Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053881.t1 | ABN08053.1 | 53.4 | 118 | 52 | 2 | 180 | 295 | 6 | 122 | 3.40E-23 | 119.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053881.t1 | A2Q353 | 53.4 | 118 | 52 | 2 | 180 | 295 | 6 | 122 | 2.4e-23 | 119.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053881 | MS.gene05531 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene053881 | MS.gene61387 | 0.842631 | 2.30E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053881.t1 | MTR_4g132870 | 39.286 | 140 | 72 | 4 | 171 | 297 | 45 | 184 | 1.14e-21 | 94.7 |
| MS.gene053881.t1 | MTR_4g132870 | 39.850 | 133 | 68 | 3 | 341 | 461 | 45 | 177 | 1.02e-19 | 89.4 |
| MS.gene053881.t1 | MTR_4g132870 | 30.818 | 159 | 100 | 4 | 31 | 179 | 47 | 205 | 1.29e-11 | 65.5 |
| MS.gene053881.t1 | MTR_4g055460 | 46.602 | 103 | 55 | 0 | 167 | 269 | 132 | 234 | 8.44e-21 | 92.0 |
| MS.gene053881.t1 | MTR_4g055460 | 37.607 | 117 | 66 | 3 | 344 | 454 | 139 | 254 | 6.00e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCGCAAATTTCAGTTAA+AGG | 0.184922 | 5.3:+43776491 | MS.gene053881:CDS |
| TTGCAACATCCACAAGAATT+TGG | 0.231971 | 5.3:-43777941 | None:intergenic |
| GAATCATCTTCCTTCTTTAT+TGG | 0.237202 | 5.3:+43775951 | MS.gene053881:CDS |
| AAATCCGAGCCTTCTCTTCT+TGG | 0.278935 | 5.3:-43776544 | None:intergenic |
| CAGTTACCGCTCAGCCTTCC+AGG | 0.297764 | 5.3:+43777627 | MS.gene053881:intron |
| CCCTAGTATGTTGGATCAAA+TGG | 0.315421 | 5.3:+43777323 | MS.gene053881:CDS |
| ACAATGCCATTGGCCCCTAT+TGG | 0.339774 | 5.3:+43777274 | MS.gene053881:CDS |
| CCTGGGCGGTGATCGGGTCT+TGG | 0.355875 | 5.3:-43778125 | None:intergenic |
| ATCGGTCCTGGGCGGTGATC+GGG | 0.364383 | 5.3:-43778131 | None:intergenic |
| GACTCATATCGGATAATTGC+TGG | 0.372336 | 5.3:+43777345 | MS.gene053881:CDS |
| GATCGGTCCTGGGCGGTGAT+CGG | 0.384933 | 5.3:-43778132 | None:intergenic |
| AGGACTTTACCTTCTCTTCC+TGG | 0.387202 | 5.3:-43777645 | None:intergenic |
| GATAGGTCCCTGGCAGTGAT+TGG | 0.406728 | 5.3:-43776349 | None:intergenic |
| TCCATTTGATCCAACATACT+AGG | 0.414437 | 5.3:-43777324 | None:intergenic |
| ACAAGAAGAAGAAGCCTATC+AGG | 0.420566 | 5.3:+43775977 | MS.gene053881:CDS |
| CTTCTCTTCTTGGACGGCTG+AGG | 0.422372 | 5.3:-43776534 | None:intergenic |
| ATGTCTCCACGACTAGATTA+CGG | 0.427068 | 5.3:+43776438 | MS.gene053881:CDS |
| CTCGAAATGGACTCGTCTCC+AGG | 0.429450 | 5.3:+43775446 | None:intergenic |
| CCCTGGCAGTGATTGGGTCT+TGG | 0.430320 | 5.3:-43776342 | None:intergenic |
| ACAAGGCTATTGGTCGTTGT+TGG | 0.431985 | 5.3:+43778192 | MS.gene053881:CDS |
| TTCTCTTCTTGGACGGCTGA+GGG | 0.433369 | 5.3:-43776533 | None:intergenic |
| TTGGATACATTGAAAGAGAT+TGG | 0.434993 | 5.3:-43778014 | None:intergenic |
| TGCAAGTAGTGATTGGATCT+TGG | 0.435512 | 5.3:-43777207 | None:intergenic |
| TGTCTCCACGACTAGATTAC+GGG | 0.440175 | 5.3:+43776439 | MS.gene053881:CDS |
| AGAAGATTAAGAAGCCGTCC+AGG | 0.441996 | 5.3:+43777783 | MS.gene053881:CDS |
| CTAAGAGTGACGCAAAATCT+TGG | 0.451208 | 5.3:-43778288 | None:intergenic |
| CTCTGGAGCAACTCATTGTC+AGG | 0.453704 | 5.3:+43776297 | MS.gene053881:CDS |
| ATCTGTCATAATAGAATAGT+AGG | 0.454817 | 5.3:-43777136 | None:intergenic |
| AGGCTATTGGTCGTTGTTGG+AGG | 0.460720 | 5.3:+43778195 | MS.gene053881:CDS |
| TGGATCAAATGGACTCATAT+CGG | 0.461338 | 5.3:+43777334 | MS.gene053881:CDS |
| TTTCAATGTATCCAACAAGT+TGG | 0.461619 | 5.3:+43778022 | MS.gene053881:CDS |
| GGATTCTGTGTTCACTGCAT+TGG | 0.467162 | 5.3:-43777115 | None:intergenic |
| TCACTGCCAGGTTGTACAAA+TGG | 0.474076 | 5.3:+43777756 | MS.gene053881:intron |
| GTACACTTCATGCAAGGATT+CGG | 0.481226 | 5.3:-43776250 | None:intergenic |
| TTGCTAGTCCAGCTTAATAG+TGG | 0.485561 | 5.3:-43777390 | None:intergenic |
| GTACATTCAATGATCGGTCC+TGG | 0.492647 | 5.3:-43778143 | None:intergenic |
| AAGTTGGATTTAAAATCCTA+TGG | 0.493291 | 5.3:+43778038 | MS.gene053881:CDS |
| TAACTGAAATTTGCGCATCT+CGG | 0.496683 | 5.3:-43776487 | None:intergenic |
| TTCTTGTCAACCAATAAAGA+AGG | 0.497287 | 5.3:-43775961 | None:intergenic |
| CAAGTTTCAACTTGAGAACA+AGG | 0.501169 | 5.3:+43777071 | MS.gene053881:CDS |
| ATAGGTCCCTGGCAGTGATT+GGG | 0.502253 | 5.3:-43776348 | None:intergenic |
| TCCAAGACCCAATCACTGCC+AGG | 0.509954 | 5.3:+43776341 | MS.gene053881:CDS |
| CTTTACCTTCTCTTCCTGGA+AGG | 0.515903 | 5.3:-43777641 | None:intergenic |
| TTAGAGCCGCCTCACTCTCC+AGG | 0.523260 | 5.3:+43777423 | MS.gene053881:CDS |
| GACTCTCCAATAGGGGCCAA+TGG | 0.525366 | 5.3:-43777280 | None:intergenic |
| ACAACGCTGCGACATAAGAT+AGG | 0.527651 | 5.3:-43776366 | None:intergenic |
| TTTCAGTTAAAGGCTCGGAT+TGG | 0.528273 | 5.3:+43776501 | MS.gene053881:CDS |
| CCGAGCCTTCTCTTCTTGGA+CGG | 0.529562 | 5.3:-43776540 | None:intergenic |
| CCAAGACCCGATCACCGCCC+AGG | 0.533298 | 5.3:+43778125 | MS.gene053881:CDS |
| GGCTATTGGTCGTTGTTGGA+GGG | 0.539292 | 5.3:+43778196 | MS.gene053881:CDS |
| GCAAGCCTCATCACAAATGT+TGG | 0.539333 | 5.3:-43778219 | None:intergenic |
| AAAATCCTATGGTCAAATTG+TGG | 0.542866 | 5.3:+43778049 | MS.gene053881:CDS |
| GCAAATTTCAGTTAAAGGCT+CGG | 0.548210 | 5.3:+43776496 | MS.gene053881:CDS |
| GAGGACTTACACACTCTCCC+TGG | 0.551842 | 5.3:-43777801 | None:intergenic |
| ACAGTGATCCACTATTAAGC+TGG | 0.553971 | 5.3:+43777382 | MS.gene053881:CDS |
| TACATTCAATGATCGGTCCT+GGG | 0.554342 | 5.3:-43778142 | None:intergenic |
| TAGTTTCTAGCAACTTAACG+TGG | 0.556708 | 5.3:+43777160 | MS.gene053881:CDS |
| TCGGATACTCTGAAATAGAC+TGG | 0.557080 | 5.3:-43776231 | None:intergenic |
| GAGGGCCAACATTTGTGATG+AGG | 0.561335 | 5.3:+43778214 | MS.gene053881:CDS |
| CCATTTGATCCAACATACTA+GGG | 0.562578 | 5.3:-43777323 | None:intergenic |
| TCCTATGGTCAAATTGTGGA+TGG | 0.562683 | 5.3:+43778053 | MS.gene053881:CDS |
| AGAGAAGGCTCGGATTTCCC+AGG | 0.567377 | 5.3:+43776550 | MS.gene053881:CDS |
| CCGTCCAAGAAGAGAAGGCT+CGG | 0.569243 | 5.3:+43776540 | MS.gene053881:CDS |
| TTTGCTTCAAAAGTATACTC+AGG | 0.572249 | 5.3:+43777983 | MS.gene053881:CDS |
| AGATTGTAACCCTAGTATGT+TGG | 0.577522 | 5.3:+43777314 | MS.gene053881:CDS |
| CTCAGCCGTCCAAGAAGAGA+AGG | 0.577940 | 5.3:+43776535 | MS.gene053881:CDS |
| AGGGTAGTACATTCAATGAT+CGG | 0.578179 | 5.3:-43778149 | None:intergenic |
| ACCGTAGTACACTTCATGCA+AGG | 0.583697 | 5.3:-43776256 | None:intergenic |
| AACGAGAGGACTTACCTGAT+AGG | 0.583881 | 5.3:-43775991 | None:intergenic |
| CTCAGCCTTCCAGGAAGAGA+AGG | 0.587411 | 5.3:+43777636 | MS.gene053881:CDS |
| ACTCATATCGGATAATTGCT+GGG | 0.588016 | 5.3:+43777346 | MS.gene053881:CDS |
| GGAGGTGCACCAAATTCTTG+TGG | 0.588115 | 5.3:+43777932 | MS.gene053881:CDS |
| ACATGATGACCTTCCAATGA+CGG | 0.590396 | 5.3:-43776419 | None:intergenic |
| ACCATCCACAATTTGACCAT+AGG | 0.596248 | 5.3:-43778054 | None:intergenic |
| AGTTTCTAGCAACTTAACGT+GGG | 0.605785 | 5.3:+43777161 | MS.gene053881:CDS |
| GAAGATTAAGAAGCCGTCCA+GGG | 0.618843 | 5.3:+43777784 | MS.gene053881:CDS |
| TCCTTGCATGAAGTGTACTA+CGG | 0.624975 | 5.3:+43776255 | MS.gene053881:CDS |
| TGCGACATAAGATAGGTCCC+TGG | 0.625163 | 5.3:-43776359 | None:intergenic |
| TCTCTTCTTGGACGGCTGAG+GGG | 0.625166 | 5.3:-43776532 | None:intergenic |
| ACTTACACACTCTCCCTGGA+CGG | 0.635749 | 5.3:-43777797 | None:intergenic |
| CCAAGACCCAATCACTGCCA+GGG | 0.637709 | 5.3:+43776342 | MS.gene053881:CDS |
| GATACTCTGAAATAGACTGG+TGG | 0.641242 | 5.3:-43776228 | None:intergenic |
| CAATCCCCGTAATCTAGTCG+TGG | 0.641554 | 5.3:-43776444 | None:intergenic |
| AAATATATACCTGGAGAGTG+AGG | 0.648464 | 5.3:-43777432 | None:intergenic |
| AAGTTTCAACTTGAGAACAA+GGG | 0.650258 | 5.3:+43777072 | MS.gene053881:CDS |
| AGTCTTCAACATCACACAGA+CGG | 0.657617 | 5.3:-43776158 | None:intergenic |
| GTTTCTAGCAACTTAACGTG+GGG | 0.663290 | 5.3:+43777162 | MS.gene053881:CDS |
| CATTGAATGTACTACCCTAG+AGG | 0.668746 | 5.3:+43778154 | MS.gene053881:CDS |
| GCAAAGATTTAAAATCGTCG+AGG | 0.672808 | 5.3:-43777044 | None:intergenic |
| GTCTCCACGACTAGATTACG+GGG | 0.678029 | 5.3:+43776440 | MS.gene053881:CDS |
| TCTCTTCCTGGAAGGCTGAG+CGG | 0.680436 | 5.3:-43777633 | None:intergenic |
| GCAAACTACAAAATTCTGTG+TGG | 0.688012 | 5.3:-43777965 | None:intergenic |
| TATATACCTGGAGAGTGAGG+CGG | 0.703848 | 5.3:-43777429 | None:intergenic |
| ATTCAATGATCGGTCCTGGG+CGG | 0.719931 | 5.3:-43778139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGTTAGAAATATA+TGG | - | chr5.3:43777733-43777752 | None:intergenic | 10.0% |
| !! | AAAATAATAATAAACAAGAA+TGG | - | chr5.3:43776698-43776717 | None:intergenic | 10.0% |
| !! | AATAATAAAGAAAGAATTTC+AGG | - | chr5.3:43776583-43776602 | None:intergenic | 15.0% |
| !! | ACATAAATTATGAAAAACAA+GGG | - | chr5.3:43776130-43776149 | None:intergenic | 15.0% |
| !! | CTACAAAAAAACAAAAAATT+CGG | - | chr5.3:43776033-43776052 | None:intergenic | 15.0% |
| !! | TAAGAATGTAAAGTAATATA+TGG | - | chr5.3:43775692-43775711 | None:intergenic | 15.0% |
| !! | TACATAAATTATGAAAAACA+AGG | - | chr5.3:43776131-43776150 | None:intergenic | 15.0% |
| !!! | AATTTTTTTCCTTTGATTAT+TGG | + | chr5.3:43775906-43775925 | MS.gene053881:intron | 15.0% |
| !!! | ACAAAAAAAAAAGGTATTAA+TGG | - | chr5.3:43777862-43777881 | None:intergenic | 15.0% |
| !!! | ATAATAAAGAAATTTTGAAG+AGG | - | chr5.3:43775650-43775669 | None:intergenic | 15.0% |
| !!! | ATTTTCATGGTTTTAAATAT+TGG | + | chr5.3:43776639-43776658 | MS.gene053881:intron | 15.0% |
| !!! | TGTTTTTCATAATTTATGTA+GGG | + | chr5.3:43776131-43776150 | MS.gene053881:intron | 15.0% |
| !!! | TTGTTTTTCATAATTTATGT+AGG | + | chr5.3:43776130-43776149 | MS.gene053881:intron | 15.0% |
| !! | AAAAATATTTACAATGCCAT+TGG | + | chr5.3:43777264-43777283 | MS.gene053881:CDS | 20.0% |
| !! | ACTGAAAAAATAGACATATA+TGG | - | chr5.3:43775587-43775606 | None:intergenic | 20.0% |
| !! | ATAGAGAAAGAAAACATATA+TGG | - | chr5.3:43777602-43777621 | None:intergenic | 20.0% |
| !! | TGCATAAATTTGAAAACAAA+TGG | - | chr5.3:43776990-43777009 | None:intergenic | 20.0% |
| !! | TTTAATTGTGAAAATGAGTT+TGG | + | chr5.3:43776717-43776736 | MS.gene053881:intron | 20.0% |
| !!! | AATACCTTTTTTTTTTGTTG+TGG | + | chr5.3:43777864-43777883 | MS.gene053881:intron | 20.0% |
| !!! | ATTTGTTTTCAAATTTATGC+AGG | + | chr5.3:43776989-43777008 | MS.gene053881:intron | 20.0% |
| !!! | ATTTTTAACAAGACATTATC+TGG | + | chr5.3:43776796-43776815 | MS.gene053881:intron | 20.0% |
| !!! | TCATTTTTTCCTTTGATTAT+TGG | + | chr5.3:43775549-43775568 | MS.gene053881:intron | 20.0% |
| !!! | TTCTTTTCATAATTTATGCA+GGG | + | chr5.3:43777911-43777930 | MS.gene053881:intron | 20.0% |
| ! | AAACTTAATAAGCAATCCTT+TGG | + | chr5.3:43776090-43776109 | MS.gene053881:intron | 25.0% |
| ! | AAGAGTTTATAGTTTCAAAC+TGG | - | chr5.3:43776866-43776885 | None:intergenic | 25.0% |
| ! | AGTTCCACAACAAAAAAAAA+AGG | - | chr5.3:43777871-43777890 | None:intergenic | 25.0% |
| ! | ATCTGTCATAATAGAATAGT+AGG | - | chr5.3:43777139-43777158 | None:intergenic | 25.0% |
| ! | CATCTATGTAATGAAATATC+AGG | - | chr5.3:43777680-43777699 | None:intergenic | 25.0% |
| ! | TACTTCTTAGCAACAAAAAT+GGG | + | chr5.3:43778078-43778097 | MS.gene053881:CDS | 25.0% |
| ! | TGAATGTATGTAAATATACC+TGG | - | chr5.3:43775467-43775486 | None:intergenic | 25.0% |
| !! | AAAGCTATTTGCAATGTTTT+TGG | + | chr5.3:43776396-43776415 | MS.gene053881:CDS | 25.0% |
| !! | AAGTTGGATTTAAAATCCTA+TGG | + | chr5.3:43778038-43778057 | MS.gene053881:CDS | 25.0% |
| !! | GTTCTTTTCATAATTTATGC+AGG | + | chr5.3:43777910-43777929 | MS.gene053881:intron | 25.0% |
| !! | TGTTCAAAATGATGATGATT+AGG | + | chr5.3:43777522-43777541 | MS.gene053881:intron | 25.0% |
| !!! | ATTGCATGTATTTTGTTATG+CGG | + | chr5.3:43776608-43776627 | MS.gene053881:intron | 25.0% |
| !!! | CAGAAAAACTGTTTTAAACA+CGG | + | chr5.3:43776825-43776844 | MS.gene053881:intron | 25.0% |
| !!! | TTTGTAGTTTTACAAGTCTT+GGG | - | chr5.3:43777237-43777256 | None:intergenic | 25.0% |
| !!! | TTTTGTAGTTTTACAAGTCT+TGG | - | chr5.3:43777238-43777257 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTTTGATTATTGG+CGG | + | chr5.3:43775552-43775571 | MS.gene053881:intron | 25.0% |
| !!! | TTTTTTCCTTTGATTATTGG+TGG | + | chr5.3:43775552-43775571 | MS.gene053881:intron | 25.0% |
| AAAAATGCTTACAAGGCTAT+TGG | + | chr5.3:43778182-43778201 | MS.gene053881:CDS | 30.0% | |
| AAAATCCTATGGTCAAATTG+TGG | + | chr5.3:43778049-43778068 | MS.gene053881:CDS | 30.0% | |
| AAACTAGCACCAATAATCAA+AGG | - | chr5.3:43775918-43775937 | None:intergenic | 30.0% | |
| AAATTGCGAAAAATCTACTC+TGG | + | chr5.3:43776280-43776299 | MS.gene053881:CDS | 30.0% | |
| AAGAAACAGAATCATACTAG+GGG | - | chr5.3:43776952-43776971 | None:intergenic | 30.0% | |
| AAGTTTCAACTTGAGAACAA+GGG | + | chr5.3:43777072-43777091 | MS.gene053881:CDS | 30.0% | |
| AGAAGAAACAGAATCATACT+AGG | - | chr5.3:43776954-43776973 | None:intergenic | 30.0% | |
| ATGAAAAGAACCGAAAACAA+GGG | - | chr5.3:43777901-43777920 | None:intergenic | 30.0% | |
| CTACTTCTTAGCAACAAAAA+TGG | + | chr5.3:43778077-43778096 | MS.gene053881:CDS | 30.0% | |
| GAAGAAACAGAATCATACTA+GGG | - | chr5.3:43776953-43776972 | None:intergenic | 30.0% | |
| GAATCATCTTCCTTCTTTAT+TGG | + | chr5.3:43775951-43775970 | MS.gene053881:CDS | 30.0% | |
| GGAGATAAAAAATGCTTACA+AGG | + | chr5.3:43778175-43778194 | MS.gene053881:CDS | 30.0% | |
| TAAACCTGTTTCGAACTTAA+TGG | + | chr5.3:43776888-43776907 | MS.gene053881:intron | 30.0% | |
| TATGAAAAGAACCGAAAACA+AGG | - | chr5.3:43777902-43777921 | None:intergenic | 30.0% | |
| TGTGTGTGTAAATATATACC+TGG | - | chr5.3:43777444-43777463 | None:intergenic | 30.0% | |
| TTATGAAAAACAAGGGTTTC+AGG | - | chr5.3:43776123-43776142 | None:intergenic | 30.0% | |
| TTCTTGTCAACCAATAAAGA+AGG | - | chr5.3:43775964-43775983 | None:intergenic | 30.0% | |
| TTGGATACATTGAAAGAGAT+TGG | - | chr5.3:43778017-43778036 | None:intergenic | 30.0% | |
| TTTCAATGTATCCAACAAGT+TGG | + | chr5.3:43778022-43778041 | MS.gene053881:CDS | 30.0% | |
| ! | GACGATTTTAAATCTTTGCT+TGG | + | chr5.3:43777048-43777067 | MS.gene053881:CDS | 30.0% |
| ! | GGATTTTAAATCCAACTTGT+TGG | - | chr5.3:43778036-43778055 | None:intergenic | 30.0% |
| ! | TTTGCTTCAAAAGTATACTC+AGG | + | chr5.3:43777983-43778002 | MS.gene053881:CDS | 30.0% |
| ! | TTTTCATAATTTATGCAGGG+AGG | + | chr5.3:43777914-43777933 | MS.gene053881:intron | 30.0% |
| ! | TTTTGTGCAAGATGATGATT+AGG | + | chr5.3:43775864-43775883 | MS.gene053881:intron | 30.0% |
| !! | GAAATATCAGGATTTTGAAG+AGG | - | chr5.3:43777668-43777687 | None:intergenic | 30.0% |
| !!! | AAGCATTTTTTATCTCCTCT+AGG | - | chr5.3:43778172-43778191 | None:intergenic | 30.0% |
| !!! | AGCATTTTTTATCTCCTCTA+GGG | - | chr5.3:43778171-43778190 | None:intergenic | 30.0% |
| !!! | GTGTAAGTGCTTATTTTGTA+AGG | + | chr5.3:43776667-43776686 | MS.gene053881:intron | 30.0% |
| !!! | TGATTATTGGTGCTAGTTTT+TGG | + | chr5.3:43775919-43775938 | MS.gene053881:intron | 30.0% |
| AAAACAAAGAGACAAACGAG+AGG | - | chr5.3:43776008-43776027 | None:intergenic | 35.0% | |
| AAATATATACCTGGAGAGTG+AGG | - | chr5.3:43777435-43777454 | None:intergenic | 35.0% | |
| AATGATTGCAAAAACCTACC+TGG | - | chr5.3:43775845-43775864 | None:intergenic | 35.0% | |
| ACAAAGCAAGAAAGTAAGAG+AGG | - | chr5.3:43777823-43777842 | None:intergenic | 35.0% | |
| ACTCATATCGGATAATTGCT+GGG | + | chr5.3:43777346-43777365 | MS.gene053881:CDS | 35.0% | |
| AGAATTTCAGGAAACTTACC+TGG | - | chr5.3:43776571-43776590 | None:intergenic | 35.0% | |
| AGATTGTAACCCTAGTATGT+TGG | + | chr5.3:43777314-43777333 | MS.gene053881:CDS | 35.0% | |
| AGGGTAGTACATTCAATGAT+CGG | - | chr5.3:43778152-43778171 | None:intergenic | 35.0% | |
| CAAACCATTAAGTTCGAAAC+AGG | - | chr5.3:43776895-43776914 | None:intergenic | 35.0% | |
| CAACTACCACCAATAATCAA+AGG | - | chr5.3:43777576-43777595 | None:intergenic | 35.0% | |
| CAAGTTTCAACTTGAGAACA+AGG | + | chr5.3:43777071-43777090 | MS.gene053881:CDS | 35.0% | |
| CCATTTGATCCAACATACTA+GGG | - | chr5.3:43777326-43777345 | None:intergenic | 35.0% | |
| GAATTTCAGGAAACTTACCT+GGG | - | chr5.3:43776570-43776589 | None:intergenic | 35.0% | |
| GATGCGCAAATTTCAGTTAA+AGG | + | chr5.3:43776491-43776510 | MS.gene053881:CDS | 35.0% | |
| GCAAACTACAAAATTCTGTG+TGG | - | chr5.3:43777968-43777987 | None:intergenic | 35.0% | |
| GCAAATTTCAGTTAAAGGCT+CGG | + | chr5.3:43776496-43776515 | MS.gene053881:CDS | 35.0% | |
| TAACTGAAATTTGCGCATCT+CGG | - | chr5.3:43776490-43776509 | None:intergenic | 35.0% | |
| TAAGACGAGCACAAAAATCT+GGG | - | chr5.3:43776185-43776204 | None:intergenic | 35.0% | |
| TACCTGGAGACCTATATAAA+CGG | - | chr5.3:43775829-43775848 | None:intergenic | 35.0% | |
| TCCATTTGATCCAACATACT+AGG | - | chr5.3:43777327-43777346 | None:intergenic | 35.0% | |
| TTAAGACGAGCACAAAAATC+TGG | - | chr5.3:43776186-43776205 | None:intergenic | 35.0% | |
| TTCTTAGCAACAAAAATGGG+AGG | + | chr5.3:43778081-43778100 | MS.gene053881:CDS | 35.0% | |
| TTGCAACATCCACAAGAATT+TGG | - | chr5.3:43777944-43777963 | None:intergenic | 35.0% | |
| ! | ACGAGTTGAATCTGATGATT+AGG | + | chr5.3:43775507-43775526 | MS.gene053881:intron | 35.0% |
| ! | CGAGTTGAATCTGATGATTA+GGG | + | chr5.3:43775508-43775527 | MS.gene053881:intron | 35.0% |
| ! | GCAAAGATTTAAAATCGTCG+AGG | - | chr5.3:43777047-43777066 | None:intergenic | 35.0% |
| ! | TGGATCAAATGGACTCATAT+CGG | + | chr5.3:43777334-43777353 | MS.gene053881:CDS | 35.0% |
| !! | AGTTTCTAGCAACTTAACGT+GGG | + | chr5.3:43777161-43777180 | MS.gene053881:CDS | 35.0% |
| !! | TAGTTTCTAGCAACTTAACG+TGG | + | chr5.3:43777160-43777179 | MS.gene053881:CDS | 35.0% |
| ACAAGAAGAAGAAGCCTATC+AGG | + | chr5.3:43775977-43775996 | MS.gene053881:CDS | 40.0% | |
| ACAGTGATCCACTATTAAGC+TGG | + | chr5.3:43777382-43777401 | MS.gene053881:CDS | 40.0% | |
| ACATGATGACCTTCCAATGA+CGG | - | chr5.3:43776422-43776441 | None:intergenic | 40.0% | |
| ACCATCCACAATTTGACCAT+AGG | - | chr5.3:43778057-43778076 | None:intergenic | 40.0% | |
| AGTCTTCAACATCACACAGA+CGG | - | chr5.3:43776161-43776180 | None:intergenic | 40.0% | |
| ATGTCTCCACGACTAGATTA+CGG | + | chr5.3:43776438-43776457 | MS.gene053881:CDS | 40.0% | |
| CAACTACCGCCAATAATCAA+AGG | - | chr5.3:43775561-43775580 | None:intergenic | 40.0% | |
| CATTGAATGTACTACCCTAG+AGG | + | chr5.3:43778154-43778173 | MS.gene053881:CDS | 40.0% | |
| CCCTAGTATGTTGGATCAAA+TGG | + | chr5.3:43777323-43777342 | MS.gene053881:CDS | 40.0% | |
| CTAAGAGTGACGCAAAATCT+TGG | - | chr5.3:43778291-43778310 | None:intergenic | 40.0% | |
| CTTCTTCCATTTGTACAACC+TGG | - | chr5.3:43777765-43777784 | None:intergenic | 40.0% | |
| GACTCATATCGGATAATTGC+TGG | + | chr5.3:43777345-43777364 | MS.gene053881:CDS | 40.0% | |
| GTACACTTCATGCAAGGATT+CGG | - | chr5.3:43776253-43776272 | None:intergenic | 40.0% | |
| GTTTATATAGGTCTCCAGGT+AGG | + | chr5.3:43775828-43775847 | MS.gene053881:intron | 40.0% | |
| TACATTCAATGATCGGTCCT+GGG | - | chr5.3:43778145-43778164 | None:intergenic | 40.0% | |
| TCCTATGGTCAAATTGTGGA+TGG | + | chr5.3:43778053-43778072 | MS.gene053881:CDS | 40.0% | |
| TCCTTGCATGAAGTGTACTA+CGG | + | chr5.3:43776255-43776274 | MS.gene053881:CDS | 40.0% | |
| TGAAAAACAAGGGTTTCAGG+TGG | - | chr5.3:43776120-43776139 | None:intergenic | 40.0% | |
| TGCAAGTAGTGATTGGATCT+TGG | - | chr5.3:43777210-43777229 | None:intergenic | 40.0% | |
| TTACGTTCTCTTTCTCTTCC+TGG | - | chr5.3:43775624-43775643 | None:intergenic | 40.0% | |
| TTCGTGGTTCATAATTCGTC+TGG | - | chr5.3:43776927-43776946 | None:intergenic | 40.0% | |
| TTGCTAGTCCAGCTTAATAG+TGG | - | chr5.3:43777393-43777412 | None:intergenic | 40.0% | |
| TTTCAGTTAAAGGCTCGGAT+TGG | + | chr5.3:43776501-43776520 | MS.gene053881:CDS | 40.0% | |
| ! | GTTCTTTTGCTGGACAAACT+AGG | - | chr5.3:43775782-43775801 | None:intergenic | 40.0% |
| ! | TGCGGATGCAAACATTTTCA+TGG | + | chr5.3:43776626-43776645 | MS.gene053881:intron | 40.0% |
| !! | GATACTCTGAAATAGACTGG+TGG | - | chr5.3:43776231-43776250 | None:intergenic | 40.0% |
| !! | GTTTCTAGCAACTTAACGTG+GGG | + | chr5.3:43777162-43777181 | MS.gene053881:CDS | 40.0% |
| !! | TCGGATACTCTGAAATAGAC+TGG | - | chr5.3:43776234-43776253 | None:intergenic | 40.0% |
| !!! | ACGCATTTTGACTCTCCAAT+AGG | - | chr5.3:43777292-43777311 | None:intergenic | 40.0% |
| !!! | ACTCCTCAAACCCTTGTTTT+CGG | + | chr5.3:43777888-43777907 | MS.gene053881:intron | 40.0% |
| !!! | CATTTTTTTCTCTCACTGCC+AGG | + | chr5.3:43777744-43777763 | MS.gene053881:intron | 40.0% |
| !!! | CGCATTTTGACTCTCCAATA+GGG | - | chr5.3:43777291-43777310 | None:intergenic | 40.0% |
| !!! | GCATTTTGACTCTCCAATAG+GGG | - | chr5.3:43777290-43777309 | None:intergenic | 40.0% |
| AAAAGATGCGAGCTCTGTTG+GGG | + | chr5.3:43776752-43776771 | MS.gene053881:intron | 45.0% | |
| AAATCCGAGCCTTCTCTTCT+TGG | - | chr5.3:43776547-43776566 | None:intergenic | 45.0% | |
| AACGAGAGGACTTACCTGAT+AGG | - | chr5.3:43775994-43776013 | None:intergenic | 45.0% | |
| ACAACGCTGCGACATAAGAT+AGG | - | chr5.3:43776369-43776388 | None:intergenic | 45.0% | |
| ACAAGGCTATTGGTCGTTGT+TGG | + | chr5.3:43778192-43778211 | MS.gene053881:CDS | 45.0% | |
| ACACTCACCGCCGTTTATAT+AGG | + | chr5.3:43775816-43775835 | MS.gene053881:intron | 45.0% | |
| ACCGTAGTACACTTCATGCA+AGG | - | chr5.3:43776259-43776278 | None:intergenic | 45.0% | |
| AGAAGATTAAGAAGCCGTCC+AGG | + | chr5.3:43777783-43777802 | MS.gene053881:CDS | 45.0% | |
| AGGACTTTACCTTCTCTTCC+TGG | - | chr5.3:43777648-43777667 | None:intergenic | 45.0% | |
| CTGGAGACCTATATAAACGG+CGG | - | chr5.3:43775826-43775845 | None:intergenic | 45.0% | |
| CTTTACCTTCTCTTCCTGGA+AGG | - | chr5.3:43777644-43777663 | None:intergenic | 45.0% | |
| GAAAACAAATGGACGCAGTG+AGG | - | chr5.3:43776979-43776998 | None:intergenic | 45.0% | |
| GAAAAGATGCGAGCTCTGTT+GGG | + | chr5.3:43776751-43776770 | MS.gene053881:intron | 45.0% | |
| GAACCGAAAACAAGGGTTTG+AGG | - | chr5.3:43777894-43777913 | None:intergenic | 45.0% | |
| GAAGATTAAGAAGCCGTCCA+GGG | + | chr5.3:43777784-43777803 | MS.gene053881:CDS | 45.0% | |
| GCAAGCCTCATCACAAATGT+TGG | - | chr5.3:43778222-43778241 | None:intergenic | 45.0% | |
| GGATTCTGTGTTCACTGCAT+TGG | - | chr5.3:43777118-43777137 | None:intergenic | 45.0% | |
| GTACATTCAATGATCGGTCC+TGG | - | chr5.3:43778146-43778165 | None:intergenic | 45.0% | |
| GTTCTCTTTCTCTTCCTGGA+AGG | - | chr5.3:43775620-43775639 | None:intergenic | 45.0% | |
| TATATACCTGGAGAGTGAGG+CGG | - | chr5.3:43777432-43777451 | None:intergenic | 45.0% | |
| TCACTGCCAGGTTGTACAAA+TGG | + | chr5.3:43777756-43777775 | MS.gene053881:intron | 45.0% | |
| TGAAAAGATGCGAGCTCTGT+TGG | + | chr5.3:43776750-43776769 | MS.gene053881:intron | 45.0% | |
| TGTCTCCACGACTAGATTAC+GGG | + | chr5.3:43776439-43776458 | MS.gene053881:CDS | 45.0% | |
| ! | GGGCTTTTGCAAGTAGTGAT+TGG | - | chr5.3:43777217-43777236 | None:intergenic | 45.0% |
| ! | TTTTGCTGGACAAACTAGGC+AGG | - | chr5.3:43775778-43775797 | None:intergenic | 45.0% |
| !! | AATCATACTAGGGGTGTTCG+TGG | - | chr5.3:43776943-43776962 | None:intergenic | 45.0% |
| !!! | AGAGGGTTTGGTTCTTTTGC+TGG | - | chr5.3:43775792-43775811 | None:intergenic | 45.0% |
| !!! | GCAATGTTTTTGGCCGTCAT+TGG | + | chr5.3:43776406-43776425 | MS.gene053881:CDS | 45.0% |
| !!! | GGTGCTAGTTTTTGGCTTGA+AGG | + | chr5.3:43775927-43775946 | MS.gene053881:intron | 45.0% |
| !!! | TGTTTTTGGCCGTCATTGGA+AGG | + | chr5.3:43776410-43776429 | MS.gene053881:CDS | 45.0% |
| ACAAACTAGGCAGGCAGAGA+GGG | - | chr5.3:43775769-43775788 | None:intergenic | 50.0% | |
| ACAATGCCATTGGCCCCTAT+TGG | + | chr5.3:43777274-43777293 | MS.gene053881:CDS | 50.0% | |
| ACTTACACACTCTCCCTGGA+CGG | - | chr5.3:43777800-43777819 | None:intergenic | 50.0% | |
| AGGCTATTGGTCGTTGTTGG+AGG | + | chr5.3:43778195-43778214 | MS.gene053881:CDS | 50.0% | |
| ATAGGTCCCTGGCAGTGATT+GGG | - | chr5.3:43776351-43776370 | None:intergenic | 50.0% | |
| ATTCAATGATCGGTCCTGGG+CGG | - | chr5.3:43778142-43778161 | None:intergenic | 50.0% | |
| CAATCCCCGTAATCTAGTCG+TGG | - | chr5.3:43776447-43776466 | None:intergenic | 50.0% | |
| CGCCGTTTATATAGGTCTCC+AGG | + | chr5.3:43775824-43775843 | MS.gene053881:intron | 50.0% | |
| GAGGGCCAACATTTGTGATG+AGG | + | chr5.3:43778214-43778233 | MS.gene053881:CDS | 50.0% | |
| GGCTATTGGTCGTTGTTGGA+GGG | + | chr5.3:43778196-43778215 | MS.gene053881:CDS | 50.0% | |
| GTCTCCACGACTAGATTACG+GGG | + | chr5.3:43776440-43776459 | MS.gene053881:CDS | 50.0% | |
| GTGAGTGTGAGAAGAGGGTT+TGG | - | chr5.3:43775804-43775823 | None:intergenic | 50.0% | |
| TGCGACATAAGATAGGTCCC+TGG | - | chr5.3:43776362-43776381 | None:intergenic | 50.0% | |
| TTCTCTTCTTGGACGGCTGA+GGG | - | chr5.3:43776536-43776555 | None:intergenic | 50.0% | |
| ! | GGAGGTGCACCAAATTCTTG+TGG | + | chr5.3:43777932-43777951 | MS.gene053881:CDS | 50.0% |
| ! | GGTTTCAGGTGGTGTTCCAA+AGG | - | chr5.3:43776109-43776128 | None:intergenic | 50.0% |
| !! | CTCTGGAGCAACTCATTGTC+AGG | + | chr5.3:43776297-43776316 | MS.gene053881:CDS | 50.0% |
| AGAGAAGGCTCGGATTTCCC+AGG | + | chr5.3:43776550-43776569 | MS.gene053881:CDS | 55.0% | |
| CCAAGACCCAATCACTGCCA+GGG | + | chr5.3:43776342-43776361 | MS.gene053881:CDS | 55.0% | |
| CCGAGCCTTCTCTTCTTGGA+CGG | - | chr5.3:43776543-43776562 | None:intergenic | 55.0% | |
| CCGTCCAAGAAGAGAAGGCT+CGG | + | chr5.3:43776540-43776559 | MS.gene053881:CDS | 55.0% | |
| CTCAGCCGTCCAAGAAGAGA+AGG | + | chr5.3:43776535-43776554 | MS.gene053881:CDS | 55.0% | |
| CTCAGCCTTCCAGGAAGAGA+AGG | + | chr5.3:43775612-43775631 | MS.gene053881:intron | 55.0% | |
| CTTCTCTTCTTGGACGGCTG+AGG | - | chr5.3:43776537-43776556 | None:intergenic | 55.0% | |
| GACAAACTAGGCAGGCAGAG+AGG | - | chr5.3:43775770-43775789 | None:intergenic | 55.0% | |
| GACTCTCCAATAGGGGCCAA+TGG | - | chr5.3:43777283-43777302 | None:intergenic | 55.0% | |
| GAGGACTTACACACTCTCCC+TGG | - | chr5.3:43777804-43777823 | None:intergenic | 55.0% | |
| GATAGGTCCCTGGCAGTGAT+TGG | - | chr5.3:43776352-43776371 | None:intergenic | 55.0% | |
| TCCAAGACCCAATCACTGCC+AGG | + | chr5.3:43776341-43776360 | MS.gene053881:CDS | 55.0% | |
| TCTCTTCCTGGAAGGCTGAG+CGG | - | chr5.3:43775612-43775631 | None:intergenic | 55.0% | |
| TCTCTTCTTGGACGGCTGAG+GGG | - | chr5.3:43776535-43776554 | None:intergenic | 55.0% | |
| AACTAGGCAGGCAGAGAGGG+AGG | - | chr5.3:43775766-43775785 | None:intergenic | 60.0% | |
| ACGGCGGTGAGTGTGAGAAG+AGG | - | chr5.3:43775810-43775829 | None:intergenic | 60.0% | |
| ACTAGGCAGGCAGAGAGGGA+GGG | - | chr5.3:43775765-43775784 | None:intergenic | 60.0% | |
| CAGTTACCGCTCAGCCTTCC+AGG | + | chr5.3:43775603-43775622 | MS.gene053881:intron | 60.0% | |
| CCCTGGCAGTGATTGGGTCT+TGG | - | chr5.3:43776345-43776364 | None:intergenic | 60.0% | |
| CGGCGGTGAGTGTGAGAAGA+GGG | - | chr5.3:43775809-43775828 | None:intergenic | 60.0% | |
| TTAGAGCCGCCTCACTCTCC+AGG | + | chr5.3:43777423-43777442 | MS.gene053881:CDS | 60.0% | |
| ATCGGTCCTGGGCGGTGATC+GGG | - | chr5.3:43778134-43778153 | None:intergenic | 65.0% | |
| GATCGGTCCTGGGCGGTGAT+CGG | - | chr5.3:43778135-43778154 | None:intergenic | 65.0% | |
| AGGCAGGCAGAGAGGGAGGG+AGG | - | chr5.3:43775762-43775781 | None:intergenic | 70.0% | |
| CCAAGACCCGATCACCGCCC+AGG | + | chr5.3:43778125-43778144 | MS.gene053881:CDS | 70.0% | |
| CCTGGGCGGTGATCGGGTCT+TGG | - | chr5.3:43778128-43778147 | None:intergenic | 70.0% | |
| GGCAGGCAGAGAGGGAGGGA+GGG | - | chr5.3:43775761-43775780 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 43775452 | 43778310 | 43775452 | ID=MS.gene053881 |
| chr5.3 | mRNA | 43775452 | 43778310 | 43775452 | ID=MS.gene053881.t1;Parent=MS.gene053881 |
| chr5.3 | exon | 43775452 | 43775467 | 43775452 | ID=MS.gene053881.t1.exon1;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43775452 | 43775467 | 43775452 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43775935 | 43775998 | 43775935 | ID=MS.gene053881.t1.exon2;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43775935 | 43775998 | 43775935 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43776152 | 43776571 | 43776152 | ID=MS.gene053881.t1.exon3;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43776152 | 43776571 | 43776152 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43777011 | 43777444 | 43777011 | ID=MS.gene053881.t1.exon4;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43777011 | 43777444 | 43777011 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43777630 | 43777657 | 43777630 | ID=MS.gene053881.t1.exon5;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43777630 | 43777657 | 43777630 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43777766 | 43777813 | 43777766 | ID=MS.gene053881.t1.exon6;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43777766 | 43777813 | 43777766 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| chr5.3 | exon | 43777932 | 43778310 | 43777932 | ID=MS.gene053881.t1.exon7;Parent=MS.gene053881.t1 |
| chr5.3 | CDS | 43777932 | 43778310 | 43777932 | ID=cds.MS.gene053881.t1;Parent=MS.gene053881.t1 |
| Gene Sequence |
| Protein sequence |
