AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053886

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053886.t1 MTR_5g055100 86.076 237 32 1 1 236 1 237 4.32e-150 417
MS.gene053886.t1 MTR_2g085280 79.661 236 47 1 1 235 1 236 7.53e-138 386
MS.gene053886.t1 MTR_2g085250 79.661 236 47 1 1 235 1 236 3.03e-137 385
MS.gene053886.t1 MTR_5g045560 74.667 225 57 0 1 225 1 225 4.76e-119 339
MS.gene053886.t1 MTR_5g053390 74.222 225 58 0 1 225 1 225 4.26e-118 337
MS.gene053886.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 1.30e-110 317
MS.gene053886.t1 MTR_1g075600 69.778 225 68 0 1 225 1 225 2.40e-110 317
MS.gene053886.t1 MTR_8g043650 63.291 237 86 1 1 236 1 237 8.65e-108 310
MS.gene053886.t1 MTR_1g105920 66.667 219 73 0 1 219 1 219 1.17e-106 307
MS.gene053886.t1 MTR_1g012570 64.384 219 78 0 1 219 1 219 6.12e-102 295
MS.gene053886.t1 MTR_1g105910 61.778 225 86 0 1 225 1 225 2.35e-101 294
MS.gene053886.t1 MTR_2g030740 63.470 219 80 0 1 219 1 219 2.80e-101 294
MS.gene053886.t1 MTR_3g052920 62.557 219 82 0 1 219 1 219 4.36e-97 283
MS.gene053886.t1 MTR_0121s0080 58.475 236 98 0 1 236 1 236 6.99e-97 283
MS.gene053886.t1 MTR_1g105905 61.818 220 83 1 18 236 1 220 7.10e-97 282
MS.gene053886.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 5.94e-95 277
MS.gene053886.t1 MTR_1g108510 60.426 235 75 3 1 225 1 227 1.41e-92 271
MS.gene053886.t1 MTR_2g093190 59.574 235 77 3 1 225 1 227 1.06e-88 261
MS.gene053886.t1 MTR_1g108580 55.932 236 92 2 1 236 1 224 1.36e-85 254
MS.gene053886.t1 MTR_3g052870 57.991 219 73 2 1 219 1 200 5.57e-83 247
MS.gene053886.t1 MTR_7g062350 54.054 222 101 1 16 236 27 248 1.59e-79 239
MS.gene053886.t1 MTR_1g106070 62.637 182 68 0 1 182 1 182 1.10e-78 234
MS.gene053886.t1 MTR_1g075570 61.236 178 55 1 18 195 1 164 2.52e-61 190
MS.gene053886.t1 MTR_3g080940 48.315 178 92 0 1 178 1 178 5.63e-51 165
MS.gene053886.t1 MTR_0121s0100 63.281 128 47 0 1 128 1 128 8.53e-49 157
MS.gene053886.t1 MTR_3g067910 73.529 102 27 0 21 122 2 103 1.49e-47 153
MS.gene053886.t1 MTR_3g030780 61.789 123 47 0 1 123 1 123 3.63e-47 152
MS.gene053886.t1 MTR_3g067875 89.286 56 6 0 18 73 1 56 7.62e-30 106
MS.gene053886.t1 MTR_8g086290 36.145 166 96 2 5 167 8 166 4.33e-28 105
MS.gene053886.t1 MTR_7g028448 37.956 137 73 2 22 158 25 149 5.09e-28 105
MS.gene053886.t1 MTR_4g036915 37.956 137 73 2 22 158 25 149 5.09e-28 105
MS.gene053886.t1 MTR_3g067915 54.945 91 41 0 33 123 3 93 6.98e-26 97.1
MS.gene053886.t1 MTR_2g105290 32.184 174 106 2 5 174 8 173 8.63e-26 99.4
MS.gene053886.t1 MTR_3g067870 65.278 72 24 1 7 78 75 145 9.43e-25 96.3
MS.gene053886.t1 MTR_1g108500 67.164 67 19 1 5 71 96 159 8.74e-23 95.1
MS.gene053886.t1 MTR_1g047550 49.351 77 39 0 9 85 2 78 1.02e-21 89.0
MS.gene053886.t1 MTR_8g079502 52.113 71 34 0 9 79 2 72 2.21e-21 88.2
MS.gene053886.t1 MTR_4g131030 49.351 77 39 0 9 85 2 78 1.06e-20 87.0
MS.gene053886.t1 MTR_8g046350 33.951 162 95 4 9 165 2 156 1.11e-20 85.9
MS.gene053886.t1 MTR_8g051580 50.704 71 35 0 9 79 2 72 8.96e-20 84.0
MS.gene053886.t1 MTR_1g054265 45.570 79 43 0 9 87 2 80 2.09e-19 82.4
MS.gene053886.t1 MTR_1g063160 37.736 106 64 1 9 112 2 107 5.74e-19 81.6
MS.gene053886.t1 MTR_4g127140 34.574 188 95 6 5 175 8 184 3.39e-18 79.7
MS.gene053886.t1 MTR_4g093970 40.708 113 47 3 11 104 30 141 1.30e-17 79.3
MS.gene053886.t1 MTR_4g102530 50.000 70 35 0 12 81 5 74 2.49e-17 77.8
MS.gene053886.t1 MTR_4g094638 52.174 69 33 0 9 77 2 70 3.35e-17 77.0
MS.gene053886.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 4.84e-17 77.4
MS.gene053886.t1 MTR_4g094632 50.725 69 34 0 9 77 2 70 1.15e-16 75.1
MS.gene053886.t1 MTR_3g452380 41.667 84 49 0 3 86 11 94 2.50e-16 75.9
MS.gene053886.t1 MTR_8g033270 49.367 79 38 1 9 85 2 80 4.82e-16 75.1
MS.gene053886.t1 MTR_7g075870 52.308 65 31 0 12 76 5 69 6.68e-16 73.9
MS.gene053886.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 7.77e-16 74.7
MS.gene053886.t1 MTR_5g066180 50.000 66 33 0 11 76 4 69 1.08e-15 73.9
MS.gene053886.t1 MTR_8g033220 46.575 73 39 0 12 84 5 77 1.10e-15 73.9
MS.gene053886.t1 MTR_8g033220 46.575 73 39 0 12 84 5 77 1.12e-15 73.9
MS.gene053886.t1 MTR_4g109830 50.725 69 33 1 9 76 2 70 1.23e-15 73.9
MS.gene053886.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 3.42e-15 72.8
MS.gene053886.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 5.06e-15 72.4
MS.gene053886.t1 MTR_2g009890 40.506 79 47 0 9 87 2 80 5.20e-15 72.8
MS.gene053886.t1 MTR_5g032150 50.000 66 33 0 11 76 4 69 5.45e-15 72.0
MS.gene053886.t1 MTR_5g032520 50.000 66 33 0 11 76 4 69 6.51e-15 71.6
MS.gene053886.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 6.72e-15 72.0
MS.gene053886.t1 MTR_2g017865 48.529 68 35 0 9 76 17 84 8.34e-15 72.0
MS.gene053886.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 8.40e-15 70.5
MS.gene053886.t1 MTR_7g075870 51.515 66 31 1 12 76 5 70 1.07e-14 70.9
MS.gene053886.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 1.85e-14 71.6
MS.gene053886.t1 MTR_3g102570 34.559 136 82 3 9 143 2 131 2.29e-14 71.2
MS.gene053886.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 3.37e-14 70.1
MS.gene053886.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 4.02e-14 70.1
MS.gene053886.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 4.09e-14 69.3
MS.gene053886.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 4.15e-14 69.7
MS.gene053886.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 4.84e-14 69.7
MS.gene053886.t1 MTR_7g016630 44.444 72 39 1 9 79 2 73 6.14e-14 69.3
MS.gene053886.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.93e-14 68.9
MS.gene053886.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 7.53e-14 68.9
MS.gene053886.t1 MTR_5g046790 46.377 69 36 1 9 76 2 70 8.27e-14 68.6
MS.gene053886.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 8.84e-14 67.8
MS.gene053886.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 1.63e-13 67.8
MS.gene053886.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 1.92e-13 66.6
MS.gene053886.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 2.38e-13 63.5
MS.gene053886.t1 MTR_5g046870 48.485 66 33 1 12 76 5 70 4.00e-13 64.3
MS.gene053886.t1 MTR_3g113030 46.269 67 34 1 12 76 5 71 4.13e-13 66.6
MS.gene053886.t1 MTR_7g075850 45.122 82 42 2 9 87 2 83 4.89e-13 67.0
MS.gene053886.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 5.39e-13 62.4
MS.gene053886.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 2.22e-12 65.1
MS.gene053886.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 3.02e-12 64.7
MS.gene053886.t1 MTR_3g084980 51.786 56 27 0 9 64 2 57 3.79e-12 64.3
MS.gene053886.t1 MTR_8g022970 30.435 161 81 5 13 158 22 166 5.09e-12 63.2
MS.gene053886.t1 MTR_4g051538 27.485 171 99 7 23 181 23 180 1.36e-11 62.8
MS.gene053886.t1 MTR_3g437790 30.345 145 78 4 26 158 30 163 1.41e-11 61.6
MS.gene053886.t1 MTR_4g093030 28.947 152 83 4 9 135 2 153 2.12e-11 60.8
MS.gene053886.t1 MTR_3g109930 30.625 160 95 6 27 178 20 171 2.61e-11 60.8
MS.gene053886.t1 MTR_4g036050 41.791 67 38 1 12 77 5 71 4.15e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053886.t1 AT5G60440 49.474 190 85 5 5 190 3 185 8.91e-49 162
MS.gene053886.t1 AT1G65360 40.000 225 120 6 5 223 3 218 3.89e-40 138
MS.gene053886.t1 AT1G01530 42.487 193 93 6 4 191 2 181 6.67e-37 130
MS.gene053886.t1 AT2G24840 46.250 160 77 3 9 163 63 218 9.13e-37 130
MS.gene053886.t1 AT4G36590 43.452 168 77 5 5 160 3 164 7.36e-34 122
MS.gene053886.t1 AT3G04100 30.435 161 108 2 2 158 7 167 7.71e-24 95.1
MS.gene053886.t1 AT1G72350 34.078 179 74 6 9 182 43 182 1.33e-20 87.0
MS.gene053886.t1 AT2G34440 49.296 71 36 0 9 79 2 72 7.98e-20 83.6
MS.gene053886.t1 AT3G66656 54.412 68 31 0 9 76 2 69 3.64e-19 82.0
MS.gene053886.t1 AT2G45660 54.545 66 30 0 12 77 5 70 1.90e-18 79.7
MS.gene053886.t1 AT2G45660 54.545 66 30 0 12 77 5 70 6.52e-18 79.7
MS.gene053886.t1 AT4G37940 32.571 175 83 6 9 154 2 170 7.93e-18 79.3
MS.gene053886.t1 AT5G51870 56.923 65 28 0 12 76 5 69 9.34e-18 78.2
MS.gene053886.t1 AT1G28460 28.916 166 111 2 5 163 4 169 1.25e-17 78.2
MS.gene053886.t1 AT5G51870 54.167 72 33 0 5 76 21 92 1.26e-17 78.6
MS.gene053886.t1 AT4G22950 48.571 70 36 0 12 81 5 74 1.30e-17 77.8
MS.gene053886.t1 AT5G51870 56.923 65 28 0 12 76 5 69 1.39e-17 78.6
MS.gene053886.t1 AT2G45650 54.412 68 31 0 9 76 2 69 1.60e-17 79.3
MS.gene053886.t1 AT5G51870 56.923 65 28 0 12 76 5 69 2.21e-17 78.2
MS.gene053886.t1 AT5G51870 56.923 65 28 0 12 76 15 79 2.53e-17 78.6
MS.gene053886.t1 AT4G22950 49.275 69 35 0 12 80 5 73 5.08e-17 77.4
MS.gene053886.t1 AT4G22950 49.275 69 35 0 12 80 5 73 5.08e-17 77.4
MS.gene053886.t1 AT4G37940 32.240 183 87 7 9 154 2 184 7.43e-17 77.0
MS.gene053886.t1 AT1G29962 27.119 177 115 4 5 167 4 180 7.56e-17 76.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.22e-16 74.7
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.22e-16 74.7
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.22e-16 74.7
MS.gene053886.t1 AT3G57230 27.397 219 108 8 9 181 2 215 1.25e-16 76.6
MS.gene053886.t1 AT3G57230 27.397 219 108 8 9 181 2 215 1.25e-16 76.6
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.34e-16 73.6
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.40e-16 76.3
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 2 69 1.45e-16 76.3
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 3 70 1.56e-16 76.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.60e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.60e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.60e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.60e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 1.60e-16 74.3
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 12 79 1.97e-16 76.3
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 28 95 2.41e-16 76.3
MS.gene053886.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.63e-16 74.3
MS.gene053886.t1 AT5G10140 50.725 69 33 1 9 76 2 70 3.75e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 4.01e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 4.01e-16 74.3
MS.gene053886.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.18e-16 74.3
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 4.31e-16 74.7
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 4.31e-16 74.7
MS.gene053886.t1 AT5G62165 52.308 65 31 0 12 76 5 69 4.31e-16 74.7
MS.gene053886.t1 AT4G09960 48.529 68 35 0 9 76 97 164 5.49e-16 76.3
MS.gene053886.t1 AT5G10140 50.725 69 33 1 9 76 2 70 5.65e-16 73.9
MS.gene053886.t1 AT3G57230 45.588 68 37 0 9 76 2 69 5.96e-16 72.8
MS.gene053886.t1 AT3G57390 52.941 68 32 0 9 76 2 69 8.02e-16 74.3
MS.gene053886.t1 AT2G22540 41.489 94 50 1 11 99 4 97 8.32e-16 74.3
MS.gene053886.t1 AT2G22540 41.489 94 50 1 11 99 4 97 8.32e-16 74.3
MS.gene053886.t1 AT5G51860 52.308 65 31 0 12 76 5 69 9.19e-16 73.6
MS.gene053886.t1 AT3G54340 50.746 67 31 1 12 76 5 71 1.02e-15 73.9
MS.gene053886.t1 AT5G23260 35.570 149 68 5 5 125 14 162 1.13e-15 74.7
MS.gene053886.t1 AT5G51860 52.308 65 31 0 12 76 5 69 1.19e-15 73.6
MS.gene053886.t1 AT3G30260 29.452 146 73 3 9 124 2 147 1.49e-15 73.9
MS.gene053886.t1 AT2G22630 30.055 183 91 4 9 154 2 184 1.63e-15 73.6
MS.gene053886.t1 AT2G22630 30.055 183 91 4 9 154 2 184 1.63e-15 73.6
MS.gene053886.t1 AT4G18960 46.667 75 40 0 2 76 11 85 1.84e-15 73.6
MS.gene053886.t1 AT4G24540 53.030 66 31 0 11 76 4 69 1.98e-15 73.2
MS.gene053886.t1 AT3G57390 52.941 68 32 0 9 76 2 69 2.04e-15 73.6
MS.gene053886.t1 AT2G42830 44.737 76 42 0 1 76 9 84 2.69e-15 73.2
MS.gene053886.t1 AT4G37940 47.059 68 36 0 9 76 2 69 2.75e-15 71.6
MS.gene053886.t1 AT2G42830 44.737 76 42 0 1 76 9 84 2.81e-15 73.2
MS.gene053886.t1 AT3G58780 47.887 71 37 0 6 76 14 84 3.39e-15 72.8
MS.gene053886.t1 AT3G58780 47.887 71 37 0 6 76 20 90 3.53e-15 72.8
MS.gene053886.t1 AT5G13790 50.000 68 34 0 9 76 2 69 3.67e-15 73.2
MS.gene053886.t1 AT5G23260 35.862 145 65 5 9 125 2 146 3.92e-15 72.8
MS.gene053886.t1 AT5G13790 50.000 68 34 0 9 76 2 69 3.99e-15 73.2
MS.gene053886.t1 AT1G77980 49.296 71 35 1 9 78 2 72 6.48e-15 73.2
MS.gene053886.t1 AT3G58780 47.887 71 37 0 6 76 14 84 6.66e-15 72.4
MS.gene053886.t1 AT5G23260 44.565 92 45 2 5 90 14 105 7.05e-15 72.4
MS.gene053886.t1 AT4G11880 48.571 70 35 1 12 80 5 74 9.31e-15 70.5
MS.gene053886.t1 AT4G11880 48.571 70 35 1 12 80 5 74 9.31e-15 70.5
MS.gene053886.t1 AT1G17310 54.237 59 25 1 25 83 64 120 1.26e-14 70.9
MS.gene053886.t1 AT4G11880 48.571 70 35 1 12 80 5 74 1.40e-14 70.9
MS.gene053886.t1 AT4G11880 48.571 70 35 1 12 80 5 74 1.40e-14 70.9
MS.gene053886.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.51e-14 69.7
MS.gene053886.t1 AT1G22130 38.384 99 60 1 9 106 2 100 1.60e-14 72.0
MS.gene053886.t1 AT1G17310 54.237 59 25 1 25 83 75 131 1.81e-14 70.5
MS.gene053886.t1 AT5G23260 45.455 88 42 2 9 90 2 89 2.81e-14 70.1
MS.gene053886.t1 AT2G14210 47.826 69 35 1 9 76 2 70 2.83e-14 70.1
MS.gene053886.t1 AT5G60910 47.826 69 35 1 9 76 2 70 2.91e-14 70.1
MS.gene053886.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.97e-14 69.3
MS.gene053886.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.99e-14 69.3
MS.gene053886.t1 AT5G65050 49.275 69 34 1 9 76 2 70 3.01e-14 68.9
MS.gene053886.t1 AT3G61120 50.000 68 34 0 9 76 2 69 3.05e-14 70.1
MS.gene053886.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.21e-14 70.1
MS.gene053886.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.21e-14 70.1
MS.gene053886.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.21e-14 70.1
MS.gene053886.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.21e-14 70.1
MS.gene053886.t1 AT2G14210 47.826 69 35 1 9 76 2 70 4.37e-14 69.7
MS.gene053886.t1 AT1G28450 27.811 169 112 4 5 163 4 172 5.19e-14 68.6
MS.gene053886.t1 AT1G69120 41.250 80 46 1 9 87 2 81 5.82e-14 69.3
MS.gene053886.t1 AT1G26310 41.250 80 46 1 9 87 2 81 5.99e-14 69.7
MS.gene053886.t1 AT5G15800 49.275 69 34 1 9 76 2 70 8.25e-14 68.9
MS.gene053886.t1 AT1G69120 41.250 80 46 1 9 87 2 81 1.29e-13 68.6
MS.gene053886.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.60e-13 68.6
MS.gene053886.t1 AT2G22540 40.426 94 46 2 11 99 4 92 1.96e-13 67.8
MS.gene053886.t1 AT5G65060 47.826 69 35 1 9 76 2 70 2.05e-13 67.0
MS.gene053886.t1 AT5G65060 47.826 69 35 1 9 76 2 70 2.31e-13 67.0
MS.gene053886.t1 AT5G65060 47.826 69 35 1 9 76 2 70 2.33e-13 67.0
MS.gene053886.t1 AT1G71692 47.761 67 34 1 12 77 5 71 3.00e-13 67.0
MS.gene053886.t1 AT2G03710 45.570 79 41 2 9 85 2 80 3.32e-13 66.2
MS.gene053886.t1 AT5G20240 45.714 70 36 1 9 76 2 71 3.72e-13 66.6
MS.gene053886.t1 AT5G20240 45.714 70 36 1 9 76 2 71 4.09e-13 65.1
MS.gene053886.t1 AT2G03710 45.570 79 41 2 9 85 2 80 9.53e-13 66.2
MS.gene053886.t1 AT2G03710 45.570 79 41 2 9 85 2 80 1.02e-12 66.2
MS.gene053886.t1 AT3G58780 49.180 61 31 0 6 66 14 74 1.52e-12 65.5
MS.gene053886.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.57e-12 63.5
MS.gene053886.t1 AT3G02310 44.928 69 37 1 9 76 2 70 1.76e-12 64.7
MS.gene053886.t1 AT3G58780 49.180 61 31 0 6 66 14 74 2.13e-12 65.5
MS.gene053886.t1 AT1G24260 46.377 69 36 1 9 76 2 70 2.15e-12 65.1
MS.gene053886.t1 AT1G24260 46.377 69 36 1 9 76 2 70 2.26e-12 65.1
MS.gene053886.t1 AT1G24260 46.377 69 36 1 9 76 2 70 2.26e-12 65.1
MS.gene053886.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.46e-12 64.3
MS.gene053886.t1 AT5G65070 38.372 86 51 2 9 92 2 87 2.88e-12 64.7
MS.gene053886.t1 AT3G02310 44.928 69 37 1 9 76 2 70 3.22e-12 64.7
MS.gene053886.t1 AT5G65070 38.372 86 51 2 9 92 2 87 3.52e-12 63.9
MS.gene053886.t1 AT1G47760 32.353 102 61 1 9 102 2 103 3.87e-12 63.2
MS.gene053886.t1 AT5G65070 47.368 57 30 0 9 65 2 58 3.81e-11 61.2
MS.gene053886.t1 AT5G65080 38.961 77 46 1 1 76 1 77 5.37e-11 60.5

Find 56 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGATGACATCATTT+TGG 0.153672 5.3:+43731377 None:intergenic
GACCTTATTCATCTCATAAA+TGG 0.175011 5.3:+43731207 None:intergenic
GAACCATTTACAACATAAAA+TGG 0.248337 5.3:+43731085 None:intergenic
TCTATGATCGTTTCAACATT+TGG 0.289536 5.3:+43731424 None:intergenic
GCTGAATCTTGTTGAGGATT+TGG 0.301044 5.3:+43731034 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.302139 5.3:+43731095 None:intergenic
TTGTTGAAACCAAACAAATA+AGG 0.314433 5.3:+43730974 None:intergenic
ATGTTGCAACCTTATTTGTT+TGG 0.345480 5.3:-43730983 MS.gene053886:CDS
AACATAAAATGGAAGGGTTT+GGG 0.360113 5.3:+43731096 None:intergenic
AGATAAATCAGGAACAGTTT+TGG 0.363448 5.3:-43731240 MS.gene053886:CDS
TTGTTTGGTTTCAACAATAT+AGG 0.376703 5.3:-43730968 MS.gene053886:CDS
TGAATTATACAAGAAGGCTT+TGG 0.386209 5.3:-43731179 MS.gene053886:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5.3:+43731208 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5.3:-43731209 MS.gene053886:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5.3:-43731505 MS.gene053886:CDS
AACAAATAAGGTTGCAACAT+AGG 0.449382 5.3:+43730986 None:intergenic
TGCTGATGGGGTTGAAATGC+AGG 0.458337 5.3:-43731128 MS.gene053886:CDS
CCTGATTTATCTTTCGCACC+TGG 0.470215 5.3:+43731251 None:intergenic
CCAGGTGCGAAAGATAAATC+AGG 0.478066 5.3:-43731251 MS.gene053886:CDS
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5.3:+43731185 None:intergenic
ACAAATAAGGTTGCAACATA+GGG 0.494926 5.3:+43730987 None:intergenic
TGTCATCATGCAATTAATTG+AGG 0.500620 5.3:-43731368 MS.gene053886:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 5.3:+43731341 None:intergenic
ATTATACAAGAAGGCTTTGG+AGG 0.515397 5.3:-43731176 MS.gene053886:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 5.3:+43731492 None:intergenic
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 5.3:-43731334 MS.gene053886:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 5.3:+43731333 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5.3:-43731185 MS.gene053886:CDS
GAAGGTGGACATGGTCCCCA+TGG 0.540091 5.3:-43730944 MS.gene053886:CDS
GGTTTCAACAATATAGGAGA+AGG 0.541234 5.3:-43730962 MS.gene053886:CDS
GAGCTCAATGGTATATTGAC+TGG 0.544330 5.3:-43731322 MS.gene053886:CDS
CATTTACAACATAAAATGGA+AGG 0.549969 5.3:+43731089 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.3:-43731543 MS.gene053886:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5.3:-43731269 MS.gene053886:CDS
GGATTTGGCTGATGCTCAAG+AGG 0.568099 5.3:+43731049 None:intergenic
GCTCATATCAAAAGAACCCA+TGG 0.571548 5.3:+43730927 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.3:-43731544 MS.gene053886:CDS
ATTTACAACATAAAATGGAA+GGG 0.573802 5.3:+43731090 None:intergenic
TTGTTGCACAACATGCTGAT+GGG 0.576174 5.3:-43731141 MS.gene053886:CDS
CTTGTTGCACAACATGCTGA+TGG 0.590419 5.3:-43731142 MS.gene053886:CDS
GGAAAGGCTGAATCTTGTTG+AGG 0.594539 5.3:+43731028 None:intergenic
TTCAACAATATAGGAGAAGG+TGG 0.597803 5.3:-43730959 MS.gene053886:CDS
CTCATATCAAAAGAACCCAT+GGG 0.612341 5.3:+43730928 None:intergenic
AATGAAAATACTTTCTCACT+AGG 0.614392 5.3:+43731454 None:intergenic
AATATAGGAGAAGGTGGACA+TGG 0.617303 5.3:-43730953 MS.gene053886:CDS
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5.3:-43731634 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.619822 5.3:-43730943 MS.gene053886:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5.3:+43731269 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.3:+43731530 None:intergenic
GAGCAATATATGCACCACAA+AGG 0.629097 5.3:+43731491 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5.3:-43731350 MS.gene053886:CDS
TGTTGCACAACATGCTGATG+GGG 0.659305 5.3:-43731140 MS.gene053886:CDS
ATGCTCAAGAGGAATGCTAG+AGG 0.682270 5.3:+43731060 None:intergenic
TCAAGCGGAAAGAAAACACA+AGG 0.697211 5.3:-43731619 MS.gene053886:CDS
GCTGATGGGGTTGAAATGCA+GGG 0.707160 5.3:-43731127 MS.gene053886:CDS
TCATATCAAAAGAACCCATG+GGG 0.745957 5.3:+43730929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACAACATAAAATGGAA+GGG + chr5.3:43731469-43731488 None:intergenic 20.0%
! AATGAAAATACTTTCTCACT+AGG + chr5.3:43731105-43731124 None:intergenic 25.0%
! ACCTTATTCATCTCATAAAT+GGG + chr5.3:43731351-43731370 None:intergenic 25.0%
! CATTTACAACATAAAATGGA+AGG + chr5.3:43731470-43731489 None:intergenic 25.0%
! GAACCATTTACAACATAAAA+TGG + chr5.3:43731474-43731493 None:intergenic 25.0%
! TTGTTGAAACCAAACAAATA+AGG + chr5.3:43731585-43731604 None:intergenic 25.0%
!! CTTCCATTTTATGTTGTAAA+TGG - chr5.3:43731468-43731487 MS.gene053886:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+AGG - chr5.3:43731588-43731607 MS.gene053886:CDS 25.0%
!!! AGTGAGAAAGTATTTTCATT+TGG - chr5.3:43731105-43731124 MS.gene053886:CDS 25.0%
AACAAATAAGGTTGCAACAT+AGG + chr5.3:43731573-43731592 None:intergenic 30.0%
AACATAAAATGGAAGGGTTT+GGG + chr5.3:43731463-43731482 None:intergenic 30.0%
ACAAATAAGGTTGCAACATA+GGG + chr5.3:43731572-43731591 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr5.3:43731371-43731390 MS.gene053886:CDS 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr5.3:43731374-43731393 None:intergenic 30.0%
GACCTTATTCATCTCATAAA+TGG + chr5.3:43731352-43731371 None:intergenic 30.0%
TCCCATTTATGAGATGAATA+AGG - chr5.3:43731347-43731366 MS.gene053886:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr5.3:43731135-43731154 None:intergenic 30.0%
TGAATTATACAAGAAGGCTT+TGG - chr5.3:43731377-43731396 MS.gene053886:CDS 30.0%
TGTCATCATGCAATTAATTG+AGG - chr5.3:43731188-43731207 MS.gene053886:CDS 30.0%
! AGATAAATCAGGAACAGTTT+TGG - chr5.3:43731316-43731335 MS.gene053886:CDS 30.0%
! ATGTTGCAACCTTATTTGTT+TGG - chr5.3:43731573-43731592 MS.gene053886:CDS 30.0%
! ATTGCATGATGACATCATTT+TGG + chr5.3:43731182-43731201 None:intergenic 30.0%
! TTGCATGATGACATCATTTT+GGG + chr5.3:43731181-43731200 None:intergenic 30.0%
AGCAATATATGCACCACAAA+GGG + chr5.3:43731067-43731086 None:intergenic 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr5.3:43731464-43731483 None:intergenic 35.0%
GGTTTCAACAATATAGGAGA+AGG - chr5.3:43731594-43731613 MS.gene053886:CDS 35.0%
TTCAACAATATAGGAGAAGG+TGG - chr5.3:43731597-43731616 MS.gene053886:CDS 35.0%
! ATTATACAAGAAGGCTTTGG+AGG - chr5.3:43731380-43731399 MS.gene053886:CDS 35.0%
!! TAAATCAGGAACAGTTTTGG+TGG - chr5.3:43731319-43731338 MS.gene053886:CDS 35.0%
AATATAGGAGAAGGTGGACA+TGG - chr5.3:43731603-43731622 MS.gene053886:CDS 40.0%
CTGAAAAAACTCTGCTGGAA+AGG + chr5.3:43731547-43731566 None:intergenic 40.0%
GAGCAATATATGCACCACAA+AGG + chr5.3:43731068-43731087 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr5.3:43731234-43731253 MS.gene053886:CDS 40.0%
GCTGAATCTTGTTGAGGATT+TGG + chr5.3:43731525-43731544 None:intergenic 40.0%
TCAAGCGGAAAGAAAACACA+AGG - chr5.3:43730937-43730956 MS.gene053886:CDS 40.0%
TTGTTGCACAACATGCTGAT+GGG - chr5.3:43731415-43731434 MS.gene053886:CDS 40.0%
! ATGATGACATCATTTTGGGC+TGG + chr5.3:43731177-43731196 None:intergenic 40.0%
ATGCTCAAGAGGAATGCTAG+AGG + chr5.3:43731499-43731518 None:intergenic 45.0%
CCAGGTGCGAAAGATAAATC+AGG - chr5.3:43731305-43731324 MS.gene053886:CDS 45.0%
CCTGATTTATCTTTCGCACC+TGG + chr5.3:43731308-43731327 None:intergenic 45.0%
CTTGTTGCACAACATGCTGA+TGG - chr5.3:43731414-43731433 MS.gene053886:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr5.3:43731029-43731048 None:intergenic 45.0%
GGAAAGGCTGAATCTTGTTG+AGG + chr5.3:43731531-43731550 None:intergenic 45.0%
TGTTGCACAACATGCTGATG+GGG - chr5.3:43731416-43731435 MS.gene053886:CDS 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr5.3:43731290-43731309 None:intergenic 45.0%
!! GGGTTCTGAAAAAACTCTGC+TGG + chr5.3:43731552-43731571 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr5.3:43731051-43731070 MS.gene053886:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr5.3:43731287-43731306 MS.gene053886:CDS 50.0%
GCTGATGGGGTTGAAATGCA+GGG - chr5.3:43731429-43731448 MS.gene053886:CDS 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr5.3:43731510-43731529 None:intergenic 50.0%
TGAGGATTACCGTAGAGCCA+AGG - chr5.3:43731206-43731225 MS.gene053886:CDS 50.0%
TGCTGATGGGGTTGAAATGC+AGG - chr5.3:43731428-43731447 MS.gene053886:CDS 50.0%
AAGGTGGACATGGTCCCCAT+GGG - chr5.3:43731613-43731632 MS.gene053886:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr5.3:43731012-43731031 MS.gene053886:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr5.3:43731013-43731032 MS.gene053886:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr5.3:43731226-43731245 None:intergenic 60.0%
GAAGGTGGACATGGTCCCCA+TGG - chr5.3:43731612-43731631 MS.gene053886:CDS 60.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr5.3:43731222-43731241 MS.gene053886:CDS 65.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr5.3:43731218-43731237 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 43730934 43731644 43730934 ID=MS.gene053886
chr5.3 mRNA 43730934 43731644 43730934 ID=MS.gene053886.t1;Parent=MS.gene053886
chr5.3 exon 43730934 43731644 43730934 ID=MS.gene053886.t1.exon1;Parent=MS.gene053886.t1
chr5.3 CDS 43730934 43731644 43730934 ID=cds.MS.gene053886.t1;Parent=MS.gene053886.t1
Gene Sequence

>MS.gene053886

ATGTCAAGCGGAAAGAAAACACAAGGTTGCAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTATCTCTCTCAAGTTCCAGCCCAAAATGATGTCATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCTGCATCGATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGATAAATCAGGAACAGTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTGGAGGATCTTCTGAAACTTGTTGCACAACATGCTGATGGGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGTAAATGGTTCATCCTCTAGCATTCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAGCCTTTCCAGCAGAGTTTTTTCAGAACCCTATGTTGCAACCTTATTTGTTTGGTTTCAACAATATAGGAGAAGGTGGACATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene053886.t1

MSSGKKTQGCKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNVETIIDRYLSQVPAQNDVIMQLIEDYRRAKVRELNGILTGMKDAICIDKNRENELIQVRKINQEQFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADGVEMQGTSTQTLPFYVVNGSSSSIPLEHQPNPQQDSAFPAEFFQNPMLQPYLFGFNNIGEGGHGPHGFF