Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053906.t1 | XP_003614458.1 | 81.7 | 131 | 24 | 0 | 1 | 131 | 1 | 131 | 3.30E-41 | 178.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053906.t1 | A2XID3 | 55.4 | 83 | 28 | 2 | 63 | 136 | 50 | 132 | 2.4e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053906.t1 | Q711Q9 | 81.7 | 131 | 24 | 0 | 1 | 131 | 1 | 131 | 2.4e-41 | 178.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053906 | MS.gene31648 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene053906 | MS.gene49467 | 0.805027 | 1.63E-49 | -1.69E-46 |
| MS.gene053906 | MS.gene88254 | 0.83918 | 1.85E-57 | -1.69E-46 |
| MS.gene053906 | MS.gene88255 | 0.808074 | 3.70E-50 | -1.69E-46 |
| MS.gene053906 | MS.gene94231 | 0.809064 | 2.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053906.t1 | MTR_5g053950 | 90.840 | 131 | 12 | 0 | 1 | 131 | 1 | 131 | 1.45e-80 | 240 |
| MS.gene053906.t1 | MTR_7g417750 | 53.704 | 108 | 36 | 2 | 36 | 131 | 23 | 128 | 3.16e-26 | 100 |
| MS.gene053906.t1 | MTR_4g069020 | 69.697 | 66 | 20 | 0 | 66 | 131 | 71 | 136 | 5.73e-24 | 95.1 |
| MS.gene053906.t1 | MTR_6g017165 | 71.212 | 66 | 19 | 0 | 66 | 131 | 63 | 128 | 1.52e-23 | 93.6 |
| MS.gene053906.t1 | MTR_6g017155 | 69.355 | 62 | 19 | 0 | 70 | 131 | 66 | 127 | 2.73e-20 | 85.5 |
| MS.gene053906.t1 | MTR_8g062760 | 64.706 | 51 | 18 | 0 | 66 | 116 | 58 | 108 | 2.00e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053906.t1 | AT3G25780 | 55.556 | 81 | 30 | 3 | 61 | 140 | 66 | 141 | 3.46e-19 | 82.8 |
| MS.gene053906.t1 | AT3G25770 | 53.425 | 73 | 30 | 1 | 68 | 140 | 68 | 136 | 2.62e-15 | 72.0 |
| MS.gene053906.t1 | AT1G13280 | 54.412 | 68 | 26 | 2 | 74 | 140 | 74 | 137 | 3.38e-15 | 71.6 |
| MS.gene053906.t1 | AT3G25760 | 53.731 | 67 | 27 | 1 | 74 | 140 | 75 | 137 | 8.50e-14 | 68.2 |
Find 22 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTCTTGATGCTGCTTT+TGG | 0.258177 | 5.3:-43214150 | None:intergenic |
| TGTATTCTTAGAACTTCTTT+TGG | 0.308042 | 5.3:-43214101 | None:intergenic |
| TTGAAGCACAAAACAGCTTC+TGG | 0.315486 | 5.3:-43216399 | None:intergenic |
| CACTGGAATCCGATTCTGTT+TGG | 0.339434 | 5.3:+43216422 | MS.gene053906:CDS |
| TTTGAAGAGGAGAGGTAGAA+AGG | 0.367019 | 5.3:-43213988 | None:intergenic |
| CAAACTCTACTCAGGAAACT+TGG | 0.405570 | 5.3:+43214406 | MS.gene053906:CDS |
| GAGGAGAGGTAGAAAGGTTG+AGG | 0.414060 | 5.3:-43213982 | None:intergenic |
| ATTCTGTTTGGTTTCCTTTG+TGG | 0.420482 | 5.3:+43216434 | MS.gene053906:CDS |
| TTTGGTTGTAGATGCTTGCT+TGG | 0.457390 | 5.3:-43214083 | None:intergenic |
| TGACTTAGTCTAAGGTATGC+AGG | 0.462035 | 5.3:-43214341 | None:intergenic |
| AGGAGAGGTAGAAAGGTTGA+GGG | 0.462699 | 5.3:-43213981 | None:intergenic |
| GAAATTTCTTCTACTTGTGA+AGG | 0.484237 | 5.3:-43214047 | None:intergenic |
| GAGCTTGTGTTGTTGAAGCT+TGG | 0.489807 | 5.3:+43216469 | MS.gene053906:CDS |
| TTGTTGAAGCTTGGCGATGT+TGG | 0.502537 | 5.3:+43216478 | MS.gene053906:CDS |
| CATCAAGAATCTTCAAAGCC+AGG | 0.509124 | 5.3:+43214160 | MS.gene053906:CDS |
| CAAAGGAAACCAAACAGAAT+CGG | 0.516170 | 5.3:-43216431 | None:intergenic |
| GAGTAGAGTTTGTTGCTGAA+TGG | 0.523603 | 5.3:-43214395 | None:intergenic |
| GCTATTGAAGAAGAATGCAT+TGG | 0.528323 | 5.3:-43214128 | None:intergenic |
| AGAGACTAGAAGTAACTACT+TGG | 0.552750 | 5.3:-43214018 | None:intergenic |
| TTCAGCAACAAACTCTACTC+AGG | 0.581768 | 5.3:+43214398 | MS.gene053906:CDS |
| AAGCTTCAACAACACAAGCT+CGG | 0.595334 | 5.3:-43216467 | None:intergenic |
| GAGATCAATGAACGTGACAG+AGG | 0.683505 | 5.3:+43214314 | MS.gene053906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATATTAAAAAAATGTT+CGG | - | chr5.3:43215119-43215138 | None:intergenic | 10.0% |
| !!! | AAGAAACATAATTTTTTTTT+TGG | + | chr5.3:43215953-43215972 | MS.gene053906:intron | 10.0% |
| !! | ATGAAATTATTATTGTTAGA+TGG | + | chr5.3:43217360-43217379 | MS.gene053906:intron | 15.0% |
| !! | CATTTATAAACTAAATGAAA+AGG | - | chr5.3:43217998-43218017 | None:intergenic | 15.0% |
| !! | TTAGAAATTATTTATGTGTT+AGG | + | chr5.3:43214923-43214942 | MS.gene053906:intron | 15.0% |
| !!! | AAACTATTACACAATTATTT+TGG | - | chr5.3:43217337-43217356 | None:intergenic | 15.0% |
| !!! | AACAACTACAATTTATTTTT+TGG | - | chr5.3:43214858-43214877 | None:intergenic | 15.0% |
| !!! | CTTCAATTTTGATATAAATT+GGG | + | chr5.3:43216843-43216862 | MS.gene053906:intron | 15.0% |
| !!! | TTATTAAGTGTCATTAAAAA+TGG | - | chr5.3:43216788-43216807 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATTTCTTTGTT+TGG | + | chr5.3:43217172-43217191 | MS.gene053906:intron | 15.0% |
| !! | AAAAGCAATCATTATTTCAA+TGG | + | chr5.3:43218178-43218197 | MS.gene053906:intron | 20.0% |
| !! | AAACCAAAATAATTGTCTAA+TGG | + | chr5.3:43217469-43217488 | MS.gene053906:intron | 20.0% |
| !! | AAACCATAATTATGGTTTAA+TGG | + | chr5.3:43217426-43217445 | MS.gene053906:intron | 20.0% |
| !! | AAACCATTAAACCATAATTA+TGG | - | chr5.3:43217432-43217451 | None:intergenic | 20.0% |
| !! | AGAAGAAACATAATTTGATA+TGG | + | chr5.3:43215980-43215999 | MS.gene053906:intron | 20.0% |
| !! | AGATTGAATAATGATATGAT+TGG | - | chr5.3:43215794-43215813 | None:intergenic | 20.0% |
| !! | CCAATTTATATCAAAATTGA+AGG | - | chr5.3:43216845-43216864 | None:intergenic | 20.0% |
| !! | TATATCAAAATTGAAGGAAT+GGG | - | chr5.3:43216839-43216858 | None:intergenic | 20.0% |
| !! | TATTACTGAAACCATAATTA+TGG | + | chr5.3:43217418-43217437 | MS.gene053906:intron | 20.0% |
| !! | TTATATCAAAATTGAAGGAA+TGG | - | chr5.3:43216840-43216859 | None:intergenic | 20.0% |
| !!! | AAACCATTAGACAATTATTT+TGG | - | chr5.3:43217475-43217494 | None:intergenic | 20.0% |
| !!! | AAATTTTGTTTTGCCAATTT+GGG | - | chr5.3:43216120-43216139 | None:intergenic | 20.0% |
| !!! | AACTCAAATAGTTTAATTTC+AGG | + | chr5.3:43217028-43217047 | MS.gene053906:intron | 20.0% |
| !!! | AATAGTTTAATTTCAGGAAA+TGG | + | chr5.3:43217034-43217053 | MS.gene053906:intron | 20.0% |
| !!! | CATAATGTTTAATTTCGAAT+TGG | + | chr5.3:43216987-43217006 | MS.gene053906:intron | 20.0% |
| !!! | CCTTCAATTTTGATATAAAT+TGG | + | chr5.3:43216842-43216861 | MS.gene053906:intron | 20.0% |
| !!! | CTTTAAGATTATAATAGCAT+AGG | - | chr5.3:43215543-43215562 | None:intergenic | 20.0% |
| !!! | TATTATTTGTGTTGTTTAGT+TGG | - | chr5.3:43218265-43218284 | None:intergenic | 20.0% |
| !!! | TGATATGGATAGTAATTTTT+GGG | + | chr5.3:43215995-43216014 | MS.gene053906:intron | 20.0% |
| !!! | TTGATATGGATAGTAATTTT+TGG | + | chr5.3:43215994-43216013 | MS.gene053906:intron | 20.0% |
| !!! | TTTTACACTTTTTACTTGAA+GGG | + | chr5.3:43214668-43214687 | MS.gene053906:intron | 20.0% |
| !!! | TTTTTTAACACTTGTAATGA+AGG | - | chr5.3:43218416-43218435 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCTTTTTAAGAAG+TGG | - | chr5.3:43215597-43215616 | None:intergenic | 20.0% |
| ! | AAACCAAACTAATTGTCTAA+TGG | + | chr5.3:43217234-43217253 | MS.gene053906:intron | 25.0% |
| ! | AAACCATAAGTATGGTTTAA+TGG | + | chr5.3:43217288-43217307 | MS.gene053906:intron | 25.0% |
| ! | AAACCATTAAACCATACTTA+TGG | - | chr5.3:43217294-43217313 | None:intergenic | 25.0% |
| ! | AAACCATTAGACAATTAGTT+TGG | - | chr5.3:43217240-43217259 | None:intergenic | 25.0% |
| ! | AAAGTGTAAAACAGCTTAAA+TGG | - | chr5.3:43214659-43214678 | None:intergenic | 25.0% |
| ! | AAGTGTAAAACAGCTTAAAT+GGG | - | chr5.3:43214658-43214677 | None:intergenic | 25.0% |
| ! | ACACAAATAATAGACTAAAC+AGG | + | chr5.3:43218273-43218292 | MS.gene053906:intron | 25.0% |
| ! | ATATTAGTAATCCTTATGCA+GGG | - | chr5.3:43216055-43216074 | None:intergenic | 25.0% |
| ! | ATTACAAGTGTTAAAAAACC+TGG | + | chr5.3:43218418-43218437 | MS.gene053906:intron | 25.0% |
| ! | GAGTTCATTTAATCTTTGAA+GGG | - | chr5.3:43218511-43218530 | None:intergenic | 25.0% |
| ! | TAATGATATGATTGGAATCA+TGG | - | chr5.3:43215786-43215805 | None:intergenic | 25.0% |
| ! | TTAAAAAGGCTACTAATTGA+TGG | + | chr5.3:43218603-43218622 | MS.gene053906:intron | 25.0% |
| !! | AGTTCATTTAATCTTTGAAG+GGG | - | chr5.3:43218510-43218529 | None:intergenic | 25.0% |
| !! | ATCAGTAAATAAGTATTGCT+AGG | - | chr5.3:43214252-43214271 | None:intergenic | 25.0% |
| !! | ATGTGATTTACATTTTTCCT+TGG | + | chr5.3:43218650-43218669 | MS.gene053906:intron | 25.0% |
| !! | GGTAGGAGTTAAAATTATTT+TGG | - | chr5.3:43218024-43218043 | None:intergenic | 25.0% |
| !! | TGTATTCTTAGAACTTCTTT+TGG | - | chr5.3:43214104-43214123 | None:intergenic | 25.0% |
| !! | TTTCGAATTGGTTTAATTTC+TGG | + | chr5.3:43216999-43217018 | MS.gene053906:intron | 25.0% |
| !!! | AAAAAAAAGTGTTTGAGTTG+TGG | + | chr5.3:43216596-43216615 | MS.gene053906:intron | 25.0% |
| !!! | AATTTTGTTTTGCCAATTTG+GGG | - | chr5.3:43216119-43216138 | None:intergenic | 25.0% |
| !!! | ACTACAAAACCATTTTTCTA+TGG | + | chr5.3:43217523-43217542 | MS.gene053906:intron | 25.0% |
| !!! | CTACAAAACCATTTTTCTAT+GGG | + | chr5.3:43217524-43217543 | MS.gene053906:intron | 25.0% |
| !!! | GAAATTTTGTTTTGCCAATT+TGG | - | chr5.3:43216121-43216140 | None:intergenic | 25.0% |
| !!! | GTTTTACACTTTTTACTTGA+AGG | + | chr5.3:43214667-43214686 | MS.gene053906:intron | 25.0% |
| !!! | TACAACCTGTAATTTTGTTT+TGG | + | chr5.3:43216810-43216829 | MS.gene053906:intron | 25.0% |
| AAAAGGTTAGGTATAACTTC+AGG | + | chr5.3:43214431-43214450 | MS.gene053906:intron | 30.0% | |
| AAAAGTCTTCAAACATACGT+GGG | - | chr5.3:43218679-43218698 | None:intergenic | 30.0% | |
| AAACCAATATGCTGTGTAAA+TGG | + | chr5.3:43217077-43217096 | MS.gene053906:intron | 30.0% | |
| AAACCATACCCATAGAAAAA+TGG | - | chr5.3:43217535-43217554 | None:intergenic | 30.0% | |
| AAACCATTTACACAGCATAT+TGG | - | chr5.3:43217083-43217102 | None:intergenic | 30.0% | |
| AAACCATTTCCACAACAAAA+TGG | - | chr5.3:43217126-43217145 | None:intergenic | 30.0% | |
| AAACCATTTCTACAGCAAAA+TGG | - | chr5.3:43217578-43217597 | None:intergenic | 30.0% | |
| AACCTCAATCCTTTATCAAA+AGG | + | chr5.3:43218542-43218561 | MS.gene053906:intron | 30.0% | |
| AGATGAGTTTCAACATGAAT+TGG | - | chr5.3:43218363-43218382 | None:intergenic | 30.0% | |
| ATATAAATTGGGAAACCATG+AGG | + | chr5.3:43216854-43216873 | MS.gene053906:intron | 30.0% | |
| CATATTAGTAATCCTTATGC+AGG | - | chr5.3:43216056-43216075 | None:intergenic | 30.0% | |
| GAAATTTCTTCTACTTGTGA+AGG | - | chr5.3:43214050-43214069 | None:intergenic | 30.0% | |
| GATGAGTTTCAACATGAATT+GGG | - | chr5.3:43218362-43218381 | None:intergenic | 30.0% | |
| GGAGTTCATTTAATCTTTGA+AGG | - | chr5.3:43218512-43218531 | None:intergenic | 30.0% | |
| GTTTGTAAGGTTATTCTTGT+AGG | - | chr5.3:43218088-43218107 | None:intergenic | 30.0% | |
| TAAATCACATACACTTGTGT+AGG | - | chr5.3:43218640-43218659 | None:intergenic | 30.0% | |
| TAGAAAATGCTACTAGCAAA+GGG | - | chr5.3:43214212-43214231 | None:intergenic | 30.0% | |
| TATGGTCATATATCAGTTCA+AGG | + | chr5.3:43214533-43214552 | MS.gene053906:intron | 30.0% | |
| TCATACAGCTTCAATTCTAA+AGG | - | chr5.3:43217621-43217640 | None:intergenic | 30.0% | |
| TGTCTATGTCATTGTTAACA+TGG | - | chr5.3:43217757-43217776 | None:intergenic | 30.0% | |
| TGTGTTAGGTTAAGCATAAT+TGG | + | chr5.3:43214937-43214956 | MS.gene053906:intron | 30.0% | |
| TTAGAAAATGCTACTAGCAA+AGG | - | chr5.3:43214213-43214232 | None:intergenic | 30.0% | |
| TTATAGCAAGATATGTGTCT+TGG | - | chr5.3:43214574-43214593 | None:intergenic | 30.0% | |
| ! | AACAAATTTCCGTTTGTTGA+TGG | - | chr5.3:43217691-43217710 | None:intergenic | 30.0% |
| ! | AATCATTTTCAGAGAACTCA+TGG | - | chr5.3:43213957-43213976 | None:intergenic | 30.0% |
| ! | ACAATCACATGCTTTTACAT+AGG | + | chr5.3:43215144-43215163 | MS.gene053906:intron | 30.0% |
| ! | ACAATCACATGCTTTTATAG+AGG | + | chr5.3:43215363-43215382 | MS.gene053906:intron | 30.0% |
| ! | AGAAAAATTGAAGCATTCGA+AGG | + | chr5.3:43216702-43216721 | MS.gene053906:intron | 30.0% |
| ! | ATGATTGTTGATTGTGTTTC+TGG | + | chr5.3:43216651-43216670 | MS.gene053906:intron | 30.0% |
| ! | ATTCTAGGAAACCATAAGTA+TGG | + | chr5.3:43217280-43217299 | MS.gene053906:intron | 30.0% |
| ! | CAATTTTTCTCACGATTGTA+GGG | - | chr5.3:43216692-43216711 | None:intergenic | 30.0% |
| ! | CTACTAATTGATGGTAATTC+TGG | + | chr5.3:43218612-43218631 | MS.gene053906:intron | 30.0% |
| ! | TCAATTTTTCTCACGATTGT+AGG | - | chr5.3:43216693-43216712 | None:intergenic | 30.0% |
| ! | TTATGCATACACTGATTGTA+GGG | - | chr5.3:43216371-43216390 | None:intergenic | 30.0% |
| ! | TTTCTACAGCAAAATGGTTT+TGG | - | chr5.3:43217572-43217591 | None:intergenic | 30.0% |
| !! | AAACCATTTTGCTGTAGAAA+TGG | + | chr5.3:43217572-43217591 | MS.gene053906:intron | 30.0% |
| !! | AAACCATTTTGTTGTGGAAA+TGG | + | chr5.3:43217120-43217139 | MS.gene053906:intron | 30.0% |
| !! | AAACCATTTTTCTATGGGTA+TGG | + | chr5.3:43217529-43217548 | MS.gene053906:intron | 30.0% |
| !! | AGCTTCAATTCTAAAGGTTT+TGG | - | chr5.3:43217615-43217634 | None:intergenic | 30.0% |
| !! | AGTAGCCTTTTTAAAAGATG+CGG | - | chr5.3:43218597-43218616 | None:intergenic | 30.0% |
| !! | ATTGTCTAATGGTTTTGCTA+TGG | + | chr5.3:43217480-43217499 | MS.gene053906:intron | 30.0% |
| !! | GTGATGTAAATTGATTTTCC+AGG | - | chr5.3:43214980-43214999 | None:intergenic | 30.0% |
| !! | TGTATCCGCATCTTTTAAAA+AGG | + | chr5.3:43218589-43218608 | MS.gene053906:intron | 30.0% |
| !! | TTGTCTAATGGTTTTGCTAT+GGG | + | chr5.3:43217481-43217500 | MS.gene053906:intron | 30.0% |
| !!! | AACCTGTAATTTTGTTTTGG+AGG | + | chr5.3:43216813-43216832 | MS.gene053906:intron | 30.0% |
| !!! | ATTTTGTTTTGCCAATTTGG+GGG | - | chr5.3:43216118-43216137 | None:intergenic | 30.0% |
| !!! | CTGATTTTTGACTTAGTCTA+AGG | - | chr5.3:43214352-43214371 | None:intergenic | 30.0% |
| !!! | TTGTGTTGTTTAGTTGGTTT+TGG | - | chr5.3:43218259-43218278 | None:intergenic | 30.0% |
| AAAGAGGTTGACAATTGACA+TGG | + | chr5.3:43215038-43215057 | MS.gene053906:intron | 35.0% | |
| AAAGTCTTCAAACATACGTG+GGG | - | chr5.3:43218678-43218697 | None:intergenic | 35.0% | |
| AAGCTAATACCTCATAGACA+AGG | + | chr5.3:43218047-43218066 | MS.gene053906:intron | 35.0% | |
| AATGCTTCTGTACTTTGTGA+TGG | + | chr5.3:43216566-43216585 | MS.gene053906:intron | 35.0% | |
| AATTGACAAGATCATCCTCA+TGG | - | chr5.3:43216872-43216891 | None:intergenic | 35.0% | |
| ACAATCTGTTTCAGAAAGGT+TGG | - | chr5.3:43218444-43218463 | None:intergenic | 35.0% | |
| ACTCAGGAAACTTGGAAAAA+AGG | + | chr5.3:43214414-43214433 | MS.gene053906:CDS | 35.0% | |
| AGAGACTAGAAGTAACTACT+TGG | - | chr5.3:43214021-43214040 | None:intergenic | 35.0% | |
| AGTAAATCAGCTGGTAAATC+AGG | - | chr5.3:43214698-43214717 | None:intergenic | 35.0% | |
| ATAAAGAGAGAAGAAATGCC+TGG | - | chr5.3:43218720-43218739 | None:intergenic | 35.0% | |
| ATAGACAGCAAAGTTTGTGA+TGG | + | chr5.3:43217770-43217789 | MS.gene053906:intron | 35.0% | |
| ATCTGCTTAATTTCGGGAAA+TGG | + | chr5.3:43216961-43216980 | MS.gene053906:intron | 35.0% | |
| CAAAAATCAGTGAACTCTCT+TGG | + | chr5.3:43214362-43214381 | MS.gene053906:CDS | 35.0% | |
| CAAAAGTCTTCAAACATACG+TGG | - | chr5.3:43218680-43218699 | None:intergenic | 35.0% | |
| CAAAGGAAACCAAACAGAAT+CGG | - | chr5.3:43216434-43216453 | None:intergenic | 35.0% | |
| CAGAATGAACCTGAGAAAAA+GGG | + | chr5.3:43214470-43214489 | MS.gene053906:intron | 35.0% | |
| CATAGGCATTCTTCGATAAT+CGG | - | chr5.3:43215526-43215545 | None:intergenic | 35.0% | |
| CTCAATCCTTTATCAAAAGG+AGG | + | chr5.3:43218545-43218564 | MS.gene053906:intron | 35.0% | |
| CTCTGACATCTGCTTAATTT+CGG | + | chr5.3:43216954-43216973 | MS.gene053906:intron | 35.0% | |
| GAACCTCTGAATTCGAAAAA+CGG | - | chr5.3:43216526-43216545 | None:intergenic | 35.0% | |
| GCAATTTACAGCTTCTACTT+TGG | + | chr5.3:43214506-43214525 | MS.gene053906:intron | 35.0% | |
| GCTATTGAAGAAGAATGCAT+TGG | - | chr5.3:43214131-43214150 | None:intergenic | 35.0% | |
| GCTTACAATCTGTTTCAGAA+AGG | - | chr5.3:43218448-43218467 | None:intergenic | 35.0% | |
| GGAAACTTGGAAAAAAGGTT+AGG | + | chr5.3:43214419-43214438 | MS.gene053906:intron | 35.0% | |
| GGCATTTCTTCTCTCTTTAT+AGG | + | chr5.3:43218720-43218739 | MS.gene053906:intron | 35.0% | |
| GTCTTTAACACAAAGTGATC+TGG | + | chr5.3:43218313-43218332 | MS.gene053906:intron | 35.0% | |
| GTGTCTTGGTATGTCAAATA+AGG | - | chr5.3:43214560-43214579 | None:intergenic | 35.0% | |
| TACACACCATAGATCATCAA+TGG | + | chr5.3:43218118-43218137 | MS.gene053906:intron | 35.0% | |
| TAGACAGCAAAGTTTGTGAT+GGG | + | chr5.3:43217771-43217790 | MS.gene053906:intron | 35.0% | |
| TCTGACATCTGCTTAATTTC+GGG | + | chr5.3:43216955-43216974 | MS.gene053906:intron | 35.0% | |
| TGATTGGAATCATGGTTCTT+TGG | - | chr5.3:43215778-43215797 | None:intergenic | 35.0% | |
| TTCGAATTCAGAGGTTCATA+TGG | + | chr5.3:43216529-43216548 | MS.gene053906:intron | 35.0% | |
| TTTAAGAAGTGGACATTTGC+TGG | - | chr5.3:43215586-43215605 | None:intergenic | 35.0% | |
| ! | ACATATCTTGCTATAACTGG+TGG | + | chr5.3:43214578-43214597 | MS.gene053906:intron | 35.0% |
| ! | AGAAGTCCTCCTTTTGATAA+AGG | - | chr5.3:43218554-43218573 | None:intergenic | 35.0% |
| ! | AGCGCAACAATATTCTGAAA+TGG | - | chr5.3:43217836-43217855 | None:intergenic | 35.0% |
| ! | ATTCTGTTTGGTTTCCTTTG+TGG | + | chr5.3:43216434-43216453 | MS.gene053906:CDS | 35.0% |
| ! | CAACTTATGAGCGAACTTTT+GGG | + | chr5.3:43216327-43216346 | MS.gene053906:intron | 35.0% |
| ! | CTCCTTTTGATAAAGGATTG+AGG | - | chr5.3:43218547-43218566 | None:intergenic | 35.0% |
| ! | CTTATGCATACACTGATTGT+AGG | - | chr5.3:43216372-43216391 | None:intergenic | 35.0% |
| ! | GACACATATCTTGCTATAAC+TGG | + | chr5.3:43214575-43214594 | MS.gene053906:intron | 35.0% |
| ! | GATGATCCATTGATGATCTA+TGG | - | chr5.3:43218127-43218146 | None:intergenic | 35.0% |
| ! | GATTTACCAGCTGATTTACT+TGG | + | chr5.3:43214698-43214717 | MS.gene053906:intron | 35.0% |
| ! | GTGTAGGAAGCAAATTTGTT+GGG | - | chr5.3:43216095-43216114 | None:intergenic | 35.0% |
| ! | TATCTATCACCCTTTTTCTC+AGG | - | chr5.3:43214482-43214501 | None:intergenic | 35.0% |
| ! | TCAACTTATGAGCGAACTTT+TGG | + | chr5.3:43216326-43216345 | MS.gene053906:intron | 35.0% |
| ! | TGATGATGATGATGATCAGT+TGG | - | chr5.3:43214807-43214826 | None:intergenic | 35.0% |
| !! | GGAATCTTTGAAGGTGTTTA+TGG | + | chr5.3:43214605-43214624 | MS.gene053906:intron | 35.0% |
| !! | GTAACAGACATTGGTTTGTA+AGG | - | chr5.3:43218101-43218120 | None:intergenic | 35.0% |
| !! | GTGTTGATGATGAAGAAAGA+CGG | - | chr5.3:43216262-43216281 | None:intergenic | 35.0% |
| !! | GTGTTGATGATGAAGAATGA+CGG | - | chr5.3:43216240-43216259 | None:intergenic | 35.0% |
| !! | TAATGGTTTTGCTATGGGTA+TGG | + | chr5.3:43217486-43217505 | MS.gene053906:intron | 35.0% |
| !! | TCTATGAGGTATTAGCTTTG+TGG | - | chr5.3:43218045-43218064 | None:intergenic | 35.0% |
| !!! | AAGATTCTTGATGCTGCTTT+TGG | - | chr5.3:43214153-43214172 | None:intergenic | 35.0% |
| !!! | ACTCTGAAACCATTTTGTTG+TGG | + | chr5.3:43217114-43217133 | MS.gene053906:intron | 35.0% |
| !!! | ACTTGGTTTTGAGTTTGAAG+AGG | - | chr5.3:43214004-43214023 | None:intergenic | 35.0% |
| !!! | ATGGTTTTAGTTATCACCAG+TGG | + | chr5.3:43217253-43217272 | MS.gene053906:intron | 35.0% |
| !!! | GTAATTTTTGGGTCTGGTTA+TGG | + | chr5.3:43216006-43216025 | MS.gene053906:intron | 35.0% |
| !!! | TGGATAGTAATTTTTGGGTC+TGG | + | chr5.3:43216000-43216019 | MS.gene053906:intron | 35.0% |
| !!! | TGTTTAGTTGGTTTTGGTTG+AGG | - | chr5.3:43218253-43218272 | None:intergenic | 35.0% |
| !!! | TTTTGTTTTGCCAATTTGGG+GGG | - | chr5.3:43216117-43216136 | None:intergenic | 35.0% |
| AAACTCATCTTCACTCTCAG+TGG | + | chr5.3:43218373-43218392 | MS.gene053906:intron | 40.0% | |
| AACAGCTTCAATTCACACGA+CGG | - | chr5.3:43217652-43217671 | None:intergenic | 40.0% | |
| AAGCTTCAACAACACAAGCT+CGG | - | chr5.3:43216470-43216489 | None:intergenic | 40.0% | |
| AATTGGGACACGAAAATGGA+GGG | - | chr5.3:43218346-43218365 | None:intergenic | 40.0% | |
| ATGAATGCTAAAGGTGATGC+TGG | + | chr5.3:43217801-43217820 | MS.gene053906:intron | 40.0% | |
| ATTGGAGAAGCTCAAACGAA+TGG | - | chr5.3:43216926-43216945 | None:intergenic | 40.0% | |
| ATTTCTCAAACTTCCACCAC+CGG | + | chr5.3:43216170-43216189 | MS.gene053906:intron | 40.0% | |
| CAAACTCTACTCAGGAAACT+TGG | + | chr5.3:43214406-43214425 | MS.gene053906:CDS | 40.0% | |
| CAGCTCATTGCTAAACCATT+TGG | + | chr5.3:43217900-43217919 | MS.gene053906:intron | 40.0% | |
| CATCAAGAATCTTCAAAGCC+AGG | + | chr5.3:43214160-43214179 | MS.gene053906:CDS | 40.0% | |
| CATGAATTGGGACACGAAAA+TGG | - | chr5.3:43218350-43218369 | None:intergenic | 40.0% | |
| CCAGAATGAACCTGAGAAAA+AGG | + | chr5.3:43214469-43214488 | MS.gene053906:intron | 40.0% | |
| CGAAATTAAGCAGATGTCAG+AGG | - | chr5.3:43216956-43216975 | None:intergenic | 40.0% | |
| CGAATCGAACCATCAACAAA+CGG | + | chr5.3:43217679-43217698 | MS.gene053906:intron | 40.0% | |
| CTATGGTGTGTAACAGACAT+TGG | - | chr5.3:43218110-43218129 | None:intergenic | 40.0% | |
| CTCTTGATGAGACTACAAAG+AGG | + | chr5.3:43215022-43215041 | MS.gene053906:intron | 40.0% | |
| GATGAAGAATCGTTGGACAA+AGG | - | chr5.3:43218470-43218489 | None:intergenic | 40.0% | |
| GATGTCAGAGGAAAGCTTAT+TGG | - | chr5.3:43216944-43216963 | None:intergenic | 40.0% | |
| GCTTCAACATCAATGATTCC+AGG | + | chr5.3:43218699-43218718 | MS.gene053906:intron | 40.0% | |
| GGAATGGTCATGAATGCTAA+AGG | + | chr5.3:43217792-43217811 | MS.gene053906:intron | 40.0% | |
| GGATTGAGGTTGAAGAAATG+CGG | - | chr5.3:43218533-43218552 | None:intergenic | 40.0% | |
| GGCCTCCAAAACAAAATTAC+AGG | - | chr5.3:43216818-43216837 | None:intergenic | 40.0% | |
| GGTGGAAGTTTGAGAAATGA+CGG | - | chr5.3:43216168-43216187 | None:intergenic | 40.0% | |
| GGTGTAGGAAGCAAATTTGT+TGG | - | chr5.3:43216096-43216115 | None:intergenic | 40.0% | |
| TCTAACTGTAGCAGAGTTGT+TGG | + | chr5.3:43215061-43215080 | MS.gene053906:intron | 40.0% | |
| TGATGGAGATGAAGAATCGT+TGG | - | chr5.3:43218477-43218496 | None:intergenic | 40.0% | |
| TTCACTGTGTTGTGAACGTT+TGG | + | chr5.3:43216622-43216641 | MS.gene053906:intron | 40.0% | |
| TTCAGCAACAAACTCTACTC+AGG | + | chr5.3:43214398-43214417 | MS.gene053906:CDS | 40.0% | |
| TTGAAGCACAAAACAGCTTC+TGG | - | chr5.3:43216402-43216421 | None:intergenic | 40.0% | |
| TTGGAGAAGCTCAAACGAAT+GGG | - | chr5.3:43216925-43216944 | None:intergenic | 40.0% | |
| TTTGAAGAGGAGAGGTAGAA+AGG | - | chr5.3:43213991-43214010 | None:intergenic | 40.0% | |
| TTTGGTTGTAGATGCTTGCT+TGG | - | chr5.3:43214086-43214105 | None:intergenic | 40.0% | |
| ! | AGCAAAGTTTGTGATGGGAA+TGG | + | chr5.3:43217776-43217795 | MS.gene053906:intron | 40.0% |
| ! | AGCTTCTACTTTGGAGACTA+TGG | + | chr5.3:43214515-43214534 | MS.gene053906:intron | 40.0% |
| ! | CCTTTTTCTCAGGTTCATTC+TGG | - | chr5.3:43214472-43214491 | None:intergenic | 40.0% |
| ! | GAAGGGGATGATGATTTTGA+TGG | - | chr5.3:43218494-43218513 | None:intergenic | 40.0% |
| ! | GATTTTCCAGGAAAGAAGAC+AGG | - | chr5.3:43214968-43214987 | None:intergenic | 40.0% |
| ! | GCTCATAAGTTGAAGAACGA+CGG | - | chr5.3:43216319-43216338 | None:intergenic | 40.0% |
| ! | TGACTTAGTCTAAGGTATGC+AGG | - | chr5.3:43214344-43214363 | None:intergenic | 40.0% |
| !! | GAGTAGAGTTTGTTGCTGAA+TGG | - | chr5.3:43214398-43214417 | None:intergenic | 40.0% |
| !! | GATGATCAGTTGGTGAAGTT+GGG | - | chr5.3:43214797-43214816 | None:intergenic | 40.0% |
| !! | GTACCGTTTTTCGAATTCAG+AGG | + | chr5.3:43216520-43216539 | MS.gene053906:CDS | 40.0% |
| !! | TCTTAGATTAGCCTCTGTAG+CGG | + | chr5.3:43215085-43215104 | MS.gene053906:intron | 40.0% |
| !! | TGACGGTGACTTTTGAGAAA+TGG | - | chr5.3:43216151-43216170 | None:intergenic | 40.0% |
| !! | TGAGGTATTAGCTTTGTGGT+AGG | - | chr5.3:43218041-43218060 | None:intergenic | 40.0% |
| !! | TGATGATCAGTTGGTGAAGT+TGG | - | chr5.3:43214798-43214817 | None:intergenic | 40.0% |
| !! | TTCAGAGCGTTGATTTGCTT+TGG | + | chr5.3:43217144-43217163 | MS.gene053906:intron | 40.0% |
| !! | TTGACTTGGCTGAAACCAAA+TGG | - | chr5.3:43217918-43217937 | None:intergenic | 40.0% |
| !!! | GTTTTGAGTTTGAAGAGGAG+AGG | - | chr5.3:43213999-43214018 | None:intergenic | 40.0% |
| ACATGTGGTGAAGGATCAAC+AGG | - | chr5.3:43214728-43214747 | None:intergenic | 45.0% | |
| AGGAGAGGTAGAAAGGTTGA+GGG | - | chr5.3:43213984-43214003 | None:intergenic | 45.0% | |
| ATCCTTATGCAGGGTGCATA+AGG | - | chr5.3:43216046-43216065 | None:intergenic | 45.0% | |
| ATCTTCACTCTCAGTGGCAT+AGG | + | chr5.3:43218379-43218398 | MS.gene053906:intron | 45.0% | |
| CACTGGAATCCGATTCTGTT+TGG | + | chr5.3:43216422-43216441 | MS.gene053906:CDS | 45.0% | |
| GAATTGGGACACGAAAATGG+AGG | - | chr5.3:43218347-43218366 | None:intergenic | 45.0% | |
| GACTTACCTGTCTTCTTTCC+TGG | + | chr5.3:43214959-43214978 | MS.gene053906:intron | 45.0% | |
| GAGATCAATGAACGTGACAG+AGG | + | chr5.3:43214314-43214333 | MS.gene053906:CDS | 45.0% | |
| GATGGTTCAACATGTGGTGA+AGG | - | chr5.3:43214737-43214756 | None:intergenic | 45.0% | |
| GGCTTTCCAAGTAAATCAGC+TGG | - | chr5.3:43214707-43214726 | None:intergenic | 45.0% | |
| GTGTTGTGAACGTTTGGATG+AGG | + | chr5.3:43216628-43216647 | MS.gene053906:intron | 45.0% | |
| TTCCTTATGCACCCTGCATA+AGG | + | chr5.3:43216041-43216060 | MS.gene053906:intron | 45.0% | |
| TTGTTGAAGCTTGGCGATGT+TGG | + | chr5.3:43216478-43216497 | MS.gene053906:CDS | 45.0% | |
| ! | AAGTTGGGTAAAGAGGCATG+AGG | - | chr5.3:43214782-43214801 | None:intergenic | 45.0% |
| ! | ACACAAAGTGATCTGGTTCC+AGG | + | chr5.3:43218320-43218339 | MS.gene053906:intron | 45.0% |
| ! | AGTGGACATTTGCTGGACTA+TGG | - | chr5.3:43215579-43215598 | None:intergenic | 45.0% |
| ! | CTGAGAAGCATGTACAAACC+TGG | - | chr5.3:43214181-43214200 | None:intergenic | 45.0% |
| ! | CTTGCTATAACTGGTGGTTC+TGG | + | chr5.3:43214584-43214603 | MS.gene053906:intron | 45.0% |
| ! | GAAGCATTCGAAGGCTATTG+AGG | + | chr5.3:43216711-43216730 | MS.gene053906:intron | 45.0% |
| ! | GAGCTTGTGTTGTTGAAGCT+TGG | + | chr5.3:43216469-43216488 | MS.gene053906:CDS | 45.0% |
| ! | GCATACACTGATTGTAGGGA+AGG | - | chr5.3:43216367-43216386 | None:intergenic | 45.0% |
| ! | GGTTGTTTCCGATGTGATTC+CGG | - | chr5.3:43216192-43216211 | None:intergenic | 45.0% |
| ! | GTTGGTGAAGTTGGGTAAAG+AGG | - | chr5.3:43214789-43214808 | None:intergenic | 45.0% |
| ! | TCGGACTGTTTTCACCACAA+AGG | - | chr5.3:43216451-43216470 | None:intergenic | 45.0% |
| !! | GCTGTTTTGTGCTTCAACAC+TGG | + | chr5.3:43216405-43216424 | MS.gene053906:CDS | 45.0% |
| !! | GGTGGTTCTGGAATCTTTGA+AGG | + | chr5.3:43214596-43214615 | MS.gene053906:intron | 45.0% |
| AAGTTGAAGAACGACGGCGT+TGG | - | chr5.3:43216313-43216332 | None:intergenic | 50.0% | |
| ATCACCAGTGGCTCGATTCT+AGG | + | chr5.3:43217265-43217284 | MS.gene053906:intron | 50.0% | |
| CGTGAGAGACCTTGTCTATG+AGG | - | chr5.3:43218059-43218078 | None:intergenic | 50.0% | |
| GAGGAGAGGTAGAAAGGTTG+AGG | - | chr5.3:43213985-43214004 | None:intergenic | 50.0% | |
| GCAGGAGATGGTTCAACATG+TGG | - | chr5.3:43214743-43214762 | None:intergenic | 50.0% | |
| GCTAAAGGTGATGCTGGACT+TGG | + | chr5.3:43217807-43217826 | MS.gene053906:intron | 50.0% | |
| GGGTCTGGTTATGGTGCATA+AGG | + | chr5.3:43216015-43216034 | MS.gene053906:intron | 50.0% | |
| GTTTCCTAGAATCGAGCCAC+TGG | - | chr5.3:43217272-43217291 | None:intergenic | 50.0% | |
| TGAACCATCTCCTGCTGCTA+AGG | + | chr5.3:43214748-43214767 | MS.gene053906:intron | 50.0% | |
| TGTTTCCGATGTGATTCCGG+TGG | - | chr5.3:43216189-43216208 | None:intergenic | 50.0% | |
| TTCCACCACCGGAATCACAT+CGG | + | chr5.3:43216181-43216200 | MS.gene053906:intron | 50.0% | |
| TTTCCGGTGGTGAAGAAGGA+CGG | - | chr5.3:43216284-43216303 | None:intergenic | 50.0% | |
| ! | ACGGCGTTGGAAGTTGTTTC+CGG | - | chr5.3:43216300-43216319 | None:intergenic | 50.0% |
| ! | CTGTTTCAGAAAGGTTGGCC+AGG | - | chr5.3:43218439-43218458 | None:intergenic | 50.0% |
| ! | GTTGTTTCCGGTGGTGAAGA+AGG | - | chr5.3:43216288-43216307 | None:intergenic | 50.0% |
| ! | TTTGCCAATTTGGGGGGTGT+AGG | - | chr5.3:43216111-43216130 | None:intergenic | 50.0% |
| !! | GACGGCGATTCTGTTGTTTC+CGG | - | chr5.3:43216222-43216241 | None:intergenic | 50.0% |
| !! | GATTCTGTTGTTTCCGGTGG+TGG | - | chr5.3:43216216-43216235 | None:intergenic | 50.0% |
| ACACCGTCCTTCTTCACCAC+CGG | + | chr5.3:43216278-43216297 | MS.gene053906:intron | 55.0% | |
| CGAATGGGTGCAGATGTCAG+AGG | - | chr5.3:43216910-43216929 | None:intergenic | 55.0% | |
| GCTTCCTACACCCCCCAAAT+TGG | + | chr5.3:43216104-43216123 | MS.gene053906:intron | 55.0% | |
| TCGGAAACAACCTCCACCAC+CGG | + | chr5.3:43216200-43216219 | MS.gene053906:intron | 55.0% | |
| TTCCGATGTGATTCCGGTGG+TGG | - | chr5.3:43216186-43216205 | None:intergenic | 55.0% | |
| ! | CAAACATACGTGGGGTGCCA+AGG | - | chr5.3:43218670-43218689 | None:intergenic | 55.0% |
| ! | GCGTTGGAAGTTGTTTCCGG+TGG | - | chr5.3:43216297-43216316 | None:intergenic | 55.0% |
| ! | GTAGCCTTAGCAGCAGGAGA+TGG | - | chr5.3:43214755-43214774 | None:intergenic | 55.0% |
| !! | GGCGATTCTGTTGTTTCCGG+TGG | - | chr5.3:43216219-43216238 | None:intergenic | 55.0% |
| !! | TCTGTTGTTTCCGGTGGTGG+AGG | - | chr5.3:43216213-43216232 | None:intergenic | 55.0% |
| CAACACTGCAGCCGCTACAG+AGG | - | chr5.3:43215099-43215118 | None:intergenic | 60.0% | |
| GGACACGAAAATGGAGGGCC+TGG | - | chr5.3:43218341-43218360 | None:intergenic | 60.0% | |
| ! | GGCTCAGTAGCCTTAGCAGC+AGG | - | chr5.3:43214761-43214780 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 43213947 | 43218766 | 43213947 | ID=MS.gene053906 |
| chr5.3 | mRNA | 43213947 | 43218766 | 43213947 | ID=MS.gene053906.t1;Parent=MS.gene053906 |
| chr5.3 | exon | 43213947 | 43214181 | 43213947 | ID=MS.gene053906.t1.exon1;Parent=MS.gene053906.t1 |
| chr5.3 | CDS | 43213947 | 43214181 | 43213947 | ID=cds.MS.gene053906.t1;Parent=MS.gene053906.t1 |
| chr5.3 | exon | 43214288 | 43214435 | 43214288 | ID=MS.gene053906.t1.exon2;Parent=MS.gene053906.t1 |
| chr5.3 | CDS | 43214288 | 43214435 | 43214288 | ID=cds.MS.gene053906.t1;Parent=MS.gene053906.t1 |
| chr5.3 | exon | 43216380 | 43216541 | 43216380 | ID=MS.gene053906.t1.exon3;Parent=MS.gene053906.t1 |
| chr5.3 | CDS | 43216380 | 43216541 | 43216380 | ID=cds.MS.gene053906.t1;Parent=MS.gene053906.t1 |
| chr5.3 | exon | 43218742 | 43218766 | 43218742 | ID=MS.gene053906.t1.exon4;Parent=MS.gene053906.t1 |
| chr5.3 | CDS | 43218742 | 43218766 | 43218742 | ID=cds.MS.gene053906.t1;Parent=MS.gene053906.t1 |
| Gene Sequence |
| Protein sequence |
