Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053689.t1 | XP_003614938.2 | 96.2 | 453 | 17 | 0 | 1 | 453 | 37 | 489 | 3.20E-252 | 880.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053689.t1 | Q9SYJ2 | 50.1 | 457 | 217 | 9 | 1 | 448 | 66 | 520 | 7.8e-122 | 438.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053689.t1 | G7K9Z4 | 96.2 | 453 | 17 | 0 | 1 | 453 | 37 | 489 | 2.3e-252 | 880.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053689 | MS.gene08594 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene053689 | MS.gene48577 | 0.804921 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053689.t1 | MTR_5g061520 | 96.247 | 453 | 17 | 0 | 1 | 453 | 37 | 489 | 0.0 | 909 |
| MS.gene053689.t1 | MTR_1g086650 | 50.985 | 457 | 214 | 7 | 1 | 452 | 85 | 536 | 1.77e-156 | 454 |
| MS.gene053689.t1 | MTR_5g091660 | 49.227 | 453 | 211 | 8 | 1 | 444 | 86 | 528 | 1.06e-148 | 434 |
| MS.gene053689.t1 | MTR_3g448430 | 46.341 | 451 | 224 | 10 | 1 | 443 | 69 | 509 | 4.63e-136 | 401 |
| MS.gene053689.t1 | MTR_3g048330 | 58.214 | 280 | 110 | 3 | 174 | 449 | 1 | 277 | 1.31e-114 | 338 |
| MS.gene053689.t1 | MTR_8g030620 | 42.325 | 456 | 242 | 7 | 1 | 443 | 48 | 495 | 1.63e-113 | 343 |
| MS.gene053689.t1 | MTR_1g040500 | 41.037 | 463 | 255 | 10 | 2 | 451 | 42 | 499 | 1.78e-113 | 345 |
| MS.gene053689.t1 | MTR_4g415290 | 42.048 | 459 | 251 | 8 | 1 | 450 | 42 | 494 | 4.44e-111 | 337 |
| MS.gene053689.t1 | MTR_5g080360 | 39.913 | 461 | 252 | 9 | 1 | 446 | 23 | 473 | 2.94e-109 | 332 |
| MS.gene053689.t1 | MTR_7g067380 | 38.925 | 465 | 256 | 7 | 1 | 450 | 45 | 496 | 1.79e-105 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053689.t1 | AT4G01950 | 50.437 | 458 | 214 | 10 | 1 | 448 | 66 | 520 | 3.13e-155 | 450 |
| MS.gene053689.t1 | AT4G01950 | 50.437 | 458 | 214 | 10 | 1 | 448 | 94 | 548 | 1.88e-154 | 449 |
| MS.gene053689.t1 | AT1G02390 | 49.241 | 461 | 211 | 8 | 1 | 444 | 72 | 526 | 3.21e-150 | 438 |
| MS.gene053689.t1 | AT1G06520 | 47.484 | 457 | 223 | 9 | 1 | 444 | 131 | 583 | 1.39e-143 | 423 |
| MS.gene053689.t1 | AT3G11430 | 40.000 | 460 | 253 | 9 | 1 | 446 | 32 | 482 | 3.90e-112 | 340 |
| MS.gene053689.t1 | AT5G06090 | 40.611 | 458 | 253 | 12 | 1 | 446 | 30 | 480 | 2.35e-111 | 337 |
| MS.gene053689.t1 | AT2G38110 | 41.372 | 452 | 250 | 9 | 2 | 443 | 46 | 492 | 6.61e-108 | 328 |
| MS.gene053689.t1 | AT1G01610 | 41.612 | 459 | 255 | 8 | 1 | 449 | 43 | 498 | 8.66e-107 | 326 |
| MS.gene053689.t1 | AT4G00400 | 41.150 | 452 | 253 | 7 | 1 | 443 | 43 | 490 | 2.01e-101 | 312 |
| MS.gene053689.t1 | AT3G11325 | 32.222 | 450 | 205 | 10 | 1 | 446 | 20 | 373 | 4.11e-69 | 225 |
| MS.gene053689.t1 | AT3G11325 | 32.222 | 450 | 205 | 10 | 1 | 446 | 17 | 370 | 4.12e-69 | 225 |
Find 75 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTGAAAGACTATTT+AGG | 0.195935 | 5.1:-47132867 | MS.gene053689:CDS |
| TGTAATGAGGGAAAAGTTTC+TGG | 0.203098 | 5.1:+47132691 | None:intergenic |
| GTATAAGAAAAGACACTTTA+AGG | 0.207106 | 5.1:-47133010 | MS.gene053689:CDS |
| GAGAATAGTATTGGTATTAT+TGG | 0.218296 | 5.1:-47132735 | MS.gene053689:CDS |
| TCAACTAGGTTTGAAGATTA+TGG | 0.218722 | 5.1:-47133051 | MS.gene053689:CDS |
| GAAAGACAAATATATGATTT+TGG | 0.225097 | 5.1:-47131161 | MS.gene053689:CDS |
| GTCATACAATGGTTACCTTT+TGG | 0.239819 | 5.1:-47132814 | MS.gene053689:CDS |
| AAATGAAATTGGAAAGAGTT+TGG | 0.246873 | 5.1:-47131209 | MS.gene053689:CDS |
| AAACCTTCCACCATTATTCT+TGG | 0.268121 | 5.1:+47132885 | None:intergenic |
| TTAACAAAGTAAACAGGATT+TGG | 0.272628 | 5.1:+47131310 | None:intergenic |
| GTCCCTGAAAATGCTAATAT+TGG | 0.280666 | 5.1:+47131766 | None:intergenic |
| ATTGGAGCTGATGCATTAAA+AGG | 0.310915 | 5.1:+47131784 | None:intergenic |
| TCTGGTCAATATACTCAATA+TGG | 0.319173 | 5.1:+47132709 | None:intergenic |
| TTTGTCTTTCCTAGTCAAAT+TGG | 0.322666 | 5.1:+47131174 | None:intergenic |
| AATGAAATTGGAAAGAGTTT+GGG | 0.331774 | 5.1:-47131208 | MS.gene053689:CDS |
| TTTGTTTCTTTCATACCCTT+TGG | 0.336221 | 5.1:-47133093 | MS.gene053689:CDS |
| ACATCACAAACATGTCAAAA+AGG | 0.340009 | 5.1:-47131268 | MS.gene053689:CDS |
| TCTCTACAAGTTGTTCCTTC+TGG | 0.351163 | 5.1:+47131478 | None:intergenic |
| GTTCTGATGAGAGGAGAAAT+TGG | 0.353548 | 5.1:-47131963 | MS.gene053689:CDS |
| GTGGATCAAGCAAAGTTCTA+TGG | 0.367532 | 5.1:+47131668 | None:intergenic |
| GTTTCTTGAAAGACTATTTA+GGG | 0.373176 | 5.1:-47132866 | MS.gene053689:CDS |
| TACCCTTTGGTATGGTTAGT+TGG | 0.374543 | 5.1:-47133080 | MS.gene053689:CDS |
| TCCTGTTGCTGTTGATGTTA+AGG | 0.382374 | 5.1:-47131401 | MS.gene053689:CDS |
| GCTTGTTGCTTTAACATCAT+AGG | 0.399072 | 5.1:+47132761 | None:intergenic |
| ATTGGAAAGAGTTTGGGATT+TGG | 0.401189 | 5.1:-47131202 | MS.gene053689:CDS |
| TATAAGAAAAGACACTTTAA+GGG | 0.412950 | 5.1:-47133009 | MS.gene053689:CDS |
| TTCTTTCATACCCTTTGGTA+TGG | 0.423298 | 5.1:-47133088 | MS.gene053689:CDS |
| TAGTAAGTTACCAAGAATAA+TGG | 0.425255 | 5.1:-47132895 | MS.gene053689:CDS |
| ACCTTAACATCAACAGCAAC+AGG | 0.427108 | 5.1:+47131400 | None:intergenic |
| GGACTAAACCTTAGCAAGTA+AGG | 0.432275 | 5.1:+47131454 | None:intergenic |
| AGCTGGTGGATATAAATGTT+TGG | 0.437289 | 5.1:-47131356 | MS.gene053689:CDS |
| ATGCTAGTTTCCTTTGAAGC+TGG | 0.441903 | 5.1:-47133137 | MS.gene053689:CDS |
| CTACTTAGAAGATGTTGGTT+GGG | 0.444813 | 5.1:-47132961 | MS.gene053689:CDS |
| TCATGGAAAATCAATGGCTT+AGG | 0.460797 | 5.1:+47131916 | None:intergenic |
| TTAGAAGATGTTGGTTGGGA+AGG | 0.468636 | 5.1:-47132957 | MS.gene053689:CDS |
| CGCGCGACCGAGCAAGAGAC+AGG | 0.475152 | 5.1:-47131546 | MS.gene053689:CDS |
| ACATCTTCTAAGTAGAACTT+TGG | 0.478280 | 5.1:+47132969 | None:intergenic |
| AGCAAGAGACAGGGATTCAA+TGG | 0.480606 | 5.1:-47131536 | MS.gene053689:CDS |
| CTAGTTTCCTTTGAAGCTGG+TGG | 0.484232 | 5.1:-47133134 | MS.gene053689:CDS |
| CTTCCATCATGGAAAATCAA+TGG | 0.487517 | 5.1:+47131910 | None:intergenic |
| ATAGTGTGTGATATATAAAG+TGG | 0.489764 | 5.1:+47131649 | None:intergenic |
| TTGAATCCCTGTCTCTTGCT+CGG | 0.491801 | 5.1:+47131539 | None:intergenic |
| TGCTTTAACATCATAGGAAG+TGG | 0.493418 | 5.1:+47132767 | None:intergenic |
| TAGTATTCCACCAGCTTCAA+AGG | 0.493486 | 5.1:+47133127 | None:intergenic |
| TTCCTTCTGGACACACTACA+AGG | 0.493940 | 5.1:+47131491 | None:intergenic |
| GTTTCTCAAACAAACCCAAA+AGG | 0.507148 | 5.1:+47132799 | None:intergenic |
| ACAAGCAAAGAGAATAGTAT+TGG | 0.508669 | 5.1:-47132744 | MS.gene053689:CDS |
| TCTACTTAGAAGATGTTGGT+TGG | 0.515294 | 5.1:-47132962 | MS.gene053689:CDS |
| CACCAACTAACCATACCAAA+GGG | 0.528093 | 5.1:+47133078 | None:intergenic |
| AGACACTTTAAGGGTAGGAA+TGG | 0.534443 | 5.1:-47133000 | MS.gene053689:CDS |
| AGAAACCAAACCTTGTAATG+AGG | 0.540345 | 5.1:+47132678 | None:intergenic |
| GTAGAGAGCCTTACTTGCTA+AGG | 0.541715 | 5.1:-47131462 | MS.gene053689:CDS |
| TGAAAGCCAATCTTCCATCA+TGG | 0.549956 | 5.1:+47131899 | None:intergenic |
| GAAACCAAACCTTGTAATGA+GGG | 0.554140 | 5.1:+47132679 | None:intergenic |
| AAGTTCTACTTAGAAGATGT+TGG | 0.556652 | 5.1:-47132966 | MS.gene053689:CDS |
| ATGGAGAAAATGCTTTGTGA+AGG | 0.565042 | 5.1:-47131517 | MS.gene053689:CDS |
| TTGGTTGCACCAATTTGACT+AGG | 0.569693 | 5.1:-47131183 | MS.gene053689:CDS |
| TTATGTTAAGTTCTGATGAG+AGG | 0.571837 | 5.1:-47131972 | MS.gene053689:CDS |
| AGAAAAGACACTTTAAGGGT+AGG | 0.579822 | 5.1:-47133005 | MS.gene053689:CDS |
| TTACCAAGAATAATGGTGGA+AGG | 0.588291 | 5.1:-47132888 | MS.gene053689:CDS |
| TAAGTTACCAAGAATAATGG+TGG | 0.588652 | 5.1:-47132892 | MS.gene053689:CDS |
| ATGTTCATGTGGTTACCACT+TGG | 0.589495 | 5.1:-47131850 | MS.gene053689:CDS |
| AACCTTGTAGTGTGTCCAGA+AGG | 0.589664 | 5.1:-47131493 | MS.gene053689:CDS |
| TCACCAACTAACCATACCAA+AGG | 0.596402 | 5.1:+47133077 | None:intergenic |
| ATTGAAAGAAATAGTCCAAG+TGG | 0.598959 | 5.1:+47131835 | None:intergenic |
| AACTTGCAGTTATTATGACA+AGG | 0.600625 | 5.1:+47131102 | None:intergenic |
| TTAGTTGGTGAGTATCAACT+AGG | 0.603020 | 5.1:-47133065 | MS.gene053689:CDS |
| ACTAGTGAAGATGTTACAGT+TGG | 0.610755 | 5.1:+47131874 | None:intergenic |
| CTTCACTAGTCATGTTCATG+TGG | 0.612621 | 5.1:-47131861 | MS.gene053689:CDS |
| ACTTTGTTAAAATACTTGAG+AGG | 0.622036 | 5.1:-47131297 | MS.gene053689:CDS |
| CTATATGTGACTGCTGAGAG+TGG | 0.637208 | 5.1:+47131619 | None:intergenic |
| TTTCTTGAAAGACTATTTAG+GGG | 0.640361 | 5.1:-47132865 | MS.gene053689:CDS |
| GCGCGACCGAGCAAGAGACA+GGG | 0.649802 | 5.1:-47131545 | MS.gene053689:CDS |
| AGAGACATAAAGTCATACAA+TGG | 0.657033 | 5.1:-47132825 | MS.gene053689:CDS |
| TCAGTTAGTTCAGCAAACAA+AGG | 0.659246 | 5.1:+47131433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTTTGTTAAAATTATTA+TGG | - | chr5.1:47131711-47131730 | MS.gene053689:CDS | 15.0% |
| !!! | TTTTAGACAAAAAAAAAAGT+TGG | + | chr5.1:47132210-47132229 | None:intergenic | 15.0% |
| !! | TATAAGAAAAGACACTTTAA+GGG | - | chr5.1:47131242-47131261 | MS.gene053689:CDS | 20.0% |
| !!! | AATTTTGTGCAAAATGAAAT+TGG | - | chr5.1:47133031-47133050 | MS.gene053689:CDS | 20.0% |
| !!! | AGTATTTTAACAAAGTAAAC+AGG | + | chr5.1:47132950-47132969 | None:intergenic | 20.0% |
| !!! | CTTTTGATTTTTTTCGTTTT+CGG | + | chr5.1:47132543-47132562 | None:intergenic | 20.0% |
| !!! | GAAAGACAAATATATGATTT+TGG | - | chr5.1:47133090-47133109 | MS.gene053689:CDS | 20.0% |
| !!! | TCAATTTTCAGAATAACATT+TGG | - | chr5.1:47132434-47132453 | MS.gene053689:intron | 20.0% |
| ! | AAATGAAATTGGAAAGAGTT+TGG | - | chr5.1:47133042-47133061 | MS.gene053689:CDS | 25.0% |
| ! | AATGAAATTGGAAAGAGTTT+GGG | - | chr5.1:47133043-47133062 | MS.gene053689:CDS | 25.0% |
| ! | ACTTTGTTAAAATACTTGAG+AGG | - | chr5.1:47132954-47132973 | MS.gene053689:CDS | 25.0% |
| ! | AGCTTAAAAAAAGAAAACGA+CGG | + | chr5.1:47131682-47131701 | None:intergenic | 25.0% |
| ! | ATAGTGTGTGATATATAAAG+TGG | + | chr5.1:47132605-47132624 | None:intergenic | 25.0% |
| ! | GTATAAGAAAAGACACTTTA+AGG | - | chr5.1:47131241-47131260 | MS.gene053689:CDS | 25.0% |
| ! | GTTTCTTGAAAGACTATTTA+GGG | - | chr5.1:47131385-47131404 | MS.gene053689:CDS | 25.0% |
| ! | TAGTAAGTTACCAAGAATAA+TGG | - | chr5.1:47131356-47131375 | MS.gene053689:CDS | 25.0% |
| ! | TTAACAAAGTAAACAGGATT+TGG | + | chr5.1:47132944-47132963 | None:intergenic | 25.0% |
| ! | TTTCTTGAAAGACTATTTAG+GGG | - | chr5.1:47131386-47131405 | MS.gene053689:CDS | 25.0% |
| !! | ATGGTTTTCTTAACCTTTTT+TGG | - | chr5.1:47131219-47131238 | MS.gene053689:CDS | 25.0% |
| !! | ATGTTCACACTTTAAAAACA+TGG | - | chr5.1:47131613-47131632 | MS.gene053689:CDS | 25.0% |
| !! | GTCTTTTCTTATACCAAAAA+AGG | + | chr5.1:47131235-47131254 | None:intergenic | 25.0% |
| !! | GTTAAGGTTAGTATGTTTTA+TGG | - | chr5.1:47132866-47132885 | MS.gene053689:CDS | 25.0% |
| !!! | GAGAATAGTATTGGTATTAT+TGG | - | chr5.1:47131516-47131535 | MS.gene053689:CDS | 25.0% |
| !!! | TTAATCGCGTTGTTTTAATA+GGG | + | chr5.1:47132685-47132704 | None:intergenic | 25.0% |
| AAGTTCTACTTAGAAGATGT+TGG | - | chr5.1:47131285-47131304 | MS.gene053689:CDS | 30.0% | |
| AATTTCGCGGTTTAATACTA+TGG | - | chr5.1:47131835-47131854 | MS.gene053689:CDS | 30.0% | |
| ACAAGCAAAGAGAATAGTAT+TGG | - | chr5.1:47131507-47131526 | MS.gene053689:CDS | 30.0% | |
| ACATCACAAACATGTCAAAA+AGG | - | chr5.1:47132983-47133002 | MS.gene053689:CDS | 30.0% | |
| ACATCTTCTAAGTAGAACTT+TGG | + | chr5.1:47131285-47131304 | None:intergenic | 30.0% | |
| AGAGACATAAAGTCATACAA+TGG | - | chr5.1:47131426-47131445 | MS.gene053689:CDS | 30.0% | |
| ATTGAAAGAAATAGTCCAAG+TGG | + | chr5.1:47132419-47132438 | None:intergenic | 30.0% | |
| GGATTCAAGTAATGAAAAAC+AGG | + | chr5.1:47132923-47132942 | None:intergenic | 30.0% | |
| GGTTTCTTGAAAGACTATTT+AGG | - | chr5.1:47131384-47131403 | MS.gene053689:CDS | 30.0% | |
| TAAGTTACCAAGAATAATGG+TGG | - | chr5.1:47131359-47131378 | MS.gene053689:CDS | 30.0% | |
| TCAACTAGGTTTGAAGATTA+TGG | - | chr5.1:47131200-47131219 | MS.gene053689:CDS | 30.0% | |
| TCTGGTCAATATACTCAATA+TGG | + | chr5.1:47131545-47131564 | None:intergenic | 30.0% | |
| TGCATTATTGTCTAATTTCG+CGG | - | chr5.1:47131822-47131841 | MS.gene053689:CDS | 30.0% | |
| TTTGTCTTTCCTAGTCAAAT+TGG | + | chr5.1:47133080-47133099 | None:intergenic | 30.0% | |
| ! | CTCCAATATTAGCATTTTCA+GGG | - | chr5.1:47132483-47132502 | MS.gene053689:intron | 30.0% |
| ! | TCATACAATGGTTACCTTTT+GGG | - | chr5.1:47131438-47131457 | MS.gene053689:CDS | 30.0% |
| ! | TTATGTTAAGTTCTGATGAG+AGG | - | chr5.1:47132279-47132298 | MS.gene053689:intron | 30.0% |
| ! | TTTGTTTCTTTCATACCCTT+TGG | - | chr5.1:47131158-47131177 | MS.gene053689:CDS | 30.0% |
| ! | TTTTGACATGTTTGTGATGT+TGG | + | chr5.1:47132983-47133002 | None:intergenic | 30.0% |
| !! | GACAAATATATGATTTTGGC+AGG | - | chr5.1:47133094-47133113 | MS.gene053689:CDS | 30.0% |
| !!! | ACAAGGTTTGGTTTCTTTTT+TGG | - | chr5.1:47131580-47131599 | MS.gene053689:CDS | 30.0% |
| !!! | GTTAATCGCGTTGTTTTAAT+AGG | + | chr5.1:47132686-47132705 | None:intergenic | 30.0% |
| !!! | TAATCGCGTTGTTTTAATAG+GGG | + | chr5.1:47132684-47132703 | None:intergenic | 30.0% |
| AAACCTTCCACCATTATTCT+TGG | + | chr5.1:47131369-47131388 | None:intergenic | 35.0% | |
| ACTAGTGAAGATGTTACAGT+TGG | + | chr5.1:47132380-47132399 | None:intergenic | 35.0% | |
| AGAAACCAAACCTTGTAATG+AGG | + | chr5.1:47131576-47131595 | None:intergenic | 35.0% | |
| ATGGAGAAAATGCTTTGTGA+AGG | - | chr5.1:47132734-47132753 | MS.gene053689:CDS | 35.0% | |
| ATTGGAGCTGATGCATTAAA+AGG | + | chr5.1:47132470-47132489 | None:intergenic | 35.0% | |
| CTTCCATCATGGAAAATCAA+TGG | + | chr5.1:47132344-47132363 | None:intergenic | 35.0% | |
| GAAACCAAACCTTGTAATGA+GGG | + | chr5.1:47131575-47131594 | None:intergenic | 35.0% | |
| GAATGATTGTCCCAAAATCA+TGG | - | chr5.1:47132140-47132159 | MS.gene053689:intron | 35.0% | |
| GTCCCTGAAAATGCTAATAT+TGG | + | chr5.1:47132488-47132507 | None:intergenic | 35.0% | |
| GTTTCTCAAACAAACCCAAA+AGG | + | chr5.1:47131455-47131474 | None:intergenic | 35.0% | |
| TCACAAACATGTCAAAAAGG+TGG | - | chr5.1:47132986-47133005 | MS.gene053689:CDS | 35.0% | |
| TCAGTTAGTTCAGCAAACAA+AGG | + | chr5.1:47132821-47132840 | None:intergenic | 35.0% | |
| TCATGGAAAATCAATGGCTT+AGG | + | chr5.1:47132338-47132357 | None:intergenic | 35.0% | |
| TCTACTTAGAAGATGTTGGT+TGG | - | chr5.1:47131289-47131308 | MS.gene053689:CDS | 35.0% | |
| TGCTTTAACATCATAGGAAG+TGG | + | chr5.1:47131487-47131506 | None:intergenic | 35.0% | |
| TGTAATGAGGGAAAAGTTTC+TGG | + | chr5.1:47131563-47131582 | None:intergenic | 35.0% | |
| TGTTCATAGTCGCTAATTCA+CGG | + | chr5.1:47131745-47131764 | None:intergenic | 35.0% | |
| TTCTTTCATACCCTTTGGTA+TGG | - | chr5.1:47131163-47131182 | MS.gene053689:CDS | 35.0% | |
| ! | AGAAAAGACACTTTAAGGGT+AGG | - | chr5.1:47131246-47131265 | MS.gene053689:CDS | 35.0% |
| ! | AGCTGGTGGATATAAATGTT+TGG | - | chr5.1:47132895-47132914 | MS.gene053689:CDS | 35.0% |
| ! | ATGTTTTATGGAACAACAGC+TGG | - | chr5.1:47132878-47132897 | MS.gene053689:CDS | 35.0% |
| ! | ATTGGAAAGAGTTTGGGATT+TGG | - | chr5.1:47133049-47133068 | MS.gene053689:CDS | 35.0% |
| ! | CTACTTAGAAGATGTTGGTT+GGG | - | chr5.1:47131290-47131309 | MS.gene053689:CDS | 35.0% |
| ! | GAAACTTTTCCCTCATTACA+AGG | - | chr5.1:47131563-47131582 | MS.gene053689:CDS | 35.0% |
| ! | GCTCCAATATTAGCATTTTC+AGG | - | chr5.1:47132482-47132501 | MS.gene053689:intron | 35.0% |
| ! | GTCATACAATGGTTACCTTT+TGG | - | chr5.1:47131437-47131456 | MS.gene053689:CDS | 35.0% |
| ! | TTACCAAGAATAATGGTGGA+AGG | - | chr5.1:47131363-47131382 | MS.gene053689:CDS | 35.0% |
| ! | TTTTCCCTCATTACAAGGTT+TGG | - | chr5.1:47131568-47131587 | MS.gene053689:CDS | 35.0% |
| !! | ATGATTTTGGCAGGTAATGA+AGG | - | chr5.1:47133103-47133122 | MS.gene053689:CDS | 35.0% |
| !! | GATTTTCCATGATGGAAGAT+TGG | - | chr5.1:47132346-47132365 | MS.gene053689:intron | 35.0% |
| !! | GCTTGTTGCTTTAACATCAT+AGG | + | chr5.1:47131493-47131512 | None:intergenic | 35.0% |
| !! | TTAGTTGGTGAGTATCAACT+AGG | - | chr5.1:47131186-47131205 | MS.gene053689:CDS | 35.0% |
| !!! | AAGCCATTGATTTTCCATGA+TGG | - | chr5.1:47132338-47132357 | MS.gene053689:intron | 35.0% |
| !!! | ATTTTTTTCGTTTTCGGTCG+AGG | + | chr5.1:47132537-47132556 | None:intergenic | 35.0% |
| !!! | GGCTTAGGAAACAACTTTTT+TGG | + | chr5.1:47132323-47132342 | None:intergenic | 35.0% |
| ACCTTAACATCAACAGCAAC+AGG | + | chr5.1:47132854-47132873 | None:intergenic | 40.0% | |
| ATACTGCGATTCCTGATTGT+AGG | - | chr5.1:47132117-47132136 | MS.gene053689:intron | 40.0% | |
| ATGTTCATGTGGTTACCACT+TGG | - | chr5.1:47132401-47132420 | MS.gene053689:intron | 40.0% | |
| CACCAACTAACCATACCAAA+GGG | + | chr5.1:47131176-47131195 | None:intergenic | 40.0% | |
| CTTCACTAGTCATGTTCATG+TGG | - | chr5.1:47132390-47132409 | MS.gene053689:intron | 40.0% | |
| GACAATCATTCCCTACAATC+AGG | + | chr5.1:47132131-47132150 | None:intergenic | 40.0% | |
| GGACTAAACCTTAGCAAGTA+AGG | + | chr5.1:47132800-47132819 | None:intergenic | 40.0% | |
| GTGGATCAAGCAAAGTTCTA+TGG | + | chr5.1:47132586-47132605 | None:intergenic | 40.0% | |
| GTTCTGATGAGAGGAGAAAT+TGG | - | chr5.1:47132288-47132307 | MS.gene053689:intron | 40.0% | |
| TACCCTTTGGTATGGTTAGT+TGG | - | chr5.1:47131171-47131190 | MS.gene053689:CDS | 40.0% | |
| TACTGCGATTCCTGATTGTA+GGG | - | chr5.1:47132118-47132137 | MS.gene053689:intron | 40.0% | |
| TAGTATTCCACCAGCTTCAA+AGG | + | chr5.1:47131127-47131146 | None:intergenic | 40.0% | |
| TCACCAACTAACCATACCAA+AGG | + | chr5.1:47131177-47131196 | None:intergenic | 40.0% | |
| TCTCTACAAGTTGTTCCTTC+TGG | + | chr5.1:47132776-47132795 | None:intergenic | 40.0% | |
| TGAAAGCCAATCTTCCATCA+TGG | + | chr5.1:47132355-47132374 | None:intergenic | 40.0% | |
| TGATTGTCCCAAAATCATGG+TGG | - | chr5.1:47132143-47132162 | MS.gene053689:intron | 40.0% | |
| TTGGTTGCACCAATTTGACT+AGG | - | chr5.1:47133068-47133087 | MS.gene053689:CDS | 40.0% | |
| ! | AGACACTTTAAGGGTAGGAA+TGG | - | chr5.1:47131251-47131270 | MS.gene053689:CDS | 40.0% |
| ! | TCCTGTTGCTGTTGATGTTA+AGG | - | chr5.1:47132850-47132869 | MS.gene053689:CDS | 40.0% |
| ! | TTAGAAGATGTTGGTTGGGA+AGG | - | chr5.1:47131294-47131313 | MS.gene053689:CDS | 40.0% |
| ! | TTTTATGGAACAACAGCTGG+TGG | - | chr5.1:47132881-47132900 | MS.gene053689:CDS | 40.0% |
| !! | ATGCTAGTTTCCTTTGAAGC+TGG | - | chr5.1:47131114-47131133 | MS.gene053689:CDS | 40.0% |
| AACCTTGTAGTGTGTCCAGA+AGG | - | chr5.1:47132758-47132777 | MS.gene053689:CDS | 45.0% | |
| AGCAAGAGACAGGGATTCAA+TGG | - | chr5.1:47132715-47132734 | MS.gene053689:CDS | 45.0% | |
| CATAGTCGCTAATTCACGGA+AGG | + | chr5.1:47131741-47131760 | None:intergenic | 45.0% | |
| CTATATGTGACTGCTGAGAG+TGG | + | chr5.1:47132635-47132654 | None:intergenic | 45.0% | |
| TTCCTTCTGGACACACTACA+AGG | + | chr5.1:47132763-47132782 | None:intergenic | 45.0% | |
| TTGAATCCCTGTCTCTTGCT+CGG | + | chr5.1:47132715-47132734 | None:intergenic | 45.0% | |
| ! | CGTTTTCGGTCGAGGTTTTA+GGG | + | chr5.1:47132529-47132548 | None:intergenic | 45.0% |
| ! | GTAGAGAGCCTTACTTGCTA+AGG | - | chr5.1:47132789-47132808 | MS.gene053689:CDS | 45.0% |
| ! | TCGTTTTCGGTCGAGGTTTT+AGG | + | chr5.1:47132530-47132549 | None:intergenic | 45.0% |
| !! | CTAGTTTCCTTTGAAGCTGG+TGG | - | chr5.1:47131117-47131136 | MS.gene053689:CDS | 45.0% |
| ! | ACAGCGTGCCACCATGATTT+TGG | + | chr5.1:47132154-47132173 | None:intergenic | 50.0% |
| ! | CAGCGTGCCACCATGATTTT+GGG | + | chr5.1:47132153-47132172 | None:intergenic | 50.0% |
| GCGCGACCGAGCAAGAGACA+GGG | - | chr5.1:47132706-47132725 | MS.gene053689:CDS | 65.0% | |
| CGCGCGACCGAGCAAGAGAC+AGG | - | chr5.1:47132705-47132724 | MS.gene053689:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 47131114 | 47133159 | 47131114 | ID=MS.gene053689 |
| chr5.1 | mRNA | 47131114 | 47133159 | 47131114 | ID=MS.gene053689.t1;Parent=MS.gene053689 |
| chr5.1 | exon | 47132689 | 47133159 | 47132689 | ID=MS.gene053689.t1.exon1;Parent=MS.gene053689.t1 |
| chr5.1 | CDS | 47132689 | 47133159 | 47132689 | ID=cds.MS.gene053689.t1;Parent=MS.gene053689.t1 |
| chr5.1 | exon | 47131114 | 47132004 | 47131114 | ID=MS.gene053689.t1.exon2;Parent=MS.gene053689.t1 |
| chr5.1 | CDS | 47131114 | 47132004 | 47131114 | ID=cds.MS.gene053689.t1;Parent=MS.gene053689.t1 |
| Gene Sequence |
| Protein sequence |
