Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053765.t1 | XP_024639979.1 | 91.6 | 1111 | 78 | 3 | 1 | 1103 | 1 | 1104 | 0.00E+00 | 2018.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053765.t1 | P0DM58 | 48.6 | 1134 | 472 | 16 | 1 | 1102 | 1 | 1055 | 1.4e-289 | 997.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053765.t1 | G7K8W4 | 91.4 | 1114 | 78 | 3 | 1 | 1103 | 1 | 1107 | 0.0e+00 | 2017.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053765 | MS.gene072873 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene053765 | MS.gene47695 | 0.81157 | 6.55E-51 | -1.69E-46 |
| MS.gene053765 | MS.gene74015 | 0.963446 | 4.29E-122 | -1.69E-46 |
| MS.gene053765 | MS.gene77080 | 0.804891 | 1.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053765.t1 | MTR_5g059080 | 92.280 | 1114 | 68 | 3 | 1 | 1103 | 1 | 1107 | 0.0 | 2088 |
| MS.gene053765.t1 | MTR_5g058810 | 86.942 | 896 | 64 | 5 | 1 | 885 | 1 | 854 | 0.0 | 1554 |
| MS.gene053765.t1 | MTR_8g073170 | 34.429 | 517 | 284 | 9 | 343 | 856 | 335 | 799 | 1.68e-81 | 286 |
| MS.gene053765.t1 | MTR_4g021750 | 33.594 | 128 | 85 | 0 | 503 | 630 | 208 | 335 | 4.32e-12 | 70.9 |
| MS.gene053765.t1 | MTR_4g021750 | 33.594 | 128 | 85 | 0 | 503 | 630 | 381 | 508 | 4.33e-12 | 70.9 |
| MS.gene053765.t1 | MTR_4g021750 | 33.594 | 128 | 85 | 0 | 503 | 630 | 149 | 276 | 4.68e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053765.t1 | AT1G77680 | 48.677 | 1134 | 471 | 17 | 1 | 1102 | 1 | 1055 | 0.0 | 1008 |
| MS.gene053765.t1 | AT2G17510 | 33.010 | 515 | 290 | 8 | 345 | 856 | 336 | 798 | 5.42e-78 | 276 |
| MS.gene053765.t1 | AT2G17510 | 30.965 | 549 | 290 | 11 | 345 | 856 | 381 | 877 | 7.21e-70 | 254 |
| MS.gene053765.t1 | AT5G02250 | 33.858 | 127 | 84 | 0 | 504 | 630 | 399 | 525 | 2.46e-13 | 75.1 |
Find 246 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAACAGGATAACAATTT+TGG | 0.086775 | 5.1:+45697848 | None:intergenic |
| CTATACATGACCTCTTATTT+TGG | 0.122802 | 5.1:-45693649 | MS.gene053765:CDS |
| CCTAACCATTTAAGTTTAAT+TGG | 0.129324 | 5.1:-45699049 | MS.gene053765:CDS |
| ACTACCAGAATTAATCTTTA+TGG | 0.131041 | 5.1:+45698976 | None:intergenic |
| TCAGAAGCATGGTTTAAATT+TGG | 0.160841 | 5.1:-45697637 | MS.gene053765:CDS |
| AATTATCCATTGTAACTTTC+AGG | 0.188115 | 5.1:+45693866 | None:intergenic |
| CCAAAACGGCCATGTAATTT+AGG | 0.201358 | 5.1:+45697969 | None:intergenic |
| CACCCTGCCAGTTGGTCTTT+TGG | 0.215763 | 5.1:+45698892 | None:intergenic |
| GATGACGGGCCTCTTGATTT+TGG | 0.222420 | 5.1:-45693679 | MS.gene053765:CDS |
| TTAGTCCAATTAAACTTAAA+TGG | 0.230380 | 5.1:+45699044 | None:intergenic |
| AAACACTTGTTGACCTAAAC+TGG | 0.241872 | 5.1:+45698240 | None:intergenic |
| GTGGACTAAAATAATTTCTT+TGG | 0.246535 | 5.1:+45700400 | None:intergenic |
| CCAGACTTACAGATCTATTC+TGG | 0.253997 | 5.1:+45699989 | None:intergenic |
| CAGAAGATGCTGTTACATTT+AGG | 0.254943 | 5.1:-45700528 | MS.gene053765:CDS |
| CTCCTATATGCACGCTTATT+AGG | 0.265216 | 5.1:+45693940 | None:intergenic |
| TCGGCTCGTTACAGTAAATT+TGG | 0.265641 | 5.1:-45700432 | MS.gene053765:CDS |
| TGAATGTAGGGAGGCTTTAA+TGG | 0.274538 | 5.1:-45697250 | MS.gene053765:CDS |
| CCTAAATTACATGGCCGTTT+TGG | 0.283449 | 5.1:-45697969 | MS.gene053765:CDS |
| GCATTATTCTCAGAAAATAT+TGG | 0.284357 | 5.1:-45698185 | MS.gene053765:CDS |
| TCCTTCAACTGCAACTGATT+TGG | 0.284822 | 5.1:-45698372 | MS.gene053765:CDS |
| GGCCATATCTTGCACAGCTT+TGG | 0.284985 | 5.1:-45698569 | MS.gene053765:CDS |
| GGAAATGGATAACTTCTATA+AGG | 0.299452 | 5.1:+45699115 | None:intergenic |
| TTATCAGAAGCAAGAGTATT+AGG | 0.318795 | 5.1:-45694656 | MS.gene053765:CDS |
| CTAACAAGAAGCATTATATT+AGG | 0.326704 | 5.1:+45698704 | None:intergenic |
| TATTGAGGAGTATATGCTTT+TGG | 0.328139 | 5.1:-45697769 | MS.gene053765:CDS |
| GCTGTACCTTCTTCTGCTTC+AGG | 0.338673 | 5.1:+45697100 | None:intergenic |
| TCTCTCAGCTTCCGCACATT+AGG | 0.342391 | 5.1:+45697675 | None:intergenic |
| GCCATATCTTGCACAGCTTT+GGG | 0.345953 | 5.1:-45698568 | MS.gene053765:CDS |
| TTAGGAAACTTTGGATCAAT+TGG | 0.347208 | 5.1:+45698722 | None:intergenic |
| GCTTCCATAAAGATTAATTC+TGG | 0.347662 | 5.1:-45698980 | MS.gene053765:CDS |
| CTGCCTGCCGCATGGTCCTT+CGG | 0.351513 | 5.1:-45698459 | MS.gene053765:CDS |
| GCCAGAGCCCGTTGGTTGCT+TGG | 0.352804 | 5.1:-45700484 | MS.gene053765:CDS |
| GGAATAAGAGGGATCGAAAT+CGG | 0.355893 | 5.1:+45700582 | None:intergenic |
| TTGGATCAATTGGTGTCAAT+TGG | 0.358806 | 5.1:+45698732 | None:intergenic |
| CAGGCCTACTGCAGCATTGA+TGG | 0.359079 | 5.1:-45700048 | MS.gene053765:CDS |
| TTATTGTTGTTAGCCACATT+TGG | 0.360646 | 5.1:+45699295 | None:intergenic |
| GCTGTTACATTTAGGAAGAA+TGG | 0.369032 | 5.1:-45700520 | MS.gene053765:CDS |
| CGACTTTGCAATTCCTTCAA+TGG | 0.370492 | 5.1:+45698431 | None:intergenic |
| TAAGGATAATGAACATGAAT+GGG | 0.374202 | 5.1:-45697472 | MS.gene053765:CDS |
| AGCATTATATTAGGAAACTT+TGG | 0.376801 | 5.1:+45698713 | None:intergenic |
| TGCATTTCAGCAGGTGCCAC+TGG | 0.380667 | 5.1:+45700549 | None:intergenic |
| TCCAAGCAACCAACGGGCTC+TGG | 0.380922 | 5.1:+45700483 | None:intergenic |
| CCAATTAAACTTAAATGGTT+AGG | 0.381417 | 5.1:+45699049 | None:intergenic |
| TAGATATTGAAGCCCAGTTT+AGG | 0.381496 | 5.1:-45698253 | MS.gene053765:CDS |
| AATTTCAGCCGCTGTTGTAT+TGG | 0.382487 | 5.1:+45697746 | None:intergenic |
| AGCTTTCTCTTAATGCTCTC+TGG | 0.383445 | 5.1:+45698674 | None:intergenic |
| AGTATGATACATCCGCAATA+TGG | 0.383819 | 5.1:+45698297 | None:intergenic |
| TTGAAACACAAGAGGTTTGC+TGG | 0.384270 | 5.1:-45697894 | MS.gene053765:CDS |
| TATAAATTGACATGAACTTT+GGG | 0.384610 | 5.1:+45694627 | None:intergenic |
| AACAATAATGCAGTACTAGA+AGG | 0.388703 | 5.1:-45699280 | MS.gene053765:CDS |
| ATCCCTCTTATTCCGTATAA+TGG | 0.390725 | 5.1:-45700573 | MS.gene053765:CDS |
| ATTGTAACTTTCAGGTCATA+TGG | 0.390899 | 5.1:+45693874 | None:intergenic |
| ATATAAATTGACATGAACTT+TGG | 0.391439 | 5.1:+45694626 | None:intergenic |
| GAAATGGATAACTTCTATAA+GGG | 0.393081 | 5.1:+45699116 | None:intergenic |
| GTCTCTGAAGTTTCAGATGT+TGG | 0.396648 | 5.1:+45693781 | None:intergenic |
| AATTTGGACACTTCTTCATC+TGG | 0.404206 | 5.1:-45697621 | MS.gene053765:CDS |
| TCAATTGAGAAGCTGCCTAA+TGG | 0.405507 | 5.1:-45698338 | MS.gene053765:CDS |
| GAAATATATTTGAAGCAGGT+TGG | 0.406395 | 5.1:-45697342 | MS.gene053765:CDS |
| CCTACTCTATAATTTCCATT+AGG | 0.409718 | 5.1:+45698323 | None:intergenic |
| GGAACATCTGTTCAACCATC+TGG | 0.411320 | 5.1:-45700639 | MS.gene053765:CDS |
| TTAAGTTTAATTGGACTAAC+CGG | 0.412932 | 5.1:-45699040 | MS.gene053765:CDS |
| ATCTTTCTTGTTTATTTCCG+TGG | 0.413462 | 5.1:+45698796 | None:intergenic |
| TCAGAAAATGTACTATTATG+AGG | 0.416405 | 5.1:+45697813 | None:intergenic |
| GCCCAAAGCTGTGCAAGATA+TGG | 0.418277 | 5.1:+45698567 | None:intergenic |
| CAACAGATATTCTCATTTGT+GGG | 0.423007 | 5.1:-45700020 | MS.gene053765:CDS |
| GATGTAAAATGAGTGTATAA+AGG | 0.424441 | 5.1:+45697429 | None:intergenic |
| CACTGAATTCTTATTCTTCG+TGG | 0.426597 | 5.1:+45698772 | None:intergenic |
| TTCCCTTCCAAAAGACCAAC+TGG | 0.428457 | 5.1:-45698899 | MS.gene053765:CDS |
| CGTTGGTTGCTTGGAGTCAT+CGG | 0.430315 | 5.1:-45700475 | MS.gene053765:CDS |
| AGAATCAGACTTTCTTATTG+AGG | 0.431613 | 5.1:-45697784 | MS.gene053765:CDS |
| TTAAGGATAATGAACATGAA+TGG | 0.432396 | 5.1:-45697473 | MS.gene053765:CDS |
| GCATTAAGAGAAAGCTGAAA+AGG | 0.433440 | 5.1:-45698667 | MS.gene053765:CDS |
| TCAACAGATATTCTCATTTG+TGG | 0.433500 | 5.1:-45700021 | MS.gene053765:CDS |
| TCTGCAAGTATTTCAGCGCT+TGG | 0.434028 | 5.1:+45697204 | None:intergenic |
| GGACCATTATACGGAATAAG+AGG | 0.438025 | 5.1:+45700570 | None:intergenic |
| TCCAAATCAGTTGCAGTTGA+AGG | 0.439154 | 5.1:+45698371 | None:intergenic |
| GTTATCCTGTTTGATGAGAA+TGG | 0.439199 | 5.1:-45697840 | MS.gene053765:CDS |
| GAATTAATCTTTATGGAAGC+TGG | 0.439827 | 5.1:+45698983 | None:intergenic |
| GGTGCCACTGGACCATTATA+CGG | 0.443361 | 5.1:+45700561 | None:intergenic |
| CATGCACAAGACATAATTGA+TGG | 0.445356 | 5.1:-45698035 | MS.gene053765:CDS |
| ATGTAAAATGAGTGTATAAA+GGG | 0.446875 | 5.1:+45697430 | None:intergenic |
| ATATATTATGATGAAGTTGA+AGG | 0.448282 | 5.1:-45694015 | MS.gene053765:CDS |
| CTTCTGGATGTAAATCCTGC+TGG | 0.448847 | 5.1:-45698122 | MS.gene053765:CDS |
| TCTTAAACAAAATAGCATCT+AGG | 0.455392 | 5.1:+45698522 | None:intergenic |
| ATGCTGTTGGTGGTGATGAC+GGG | 0.457623 | 5.1:-45693693 | MS.gene053765:CDS |
| GAATAAGAGGGATCGAAATC+GGG | 0.461932 | 5.1:+45700583 | None:intergenic |
| CCAGTAGCACTTCATGCTGT+TGG | 0.463320 | 5.1:-45693706 | MS.gene053765:CDS |
| AGTTCAAGCTTTCATGAAGA+TGG | 0.463433 | 5.1:-45697996 | MS.gene053765:CDS |
| GAAGCAGGTTGGAAAGAAAG+TGG | 0.463794 | 5.1:-45697331 | MS.gene053765:CDS |
| ACACAAGAGGTTTGCTGGAG+GGG | 0.466450 | 5.1:-45697889 | MS.gene053765:CDS |
| TCCTTCGGAGTTACCATTGA+AGG | 0.467580 | 5.1:-45698444 | MS.gene053765:CDS |
| ATGAAATCAACTACGGTTGA+AGG | 0.468795 | 5.1:-45701340 | MS.gene053765:CDS |
| GGATGCCATTCTCATCAAAC+AGG | 0.469046 | 5.1:+45697835 | None:intergenic |
| ATAAAGATTAATTCTGGTAG+TGG | 0.470219 | 5.1:-45698974 | MS.gene053765:CDS |
| CTGCAGAATCTGTTGAATGT+AGG | 0.472906 | 5.1:-45697263 | MS.gene053765:CDS |
| CCAACAGCATGAAGTGCTAC+TGG | 0.474130 | 5.1:+45693706 | None:intergenic |
| AAGATATGGCCCTCAGGAAA+AGG | 0.474207 | 5.1:+45698581 | None:intergenic |
| GTCATCTTAATGTGAAGCAA+TGG | 0.476958 | 5.1:-45698826 | MS.gene053765:CDS |
| CTGCATTGGTCTTGCAGCAT+AGG | 0.478866 | 5.1:+45697524 | None:intergenic |
| AACAAAATAGCATCTAGGTT+CGG | 0.479777 | 5.1:+45698527 | None:intergenic |
| AAGTTTCAGATGTTGGATCA+TGG | 0.479981 | 5.1:+45693788 | None:intergenic |
| TCCATCATTGTTATCACGGC+CGG | 0.480805 | 5.1:+45699021 | None:intergenic |
| GAGAATAATGCAGGCAACAT+TGG | 0.481924 | 5.1:+45698197 | None:intergenic |
| GTTGGTTGCTTGGAGTCATC+GGG | 0.482002 | 5.1:-45700474 | MS.gene053765:CDS |
| TGGCTGCAGCTTTGAAGCAT+AGG | 0.482167 | 5.1:-45697230 | MS.gene053765:CDS |
| AGCTTCCGCACATTAGGTTC+AGG | 0.485135 | 5.1:+45697681 | None:intergenic |
| CTCCTCAATAGTGCAACATC+AGG | 0.485571 | 5.1:+45697708 | None:intergenic |
| AATATTGGATCACTTAATCC+TGG | 0.490304 | 5.1:-45698170 | MS.gene053765:CDS |
| TAGCGTGTCTCCTGAATGCT+CGG | 0.490843 | 5.1:-45700670 | MS.gene053765:CDS |
| CATTAAGAGAAAGCTGAAAA+GGG | 0.491074 | 5.1:-45698666 | MS.gene053765:CDS |
| TTTGTTTGCTACGACGAGAT+CGG | 0.493506 | 5.1:+45701263 | None:intergenic |
| ACTCCGAAGGACCATGCGGC+AGG | 0.495065 | 5.1:+45698456 | None:intergenic |
| TGCCTTCTCAACAGCTTCAA+CGG | 0.495175 | 5.1:+45700371 | None:intergenic |
| TCATCTTAATGTGAAGCAAT+GGG | 0.495820 | 5.1:-45698825 | MS.gene053765:CDS |
| AAATTGATCCTTTGCCATTG+TGG | 0.497217 | 5.1:-45699333 | MS.gene053765:CDS |
| TGAGGAAATATATTTGAAGC+AGG | 0.497370 | 5.1:-45697346 | MS.gene053765:CDS |
| AGCATCTTCTGCATTTCAGC+AGG | 0.499662 | 5.1:+45700540 | None:intergenic |
| TTCAAAGAAGTAATAACATC+AGG | 0.499965 | 5.1:+45697942 | None:intergenic |
| TGCAGAATCTGTTGAATGTA+GGG | 0.500383 | 5.1:-45697262 | MS.gene053765:CDS |
| TAGCTGCACAAATTGTTGAT+TGG | 0.500512 | 5.1:-45698616 | MS.gene053765:CDS |
| CTTCCAAAAGACCAACTGGC+AGG | 0.502607 | 5.1:-45698895 | MS.gene053765:CDS |
| TTCTGGATGTAAATCCTGCT+GGG | 0.503085 | 5.1:-45698121 | MS.gene053765:CDS |
| GATGACTCCAAGCAACCAAC+GGG | 0.503783 | 5.1:+45700477 | None:intergenic |
| AAGGATCGATGGTTGGTGAA+AGG | 0.504018 | 5.1:-45701321 | MS.gene053765:CDS |
| ACCAACTTACCCAAAATAAG+AGG | 0.505293 | 5.1:+45693639 | None:intergenic |
| CCACGTCGAGAGTGTTTAGT+TGG | 0.506402 | 5.1:-45698848 | MS.gene053765:CDS |
| ACTGAATTCTTATTCTTCGT+GGG | 0.507036 | 5.1:+45698773 | None:intergenic |
| GTGCATATAGGAGGGGCAAC+TGG | 0.507079 | 5.1:-45693930 | MS.gene053765:CDS |
| AGCTGTTGAGAAGGCATTGG+AGG | 0.508944 | 5.1:-45700364 | MS.gene053765:intron |
| AGGCCTACTGCAGCATTGAT+GGG | 0.511542 | 5.1:-45700047 | MS.gene053765:CDS |
| TGTGGAGAAGATGTGTTTGT+TGG | 0.512505 | 5.1:-45698930 | MS.gene053765:CDS |
| AAGCAGGTTGGAAAGAAAGT+GGG | 0.513449 | 5.1:-45697330 | MS.gene053765:CDS |
| ATAAGTATATCATAAAGCAC+AGG | 0.518529 | 5.1:+45697549 | None:intergenic |
| TGTATCATACTTTGTTCTAC+CGG | 0.519671 | 5.1:-45698285 | MS.gene053765:CDS |
| CTGGGGATGTTGTAGACCGT+TGG | 0.525017 | 5.1:-45698103 | MS.gene053765:CDS |
| CAGACTTACAGATCTATTCT+GGG | 0.526056 | 5.1:+45699990 | None:intergenic |
| CTTCATCTGGTCATATCCGT+TGG | 0.526731 | 5.1:-45697608 | MS.gene053765:CDS |
| ATCGAAATCGGGTCATCACT+TGG | 0.528007 | 5.1:+45700594 | None:intergenic |
| CTAATAAGCGTGCATATAGG+AGG | 0.530543 | 5.1:-45693939 | MS.gene053765:CDS |
| GGCTGCAGCTTTGAAGCATA+GGG | 0.532481 | 5.1:-45697229 | MS.gene053765:CDS |
| GAGAATTATGAAATCAACTA+CGG | 0.532742 | 5.1:-45701347 | None:intergenic |
| CGAAGGACCATGCGGCAGGC+AGG | 0.533059 | 5.1:+45698460 | None:intergenic |
| ATCCTGATGTTGCACTATTG+AGG | 0.534891 | 5.1:-45697710 | MS.gene053765:CDS |
| AATGCTAGTCGATCCACTCC+AGG | 0.535352 | 5.1:+45698152 | None:intergenic |
| TGAAGCTGTTGAGAAGGCAT+TGG | 0.535544 | 5.1:-45700367 | MS.gene053765:CDS |
| AATTACAGAAGCTCATGTCT+TGG | 0.536408 | 5.1:-45699172 | MS.gene053765:CDS |
| ACCGGCCGTGATAACAATGA+TGG | 0.537150 | 5.1:-45699022 | MS.gene053765:CDS |
| TAACATCAGGCCAACCAAAA+CGG | 0.539935 | 5.1:+45697955 | None:intergenic |
| CATGCTGTTGGTGGTGATGA+CGG | 0.540240 | 5.1:-45693694 | MS.gene053765:CDS |
| TCAAAATGATGCAACAGAAG+TGG | 0.542131 | 5.1:-45693839 | MS.gene053765:CDS |
| GGATGCTATTGTATCTGATA+CGG | 0.544621 | 5.1:-45693818 | MS.gene053765:CDS |
| ATATCTGCATACCGACGTAA+AGG | 0.546912 | 5.1:+45697405 | None:intergenic |
| ATGCAGATATTGTTGTTCAT+CGG | 0.551109 | 5.1:-45697392 | MS.gene053765:CDS |
| GGTTTGCTGGAGGGGCTCTA+CGG | 0.551610 | 5.1:-45697881 | MS.gene053765:CDS |
| GCTCTGTCCTGCCTGCCGCA+TGG | 0.552145 | 5.1:-45698467 | MS.gene053765:CDS |
| CTTACAGATCTATTCTGGGC+TGG | 0.555191 | 5.1:+45699994 | None:intergenic |
| TCAATATCTAAAGCTGTGTC+CGG | 0.555376 | 5.1:+45698266 | None:intergenic |
| GAAGCAAGAGTATTAGGACT+AGG | 0.555848 | 5.1:-45694650 | MS.gene053765:CDS |
| CAGAAAATGTACTATTATGA+GGG | 0.555848 | 5.1:+45697814 | None:intergenic |
| CAATTGTGAAGGAATAGAAA+AGG | 0.555959 | 5.1:-45699218 | MS.gene053765:CDS |
| CTGTGCAAGATATGGCCCTC+AGG | 0.558397 | 5.1:+45698575 | None:intergenic |
| GCTAGCTAGTAAAATTGTTG+AGG | 0.559691 | 5.1:-45697154 | MS.gene053765:CDS |
| AGCGTGTCTCCTGAATGCTC+GGG | 0.559972 | 5.1:-45700669 | MS.gene053765:CDS |
| GTAGCACTTCATGCTGTTGG+TGG | 0.560286 | 5.1:-45693703 | MS.gene053765:CDS |
| AACACTTGTTGACCTAAACT+GGG | 0.560791 | 5.1:+45698241 | None:intergenic |
| GATGTTGTAGACCGTTGGAT+TGG | 0.561622 | 5.1:-45698098 | MS.gene053765:CDS |
| GTCCGTTGAAGCTGTTGAGA+AGG | 0.565147 | 5.1:-45700373 | MS.gene053765:CDS |
| GTTTCTCCTGAAGCAGAAGA+AGG | 0.566010 | 5.1:-45697106 | MS.gene053765:intron |
| ATCTTGCACAGCTTTGGGCG+AGG | 0.566105 | 5.1:-45698563 | MS.gene053765:CDS |
| GGGTGGTTGCTGTTATTGAG+AGG | 0.567940 | 5.1:-45698874 | MS.gene053765:CDS |
| AACACAAGAGGTTTGCTGGA+GGG | 0.569580 | 5.1:-45697890 | MS.gene053765:CDS |
| TGCTGCAATTGAGAAGGATC+TGG | 0.569734 | 5.1:-45698639 | MS.gene053765:CDS |
| CTCGTGGAAGACAATATAGC+GGG | 0.573288 | 5.1:-45699247 | MS.gene053765:CDS |
| AAGTAAGACGCCGACTGCAT+TGG | 0.575674 | 5.1:+45697510 | None:intergenic |
| CTCCTAATAAGCGTGCATAT+AGG | 0.575808 | 5.1:-45693942 | MS.gene053765:CDS |
| CTCATGTCTTGGTCAAAACA+AGG | 0.578931 | 5.1:-45699161 | MS.gene053765:CDS |
| CATATAGGAGGGGCAACTGG+AGG | 0.580312 | 5.1:-45693927 | MS.gene053765:CDS |
| CAAAATTCGCCAGAGCCCGT+TGG | 0.580396 | 5.1:-45700492 | MS.gene053765:CDS |
| CCTAATGGAAATTATAGAGT+AGG | 0.581510 | 5.1:-45698323 | MS.gene053765:CDS |
| CTATATTGTCTTCCACGAGA+AGG | 0.582567 | 5.1:+45699251 | None:intergenic |
| GATGGCTATCCTAAATTACA+TGG | 0.583699 | 5.1:-45697978 | MS.gene053765:CDS |
| CGATGACTCCAAGCAACCAA+CGG | 0.585743 | 5.1:+45700476 | None:intergenic |
| ATATAGGAGGGGCAACTGGA+GGG | 0.587859 | 5.1:-45693926 | MS.gene053765:CDS |
| GAGGTCCATCATTGTTATCA+CGG | 0.589098 | 5.1:+45699017 | None:intergenic |
| GAATGTTCTGTGCAGGTGGA+AGG | 0.589401 | 5.1:-45699373 | MS.gene053765:intron |
| TAATAAGCGTGCATATAGGA+GGG | 0.589924 | 5.1:-45693938 | MS.gene053765:CDS |
| CCACATGTAAACTCTCTCAC+AGG | 0.590573 | 5.1:+45697128 | None:intergenic |
| GCAGATGAAGGAAAAGCTCA+AGG | 0.592003 | 5.1:-45697577 | MS.gene053765:CDS |
| CGGTCTACAACATCCCCAGC+AGG | 0.593999 | 5.1:+45698107 | None:intergenic |
| TCCTTCAATGGTAACTCCGA+AGG | 0.597542 | 5.1:+45698443 | None:intergenic |
| TTCCAAAAGACCAACTGGCA+GGG | 0.598053 | 5.1:-45698894 | MS.gene053765:CDS |
| GAAAGAAGATGCACAGTGAG+TGG | 0.600341 | 5.1:+45693736 | None:intergenic |
| AACAGATATTCTCATTTGTG+GGG | 0.600421 | 5.1:-45700019 | MS.gene053765:CDS |
| TTATGAGAATAATACTACAC+AGG | 0.604470 | 5.1:-45699077 | MS.gene053765:CDS |
| GCGGGAGATAACAATTGTGA+AGG | 0.606932 | 5.1:-45699229 | MS.gene053765:CDS |
| ATATGACCTGAAAGTTACAA+TGG | 0.606990 | 5.1:-45693872 | MS.gene053765:CDS |
| GGGTGATGCTGCAATTGAGA+AGG | 0.608133 | 5.1:-45698645 | MS.gene053765:CDS |
| AAATGGATAACTTCTATAAG+GGG | 0.614108 | 5.1:+45699117 | None:intergenic |
| AGCCTCACTCCAAAATCAAG+AGG | 0.614691 | 5.1:+45693670 | None:intergenic |
| TCATCTGCTCTAAGGACCAA+CGG | 0.615095 | 5.1:+45697592 | None:intergenic |
| AACTACGGTTGAAGGATCGA+TGG | 0.616946 | 5.1:-45701332 | MS.gene053765:CDS |
| TCGGCGTCTTACTTCTGTAG+TGG | 0.617240 | 5.1:-45697501 | MS.gene053765:CDS |
| AGAAGGTTGTAACCTTCTCG+TGG | 0.617457 | 5.1:-45699263 | MS.gene053765:CDS |
| TTGGTCCTTAGAGCAGATGA+AGG | 0.617507 | 5.1:-45697589 | MS.gene053765:CDS |
| CCTGTGAGAGAGTTTACATG+TGG | 0.618066 | 5.1:-45697128 | MS.gene053765:CDS |
| TGCTGCAAGACCAATGCAGT+CGG | 0.619302 | 5.1:-45697520 | MS.gene053765:CDS |
| ACAGCAACCACCCTGCCAGT+TGG | 0.621109 | 5.1:+45698884 | None:intergenic |
| TAGAGTAGGCATCCATATTG+CGG | 0.625947 | 5.1:-45698309 | MS.gene053765:CDS |
| AGGATTTACATCCAGAAGCA+TGG | 0.626949 | 5.1:+45698127 | None:intergenic |
| ACGGTTGAAGGATCGATGGT+TGG | 0.627284 | 5.1:-45701328 | MS.gene053765:CDS |
| GGCCTACTGCAGCATTGATG+GGG | 0.627511 | 5.1:-45700046 | MS.gene053765:CDS |
| GTTGTGAGCATTCACACGAA+AGG | 0.629428 | 5.1:+45700206 | None:intergenic |
| TGGATCACTTAATCCTGGAG+TGG | 0.630780 | 5.1:-45698165 | MS.gene053765:CDS |
| TGGATAACTTCTATAAGGGG+AGG | 0.635477 | 5.1:+45699120 | None:intergenic |
| TCTGGATGTAAATCCTGCTG+GGG | 0.635670 | 5.1:-45698120 | MS.gene053765:CDS |
| GGTTGGTGAAAGGTTTGATG+AGG | 0.636336 | 5.1:-45701311 | MS.gene053765:CDS |
| AACTAATGAAAAGAAAGACT+CGG | 0.638047 | 5.1:-45700451 | MS.gene053765:CDS |
| AAGGATAATGAACATGAATG+GGG | 0.642510 | 5.1:-45697471 | MS.gene053765:CDS |
| AGCATGAAGTGCTACTGGAA+TGG | 0.644297 | 5.1:+45693711 | None:intergenic |
| GACCATTATACGGAATAAGA+GGG | 0.644480 | 5.1:+45700571 | None:intergenic |
| TGGATCTGTTAGCAATTCAG+TGG | 0.652281 | 5.1:-45700619 | MS.gene053765:CDS |
| TACCCCATCAATGCTGCAGT+AGG | 0.653152 | 5.1:+45700044 | None:intergenic |
| AATAAGCGTGCATATAGGAG+GGG | 0.653960 | 5.1:-45693937 | MS.gene053765:CDS |
| AAACACAAGAGGTTTGCTGG+AGG | 0.655584 | 5.1:-45697891 | MS.gene053765:CDS |
| TGAATGGGGTCATTATGCAC+TGG | 0.657861 | 5.1:-45697457 | MS.gene053765:CDS |
| ACAGCTTCAACGGACCAATG+TGG | 0.660782 | 5.1:+45700381 | None:intergenic |
| TATGAGAATAATACTACACA+GGG | 0.662420 | 5.1:-45699076 | MS.gene053765:CDS |
| GCGTGTCTCCTGAATGCTCG+GGG | 0.666148 | 5.1:-45700668 | MS.gene053765:CDS |
| CAAAAGACCAACTGGCAGGG+TGG | 0.669616 | 5.1:-45698891 | MS.gene053765:CDS |
| CCAACTAAACACTCTCGACG+TGG | 0.672056 | 5.1:+45698848 | None:intergenic |
| TAACAGTACGACCAATCCAA+CGG | 0.673855 | 5.1:+45698087 | None:intergenic |
| GAGTGAAGTTATGAATGCTG+TGG | 0.675167 | 5.1:-45698948 | MS.gene053765:CDS |
| AGACATGCTAAGCACCAATG+TGG | 0.675713 | 5.1:+45693963 | None:intergenic |
| ACTAGCTACGATAGAAGCTG+AGG | 0.676060 | 5.1:-45697364 | MS.gene053765:CDS |
| ATTAAGAGAAAGCTGAAAAG+GGG | 0.678057 | 5.1:-45698665 | MS.gene053765:CDS |
| GACATCCTGAACCTAATGTG+CGG | 0.681729 | 5.1:-45697686 | MS.gene053765:CDS |
| TTGAAGGTTTGACTGCAGAG+TGG | 0.685438 | 5.1:-45693999 | MS.gene053765:CDS |
| TAAGTATATCATAAAGCACA+GGG | 0.688722 | 5.1:+45697550 | None:intergenic |
| AGAATCTGTTGAATGTAGGG+AGG | 0.691777 | 5.1:-45697259 | MS.gene053765:CDS |
| TCTCGTGGAAGACAATATAG+CGG | 0.708500 | 5.1:-45699248 | MS.gene053765:CDS |
| GCTTGATGCAACATCCACAT+TGG | 0.710146 | 5.1:-45693977 | MS.gene053765:CDS |
| TATTCCGTATAATGGTCCAG+TGG | 0.718049 | 5.1:-45700565 | MS.gene053765:CDS |
| GGTAACTCCGAAGGACCATG+CGG | 0.728337 | 5.1:+45698452 | None:intergenic |
| GAATTGCTAACAGATCCAGA+TGG | 0.736468 | 5.1:+45700624 | None:intergenic |
| GAATGCTCACAACAGAACTG+AGG | 0.754337 | 5.1:-45700196 | MS.gene053765:intron |
| GAAGCTGGTGAATCACAGTG+AGG | 0.777531 | 5.1:+45698998 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 45693645 | 45701362 | 45693645 | ID=MS.gene053765 |
| chr5.1 | mRNA | 45693645 | 45701362 | 45693645 | ID=MS.gene053765.t1;Parent=MS.gene053765 |
| chr5.1 | exon | 45701275 | 45701362 | 45701275 | ID=MS.gene053765.t1.exon1;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45701275 | 45701362 | 45701275 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45700365 | 45700714 | 45700365 | ID=MS.gene053765.t1.exon2;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45700365 | 45700714 | 45700365 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45700197 | 45700250 | 45700197 | ID=MS.gene053765.t1.exon3;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45700197 | 45700250 | 45700197 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45699999 | 45700067 | 45699999 | ID=MS.gene053765.t1.exon4;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45699999 | 45700067 | 45699999 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45697107 | 45699380 | 45697107 | ID=MS.gene053765.t1.exon5;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45697107 | 45699380 | 45697107 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45694613 | 45694684 | 45694613 | ID=MS.gene053765.t1.exon6;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45694613 | 45694684 | 45694613 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| chr5.1 | exon | 45693645 | 45694049 | 45693645 | ID=MS.gene053765.t1.exon7;Parent=MS.gene053765.t1 |
| chr5.1 | CDS | 45693645 | 45694049 | 45693645 | ID=cds.MS.gene053765.t1;Parent=MS.gene053765.t1 |
| Gene Sequence |
| Protein sequence |