Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77080.t1 | XP_003598777.1 | 77.7 | 677 | 126 | 4 | 1 | 654 | 1 | 675 | 7.90E-252 | 879.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77080.t1 | A0A1P8BH59 | 62.9 | 70 | 26 | 0 | 561 | 630 | 1414 | 1483 | 4.9e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77080.t1 | G7IW85 | 77.7 | 677 | 126 | 4 | 1 | 654 | 1 | 675 | 5.7e-252 | 879.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene77080 | 0.849142 | 3.91E-60 | -1.69E-46 |
| MS.gene049350 | MS.gene77080 | 0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene77080 | 0.814857 | 1.24E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene77080 | 0.80441 | 2.19E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene77080 | 0.804915 | 1.72E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene77080 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene77080 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene77080 | 0.823163 | 1.61E-53 | -1.69E-46 |
| MS.gene051184 | MS.gene77080 | 0.806055 | 9.91E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene77080 | 0.83781 | 4.17E-57 | -1.69E-46 |
| MS.gene052463 | MS.gene77080 | 0.804326 | 2.28E-49 | -1.69E-46 |
| MS.gene052518 | MS.gene77080 | 0.802939 | 4.42E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene77080 | 0.81871 | 1.70E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene77080 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene053765 | MS.gene77080 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene77080 | 0.828896 | 6.97E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene77080 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene77080 | 0.810563 | 1.08E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene77080 | 0.809075 | 2.26E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene77080 | 0.815153 | 1.07E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene77080 | 0.815788 | 7.73E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene77080 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene059144 | MS.gene77080 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene77080 | 0.819202 | 1.31E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene77080 | 0.818627 | 1.78E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene77080 | 0.818882 | 1.55E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene77080 | 0.826535 | 2.57E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene77080 | 0.813918 | 2.01E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene77080 | 0.809546 | 1.79E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene77080 | 0.831669 | 1.46E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene77080 | 0.826878 | 2.13E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene77080 | 0.845007 | 5.31E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene77080 | 0.805676 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77080.t1 | MTR_3g020820 | 88.331 | 677 | 54 | 4 | 1 | 654 | 1 | 675 | 0.0 | 1142 |
| MS.gene77080.t1 | MTR_4g071030 | 37.080 | 774 | 321 | 28 | 1 | 653 | 1 | 729 | 8.54e-104 | 332 |
| MS.gene77080.t1 | MTR_7g090500 | 68.919 | 74 | 23 | 0 | 559 | 632 | 1225 | 1298 | 9.09e-26 | 114 |
| MS.gene77080.t1 | MTR_7g090500 | 41.379 | 174 | 86 | 5 | 81 | 240 | 41 | 212 | 1.15e-25 | 113 |
| MS.gene77080.t1 | MTR_7g090500 | 49.438 | 89 | 43 | 1 | 544 | 632 | 798 | 884 | 1.44e-16 | 84.7 |
| MS.gene77080.t1 | MTR_7g090500 | 49.438 | 89 | 43 | 1 | 544 | 632 | 450 | 536 | 1.27e-15 | 81.6 |
| MS.gene77080.t1 | MTR_7g075800 | 47.000 | 100 | 46 | 3 | 150 | 243 | 390 | 488 | 1.17e-14 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77080.t1 | AT2G38800 | 48.087 | 183 | 71 | 6 | 73 | 246 | 53 | 220 | 1.56e-35 | 142 |
| MS.gene77080.t1 | AT3G54570 | 57.647 | 85 | 31 | 1 | 549 | 633 | 338 | 417 | 2.64e-22 | 100 |
| MS.gene77080.t1 | AT3G54570 | 31.962 | 316 | 120 | 16 | 78 | 383 | 36 | 266 | 2.47e-20 | 94.4 |
| MS.gene77080.t1 | AT5G04020 | 45.385 | 130 | 62 | 4 | 508 | 630 | 1356 | 1483 | 2.14e-20 | 97.1 |
| MS.gene77080.t1 | AT5G04020 | 44.828 | 87 | 46 | 1 | 544 | 630 | 1145 | 1229 | 3.74e-16 | 83.6 |
| MS.gene77080.t1 | AT5G04020 | 48.611 | 72 | 27 | 1 | 571 | 632 | 521 | 592 | 4.81e-12 | 70.1 |
| MS.gene77080.t1 | AT5G04020 | 45.385 | 130 | 62 | 4 | 508 | 630 | 1356 | 1483 | 2.14e-20 | 97.1 |
| MS.gene77080.t1 | AT5G04020 | 44.828 | 87 | 46 | 1 | 544 | 630 | 1145 | 1229 | 3.74e-16 | 83.6 |
| MS.gene77080.t1 | AT5G04020 | 48.611 | 72 | 27 | 1 | 571 | 632 | 521 | 592 | 4.81e-12 | 70.1 |
Find 84 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAAGACTACTAGCTTTA+AGG | 0.115739 | 3.3:+13040096 | MS.gene77080:CDS |
| TATACTTATTGTTCTCTTAA+TGG | 0.173869 | 3.3:+13040259 | MS.gene77080:CDS |
| CTTGTTGGCTTCATGTAATT+TGG | 0.232774 | 3.3:-13039914 | None:intergenic |
| ATATATGATTTCTTCTGATT+TGG | 0.267692 | 3.3:-13040935 | None:intergenic |
| AATCTATGGTAATGAGTTAA+AGG | 0.296459 | 3.3:+13040492 | MS.gene77080:CDS |
| GATTTCTTCATTGAAATCTA+TGG | 0.300238 | 3.3:+13040478 | MS.gene77080:CDS |
| CTCAAATGTGACTCACATTT+CGG | 0.308185 | 3.3:-13041522 | None:intergenic |
| TCATCTAATCAACACTTAGA+TGG | 0.308895 | 3.3:+13039719 | MS.gene77080:CDS |
| TTTGCATGTGAACTGCTTGT+TGG | 0.325066 | 3.3:-13039929 | None:intergenic |
| AAGATCAACTAGTTTGAGTT+TGG | 0.327392 | 3.3:+13040063 | MS.gene77080:CDS |
| AGCAATGAGACTCAAGAAAT+TGG | 0.343887 | 3.3:+13040979 | MS.gene77080:CDS |
| GGAAGGAAATTCGGCTCTCT+TGG | 0.353997 | 3.3:-13041324 | None:intergenic |
| TGTTATCATCTTCGTTCTCT+TGG | 0.355060 | 3.3:-13041098 | None:intergenic |
| CTCAACCTCTTCGAGAAAAT+CGG | 0.377921 | 3.3:-13040551 | None:intergenic |
| TCACATTTGAGAAATAAATC+AGG | 0.398747 | 3.3:+13041534 | MS.gene77080:CDS |
| GGTACTAATGGAAGGAAATT+CGG | 0.412268 | 3.3:-13041333 | None:intergenic |
| AGAGAAAGAATGCAGAGGAT+TGG | 0.414057 | 3.3:+13041403 | MS.gene77080:CDS |
| CGTGATGAAGAACAATGTTA+TGG | 0.418891 | 3.3:+13040769 | MS.gene77080:CDS |
| GTCTCATGAAGAAATGAGTA+TGG | 0.420379 | 3.3:+13040693 | MS.gene77080:CDS |
| ATGTAATTTGGTGAACCATC+TGG | 0.422170 | 3.3:-13039902 | None:intergenic |
| GCCACTTTCTTCTTCCTAGC+AGG | 0.425788 | 3.3:-13041468 | None:intergenic |
| CTGATTTAACATGTTCAACT+TGG | 0.428731 | 3.3:-13039664 | None:intergenic |
| TCTTCAATCTTCACCTTCAT+CGG | 0.432703 | 3.3:+13039814 | MS.gene77080:CDS |
| TTAAAGGATGCAAAATCAAC+AGG | 0.436041 | 3.3:+13040508 | MS.gene77080:CDS |
| TTCCACCAGGATTAAGCATA+AGG | 0.448625 | 3.3:-13040198 | None:intergenic |
| CCTGGTGGAACTGAGTTAGA+AGG | 0.450702 | 3.3:+13040211 | MS.gene77080:CDS |
| CCCTCGTGGTCGAAGATTGA+AGG | 0.451781 | 3.3:+13040372 | MS.gene77080:CDS |
| AGAAGGAACTTCAGTTATGA+AGG | 0.453073 | 3.3:+13040228 | MS.gene77080:CDS |
| TTTCATTTGCCAGTGAAGAT+TGG | 0.453936 | 3.3:-13041029 | None:intergenic |
| TTCATCACGCTCGATATCTT+CGG | 0.455936 | 3.3:-13040755 | None:intergenic |
| AGGATCGGAAAGGTGTGATT+AGG | 0.463553 | 3.3:+13041250 | MS.gene77080:CDS |
| ATCAAAGATATTCAAGATCA+AGG | 0.463943 | 3.3:+13041174 | MS.gene77080:CDS |
| GTCGAACTCGGAACCGATGA+AGG | 0.468703 | 3.3:-13039827 | None:intergenic |
| AGAAAGGTTTCAAGCAAGCT+TGG | 0.482157 | 3.3:+13039638 | MS.gene77080:CDS |
| GAAAATGATGGCATAGAAGT+AGG | 0.489902 | 3.3:+13040604 | MS.gene77080:CDS |
| AAGTCTACAATTGAAAATGA+TGG | 0.493297 | 3.3:+13040592 | MS.gene77080:CDS |
| TCATACCTTATGCTTAATCC+TGG | 0.495217 | 3.3:+13040193 | MS.gene77080:CDS |
| ATGGCAGTTTCATCATATGA+AGG | 0.496697 | 3.3:-13040454 | None:intergenic |
| AAAAGGAAAAGGTTGATTTG+AGG | 0.499438 | 3.3:+13041364 | MS.gene77080:CDS |
| AAGCAGTTCACATGCAAAGA+AGG | 0.509530 | 3.3:+13039934 | MS.gene77080:CDS |
| ATGAAGATCATCAAACTAGT+TGG | 0.510043 | 3.3:+13040671 | MS.gene77080:CDS |
| TGATTTGAGGCATCAAATGA+TGG | 0.510884 | 3.3:+13041377 | MS.gene77080:CDS |
| GAATTATTTGATGTGCTTGA+AGG | 0.511571 | 3.3:+13041147 | MS.gene77080:CDS |
| TTCAAATGCTACATGTAGAA+AGG | 0.515350 | 3.3:+13040024 | MS.gene77080:CDS |
| AAAGAATGCAGAGGATTGGA+TGG | 0.516505 | 3.3:+13041407 | MS.gene77080:CDS |
| CCTTCTAACTCAGTTCCACC+AGG | 0.518876 | 3.3:-13040211 | None:intergenic |
| GGTCGAAGATTGAAGGCTAC+TGG | 0.519739 | 3.3:+13040379 | MS.gene77080:CDS |
| CACATTTGAGAAATAAATCA+GGG | 0.525034 | 3.3:+13041535 | MS.gene77080:CDS |
| GGATTAAGCATAAGGTATGA+AGG | 0.549187 | 3.3:-13040190 | None:intergenic |
| CAAAAGCTGTATCAGTTACA+TGG | 0.549292 | 3.3:+13040848 | MS.gene77080:CDS |
| TTTCGGTATTACAGTTTCGA+AGG | 0.554157 | 3.3:-13041505 | None:intergenic |
| TTCTTCTGTTTACACAGATG+AGG | 0.559779 | 3.3:+13040816 | MS.gene77080:CDS |
| AGAAGTAGGATTTCTGAAAG+AGG | 0.564339 | 3.3:+13040618 | MS.gene77080:CDS |
| AATCAAGCTTTCTGATCTTG+AGG | 0.564641 | 3.3:+13039790 | MS.gene77080:CDS |
| AAGGTGTGATTAGGCGAAAG+AGG | 0.566828 | 3.3:+13041259 | MS.gene77080:CDS |
| TACCTTATGCTTAATCCTGG+TGG | 0.569094 | 3.3:+13040196 | MS.gene77080:CDS |
| CGGTTGCTACCAATCTTCAC+TGG | 0.571016 | 3.3:+13041020 | MS.gene77080:CDS |
| AATAAATCAGGGTTTGCTCA+TGG | 0.575044 | 3.3:+13041546 | MS.gene77080:CDS |
| GATATTCAAGATCAAGGCAA+AGG | 0.578665 | 3.3:+13041180 | MS.gene77080:CDS |
| TGTCATCATAATAGCTGCTG+AGG | 0.582227 | 3.3:-13040882 | None:intergenic |
| GAAGACATAAAAGTCTTCAA+AGG | 0.584823 | 3.3:-13040307 | None:intergenic |
| TTCATATGATGAAACTGCCA+TGG | 0.585852 | 3.3:+13040456 | MS.gene77080:CDS |
| TCTGGTGCTGTTCTCACCAA+GGG | 0.585920 | 3.3:-13039884 | None:intergenic |
| TTGGTAGCAACCGATGTCAT+CGG | 0.589354 | 3.3:-13041010 | None:intergenic |
| TGAACAAGCTTGCTCCTGCT+AGG | 0.594927 | 3.3:+13041454 | MS.gene77080:CDS |
| GACATAAAAGTCTTCAAAGG+AGG | 0.599107 | 3.3:-13040304 | None:intergenic |
| AGGAAAACACAAGAGAGGAT+CGG | 0.605105 | 3.3:+13041235 | MS.gene77080:CDS |
| GGTTACTCCTCCGATGACAT+CGG | 0.610168 | 3.3:+13041000 | MS.gene77080:CDS |
| ATGAAGATGATGATGAAATG+AGG | 0.611983 | 3.3:+13041292 | MS.gene77080:CDS |
| CGAAGAGGTTGAGGATCATG+AGG | 0.612257 | 3.3:+13040561 | MS.gene77080:CDS |
| GCCTTCAATCTTCGACCACG+AGG | 0.619143 | 3.3:-13040373 | None:intergenic |
| ATCTGGTGCTGTTCTCACCA+AGG | 0.623762 | 3.3:-13039885 | None:intergenic |
| GGAAGATGTTTACAATAACA+TGG | 0.625593 | 3.3:+13040714 | MS.gene77080:CDS |
| TCCTGCTAGGAAGAAGAAAG+TGG | 0.632688 | 3.3:+13041467 | MS.gene77080:CDS |
| GGATGAGAGAAAGAATGCAG+AGG | 0.637454 | 3.3:+13041398 | MS.gene77080:CDS |
| GATTTCAATGAAGAAATCCA+TGG | 0.638428 | 3.3:-13040473 | None:intergenic |
| CTCGAAGCTCTGAGCCCTCG+TGG | 0.643179 | 3.3:+13040358 | MS.gene77080:CDS |
| TTGGTGAGAACAGCACCAGA+TGG | 0.646217 | 3.3:+13039887 | MS.gene77080:CDS |
| AGATGATAACATCAATAGAG+AGG | 0.648755 | 3.3:+13041110 | MS.gene77080:CDS |
| GTAGCAACCGATGTCATCGG+AGG | 0.692341 | 3.3:-13041007 | None:intergenic |
| CCTTCAATCTTCGACCACGA+GGG | 0.692597 | 3.3:-13040372 | None:intergenic |
| TGACGAGGAAAACACAAGAG+AGG | 0.693340 | 3.3:+13041230 | MS.gene77080:CDS |
| AAGTTGCGTAGTTGATGACG+AGG | 0.694585 | 3.3:+13041215 | MS.gene77080:CDS |
| AACACAAGAGAGGATCGGAA+AGG | 0.700147 | 3.3:+13041240 | MS.gene77080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATGATTTCTTCTGATT+TGG | - | chr3.3:13040938-13040957 | None:intergenic | 20.0% |
| !! | TATACTTATTGTTCTCTTAA+TGG | + | chr3.3:13040259-13040278 | MS.gene77080:CDS | 20.0% |
| !!! | ATATGAAGGTTTTAAATCAA+AGG | - | chr3.3:13040443-13040462 | None:intergenic | 20.0% |
| ! | AAGTCTACAATTGAAAATGA+TGG | + | chr3.3:13040592-13040611 | MS.gene77080:CDS | 25.0% |
| ! | ATCAAAGATATTCAAGATCA+AGG | + | chr3.3:13041174-13041193 | MS.gene77080:CDS | 25.0% |
| ! | ATTAGTACCTGAAAAAGAAA+AGG | + | chr3.3:13041347-13041366 | MS.gene77080:CDS | 25.0% |
| ! | CACATTTGAGAAATAAATCA+GGG | + | chr3.3:13041535-13041554 | MS.gene77080:CDS | 25.0% |
| ! | GATTTCTTCATTGAAATCTA+TGG | + | chr3.3:13040478-13040497 | MS.gene77080:CDS | 25.0% |
| ! | TATCTTGAAGAAGCAAAAAT+TGG | + | chr3.3:13040955-13040974 | MS.gene77080:CDS | 25.0% |
| ! | TCACATTTGAGAAATAAATC+AGG | + | chr3.3:13041534-13041553 | MS.gene77080:CDS | 25.0% |
| !! | AATCTATGGTAATGAGTTAA+AGG | + | chr3.3:13040492-13040511 | MS.gene77080:CDS | 25.0% |
| !!! | TTTTCTTTTTCAGGTACTAA+TGG | - | chr3.3:13041348-13041367 | None:intergenic | 25.0% |
| ACCTGAAAAAGAAAAGGAAA+AGG | + | chr3.3:13041353-13041372 | MS.gene77080:CDS | 30.0% | |
| AGATGATAACATCAATAGAG+AGG | + | chr3.3:13041110-13041129 | MS.gene77080:CDS | 30.0% | |
| AGTCTTAGAAAAACTCAATC+TGG | + | chr3.3:13039971-13039990 | MS.gene77080:CDS | 30.0% | |
| ATGAAGATCATCAAACTAGT+TGG | + | chr3.3:13040671-13040690 | MS.gene77080:CDS | 30.0% | |
| CTGATTTAACATGTTCAACT+TGG | - | chr3.3:13039667-13039686 | None:intergenic | 30.0% | |
| GAAGACATAAAAGTCTTCAA+AGG | - | chr3.3:13040310-13040329 | None:intergenic | 30.0% | |
| GAATTATTTGATGTGCTTGA+AGG | + | chr3.3:13041147-13041166 | MS.gene77080:CDS | 30.0% | |
| GATTTCAATGAAGAAATCCA+TGG | - | chr3.3:13040476-13040495 | None:intergenic | 30.0% | |
| GGAAGATGTTTACAATAACA+TGG | + | chr3.3:13040714-13040733 | MS.gene77080:CDS | 30.0% | |
| TCATCTAATCAACACTTAGA+TGG | + | chr3.3:13039719-13039738 | MS.gene77080:CDS | 30.0% | |
| TTAAAGGATGCAAAATCAAC+AGG | + | chr3.3:13040508-13040527 | MS.gene77080:CDS | 30.0% | |
| TTCAAATGCTACATGTAGAA+AGG | + | chr3.3:13040024-13040043 | MS.gene77080:CDS | 30.0% | |
| ! | AAGATCAACTAGTTTGAGTT+TGG | + | chr3.3:13040063-13040082 | MS.gene77080:CDS | 30.0% |
| ! | ACCTTTTCCTTTTCTTTTTC+AGG | - | chr3.3:13041357-13041376 | None:intergenic | 30.0% |
| ! | ATGAAGATGATGATGAAATG+AGG | + | chr3.3:13041292-13041311 | MS.gene77080:CDS | 30.0% |
| !! | AAAAGGAAAAGGTTGATTTG+AGG | + | chr3.3:13041364-13041383 | MS.gene77080:CDS | 30.0% |
| AATCAAGCTTTCTGATCTTG+AGG | + | chr3.3:13039790-13039809 | MS.gene77080:CDS | 35.0% | |
| AGAAGGAACTTCAGTTATGA+AGG | + | chr3.3:13040228-13040247 | MS.gene77080:CDS | 35.0% | |
| AGCAATGAGACTCAAGAAAT+TGG | + | chr3.3:13040979-13040998 | MS.gene77080:CDS | 35.0% | |
| ATGGCAGTTTCATCATATGA+AGG | - | chr3.3:13040457-13040476 | None:intergenic | 35.0% | |
| CAAAAGCTGTATCAGTTACA+TGG | + | chr3.3:13040848-13040867 | MS.gene77080:CDS | 35.0% | |
| CGTGATGAAGAACAATGTTA+TGG | + | chr3.3:13040769-13040788 | MS.gene77080:CDS | 35.0% | |
| CTCAAATGTGACTCACATTT+CGG | - | chr3.3:13041525-13041544 | None:intergenic | 35.0% | |
| GAAAATGATGGCATAGAAGT+AGG | + | chr3.3:13040604-13040623 | MS.gene77080:CDS | 35.0% | |
| GACATAAAAGTCTTCAAAGG+AGG | - | chr3.3:13040307-13040326 | None:intergenic | 35.0% | |
| GATATTCAAGATCAAGGCAA+AGG | + | chr3.3:13041180-13041199 | MS.gene77080:CDS | 35.0% | |
| GGATTAAGCATAAGGTATGA+AGG | - | chr3.3:13040193-13040212 | None:intergenic | 35.0% | |
| GGTACTAATGGAAGGAAATT+CGG | - | chr3.3:13041336-13041355 | None:intergenic | 35.0% | |
| GTCTCATGAAGAAATGAGTA+TGG | + | chr3.3:13040693-13040712 | MS.gene77080:CDS | 35.0% | |
| TCATACCTTATGCTTAATCC+TGG | + | chr3.3:13040193-13040212 | MS.gene77080:CDS | 35.0% | |
| TCTTCAATCTTCACCTTCAT+CGG | + | chr3.3:13039814-13039833 | MS.gene77080:CDS | 35.0% | |
| TGTTATCATCTTCGTTCTCT+TGG | - | chr3.3:13041101-13041120 | None:intergenic | 35.0% | |
| TTCATATGATGAAACTGCCA+TGG | + | chr3.3:13040456-13040475 | MS.gene77080:CDS | 35.0% | |
| TTCTTCTGTTTACACAGATG+AGG | + | chr3.3:13040816-13040835 | MS.gene77080:CDS | 35.0% | |
| TTTCATTTGCCAGTGAAGAT+TGG | - | chr3.3:13041032-13041051 | None:intergenic | 35.0% | |
| TTTCGGTATTACAGTTTCGA+AGG | - | chr3.3:13041508-13041527 | None:intergenic | 35.0% | |
| ! | AATAAATCAGGGTTTGCTCA+TGG | + | chr3.3:13041546-13041565 | MS.gene77080:CDS | 35.0% |
| ! | AGAAGTAGGATTTCTGAAAG+AGG | + | chr3.3:13040618-13040637 | MS.gene77080:CDS | 35.0% |
| ! | ATGTAATTTGGTGAACCATC+TGG | - | chr3.3:13039905-13039924 | None:intergenic | 35.0% |
| ! | TGAAGACTTTTATGTCTTCG+AGG | + | chr3.3:13040311-13040330 | MS.gene77080:CDS | 35.0% |
| ! | TGATTTGAGGCATCAAATGA+TGG | + | chr3.3:13041377-13041396 | MS.gene77080:CDS | 35.0% |
| ! | TGTCTCGTCAACATTTTCTT+CGG | - | chr3.3:13041076-13041095 | None:intergenic | 35.0% |
| !! | AAAAACCGATTTTCTCGAAG+AGG | + | chr3.3:13040546-13040565 | MS.gene77080:CDS | 35.0% |
| !! | CTTGTTGGCTTCATGTAATT+TGG | - | chr3.3:13039917-13039936 | None:intergenic | 35.0% |
| !! | GACAAAGACTACTAGCTTTA+AGG | + | chr3.3:13040096-13040115 | MS.gene77080:CDS | 35.0% |
| !!! | CTTTTTCAGGTACTAATGGA+AGG | - | chr3.3:13041344-13041363 | None:intergenic | 35.0% |
| !!! | GTAGCTCTTGTTGATTTTCT+AGG | - | chr3.3:13040139-13040158 | None:intergenic | 35.0% |
| AAAGAATGCAGAGGATTGGA+TGG | + | chr3.3:13041407-13041426 | MS.gene77080:CDS | 40.0% | |
| AAGCAGTTCACATGCAAAGA+AGG | + | chr3.3:13039934-13039953 | MS.gene77080:CDS | 40.0% | |
| AGAAAGGTTTCAAGCAAGCT+TGG | + | chr3.3:13039638-13039657 | MS.gene77080:CDS | 40.0% | |
| AGAGAAAGAATGCAGAGGAT+TGG | + | chr3.3:13041403-13041422 | MS.gene77080:CDS | 40.0% | |
| AGGAAAACACAAGAGAGGAT+CGG | + | chr3.3:13041235-13041254 | MS.gene77080:CDS | 40.0% | |
| CTCAACCTCTTCGAGAAAAT+CGG | - | chr3.3:13040554-13040573 | None:intergenic | 40.0% | |
| TACCTTATGCTTAATCCTGG+TGG | + | chr3.3:13040196-13040215 | MS.gene77080:CDS | 40.0% | |
| TGTCATCATAATAGCTGCTG+AGG | - | chr3.3:13040885-13040904 | None:intergenic | 40.0% | |
| TTCATCACGCTCGATATCTT+CGG | - | chr3.3:13040758-13040777 | None:intergenic | 40.0% | |
| TTCCACCAGGATTAAGCATA+AGG | - | chr3.3:13040201-13040220 | None:intergenic | 40.0% | |
| TTTGCATGTGAACTGCTTGT+TGG | - | chr3.3:13039932-13039951 | None:intergenic | 40.0% | |
| ! | AGACTTTTATGTCTTCGAGG+AGG | + | chr3.3:13040314-13040333 | MS.gene77080:CDS | 40.0% |
| ! | CATTTTCTTCGGCATTTGTC+AGG | - | chr3.3:13041065-13041084 | None:intergenic | 40.0% |
| AACACAAGAGAGGATCGGAA+AGG | + | chr3.3:13041240-13041259 | MS.gene77080:CDS | 45.0% | |
| AAGGTGTGATTAGGCGAAAG+AGG | + | chr3.3:13041259-13041278 | MS.gene77080:CDS | 45.0% | |
| ACCACAAAAACAGCATCCCT+TGG | + | chr3.3:13039868-13039887 | MS.gene77080:CDS | 45.0% | |
| GGATGAGAGAAAGAATGCAG+AGG | + | chr3.3:13041398-13041417 | MS.gene77080:CDS | 45.0% | |
| TCCTGCTAGGAAGAAGAAAG+TGG | + | chr3.3:13041467-13041486 | MS.gene77080:CDS | 45.0% | |
| TGACGAGGAAAACACAAGAG+AGG | + | chr3.3:13041230-13041249 | MS.gene77080:CDS | 45.0% | |
| ! | AGGATCGGAAAGGTGTGATT+AGG | + | chr3.3:13041250-13041269 | MS.gene77080:CDS | 45.0% |
| ! | CGATTTTCTCGAAGAGGTTG+AGG | + | chr3.3:13040552-13040571 | MS.gene77080:CDS | 45.0% |
| ! | TTGGTAGCAACCGATGTCAT+CGG | - | chr3.3:13041013-13041032 | None:intergenic | 45.0% |
| !! | AAGTTGCGTAGTTGATGACG+AGG | + | chr3.3:13041215-13041234 | MS.gene77080:CDS | 45.0% |
| !!! | ACCAAGGGATGCTGTTTTTG+TGG | - | chr3.3:13039872-13039891 | None:intergenic | 45.0% |
| CCTGGTGGAACTGAGTTAGA+AGG | + | chr3.3:13040211-13040230 | MS.gene77080:CDS | 50.0% | |
| CCTTCAATCTTCGACCACGA+GGG | - | chr3.3:13040375-13040394 | None:intergenic | 50.0% | |
| CCTTCTAACTCAGTTCCACC+AGG | - | chr3.3:13040214-13040233 | None:intergenic | 50.0% | |
| CGAAGAGGTTGAGGATCATG+AGG | + | chr3.3:13040561-13040580 | MS.gene77080:CDS | 50.0% | |
| CGGTTGCTACCAATCTTCAC+TGG | + | chr3.3:13041020-13041039 | MS.gene77080:CDS | 50.0% | |
| GGAAGGAAATTCGGCTCTCT+TGG | - | chr3.3:13041327-13041346 | None:intergenic | 50.0% | |
| GGTCGAAGATTGAAGGCTAC+TGG | + | chr3.3:13040379-13040398 | MS.gene77080:CDS | 50.0% | |
| GGTTACTCCTCCGATGACAT+CGG | + | chr3.3:13041000-13041019 | MS.gene77080:CDS | 50.0% | |
| TTGGTGAGAACAGCACCAGA+TGG | + | chr3.3:13039887-13039906 | MS.gene77080:CDS | 50.0% | |
| ! | GCCACTTTCTTCTTCCTAGC+AGG | - | chr3.3:13041471-13041490 | None:intergenic | 50.0% |
| ! | TGAACAAGCTTGCTCCTGCT+AGG | + | chr3.3:13041454-13041473 | MS.gene77080:CDS | 50.0% |
| !! | ATCTGGTGCTGTTCTCACCA+AGG | - | chr3.3:13039888-13039907 | None:intergenic | 50.0% |
| !! | TCTGGTGCTGTTCTCACCAA+GGG | - | chr3.3:13039887-13039906 | None:intergenic | 50.0% |
| !!! | GGGATGCTGTTTTTGTGGTG+AGG | - | chr3.3:13039867-13039886 | None:intergenic | 50.0% |
| !!! | GGTGCTGCTTTTGTCGAACT+CGG | - | chr3.3:13039842-13039861 | None:intergenic | 50.0% |
| !!! | TGCTGTTTTTGTGGTGAGGC+AGG | - | chr3.3:13039863-13039882 | None:intergenic | 50.0% |
| CCCTCGTGGTCGAAGATTGA+AGG | + | chr3.3:13040372-13040391 | MS.gene77080:CDS | 55.0% | |
| GCCTTCAATCTTCGACCACG+AGG | - | chr3.3:13040376-13040395 | None:intergenic | 55.0% | |
| GTAGCAACCGATGTCATCGG+AGG | - | chr3.3:13041010-13041029 | None:intergenic | 55.0% | |
| GTCGAACTCGGAACCGATGA+AGG | - | chr3.3:13039830-13039849 | None:intergenic | 55.0% | |
| !! | CTCGAAGCTCTGAGCCCTCG+TGG | + | chr3.3:13040358-13040377 | MS.gene77080:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 13039629 | 13041593 | 13039629 | ID=MS.gene77080 |
| chr3.3 | mRNA | 13039629 | 13041593 | 13039629 | ID=MS.gene77080.t1;Parent=MS.gene77080 |
| chr3.3 | exon | 13039629 | 13041593 | 13039629 | ID=MS.gene77080.t1.exon1;Parent=MS.gene77080.t1 |
| chr3.3 | CDS | 13039629 | 13041593 | 13039629 | ID=cds.MS.gene77080.t1;Parent=MS.gene77080.t1 |
| Gene Sequence |
| Protein sequence |
