Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31648.t1 | XP_003588491.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 4.80E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31648.t1 | Q9LBG2 | 28.8 | 271 | 165 | 9 | 2 | 255 | 5 | 264 | 3.0e-17 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31648.t1 | G7I3F7 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 3.4e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31648 | 0.843767 | 1.14E-58 | -1.69E-46 |
| MS.gene04918 | MS.gene31648 | 0.811957 | 5.40E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene31648 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene31648 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene31648 | 0.818929 | 1.52E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene31648 | 0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene31648 | 0.817062 | 4.01E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene31648 | 0.836305 | 1.01E-56 | -1.69E-46 |
| MS.gene050359 | MS.gene31648 | 0.8191 | 1.39E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene31648 | 0.82706 | 1.93E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene31648 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene050657 | MS.gene31648 | 0.809385 | 1.94E-50 | -1.69E-46 |
| MS.gene050737 | MS.gene31648 | 0.80154 | 8.58E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene31648 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene31648 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene31648 | 0.808618 | 2.83E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene31648 | 0.812223 | 4.72E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene31648 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene31648 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene31648 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene051490 | MS.gene31648 | 0.842146 | 3.09E-58 | -1.69E-46 |
| MS.gene051744 | MS.gene31648 | 0.832181 | 1.09E-55 | -1.69E-46 |
| MS.gene051832 | MS.gene31648 | 0.808616 | 2.84E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene31648 | 0.839768 | 1.30E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene31648 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene31648 | 0.843219 | 1.60E-58 | -1.69E-46 |
| MS.gene052307 | MS.gene31648 | 0.833925 | 4.03E-56 | -1.69E-46 |
| MS.gene052335 | MS.gene31648 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene31648 | 0.816102 | 6.57E-52 | -1.69E-46 |
| MS.gene052459 | MS.gene31648 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene31648 | 0.854859 | 9.30E-62 | -1.69E-46 |
| MS.gene052493 | MS.gene31648 | 0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene31648 | 0.826592 | 2.49E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene31648 | 0.830591 | 2.69E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene31648 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene31648 | 0.814139 | 1.79E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene31648 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene31648 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene31648 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene053906 | MS.gene31648 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene31648 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene31648 | 0.825567 | 4.37E-54 | -1.69E-46 |
| MS.gene05439 | MS.gene31648 | 0.806119 | 9.60E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene31648 | 0.854834 | 9.45E-62 | -1.69E-46 |
| MS.gene05458 | MS.gene31648 | 0.811907 | 5.54E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene31648 | 0.802406 | 5.70E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene31648 | 0.847124 | 1.41E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene31648 | 0.846883 | 1.64E-59 | -1.69E-46 |
| MS.gene055141 | MS.gene31648 | 0.801661 | 8.10E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene31648 | 0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene31648 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene31648 | 0.810267 | 1.25E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene31648 | 0.829962 | 3.84E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene31648 | 0.838596 | 2.62E-57 | -1.69E-46 |
| MS.gene05552 | MS.gene31648 | 0.806133 | 9.54E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene31648 | 0.813841 | 2.09E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene31648 | 0.808712 | 2.71E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene31648 | 0.805668 | 1.19E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene31648 | 0.809635 | 1.72E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene31648 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene056638 | MS.gene31648 | 0.801482 | 8.82E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene31648 | 0.825362 | 4.89E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene31648 | 0.822177 | 2.72E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene31648 | 0.824639 | 7.24E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene31648 | 0.820051 | 8.41E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene31648 | 0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene31648 | 0.835431 | 1.68E-56 | -1.69E-46 |
| MS.gene057890 | MS.gene31648 | -0.831339 | 1.77E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene31648 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene057919 | MS.gene31648 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene31648 | 0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene31648 | 0.812647 | 3.82E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene31648 | 0.807749 | 4.34E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene31648 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene31648 | 0.800051 | 1.73E-48 | -1.69E-46 |
| MS.gene058429 | MS.gene31648 | 0.829064 | 6.34E-55 | -1.69E-46 |
| MS.gene058758 | MS.gene31648 | 0.816762 | 4.68E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene31648 | 0.990251 | 9.37E-182 | -1.69E-46 |
| MS.gene05952 | MS.gene31648 | 0.800432 | 1.44E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene31648 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene059774 | MS.gene31648 | 0.837392 | 5.34E-57 | -1.69E-46 |
| MS.gene059965 | MS.gene31648 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene31648 | 0.830457 | 2.91E-55 | -1.69E-46 |
| MS.gene060373 | MS.gene31648 | 0.823168 | 1.60E-53 | -1.69E-46 |
| MS.gene060520 | MS.gene31648 | 0.834156 | 3.53E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene31648 | 0.809853 | 1.54E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene31648 | 0.835705 | 1.44E-56 | -1.69E-46 |
| MS.gene060840 | MS.gene31648 | 0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene31648 | 0.840138 | 1.04E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene31648 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene31648 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene31648 | 0.818523 | 1.88E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene31648 | 0.815576 | 8.61E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene31648 | 0.85438 | 1.28E-61 | -1.69E-46 |
| MS.gene061188 | MS.gene31648 | 0.803876 | 2.83E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31648.t1 | MTR_1g007800 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 536 |
| MS.gene31648.t1 | MTR_4g058840 | 32.540 | 252 | 168 | 2 | 6 | 256 | 14 | 264 | 4.27e-36 | 129 |
| MS.gene31648.t1 | MTR_4g058820 | 32.540 | 252 | 168 | 2 | 6 | 256 | 14 | 264 | 4.27e-36 | 129 |
| MS.gene31648.t1 | MTR_4g058810 | 32.143 | 252 | 169 | 2 | 6 | 256 | 14 | 264 | 4.91e-36 | 129 |
| MS.gene31648.t1 | MTR_1g051165 | 30.556 | 252 | 168 | 3 | 6 | 251 | 17 | 267 | 7.29e-32 | 119 |
| MS.gene31648.t1 | MTR_4g058830 | 35.294 | 170 | 110 | 0 | 87 | 256 | 41 | 210 | 5.50e-29 | 109 |
| MS.gene31648.t1 | MTR_8g442750 | 27.820 | 266 | 170 | 9 | 6 | 260 | 17 | 271 | 1.13e-13 | 69.7 |
| MS.gene31648.t1 | MTR_4g052350 | 26.538 | 260 | 165 | 8 | 6 | 256 | 17 | 259 | 3.54e-13 | 68.2 |
| MS.gene31648.t1 | MTR_6g035395 | 29.050 | 179 | 119 | 4 | 84 | 258 | 68 | 242 | 1.10e-12 | 66.2 |
| MS.gene31648.t1 | MTR_4g052340 | 25.373 | 268 | 174 | 8 | 6 | 264 | 17 | 267 | 1.17e-12 | 66.6 |
| MS.gene31648.t1 | MTR_4g052300 | 25.769 | 260 | 167 | 8 | 6 | 256 | 11 | 253 | 4.74e-11 | 62.0 |
| MS.gene31648.t1 | MTR_7g105460 | 22.932 | 266 | 186 | 7 | 6 | 264 | 16 | 269 | 5.89e-11 | 61.6 |
| MS.gene31648.t1 | MTR_4g132850 | 27.386 | 241 | 157 | 7 | 18 | 252 | 18 | 246 | 5.89e-11 | 61.6 |
| MS.gene31648.t1 | MTR_7g094520 | 24.706 | 255 | 167 | 7 | 9 | 252 | 17 | 257 | 6.47e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31648.t1 | AT3G01980 | 59.774 | 266 | 106 | 1 | 1 | 265 | 1 | 266 | 4.04e-119 | 341 |
| MS.gene31648.t1 | AT3G01980 | 59.774 | 266 | 106 | 1 | 1 | 265 | 1 | 266 | 4.04e-119 | 341 |
| MS.gene31648.t1 | AT3G01980 | 53.716 | 296 | 106 | 2 | 1 | 265 | 1 | 296 | 6.74e-112 | 324 |
| MS.gene31648.t1 | AT3G01980 | 58.650 | 237 | 97 | 1 | 30 | 265 | 6 | 242 | 1.18e-101 | 296 |
| MS.gene31648.t1 | AT3G01980 | 54.598 | 174 | 78 | 1 | 1 | 173 | 1 | 174 | 5.17e-66 | 203 |
| MS.gene31648.t1 | AT3G01980 | 46.569 | 204 | 78 | 2 | 1 | 173 | 1 | 204 | 5.29e-59 | 187 |
| MS.gene31648.t1 | AT2G17845 | 33.594 | 256 | 163 | 6 | 6 | 256 | 50 | 303 | 6.94e-38 | 135 |
| MS.gene31648.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 22 | 273 | 8.87e-38 | 134 |
| MS.gene31648.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 18 | 269 | 9.07e-38 | 134 |
| MS.gene31648.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 20 | 271 | 1.05e-37 | 134 |
| MS.gene31648.t1 | AT1G63380 | 33.202 | 253 | 166 | 3 | 6 | 256 | 25 | 276 | 1.18e-37 | 134 |
| MS.gene31648.t1 | AT3G55290 | 33.992 | 253 | 163 | 4 | 6 | 256 | 20 | 270 | 1.24e-37 | 134 |
| MS.gene31648.t1 | AT3G55290 | 33.992 | 253 | 163 | 4 | 6 | 256 | 21 | 271 | 1.25e-37 | 134 |
| MS.gene31648.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 18 | 269 | 1.04e-36 | 131 |
| MS.gene31648.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 16 | 267 | 1.10e-36 | 131 |
| MS.gene31648.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 17 | 268 | 1.18e-36 | 131 |
| MS.gene31648.t1 | AT1G62610 | 32.411 | 253 | 168 | 3 | 6 | 256 | 22 | 273 | 1.45e-36 | 131 |
| MS.gene31648.t1 | AT3G55310 | 32.016 | 253 | 168 | 4 | 6 | 256 | 20 | 270 | 1.85e-34 | 125 |
| MS.gene31648.t1 | AT3G46170 | 30.830 | 253 | 171 | 4 | 6 | 256 | 29 | 279 | 2.40e-33 | 123 |
| MS.gene31648.t1 | AT2G29150 | 29.480 | 173 | 116 | 4 | 84 | 256 | 95 | 261 | 1.89e-13 | 68.9 |
| MS.gene31648.t1 | AT2G47140 | 25.954 | 262 | 173 | 7 | 6 | 259 | 9 | 257 | 6.07e-12 | 64.3 |
Find 63 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAAGCTTGTAAAATTT+TGG | 0.076813 | 1.1:+11767364 | MS.gene31648:CDS |
| CTTTCCCTTCCCACCGATAA+TGG | 0.206019 | 1.1:-11770767 | None:intergenic |
| TGTATTTATAACGTCGATAA+TGG | 0.234136 | 1.1:+11768785 | MS.gene31648:CDS |
| GGAAGTGGTTGAATTGGATA+TGG | 0.334118 | 1.1:+11767307 | MS.gene31648:CDS |
| TTCACACCTGCATCCTTGTT+TGG | 0.341452 | 1.1:-11767122 | None:intergenic |
| AAGGGAAAGGGCAGAGAAGT+TGG | 0.349755 | 1.1:+11770781 | MS.gene31648:CDS |
| CTGTGCTCCATCAACATATA+TGG | 0.350340 | 1.1:-11770909 | None:intergenic |
| CTGGAGTTCAGCAGTTAGTT+CGG | 0.353967 | 1.1:+11768859 | MS.gene31648:CDS |
| CTGTTAACTCAAGATGATCT+TGG | 0.368618 | 1.1:-11768659 | None:intergenic |
| AGAAATATCGTCGCCATTAG+AGG | 0.371340 | 1.1:-11767077 | None:intergenic |
| TGTTGAAGTTCCGCATCCTT+TGG | 0.387285 | 1.1:-11768749 | None:intergenic |
| TTTCCCTTCCCACCGATAAT+GGG | 0.391273 | 1.1:-11770766 | None:intergenic |
| TGTTGTGGAAGTGGTTGAAT+TGG | 0.391516 | 1.1:+11767301 | MS.gene31648:CDS |
| GTATTTATAACGTCGATAAT+GGG | 0.394081 | 1.1:+11768786 | MS.gene31648:CDS |
| GCATATGCCTCAGCCTTGGC+TGG | 0.394449 | 1.1:+11768840 | MS.gene31648:CDS |
| TGCTGCATATGCCTCAGCCT+TGG | 0.396535 | 1.1:+11768836 | MS.gene31648:CDS |
| GTGAGTAATACTCTCTTTGT+TGG | 0.410502 | 1.1:-11767055 | None:intergenic |
| GTTAATTGTTATTCTTATGA+AGG | 0.411867 | 1.1:+11767404 | MS.gene31648:CDS |
| AGAGTATTACTCACCTCTAA+TGG | 0.413408 | 1.1:+11767064 | MS.gene31648:CDS |
| GAGGCATATGCAGCAGCTCC+TGG | 0.414436 | 1.1:-11768828 | None:intergenic |
| TGGAGTTCAGCAGTTAGTTC+GGG | 0.420239 | 1.1:+11768860 | MS.gene31648:CDS |
| CAGGCATCGGCTATGGAGAT+AGG | 0.432742 | 1.1:+11770686 | MS.gene31648:intron |
| ATAATGGGAATTCATCTTCC+AGG | 0.433329 | 1.1:-11770751 | None:intergenic |
| TACTGATTCTGTTGTGGAAG+TGG | 0.440619 | 1.1:+11767292 | MS.gene31648:CDS |
| GGAAGATGAATTCCCATTAT+CGG | 0.455189 | 1.1:+11770754 | MS.gene31648:CDS |
| GGCAGAGAAGTTGGTGAAAG+AGG | 0.458842 | 1.1:+11770790 | MS.gene31648:CDS |
| CAATAGCATTAACTCTGATC+TGG | 0.461612 | 1.1:-11770715 | None:intergenic |
| CACATAAAGGAACGCATCCT+AGG | 0.467073 | 1.1:-11770944 | None:intergenic |
| TCAGAAAGAGGGCTTTATCC+AGG | 0.475145 | 1.1:+11768810 | MS.gene31648:CDS |
| GTGGAAGAACAATCACATAA+AGG | 0.476583 | 1.1:-11770957 | None:intergenic |
| GGAACAACCATATATGTTGA+TGG | 0.493494 | 1.1:+11770902 | MS.gene31648:CDS |
| GTCATCTATCTAATCAGTGA+TGG | 0.511788 | 1.1:+11770863 | MS.gene31648:CDS |
| ATTATCGGTGGGAAGGGAAA+GGG | 0.515455 | 1.1:+11770769 | MS.gene31648:CDS |
| CATTATCGGTGGGAAGGGAA+AGG | 0.521918 | 1.1:+11770768 | MS.gene31648:CDS |
| TCGATAATGGGTTCAGAAAG+AGG | 0.524746 | 1.1:+11768798 | MS.gene31648:CDS |
| ATTTAGCCAAACAAGGATGC+AGG | 0.531939 | 1.1:+11767116 | MS.gene31648:CDS |
| AGGCTGTTGGCCAAAGGATG+CGG | 0.532056 | 1.1:+11768739 | MS.gene31648:CDS |
| TTCAGTTACTGATTCTGTTG+TGG | 0.546092 | 1.1:+11767286 | MS.gene31648:CDS |
| AAAGGAACGCATCCTAGGCC+TGG | 0.552291 | 1.1:-11770939 | None:intergenic |
| CTGAACTCCAGCCAAGGCTG+AGG | 0.556384 | 1.1:-11768847 | None:intergenic |
| TATTAAAGGCTGTTGGCCAA+AGG | 0.558624 | 1.1:+11768733 | MS.gene31648:CDS |
| GATGGGTCATGCTACATGAC+AGG | 0.564383 | 1.1:+11770881 | MS.gene31648:CDS |
| AATTCCCATTATCGGTGGGA+AGG | 0.575283 | 1.1:+11770762 | MS.gene31648:CDS |
| ATTCCCATTATCGGTGGGAA+GGG | 0.578456 | 1.1:+11770763 | MS.gene31648:CDS |
| AGAGTTAATGCTATTGCAAG+AGG | 0.584311 | 1.1:+11770722 | MS.gene31648:CDS |
| AGGCAGCACCACTTGAGAGA+TGG | 0.586030 | 1.1:+11770810 | MS.gene31648:CDS |
| CACAGTCTATAACCAGGCCT+AGG | 0.587077 | 1.1:+11770927 | MS.gene31648:CDS |
| CGATAATGGGTTCAGAAAGA+GGG | 0.588137 | 1.1:+11768799 | MS.gene31648:CDS |
| GGAATTCATCTTCCAGGTGA+AGG | 0.588874 | 1.1:-11770745 | None:intergenic |
| TCATCTATCTAATCAGTGAT+GGG | 0.590549 | 1.1:+11770864 | MS.gene31648:CDS |
| TATTGCAAGAGGCCTTCACC+TGG | 0.592366 | 1.1:+11770733 | MS.gene31648:CDS |
| TGCGGAACTTCAACAAGGGT+GGG | 0.594166 | 1.1:+11768757 | MS.gene31648:CDS |
| TATCGACGTTATAAATACAA+TGG | 0.599236 | 1.1:-11768781 | None:intergenic |
| ACATCAAGCCATCTCTCAAG+TGG | 0.599720 | 1.1:-11770818 | None:intergenic |
| GCTTTCAATTTAGCCAAACA+AGG | 0.601130 | 1.1:+11767109 | MS.gene31648:CDS |
| ATGCGGAACTTCAACAAGGG+TGG | 0.606430 | 1.1:+11768756 | MS.gene31648:CDS |
| AGATGAATTCCCATTATCGG+TGG | 0.607123 | 1.1:+11770757 | MS.gene31648:CDS |
| AATGGCGACGATATTTCTCA+TGG | 0.613815 | 1.1:+11767082 | MS.gene31648:CDS |
| AGGATGCGGAACTTCAACAA+GGG | 0.642788 | 1.1:+11768753 | MS.gene31648:CDS |
| GATGAATTCCCATTATCGGT+GGG | 0.643626 | 1.1:+11770758 | MS.gene31648:CDS |
| AAGGATGCGGAACTTCAACA+AGG | 0.644362 | 1.1:+11768752 | MS.gene31648:CDS |
| ATGGAGCACAGTCTATAACC+AGG | 0.654617 | 1.1:+11770921 | MS.gene31648:CDS |
| TAACTGCTGAACTCCAGCCA+AGG | 0.675105 | 1.1:-11768853 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAATCAAATAAAATAA+TGG | - | chr1.1:11767441-11767460 | None:intergenic | 10.0% |
| !! | TGAAATAATAAATCTTTAAA+AGG | + | chr1.1:11769707-11769726 | MS.gene31648:intron | 10.0% |
| !! | TTAAAATAATAATTATGAGA+AGG | + | chr1.1:11769591-11769610 | MS.gene31648:intron | 10.0% |
| !!! | AAATTTTTTGTGTATTTTTA+GGG | + | chr1.1:11767208-11767227 | MS.gene31648:intron | 10.0% |
| !!! | GAAATAATAAATCTTTAAAA+GGG | + | chr1.1:11769708-11769727 | MS.gene31648:intron | 10.0% |
| !!! | TAAATTTTTTGTGTATTTTT+AGG | + | chr1.1:11767207-11767226 | MS.gene31648:intron | 10.0% |
| !!! | TCTCATAATTATTATTTTAA+CGG | - | chr1.1:11769591-11769610 | None:intergenic | 10.0% |
| !! | AAATCGAAAAAAAAAAATGA+AGG | - | chr1.1:11767167-11767186 | None:intergenic | 15.0% |
| !! | TAGCTTAATTAAGTATAAAT+TGG | + | chr1.1:11770520-11770539 | MS.gene31648:intron | 15.0% |
| !!! | AATAGTGAAGATAAATTTTA+TGG | + | chr1.1:11768698-11768717 | MS.gene31648:CDS | 15.0% |
| !! | AATTAAGCTGTTTATTCAAA+TGG | + | chr1.1:11767912-11767931 | MS.gene31648:intron | 20.0% |
| !! | AATTTCTTACTAATGAGATA+GGG | + | chr1.1:11770176-11770195 | MS.gene31648:intron | 20.0% |
| !! | ATATTTATCACAAACTTGAT+AGG | - | chr1.1:11768026-11768045 | None:intergenic | 20.0% |
| !! | ATTAAGCTGTTTATTCAAAT+GGG | + | chr1.1:11767913-11767932 | MS.gene31648:intron | 20.0% |
| !! | CAAATTAATCTATTCAAACA+GGG | + | chr1.1:11767613-11767632 | MS.gene31648:intron | 20.0% |
| !! | GAAAAAGCTTATAGTTTATA+GGG | + | chr1.1:11767506-11767525 | MS.gene31648:intron | 20.0% |
| !! | TAATTTCTTACTAATGAGAT+AGG | + | chr1.1:11770175-11770194 | MS.gene31648:intron | 20.0% |
| !! | TCATTTATTTGAAAATCAGA+TGG | + | chr1.1:11768962-11768981 | MS.gene31648:intron | 20.0% |
| !! | TGAAAAAGCTTATAGTTTAT+AGG | + | chr1.1:11767505-11767524 | MS.gene31648:intron | 20.0% |
| !! | TTTATCTTGTGTAATAGAAA+TGG | + | chr1.1:11767842-11767861 | MS.gene31648:intron | 20.0% |
| !!! | AACTTTTATAGCAGATAATA+AGG | - | chr1.1:11770644-11770663 | None:intergenic | 20.0% |
| !!! | ATAAAGCTTGTAAAATTTTG+GGG | + | chr1.1:11767366-11767385 | MS.gene31648:CDS | 20.0% |
| !!! | CTTATTTAGAGTTTCTTTTT+TGG | - | chr1.1:11769028-11769047 | None:intergenic | 20.0% |
| !!! | GATAAAGCTTGTAAAATTTT+GGG | + | chr1.1:11767365-11767384 | MS.gene31648:CDS | 20.0% |
| !!! | GGCATGATATAATTTTTTAT+GGG | + | chr1.1:11770350-11770369 | MS.gene31648:intron | 20.0% |
| !!! | GTTAATTGTTATTCTTATGA+AGG | + | chr1.1:11767404-11767423 | MS.gene31648:CDS | 20.0% |
| !!! | TGATAAAGCTTGTAAAATTT+TGG | + | chr1.1:11767364-11767383 | MS.gene31648:CDS | 20.0% |
| !!! | TGGCATGATATAATTTTTTA+TGG | + | chr1.1:11770349-11770368 | MS.gene31648:intron | 20.0% |
| !!! | TTTTACTTGCTTTTCATATT+TGG | + | chr1.1:11770565-11770584 | MS.gene31648:intron | 20.0% |
| ! | ACAAGAAAATAGTCTCTAAA+TGG | - | chr1.1:11768537-11768556 | None:intergenic | 25.0% |
| ! | ACTCCAATGATGATAATTAA+CGG | - | chr1.1:11769996-11770015 | None:intergenic | 25.0% |
| ! | ATCAAAGATTGTTTCAGTTA+GGG | - | chr1.1:11768312-11768331 | None:intergenic | 25.0% |
| ! | ATTATCTGCTATAAAAGTTG+AGG | + | chr1.1:11770645-11770664 | MS.gene31648:intron | 25.0% |
| ! | GACTTATTCATGAGTTTATA+TGG | + | chr1.1:11767568-11767587 | MS.gene31648:intron | 25.0% |
| ! | GATTGATAAAAGTAAAGAAC+AGG | - | chr1.1:11768998-11769017 | None:intergenic | 25.0% |
| ! | GCAAATTAATCTATTCAAAC+AGG | + | chr1.1:11767612-11767631 | MS.gene31648:intron | 25.0% |
| ! | GTATTTATAACGTCGATAAT+GGG | + | chr1.1:11768786-11768805 | MS.gene31648:CDS | 25.0% |
| ! | GTTTAAAAACACCTAAACTT+AGG | - | chr1.1:11767639-11767658 | None:intergenic | 25.0% |
| ! | TAATTGGGTTAAATCAATGT+GGG | - | chr1.1:11769344-11769363 | None:intergenic | 25.0% |
| ! | TATCGACGTTATAAATACAA+TGG | - | chr1.1:11768784-11768803 | None:intergenic | 25.0% |
| ! | TCAAAATCAAGGAAGTAATA+AGG | - | chr1.1:11770097-11770116 | None:intergenic | 25.0% |
| ! | TCCTCTATTAAAGAATTCTT+CGG | - | chr1.1:11769211-11769230 | None:intergenic | 25.0% |
| ! | TGTAACAAAGGTTTAATGTT+AGG | + | chr1.1:11770024-11770043 | MS.gene31648:intron | 25.0% |
| ! | TGTATTTATAACGTCGATAA+TGG | + | chr1.1:11768785-11768804 | MS.gene31648:CDS | 25.0% |
| ! | TTAAGCTGTTTATTCAAATG+GGG | + | chr1.1:11767914-11767933 | MS.gene31648:intron | 25.0% |
| ! | TTTGGAAATATTAGAAAGTC+TGG | + | chr1.1:11770583-11770602 | MS.gene31648:intron | 25.0% |
| !! | AAGTATTGCACGAAAAATAA+CGG | + | chr1.1:11767262-11767281 | MS.gene31648:CDS | 25.0% |
| !! | AATAAATCTTTAAAAGGGAC+AGG | + | chr1.1:11769713-11769732 | MS.gene31648:intron | 25.0% |
| !! | AATACACTCTAACATGATTT+TGG | + | chr1.1:11768085-11768104 | MS.gene31648:intron | 25.0% |
| !! | AGTGAAGATAAATTTTATGG+CGG | + | chr1.1:11768701-11768720 | MS.gene31648:CDS | 25.0% |
| !! | ATAAGAAGATTTTCATGACT+TGG | + | chr1.1:11769043-11769062 | MS.gene31648:intron | 25.0% |
| !! | ATTTTGTATAGTAACTGAGA+TGG | - | chr1.1:11769789-11769808 | None:intergenic | 25.0% |
| !! | GTATTGAAAGTGATTTTGAA+GGG | - | chr1.1:11768070-11768089 | None:intergenic | 25.0% |
| !! | TGTATTGAAAGTGATTTTGA+AGG | - | chr1.1:11768071-11768090 | None:intergenic | 25.0% |
| !! | TTAGAAGCAGATATACTTTT+AGG | + | chr1.1:11769494-11769513 | MS.gene31648:intron | 25.0% |
| !! | TTGTCATTTGGATTATATCT+TGG | + | chr1.1:11769440-11769459 | MS.gene31648:intron | 25.0% |
| !!! | CAAAAGAAAAAGGTACTATT+TGG | + | chr1.1:11770252-11770271 | MS.gene31648:intron | 25.0% |
| !!! | GTAAATTCTTTTGACTTTCA+TGG | + | chr1.1:11769119-11769138 | MS.gene31648:intron | 25.0% |
| !!! | TGATTTTGGCAAAAATTTAG+AGG | + | chr1.1:11768099-11768118 | MS.gene31648:intron | 25.0% |
| !!! | TGTGATAAATATGACTTGTT+TGG | + | chr1.1:11768034-11768053 | MS.gene31648:intron | 25.0% |
| !!! | TTGTAAAATTTTGGGGAAAT+TGG | + | chr1.1:11767373-11767392 | MS.gene31648:CDS | 25.0% |
| !!! | TTTTTTGTGTATTTTTAGGG+TGG | + | chr1.1:11767211-11767230 | MS.gene31648:intron | 25.0% |
| AATGTTATCTGCAGAACAAA+AGG | - | chr1.1:11768925-11768944 | None:intergenic | 30.0% | |
| ACTACTTGAATCTAAGCATT+TGG | - | chr1.1:11768240-11768259 | None:intergenic | 30.0% | |
| AGAAGTTTGAACAGATAGTT+AGG | - | chr1.1:11770419-11770438 | None:intergenic | 30.0% | |
| AGCTGACAAATGAATTTCTA+TGG | + | chr1.1:11770312-11770331 | MS.gene31648:intron | 30.0% | |
| ATAGATTCACACAAACAAAG+TGG | - | chr1.1:11768595-11768614 | None:intergenic | 30.0% | |
| ATGCAAGATTGAGTAGTTTA+AGG | + | chr1.1:11767665-11767684 | MS.gene31648:intron | 30.0% | |
| CAGTTAGGTGATTAAATGAT+TGG | - | chr1.1:11769900-11769919 | None:intergenic | 30.0% | |
| CCTCTATTAAAGAATTCTTC+GGG | - | chr1.1:11769210-11769229 | None:intergenic | 30.0% | |
| CTAAAAAACTTCATCACACA+AGG | - | chr1.1:11769091-11769110 | None:intergenic | 30.0% | |
| CTAATTGGGTTAAATCAATG+TGG | - | chr1.1:11769345-11769364 | None:intergenic | 30.0% | |
| GATCAAAGATTGTTTCAGTT+AGG | - | chr1.1:11768313-11768332 | None:intergenic | 30.0% | |
| GATTGTTCATAACTCATAAG+TGG | + | chr1.1:11767740-11767759 | MS.gene31648:intron | 30.0% | |
| GTGAAGTTTAAAGACAAAAG+TGG | + | chr1.1:11767980-11767999 | MS.gene31648:intron | 30.0% | |
| TAAGTTAGGGTAGAGATTAA+TGG | - | chr1.1:11769854-11769873 | None:intergenic | 30.0% | |
| TAGATTCACACAAACAAAGT+GGG | - | chr1.1:11768594-11768613 | None:intergenic | 30.0% | |
| TCAATTTCCTATTACAGTAG+AGG | - | chr1.1:11770128-11770147 | None:intergenic | 30.0% | |
| TCATCTATCTAATCAGTGAT+GGG | + | chr1.1:11770864-11770883 | MS.gene31648:CDS | 30.0% | |
| TCATTTGGATTATATCTTGG+TGG | + | chr1.1:11769443-11769462 | MS.gene31648:intron | 30.0% | |
| TCTACTGTAATAGGAAATTG+AGG | + | chr1.1:11770127-11770146 | MS.gene31648:intron | 30.0% | |
| TGAGATGATTATGTCAAACT+GGG | + | chr1.1:11770280-11770299 | MS.gene31648:intron | 30.0% | |
| TGCAAGATTGAGTAGTTTAA+GGG | + | chr1.1:11767666-11767685 | MS.gene31648:intron | 30.0% | |
| TGGTTGTAAATAACAGTAGT+TGG | - | chr1.1:11769880-11769899 | None:intergenic | 30.0% | |
| TGTCCGTTAATTATCATCAT+TGG | + | chr1.1:11769990-11770009 | MS.gene31648:intron | 30.0% | |
| TTGAGATGATTATGTCAAAC+TGG | + | chr1.1:11770279-11770298 | MS.gene31648:intron | 30.0% | |
| TTTCGCTAAGCAAAAGAAAA+AGG | + | chr1.1:11770242-11770261 | MS.gene31648:intron | 30.0% | |
| TTTGGCAAAAATTTAGAGGT+CGG | + | chr1.1:11768103-11768122 | MS.gene31648:intron | 30.0% | |
| ! | ACTTCTGTAATTTTATCCTG+CGG | + | chr1.1:11770433-11770452 | MS.gene31648:intron | 30.0% |
| ! | AGATTTTTCATACGCTATCT+TGG | - | chr1.1:11767791-11767810 | None:intergenic | 30.0% |
| ! | ATGATGATAATTAACGGACA+AGG | - | chr1.1:11769990-11770009 | None:intergenic | 30.0% |
| ! | ATTACTTCCTTGATTTTGAG+TGG | + | chr1.1:11770098-11770117 | MS.gene31648:intron | 30.0% |
| ! | TGGTTTTTATTAAAGGCTGT+TGG | + | chr1.1:11768726-11768745 | MS.gene31648:CDS | 30.0% |
| !! | ACAGTAGTTGGTAATAAGTT+AGG | - | chr1.1:11769868-11769887 | None:intergenic | 30.0% |
| !! | AGTGTTGCTTGGTTAATTTA+TGG | + | chr1.1:11769371-11769390 | MS.gene31648:intron | 30.0% |
| !! | CAGTAGTTGGTAATAAGTTA+GGG | - | chr1.1:11769867-11769886 | None:intergenic | 30.0% |
| !! | GCAATTTAGTCTTTTGCATT+AGG | + | chr1.1:11768180-11768199 | MS.gene31648:intron | 30.0% |
| !! | TGAATCTGTTTTTCATGATG+CGG | + | chr1.1:11767340-11767359 | MS.gene31648:CDS | 30.0% |
| !! | TTAATGGGGTATTGGTAAAA+AGG | + | chr1.1:11769645-11769664 | MS.gene31648:intron | 30.0% |
| !!! | AATTTGTTTTGTTCAGGCAT+CGG | + | chr1.1:11770673-11770692 | MS.gene31648:intron | 30.0% |
| !!! | AGCTTTTTCATAAGCTATCT+TGG | - | chr1.1:11767495-11767514 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTGGTTTTGAT+GGG | + | chr1.1:11767221-11767240 | MS.gene31648:intron | 30.0% |
| !!! | GACTATTTTCTTGTTTTCGT+TGG | + | chr1.1:11768543-11768562 | MS.gene31648:intron | 30.0% |
| !!! | GCTATCAATTTGTTTTGTTC+AGG | + | chr1.1:11770667-11770686 | MS.gene31648:intron | 30.0% |
| !!! | TAGAGTTTCTTTTTTGGCAA+CGG | - | chr1.1:11769022-11769041 | None:intergenic | 30.0% |
| !!! | TATTTTTAGGGTGGTTTTGA+TGG | + | chr1.1:11767220-11767239 | MS.gene31648:intron | 30.0% |
| AACGAATAGAGTTGTCAGTT+AGG | - | chr1.1:11769915-11769934 | None:intergenic | 35.0% | |
| AATCTATGAGCTGAACGAAT+TGG | + | chr1.1:11768608-11768627 | MS.gene31648:intron | 35.0% | |
| AATTATGAGAAGGATGACGA+TGG | + | chr1.1:11769601-11769620 | MS.gene31648:intron | 35.0% | |
| ACGCTATCTTGGAAAACTTA+TGG | - | chr1.1:11767780-11767799 | None:intergenic | 35.0% | |
| AGAGTTAATGCTATTGCAAG+AGG | + | chr1.1:11770722-11770741 | MS.gene31648:CDS | 35.0% | |
| AGGATTACCACTCAAAATCA+AGG | - | chr1.1:11770108-11770127 | None:intergenic | 35.0% | |
| AGTTACTGCATTGTTTGTGT+TGG | + | chr1.1:11769411-11769430 | MS.gene31648:intron | 35.0% | |
| ATAATGCCTAACATGTTGAC+AGG | - | chr1.1:11768412-11768431 | None:intergenic | 35.0% | |
| ATCTATGAGCTGAACGAATT+GGG | + | chr1.1:11768609-11768628 | MS.gene31648:intron | 35.0% | |
| ATTATGAGAAGGATGACGAT+GGG | + | chr1.1:11769602-11769621 | MS.gene31648:intron | 35.0% | |
| ATTCATCAAAACAGTCCTGA+AGG | - | chr1.1:11768460-11768479 | None:intergenic | 35.0% | |
| CAATAGCATTAACTCTGATC+TGG | - | chr1.1:11770718-11770737 | None:intergenic | 35.0% | |
| CCCGAAGAATTCTTTAATAG+AGG | + | chr1.1:11769207-11769226 | MS.gene31648:intron | 35.0% | |
| CTAGCTAATTCTCTTCTCAA+GGG | + | chr1.1:11769748-11769767 | MS.gene31648:intron | 35.0% | |
| CTGTTAACTCAAGATGATCT+TGG | - | chr1.1:11768662-11768681 | None:intergenic | 35.0% | |
| CTTGGTTAATTTATGGCTCA+TGG | + | chr1.1:11769378-11769397 | MS.gene31648:intron | 35.0% | |
| GAAATGGAACCCACATAAAA+TGG | - | chr1.1:11769309-11769328 | None:intergenic | 35.0% | |
| GAAGAGTTCACAATAGAGAT+AGG | - | chr1.1:11769817-11769836 | None:intergenic | 35.0% | |
| GCTTTCAATTTAGCCAAACA+AGG | + | chr1.1:11767109-11767128 | MS.gene31648:CDS | 35.0% | |
| GGAACAACCATATATGTTGA+TGG | + | chr1.1:11770902-11770921 | MS.gene31648:CDS | 35.0% | |
| GGAACTTCAAGTACTAGTAT+TGG | - | chr1.1:11770398-11770417 | None:intergenic | 35.0% | |
| GGAAGATGAATTCCCATTAT+CGG | + | chr1.1:11770754-11770773 | MS.gene31648:CDS | 35.0% | |
| GGTTCAGCATATACTATACA+AGG | - | chr1.1:11768378-11768397 | None:intergenic | 35.0% | |
| GTCATCTATCTAATCAGTGA+TGG | + | chr1.1:11770863-11770882 | MS.gene31648:CDS | 35.0% | |
| GTGAGTAATACTCTCTTTGT+TGG | - | chr1.1:11767058-11767077 | None:intergenic | 35.0% | |
| GTTACTGCATTGTTTGTGTT+GGG | + | chr1.1:11769412-11769431 | MS.gene31648:intron | 35.0% | |
| TAACTAATGTATGCACCTTC+AGG | + | chr1.1:11768442-11768461 | MS.gene31648:intron | 35.0% | |
| TCAACATGTTAGGCATTATG+AGG | + | chr1.1:11768413-11768432 | MS.gene31648:intron | 35.0% | |
| TGGTAATCCTCTACTGTAAT+AGG | + | chr1.1:11770118-11770137 | MS.gene31648:intron | 35.0% | |
| TGTTGGGTATACTTGTCATT+TGG | + | chr1.1:11769428-11769447 | MS.gene31648:intron | 35.0% | |
| TTCTTTGATCTGCTTGAGAA+TGG | + | chr1.1:11768567-11768586 | MS.gene31648:intron | 35.0% | |
| ! | AGAGTATTACTCACCTCTAA+TGG | + | chr1.1:11767064-11767083 | MS.gene31648:CDS | 35.0% |
| ! | AGATAAATTTTATGGCGGCA+TGG | + | chr1.1:11768706-11768725 | MS.gene31648:CDS | 35.0% |
| ! | ATAATGGGAATTCATCTTCC+AGG | - | chr1.1:11770754-11770773 | None:intergenic | 35.0% |
| ! | GGATTCTATTCATCTGAAAC+AGG | + | chr1.1:11768630-11768649 | MS.gene31648:intron | 35.0% |
| ! | TATGTCCCACCATTTTATGT+GGG | + | chr1.1:11769297-11769316 | MS.gene31648:intron | 35.0% |
| ! | TTATGTCCCACCATTTTATG+TGG | + | chr1.1:11769296-11769315 | MS.gene31648:intron | 35.0% |
| !! | TCAAGTACTAGTATTGGCTT+CGG | - | chr1.1:11770392-11770411 | None:intergenic | 35.0% |
| !! | TTCAGTTACTGATTCTGTTG+TGG | + | chr1.1:11767286-11767305 | MS.gene31648:CDS | 35.0% |
| !!! | AGAGTTTCTTTTTTGGCAAC+GGG | - | chr1.1:11769021-11769040 | None:intergenic | 35.0% |
| AATAAACAGTGCACTCTAGG+AGG | - | chr1.1:11769948-11769967 | None:intergenic | 40.0% | |
| AATGGCGACGATATTTCTCA+TGG | + | chr1.1:11767082-11767101 | MS.gene31648:CDS | 40.0% | |
| AGAAATATCGTCGCCATTAG+AGG | - | chr1.1:11767080-11767099 | None:intergenic | 40.0% | |
| AGATGAATTCCCATTATCGG+TGG | + | chr1.1:11770757-11770776 | MS.gene31648:CDS | 40.0% | |
| AGCAACACTCACTCTCTAAT+TGG | - | chr1.1:11769360-11769379 | None:intergenic | 40.0% | |
| AGTAACTGAGATGGTTGCAA+GGG | - | chr1.1:11769780-11769799 | None:intergenic | 40.0% | |
| ATATAGTGTCCGGGGTTAAT+GGG | + | chr1.1:11769630-11769649 | MS.gene31648:intron | 40.0% | |
| ATGGAACCCACATAAAATGG+TGG | - | chr1.1:11769306-11769325 | None:intergenic | 40.0% | |
| ATTCAAATGGGGCCTAAGTT+TGG | + | chr1.1:11767925-11767944 | MS.gene31648:intron | 40.0% | |
| ATTTAGCCAAACAAGGATGC+AGG | + | chr1.1:11767116-11767135 | MS.gene31648:CDS | 40.0% | |
| CAAACACTCGCTCTCTTATT+GGG | + | chr1.1:11769263-11769282 | MS.gene31648:intron | 40.0% | |
| CAATGAAGATCGAATCGATC+CGG | + | chr1.1:11768270-11768289 | MS.gene31648:intron | 40.0% | |
| CTATAACAGAGAAACTGCAC+AGG | - | chr1.1:11770493-11770512 | None:intergenic | 40.0% | |
| CTGTGCTCCATCAACATATA+TGG | - | chr1.1:11770912-11770931 | None:intergenic | 40.0% | |
| GAGAATAAACAGTGCACTCT+AGG | - | chr1.1:11769951-11769970 | None:intergenic | 40.0% | |
| GAGTTGCATCGTTGTAACAA+AGG | + | chr1.1:11770012-11770031 | MS.gene31648:intron | 40.0% | |
| GATGAATTCCCATTATCGGT+GGG | + | chr1.1:11770758-11770777 | MS.gene31648:CDS | 40.0% | |
| GCAACACTCACTCTCTAATT+GGG | - | chr1.1:11769359-11769378 | None:intergenic | 40.0% | |
| GCTAGCTAATTCTCTTCTCA+AGG | + | chr1.1:11769747-11769766 | MS.gene31648:intron | 40.0% | |
| GGAAGTGGTTGAATTGGATA+TGG | + | chr1.1:11767307-11767326 | MS.gene31648:CDS | 40.0% | |
| GGGTTCCATTTCCAAAATGT+AGG | + | chr1.1:11769317-11769336 | MS.gene31648:intron | 40.0% | |
| TAGTAACTGAGATGGTTGCA+AGG | - | chr1.1:11769781-11769800 | None:intergenic | 40.0% | |
| TATTAAAGGCTGTTGGCCAA+AGG | + | chr1.1:11768733-11768752 | MS.gene31648:CDS | 40.0% | |
| TCAAACACTCGCTCTCTTAT+TGG | + | chr1.1:11769262-11769281 | MS.gene31648:intron | 40.0% | |
| TCAAGGAAGTAATAAGGTGC+AGG | - | chr1.1:11770091-11770110 | None:intergenic | 40.0% | |
| TGGAACCCACATAAAATGGT+GGG | - | chr1.1:11769305-11769324 | None:intergenic | 40.0% | |
| TGTTGTGGAAGTGGTTGAAT+TGG | + | chr1.1:11767301-11767320 | MS.gene31648:CDS | 40.0% | |
| TTCAAACAGGGCCTAAGTTT+AGG | + | chr1.1:11767625-11767644 | MS.gene31648:intron | 40.0% | |
| ! | AAGACAAAAGTGGTTCTGCT+TGG | + | chr1.1:11767990-11768009 | MS.gene31648:intron | 40.0% |
| ! | AGACAAAAGTGGTTCTGCTT+GGG | + | chr1.1:11767991-11768010 | MS.gene31648:intron | 40.0% |
| ! | ATATTGACTAATCCAACCGC+AGG | - | chr1.1:11770452-11770471 | None:intergenic | 40.0% |
| ! | ATTAGAGAGTGAGTGTTGCT+TGG | + | chr1.1:11769360-11769379 | MS.gene31648:intron | 40.0% |
| ! | CTGTAATTTTATCCTGCGGT+TGG | + | chr1.1:11770437-11770456 | MS.gene31648:intron | 40.0% |
| ! | GATAATTAACGGACAAGGTG+CGG | - | chr1.1:11769985-11770004 | None:intergenic | 40.0% |
| ! | GGCGGCATGGTTTTTATTAA+AGG | + | chr1.1:11768719-11768738 | MS.gene31648:CDS | 40.0% |
| ! | TCAATGTGGGTCCTACATTT+TGG | - | chr1.1:11769331-11769350 | None:intergenic | 40.0% |
| !! | ACTAGTATTGGCTTCGGAAT+AGG | - | chr1.1:11770386-11770405 | None:intergenic | 40.0% |
| !! | CGATAATGGGTTCAGAAAGA+GGG | + | chr1.1:11768799-11768818 | MS.gene31648:CDS | 40.0% |
| !! | TACTGATTCTGTTGTGGAAG+TGG | + | chr1.1:11767292-11767311 | MS.gene31648:CDS | 40.0% |
| !! | TCGATAATGGGTTCAGAAAG+AGG | + | chr1.1:11768798-11768817 | MS.gene31648:CDS | 40.0% |
| !! | TGGGTCCTACATTTTGGAAA+TGG | - | chr1.1:11769325-11769344 | None:intergenic | 40.0% |
| !! | TTTTAGGAGTTGTCTCTGCA+TGG | + | chr1.1:11769510-11769529 | MS.gene31648:intron | 40.0% |
| !!! | GAGTTTCTTTTTTGGCAACG+GGG | - | chr1.1:11769020-11769039 | None:intergenic | 40.0% |
| AAGGATGCGGAACTTCAACA+AGG | + | chr1.1:11768752-11768771 | MS.gene31648:CDS | 45.0% | |
| AATTCCCATTATCGGTGGGA+AGG | + | chr1.1:11770762-11770781 | MS.gene31648:CDS | 45.0% | |
| ACATCAAGCCATCTCTCAAG+TGG | - | chr1.1:11770821-11770840 | None:intergenic | 45.0% | |
| AGGATGCGGAACTTCAACAA+GGG | + | chr1.1:11768753-11768772 | MS.gene31648:CDS | 45.0% | |
| ATGGAGCACAGTCTATAACC+AGG | + | chr1.1:11770921-11770940 | MS.gene31648:CDS | 45.0% | |
| ATTATCGGTGGGAAGGGAAA+GGG | + | chr1.1:11770769-11770788 | MS.gene31648:CDS | 45.0% | |
| ATTCCCATTATCGGTGGGAA+GGG | + | chr1.1:11770763-11770782 | MS.gene31648:CDS | 45.0% | |
| CACATAAAGGAACGCATCCT+AGG | - | chr1.1:11770947-11770966 | None:intergenic | 45.0% | |
| CCAAGTCCTGTCAACATGTT+AGG | + | chr1.1:11768403-11768422 | MS.gene31648:intron | 45.0% | |
| CCTAACATGTTGACAGGACT+TGG | - | chr1.1:11768406-11768425 | None:intergenic | 45.0% | |
| CTATGGCTGTGATATCGATG+TGG | + | chr1.1:11770329-11770348 | MS.gene31648:intron | 45.0% | |
| CTGGAGTTCAGCAGTTAGTT+CGG | + | chr1.1:11768859-11768878 | MS.gene31648:CDS | 45.0% | |
| GAGTAGTTTAAGGGTCTGCT+TGG | + | chr1.1:11767675-11767694 | MS.gene31648:intron | 45.0% | |
| GATATAGTGTCCGGGGTTAA+TGG | + | chr1.1:11769629-11769648 | MS.gene31648:intron | 45.0% | |
| GGAATTCATCTTCCAGGTGA+AGG | - | chr1.1:11770748-11770767 | None:intergenic | 45.0% | |
| TAAGAGAGCGAGTGTTTGAG+AGG | - | chr1.1:11769261-11769280 | None:intergenic | 45.0% | |
| TACCAATACCCCATTAACCC+CGG | - | chr1.1:11769642-11769661 | None:intergenic | 45.0% | |
| TATAGTGTCCGGGGTTAATG+GGG | + | chr1.1:11769631-11769650 | MS.gene31648:intron | 45.0% | |
| TCACTGTCACCACCAAACTT+AGG | - | chr1.1:11767940-11767959 | None:intergenic | 45.0% | |
| TGGAGTTCAGCAGTTAGTTC+GGG | + | chr1.1:11768860-11768879 | MS.gene31648:CDS | 45.0% | |
| TGTTGAAGTTCCGCATCCTT+TGG | - | chr1.1:11768752-11768771 | None:intergenic | 45.0% | |
| TGTTGACAGGACTTGGCATT+TGG | - | chr1.1:11768399-11768418 | None:intergenic | 45.0% | |
| TTCACACCTGCATCCTTGTT+TGG | - | chr1.1:11767125-11767144 | None:intergenic | 45.0% | |
| TTTCCCTTCCCACCGATAAT+GGG | - | chr1.1:11770769-11770788 | None:intergenic | 45.0% | |
| ! | TCAGAAAGAGGGCTTTATCC+AGG | + | chr1.1:11768810-11768829 | MS.gene31648:CDS | 45.0% |
| !! | ATGGGCACTGATATAGTGTC+CGG | + | chr1.1:11769620-11769639 | MS.gene31648:intron | 45.0% |
| !!! | TTTTGTTCAGGCATCGGCTA+TGG | + | chr1.1:11770679-11770698 | MS.gene31648:intron | 45.0% |
| AAGGGAAAGGGCAGAGAAGT+TGG | + | chr1.1:11770781-11770800 | MS.gene31648:CDS | 50.0% | |
| AAGGTGCAGGAAAGCCACTT+CGG | - | chr1.1:11770078-11770097 | None:intergenic | 50.0% | |
| AGTGACTCTATCCTCCGAAG+TGG | + | chr1.1:11770061-11770080 | MS.gene31648:intron | 50.0% | |
| ATGCGGAACTTCAACAAGGG+TGG | + | chr1.1:11768756-11768775 | MS.gene31648:CDS | 50.0% | |
| CAAATGGGGCCTAAGTTTGG+TGG | + | chr1.1:11767928-11767947 | MS.gene31648:intron | 50.0% | |
| CACAGTCTATAACCAGGCCT+AGG | + | chr1.1:11770927-11770946 | MS.gene31648:CDS | 50.0% | |
| CAGAGAAACTGCACAGGACA+TGG | - | chr1.1:11770487-11770506 | None:intergenic | 50.0% | |
| CATTATCGGTGGGAAGGGAA+AGG | + | chr1.1:11770768-11770787 | MS.gene31648:CDS | 50.0% | |
| CTTTCCCTTCCCACCGATAA+TGG | - | chr1.1:11770770-11770789 | None:intergenic | 50.0% | |
| GATGGGTCATGCTACATGAC+AGG | + | chr1.1:11770881-11770900 | MS.gene31648:CDS | 50.0% | |
| GGGTTCCAACTCAGATACTC+CGG | - | chr1.1:11768292-11768311 | None:intergenic | 50.0% | |
| TAACTGCTGAACTCCAGCCA+AGG | - | chr1.1:11768856-11768875 | None:intergenic | 50.0% | |
| TATTGCAAGAGGCCTTCACC+TGG | + | chr1.1:11770733-11770752 | MS.gene31648:CDS | 50.0% | |
| TGCGGAACTTCAACAAGGGT+GGG | + | chr1.1:11768757-11768776 | MS.gene31648:CDS | 50.0% | |
| ! | AAACAGTGCACTCTAGGAGG+AGG | - | chr1.1:11769945-11769964 | None:intergenic | 50.0% |
| ! | TCGATCCGGAGTATCTGAGT+TGG | + | chr1.1:11768284-11768303 | MS.gene31648:intron | 50.0% |
| !! | GGCAGAGAAGTTGGTGAAAG+AGG | + | chr1.1:11770790-11770809 | MS.gene31648:CDS | 50.0% |
| !! | TGGGCACTGATATAGTGTCC+GGG | + | chr1.1:11769621-11769640 | MS.gene31648:intron | 50.0% |
| !!! | TAGGGTGGTTTTGATGGGAG+AGG | + | chr1.1:11767226-11767245 | MS.gene31648:intron | 50.0% |
| AAAGGAACGCATCCTAGGCC+TGG | - | chr1.1:11770942-11770961 | None:intergenic | 55.0% | |
| AGGCAGCACCACTTGAGAGA+TGG | + | chr1.1:11770810-11770829 | MS.gene31648:CDS | 55.0% | |
| AGGCTGTTGGCCAAAGGATG+CGG | + | chr1.1:11768739-11768758 | MS.gene31648:CDS | 55.0% | |
| GTCCGGGGTTAATGGGGTAT+TGG | + | chr1.1:11769637-11769656 | MS.gene31648:intron | 55.0% | |
| TGCTGCATATGCCTCAGCCT+TGG | + | chr1.1:11768836-11768855 | MS.gene31648:CDS | 55.0% | |
| ! | AGTGCACTCTAGGAGGAGGA+GGG | - | chr1.1:11769941-11769960 | None:intergenic | 55.0% |
| !! | CAGGCATCGGCTATGGAGAT+AGG | + | chr1.1:11770686-11770705 | MS.gene31648:intron | 55.0% |
| !! | GGGCACTGATATAGTGTCCG+GGG | + | chr1.1:11769622-11769641 | MS.gene31648:intron | 55.0% |
| CTGAACTCCAGCCAAGGCTG+AGG | - | chr1.1:11768850-11768869 | None:intergenic | 60.0% | |
| GAGGCATATGCAGCAGCTCC+TGG | - | chr1.1:11768831-11768850 | None:intergenic | 60.0% | |
| GCATATGCCTCAGCCTTGGC+TGG | + | chr1.1:11768840-11768859 | MS.gene31648:CDS | 60.0% | |
| GTGCAGGAAAGCCACTTCGG+AGG | - | chr1.1:11770075-11770094 | None:intergenic | 60.0% | |
| ! | CAGTGCACTCTAGGAGGAGG+AGG | - | chr1.1:11769942-11769961 | None:intergenic | 60.0% |
| ! | GTGCACTCTAGGAGGAGGAG+GGG | - | chr1.1:11769940-11769959 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11767046 | 11770967 | 11767046 | ID=MS.gene31648 |
| chr1.1 | mRNA | 11767046 | 11770967 | 11767046 | ID=MS.gene31648.t1;Parent=MS.gene31648 |
| chr1.1 | exon | 11767046 | 11767137 | 11767046 | ID=MS.gene31648.t1.exon1;Parent=MS.gene31648.t1 |
| chr1.1 | CDS | 11767046 | 11767137 | 11767046 | ID=cds.MS.gene31648.t1;Parent=MS.gene31648.t1 |
| chr1.1 | exon | 11767229 | 11767425 | 11767229 | ID=MS.gene31648.t1.exon2;Parent=MS.gene31648.t1 |
| chr1.1 | CDS | 11767229 | 11767425 | 11767229 | ID=cds.MS.gene31648.t1;Parent=MS.gene31648.t1 |
| chr1.1 | exon | 11768652 | 11768881 | 11768652 | ID=MS.gene31648.t1.exon3;Parent=MS.gene31648.t1 |
| chr1.1 | CDS | 11768652 | 11768881 | 11768652 | ID=cds.MS.gene31648.t1;Parent=MS.gene31648.t1 |
| chr1.1 | exon | 11770689 | 11770967 | 11770689 | ID=MS.gene31648.t1.exon4;Parent=MS.gene31648.t1 |
| chr1.1 | CDS | 11770689 | 11770967 | 11770689 | ID=cds.MS.gene31648.t1;Parent=MS.gene31648.t1 |
| Gene Sequence |
| Protein sequence |
