron | 30.0% | |
CTCTTCATTATGCATATTTC+TGG | - | chr4.4:21782166-21782185 | MS.gene053637:CDS | 30.0% | |
CTGTAACATATAAGGAAACA+AGG | - | chr4.4:21782753-21782772 | MS.gene053637:CDS | 30.0% | |
GGAGAAAAAAAACCATCAAA+CGG | + | chr4.4:21782014-21782033 | None:intergenic | 30.0% | |
TAAATGAGAAATGTGTACTC+AGG | + | chr4.4:21781698-21781717 | None:intergenic | 30.0% | |
TACCTTATAACCCAAATCAA+TGG | + | chr4.4:21782528-21782547 | None:intergenic | 30.0% | |
TATTACTATCACTATTGCCA+TGG | + | chr4.4:21781977-21781996 | None:intergenic | 30.0% | |
TCATTGTCCCTTAAAATAGA+AGG | + | chr4.4:21780315-21780334 | None:intergenic | 30.0% | |
TGAGCTTTCAAAATTGAAAC+AGG | - | chr4.4:21781592-21781611 | MS.gene053637:CDS | 30.0% | |
TGTTGCATCTGTAACATATA+AGG | - | chr4.4:21782745-21782764 | MS.gene053637:CDS | 30.0% | |
TTATATACATCACCGTTTGA+TGG | - | chr4.4:21781999-21782018 | MS.gene053637:intron | 30.0% | |
TTGAGAAGAAATCACATCAA+AGG | - | chr4.4:21782083-21782102 | MS.gene053637:CDS | 30.0% | |
! | AAAGGAGAAAAGTTTTCACA+AGG | - | chr4.4:21780564-21780583 | MS.gene053637:CDS | 30.0% |
! | ACTGATGCATATTGTTACTT+AGG | - | chr4.4:21782106-21782125 | MS.gene053637:CDS | 30.0% |
!! | ATTTTAAGGGACAATGAAGA+TGG | - | chr4.4:21780318-21780337 | MS.gene053637:CDS | 30.0% |
!! | ATTTTCTGATGTCTTGTTCT+TGG | - | chr4.4:21782232-21782251 | MS.gene053637:intron | 30.0% |
!! | GTGCAATATATTTGTTGTGA+AGG | - | chr4.4:21782292-21782311 | MS.gene053637:intron | 30.0% |
!! | TTAGTGCATTTTTAGACATC+TGG | + | chr4.4:21781101-21781120 | None:intergenic | 30.0% |
!!! | ATGGTTTTAAATTGAGGTTG+CGG | - | chr4.4:21780694-21780713 | MS.gene053637:intron | 30.0% |
!!! | GAATTTTGAGGTCTTTGTAA+CGG | + | chr4.4:21780786-21780805 | None:intergenic | 30.0% |
AAAGCATATAGAACCGAAGA+TGG | - | chr4.4:21781159-21781178 | MS.gene053637:intron | 35.0% | |
AAATAATGGCAAACATTGGG+AGG | + | chr4.4:21782561-21782580 | None:intergenic | 35.0% | |
AACTGGAAACAATATTGAGG+AGG | - | chr4.4:21782262-21782281 | MS.gene053637:intron | 35.0% | |
AAGCATATAGAACCGAAGAT+GGG | - | chr4.4:21781160-21781179 | MS.gene053637:intron | 35.0% | |
AATAATGGCAAACATTGGGA+GGG | + | chr4.4:21782560-21782579 | None:intergenic | 35.0% | |
AATGTTTCCATAGCGAATGA+GGG | + | chr4.4:21780592-21780611 | None:intergenic | 35.0% | |
AGAATAGATCCATCTATTGC+CGG | + | chr4.4:21782470-21782489 | None:intergenic | 35.0% | |
AGCAACTGGAAACAATATTG+AGG | - | chr4.4:21782259-21782278 | MS.gene053637:intron | 35.0% | |
AGTTCTTGCCAATAAACGTT+GGG | - | chr4.4:21781296-21781315 | MS.gene053637:intron | 35.0% | |
ATATGTTACAGATGCAACAG+AGG | + | chr4.4:21782744-21782763 | None:intergenic | 35.0% | |
ATCGCCAAAAACTTATGTTG+TGG | - | chr4.4:21781481-21781500 | MS.gene053637:intron | 35.0% | |
ATTACAGTCACAATTACGGT+TGG | - | chr4.4:21780811-21780830 | MS.gene053637:CDS | 35.0% | |
CAAGACATCAGAAAATCCAT+TGG | + | chr4.4:21782228-21782247 | None:intergenic | 35.0% | |
CATTGCGATATTTCATATCG+TGG | - | chr4.4:21781404-21781423 | MS.gene053637:CDS | 35.0% | |
GGAAAATGATATCTTCACTC+CGG | - | chr4.4:21782448-21782467 | MS.gene053637:intron | 35.0% | |
GTATTGAGGACAAAAAGTCA+TGG | - | chr4.4:21782993-21783012 | MS.gene053637:CDS | 35.0% | |
GTCAAGTGTAAAGTAGTACA+AGG | + | chr4.4:21780858-21780877 | None:intergenic | 35.0% | |
GTTGAAATACCCTTGTATGA+TGG | - | chr4.4:21780675-21780694 | MS.gene053637:intron | 35.0% | |
GTTTGCTCACATATCAAATC+TGG | - | chr4.4:21781075-21781094 | MS.gene053637:CDS | 35.0% | |
TGAAAAACTACGAGGAATAC+TGG | - | chr4.4:21782952-21782971 | MS.gene053637:intron | 35.0% | |
TGCAGAGCTGAATATAAAAC+AGG | - | chr4.4:21782914-21782933 | MS.gene053637:intron | 35.0% | |
TGGTATCATAAACTATGGAC+AGG | - | chr4.4:21780629-21780648 | MS.gene053637:CDS | 35.0% | |
TTGTCCCTTAAAATAGAAGG+AGG | + | chr4.4:21780312-21780331 | None:intergenic | 35.0% | |
TTTCCTCTTATCTCTCTTTG+TGG | - | chr4.4:21781325-21781344 | MS.gene053637:intron | 35.0% | |
! | ATACTGGTTGGAATACAAAC+AGG | - | chr4.4:21782968-21782987 | MS.gene053637:intron | 35.0% |
! | TACTGGTTGGAATACAAACA+GGG | - | chr4.4:21782969-21782988 | MS.gene053637:intron | 35.0% |
!! | ACAATGAAGATGGTTCTGAA+AGG | - | chr4.4:21780328-21780347 | MS.gene053637:CDS | 35.0% |
!! | ATAGACATCGCCATTGATTT+GGG | - | chr4.4:21782515-21782534 | MS.gene053637:intron | 35.0% |
AAACTACGAGGAATACTGGT+TGG | - | chr4.4:21782956-21782975 | MS.gene053637:intron | 40.0% | |
AATACAAACAGGGCGTATTG+AGG | - | chr4.4:21782979-21782998 | MS.gene053637:intron | 40.0% | |
AATGCTCTACGCATGAAGAT+GGG | - | chr4.4:21781210-21781229 | MS.gene053637:intron | 40.0% | |
ACGTTGTCTGAAAAACTACG+AGG | - | chr4.4:21782944-21782963 | MS.gene053637:intron | 40.0% | |
AGAAATGTGTACTCAGGTGA+TGG | + | chr4.4:21781692-21781711 | None:intergenic | 40.0% | |
AGACCACAAAGAGAGATAAG+AGG | + | chr4.4:21781331-21781350 | None:intergenic | 40.0% | |
AGTCTAATCAGCTTCATGCT+TGG | - | chr4.4:21781355-21781374 | MS.gene053637:intron | 40.0% | |
ATAGATGGATCTATTCTGCC+TGG | - | chr4.4:21782473-21782492 | MS.gene053637:intron | 40.0% | |
ATCAATGGCGATGTCTATGA+TGG | + | chr4.4:21782513-21782532 | None:intergenic | 40.0% | |
ATCACTATTGCCATGGTTAC+CGG | + | chr4.4:21781970-21781989 | None:intergenic | 40.0% | |
ATGCTGACATCAATTGGGAA+GGG | - | chr4.4:21780490-21780509 | MS.gene053637:intron | 40.0% | |
CAATGTTTCCATAGCGAATG+AGG | + | chr4.4:21780593-21780612 | None:intergenic | 40.0% | |
CAGTTCTTGCCAATAAACGT+TGG | - | chr4.4:21781295-21781314 | MS.gene053637:intron | 40.0% | |
CATAGAACGTTCCATATCAG+TGG | - | chr4.4:21782664-21782683 | MS.gene053637:intron | 40.0% | |
CATCATTTCCTCCACTGATA+TGG | + | chr4.4:21782678-21782697 | None:intergenic | 40.0% | |
GACAGATGCAGCTTCAATTT+CGG | - | chr4.4:21781436-21781455 | MS.gene053637:CDS | 40.0% | |
GCTGCTGGTATCATAAACTA+TGG | - | chr4.4:21780624-21780643 | MS.gene053637:CDS | 40.0% | |
GGTTGCGGTTATTGTTACAT+TGG | - | chr4.4:21780709-21780728 | MS.gene053637:intron | 40.0% | |
GTAACTGAAGCAAAAGCCAA+TGG | - | chr4.4:21782209-21782228 | MS.gene053637:intron | 40.0% | |
TAGATGGATCTATTCTGCCT+GGG | - | chr4.4:21782474-21782493 | MS.gene053637:intron | 40.0% | |
TAGTTTATGATACCAGCAGC+CGG | + | chr4.4:21780624-21780643 | None:intergenic | 40.0% | |
TATCTTAGGCCTTTGCTGAT+AGG | - | chr4.4:21781641-21781660 | MS.gene053637:CDS | 40.0% | |
TATGCTGACATCAATTGGGA+AGG | - | chr4.4:21780489-21780508 | MS.gene053637:intron | 40.0% | |
TCAACAAACTGCTCAACTGA+TGG | + | chr4.4:21781261-21781280 | None:intergenic | 40.0% | |
TGGAAACATTGAGATAAGCC+CGG | - | chr4.4:21780602-21780621 | MS.gene053637:CDS | 40.0% | |
TTGTTCTTGGATTCAGCAAC+TGG | - | chr4.4:21782245-21782264 | MS.gene053637:intron | 40.0% | |
! | AGGGCCACAACATAAGTTTT+TGG | + | chr4.4:21781488-21781507 | None:intergenic | 40.0% |
! | CATAGACATCGCCATTGATT+TGG | - | chr4.4:21782514-21782533 | MS.gene053637:intron | 40.0% |
! | CTTTTCACAAGTCACAACCA+AGG | + | chr4.4:21782054-21782073 | None:intergenic | 40.0% |
! | GAGTGTTACTAATTATGCCC+CGG | - | chr4.4:21781948-21781967 | MS.gene053637:intron | 40.0% |
! | TGGCTCCTCCTTCTATTTTA+AGG | - | chr4.4:21780304-21780323 | MS.gene053637:CDS | 40.0% |
!! | CGCCATTGATTTGGGTTATA+AGG | - | chr4.4:21782523-21782542 | MS.gene053637:intron | 40.0% |
!! | GGCTCCTCCTTCTATTTTAA+GGG | - | chr4.4:21780305-21780324 | MS.gene053637:CDS | 40.0% |
AAGAAGGATTCGCCCATCTT+CGG | + | chr4.4:21781175-21781194 | None:intergenic | 45.0% | |
ACCTCGTGGTAATTTCCAAC+AGG | + | chr4.4:21781728-21781747 | None:intergenic | 45.0% | |
AGAACGTTCCATATCAGTGG+AGG | - | chr4.4:21782667-21782686 | MS.gene053637:intron | 45.0% | |
AGATGGATCTATTCTGCCTG+GGG | - | chr4.4:21782475-21782494 | MS.gene053637:intron | 45.0% | |
AGTAAACTTGGGGGATACCA+TGG | - | chr4.4:21780980-21780999 | MS.gene053637:intron | 45.0% | |
AGTTTATGATACCAGCAGCC+GGG | + | chr4.4:21780623-21780642 | None:intergenic | 45.0% | |
ATAGGAACAGGAGCTGCATT+AGG | - | chr4.4:21781659-21781678 | MS.gene053637:CDS | 45.0% | |
ATCTTCACTCCGGCAATAGA+TGG | - | chr4.4:21782458-21782477 | MS.gene053637:intron | 45.0% | |
ATGCTCTACGCATGAAGATG+GGG | - | chr4.4:21781211-21781230 | MS.gene053637:intron | 45.0% | |
CAAACACACCCTATATCCAG+TGG | + | chr4.4:21781023-21781042 | None:intergenic | 45.0% | |
CAAGTTCTCAGTTGTTGCAG+TGG | + | chr4.4:21780934-21780953 | None:intergenic | 45.0% | |
CCTCGTGGTAATTTCCAACA+GGG | + | chr4.4:21781727-21781746 | None:intergenic | 45.0% | |
CTCATTTATTGCTCCCCTGT+TGG | - | chr4.4:21781710-21781729 | MS.gene053637:intron | 45.0% | |
CTCGTGGTAATTTCCAACAG+GGG | + | chr4.4:21781726-21781745 | None:intergenic | 45.0% | |
GAATGCTCTACGCATGAAGA+TGG | - | chr4.4:21781209-21781228 | MS.gene053637:intron | 45.0% | |
GACTGATGCAGTCAAAACTG+CGG | - | chr4.4:21780752-21780771 | MS.gene053637:intron | 45.0% | |
GGAAAGGGACGCTTTATCTT+AGG | - | chr4.4:21781627-21781646 | MS.gene053637:CDS | 45.0% | |
GTAAACTTGGGGGATACCAT+GGG | - | chr4.4:21780981-21781000 | MS.gene053637:intron | 45.0% | |
TAATTATGCCCCGGTAACCA+TGG | - | chr4.4:21781957-21781976 | MS.gene053637:intron | 45.0% | |
TAGATCCGCCACTGGATATA+GGG | - | chr4.4:21781012-21781031 | MS.gene053637:intron | 45.0% | |
TCACTATTGCCATGGTTACC+GGG | + | chr4.4:21781969-21781988 | None:intergenic | 45.0% | |
TTATGTTGTGGCCCTAACAG+TGG | - | chr4.4:21781493-21781512 | MS.gene053637:intron | 45.0% | |
! | AACTGCTCAACTGATGGTGA+TGG | + | chr4.4:21781255-21781274 | None:intergenic | 45.0% |
! | AATCCTTCTTTTCCGACCAG+AGG | - | chr4.4:21781185-21781204 | MS.gene053637:intron | 45.0% |
!!! | AGTTTTTGGCGATCTCCACA+AGG | + | chr4.4:21781474-21781493 | None:intergenic | 45.0% |
!! | AAAAAAAAAAAAAAAATAAC+AGG | - | chr4.4:21781849-21781868 | MS.gene053637:intron | 5.0% |
!! | AAAAAAAAAAAAAAATAACA+GGG | - | chr4.4:21781850-21781869 | MS.gene053637:intron | 5.0% |
!!! | TTTTTTTTTAAAAAAAAAGA+AGG | + | chr4.4:21781837-21781856 | None:intergenic | 5.0% |
AACAGGAGCTGCATTAGGCT+TGG | - | chr4.4:21781664-21781683 | MS.gene053637:CDS | 50.0% | |
AATTACCACGAGGTCAGCCA+TGG | - | chr4.4:21781734-21781753 | MS.gene053637:intron | 50.0% | |
ACACACCCTATATCCAGTGG+CGG | + | chr4.4:21781020-21781039 | None:intergenic | 50.0% | |
AGGCCTTTGCTGATAGGAAC+AGG | - | chr4.4:21781647-21781666 | MS.gene053637:CDS | 50.0% | |
CAAGGATCCCTCATTCGCTA+TGG | - | chr4.4:21780582-21780601 | MS.gene053637:CDS | 50.0% | |
CACTATTGCCATGGTTACCG+GGG | + | chr4.4:21781968-21781987 | None:intergenic | 50.0% | |
CATCGATCAATAGCTGGCAG+TGG | - | chr4.4:21781907-21781926 | MS.gene053637:intron | 50.0% | |
CCCTGTTGGAAATTACCACG+AGG | - | chr4.4:21781724-21781743 | MS.gene053637:intron | 50.0% | |
GCGGTTCAGAACCACTGTTA+GGG | + | chr4.4:21781507-21781526 | None:intergenic | 50.0% | |
GCTCCTGTTCCTATCAGCAA+AGG | + | chr4.4:21781653-21781672 | None:intergenic | 50.0% | |
GTAGATCCGCCACTGGATAT+AGG | - | chr4.4:21781011-21781030 | MS.gene053637:intron | 50.0% | |
TCTCCTCTGGTCGGAAAAGA+AGG | + | chr4.4:21781191-21781210 | None:intergenic | 50.0% | |
TGAAACAGGTACCTCCTCCA+GGG | - | chr4.4:21781606-21781625 | MS.gene053637:CDS | 50.0% | |
TGCGGTTCAGAACCACTGTT+AGG | + | chr4.4:21781508-21781527 | None:intergenic | 50.0% | |
TGCTCTACGCATGAAGATGG+GGG | - | chr4.4:21781212-21781231 | MS.gene053637:intron | 50.0% | |
TTGAAACAGGTACCTCCTCC+AGG | - | chr4.4:21781605-21781624 | MS.gene053637:CDS | 50.0% | |
! | AGATAAAGCGTCCCTTTCCC+TGG | + | chr4.4:21781626-21781645 | None:intergenic | 50.0% |
! | ATGCGTAGAGCATTCTCCTC+TGG | + | chr4.4:21781204-21781223 | None:intergenic | 50.0% |
! | ATGGATTTTCGTGTGACCCC+AGG | + | chr4.4:21782494-21782513 | None:intergenic | 50.0% |
! | CGGTTGCGATTTTCACCTTG+TGG | - | chr4.4:21781456-21781475 | MS.gene053637:intron | 50.0% |
! | GCTGATGAAGTGTTCTGCAC+AGG | - | chr4.4:21782701-21782720 | MS.gene053637:CDS | 50.0% |
! | GTAGAGCATTCTCCTCTGGT+CGG | + | chr4.4:21781200-21781219 | None:intergenic | 50.0% |
!! | ATCCAGTGGCGGATCTACTT+GGG | + | chr4.4:21781009-21781028 | None:intergenic | 50.0% |
!! | TATCCAGTGGCGGATCTACT+TGG | + | chr4.4:21781010-21781029 | None:intergenic | 50.0% |
AGGTACCTCCTCCAGGGAAA+GGG | - | chr4.4:21781612-21781631 | MS.gene053637:CDS | 55.0% | |
ATTGAGATAAGCCCGGCTGC+TGG | - | chr4.4:21780609-21780628 | MS.gene053637:CDS | 55.0% | |
CAAATCCATGGCTGACCTCG+TGG | + | chr4.4:21781742-21781761 | None:intergenic | 55.0% | |
CACGAGGTCAGCCATGGATT+TGG | - | chr4.4:21781740-21781759 | MS.gene053637:intron | 55.0% | |
CGATCAATAGCTGGCAGTGG+TGG | - | chr4.4:21781910-21781929 | MS.gene053637:intron | 55.0% | |
GCATGAAGATGGGGGCTGAT+AGG | - | chr4.4:21781220-21781239 | MS.gene053637:intron | 55.0% | |
GTTCTGCACAGGAACTGCAG+TGG | - | chr4.4:21782712-21782731 | MS.gene053637:CDS | 55.0% | |
! | ATAGCTGGCAGTGGTGGAAC+AGG | - | chr4.4:21781916-21781935 | MS.gene053637:intron | 55.0% |
! | TAAAGCGTCCCTTTCCCTGG+AGG | + | chr4.4:21781623-21781642 | None:intergenic | 55.0% |
!! | TCCAGTGGCGGATCTACTTG+GGG | + | chr4.4:21781008-21781027 | None:intergenic | 55.0% |
CAGGTACCTCCTCCAGGGAA+AGG | - | chr4.4:21781611-21781630 | MS.gene053637:CDS | 60.0% | |
CGGATCTACTTGGGGACCCA+TGG | + | chr4.4:21781000-21781019 | None:intergenic | 60.0% | |
TCCCCAAGTAGATCCGCCAC+TGG | - | chr4.4:21781004-21781023 | MS.gene053637:intron | 60.0% | |
AGCGTCCCTTTCCCTGGAGG+AGG | + | chr4.4:21781620-21781639 | None:intergenic | 65.0% | |
! | GCTGGCAGTGGTGGAACAGG+AGG | - | chr4.4:21781919-21781938 | MS.gene053637:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 21780303 | 21783033 | 21780303 | ID=MS.gene053637 |
chr4.4 | mRNA | 21780303 | 21783033 | 21780303 | ID=MS.gene053637.t1;Parent=MS.gene053637 |
chr4.4 | exon | 21782987 | 21783033 | 21782987 | ID=MS.gene053637.t1.exon1;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21782987 | 21783033 | 21782987 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21782686 | 21782863 | 21782686 | ID=MS.gene053637.t1.exon2;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21782686 | 21782863 | 21782686 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21782019 | 21782195 | 21782019 | ID=MS.gene053637.t1.exon3;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21782019 | 21782195 | 21782019 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21781591 | 21781722 | 21781591 | ID=MS.gene053637.t1.exon4;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21781591 | 21781722 | 21781591 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21781367 | 21781465 | 21781367 | ID=MS.gene053637.t1.exon5;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21781367 | 21781465 | 21781367 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21781023 | 21781139 | 21781023 | ID=MS.gene053637.t1.exon6;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21781023 | 21781139 | 21781023 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21780792 | 21780887 | 21780792 | ID=MS.gene053637.t1.exon7;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21780792 | 21780887 | 21780792 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21780562 | 21780674 | 21780562 | ID=MS.gene053637.t1.exon8;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21780562 | 21780674 | 21780562 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
chr4.4 | exon | 21780303 | 21780417 | 21780303 | ID=MS.gene053637.t1.exon9;Parent=MS.gene053637.t1 |
chr4.4 | CDS | 21780303 | 21780417 | 21780303 | ID=cds.MS.gene053637.t1;Parent=MS.gene053637.t1 |
Gene Sequence |
Protein sequence |