AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053914

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053914.t1 MTR_5g053390 92.444 225 17 0 1 225 1 225 1.26e-156 434
MS.gene053914.t1 MTR_2g085280 72.881 236 64 0 1 236 1 236 6.47e-126 356
MS.gene053914.t1 MTR_2g085250 72.881 236 64 0 1 236 1 236 2.04e-125 355
MS.gene053914.t1 MTR_5g055100 72.458 236 65 0 1 236 1 236 1.02e-124 353
MS.gene053914.t1 MTR_5g045560 75.983 229 55 0 1 229 1 229 1.42e-123 350
MS.gene053914.t1 MTR_8g043650 66.094 233 79 0 1 233 1 233 6.03e-112 321
MS.gene053914.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 8.31e-110 315
MS.gene053914.t1 MTR_1g077360 66.667 225 75 0 1 225 1 225 6.35e-106 306
MS.gene053914.t1 MTR_1g105910 63.556 225 82 0 1 225 1 225 1.17e-103 300
MS.gene053914.t1 MTR_1g105920 66.216 222 75 0 1 222 1 222 3.68e-102 296
MS.gene053914.t1 MTR_2g030740 65.315 222 77 0 1 222 1 222 1.72e-101 294
MS.gene053914.t1 MTR_1g012570 64.865 222 78 0 1 222 1 222 2.69e-97 284
MS.gene053914.t1 MTR_0121s0080 59.657 233 93 1 1 233 1 232 6.29e-95 278
MS.gene053914.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 1.45e-94 276
MS.gene053914.t1 MTR_1g108510 61.277 235 73 3 1 225 1 227 2.19e-94 276
MS.gene053914.t1 MTR_3g052920 62.100 219 83 0 1 219 1 219 3.16e-94 276
MS.gene053914.t1 MTR_2g093190 61.702 235 72 3 1 225 1 227 3.64e-93 273
MS.gene053914.t1 MTR_1g105905 60.185 216 86 0 18 233 1 216 8.34e-92 269
MS.gene053914.t1 MTR_1g108580 57.447 235 82 3 1 225 1 227 1.21e-85 254
MS.gene053914.t1 MTR_3g052870 58.904 219 71 2 1 219 1 200 1.13e-82 246
MS.gene053914.t1 MTR_1g106070 64.835 182 64 0 1 182 1 182 5.36e-80 238
MS.gene053914.t1 MTR_7g062350 55.505 218 96 1 19 236 31 247 8.49e-80 240
MS.gene053914.t1 MTR_1g075570 58.427 178 60 1 18 195 1 164 4.26e-58 182
MS.gene053914.t1 MTR_3g080940 44.724 199 106 1 1 195 1 199 4.56e-53 170
MS.gene053914.t1 MTR_0121s0100 64.341 129 46 0 1 129 1 129 6.60e-51 162
MS.gene053914.t1 MTR_3g030780 61.290 124 48 0 1 124 1 124 8.73e-48 154
MS.gene053914.t1 MTR_3g067910 62.963 108 40 0 21 128 2 109 1.04e-40 135
MS.gene053914.t1 MTR_8g086290 37.423 163 98 2 5 167 8 166 5.40e-30 110
MS.gene053914.t1 MTR_2g105290 35.503 169 103 2 5 172 8 171 3.00e-29 108
MS.gene053914.t1 MTR_7g028448 39.355 155 82 2 5 159 8 150 2.02e-28 106
MS.gene053914.t1 MTR_4g036915 39.355 155 82 2 5 159 8 150 2.02e-28 106
MS.gene053914.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 4.02e-28 102
MS.gene053914.t1 MTR_8g051580 41.985 131 64 3 9 128 2 131 2.22e-24 95.9
MS.gene053914.t1 MTR_1g047550 56.338 71 31 0 9 79 2 72 7.76e-24 94.4
MS.gene053914.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 1.28e-23 94.0
MS.gene053914.t1 MTR_3g067870 70.312 64 19 0 16 79 83 146 1.93e-23 92.8
MS.gene053914.t1 MTR_4g127140 35.359 181 103 4 5 175 8 184 8.51e-23 92.0
MS.gene053914.t1 MTR_1g063160 43.396 106 56 2 9 111 2 106 1.78e-22 90.9
MS.gene053914.t1 MTR_1g108500 53.125 96 24 1 22 117 110 184 4.73e-22 92.8
MS.gene053914.t1 MTR_1g054265 55.072 69 31 0 9 77 2 70 1.32e-21 88.2
MS.gene053914.t1 MTR_4g131030 52.113 71 34 0 9 79 2 72 1.39e-21 89.4
MS.gene053914.t1 MTR_3g067915 49.462 93 47 0 33 125 3 95 1.94e-21 85.9
MS.gene053914.t1 MTR_8g046350 49.351 77 39 0 9 85 2 78 5.01e-21 86.7
MS.gene053914.t1 MTR_4g094632 36.667 150 78 5 9 158 2 134 9.07e-20 83.2
MS.gene053914.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 3.30e-18 79.7
MS.gene053914.t1 MTR_3g437790 34.483 145 74 5 26 159 30 164 3.09e-17 77.0
MS.gene053914.t1 MTR_4g093970 43.689 103 50 4 10 104 29 131 5.09e-17 77.8
MS.gene053914.t1 MTR_0003s0590 43.564 101 42 2 9 94 2 102 5.53e-17 77.8
MS.gene053914.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 1.42e-16 76.3
MS.gene053914.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 1.59e-16 76.3
MS.gene053914.t1 MTR_8g022970 33.987 153 98 2 8 159 17 167 2.39e-16 74.7
MS.gene053914.t1 MTR_8g033270 49.367 79 39 1 9 86 2 80 4.14e-16 75.5
MS.gene053914.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 4.23e-16 75.5
MS.gene053914.t1 MTR_4g102530 49.296 71 36 0 10 80 3 73 5.32e-16 74.3
MS.gene053914.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 5.49e-16 74.3
MS.gene053914.t1 MTR_8g033220 31.868 182 95 4 10 173 3 173 8.02e-16 74.3
MS.gene053914.t1 MTR_8g033220 31.868 182 95 4 10 173 3 173 8.40e-16 73.9
MS.gene053914.t1 MTR_4g109830 31.977 172 91 6 9 175 2 152 1.66e-15 73.6
MS.gene053914.t1 MTR_1g053070 51.471 68 33 0 9 76 2 69 2.68e-15 73.2
MS.gene053914.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 3.52e-15 72.8
MS.gene053914.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 5.00e-15 72.8
MS.gene053914.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.60e-15 72.0
MS.gene053914.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.99e-15 71.6
MS.gene053914.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 6.53e-15 71.6
MS.gene053914.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 7.95e-15 71.6
MS.gene053914.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 1.07e-14 70.9
MS.gene053914.t1 MTR_2g017865 48.529 68 35 0 9 76 17 84 1.10e-14 71.6
MS.gene053914.t1 MTR_7g016630 46.377 69 36 1 9 76 2 70 1.82e-14 70.9
MS.gene053914.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 2.64e-14 70.5
MS.gene053914.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 3.46e-14 68.9
MS.gene053914.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 5.68e-14 65.1
MS.gene053914.t1 MTR_3g109930 36.029 136 79 4 27 159 20 150 7.87e-14 67.8
MS.gene053914.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 8.93e-14 68.9
MS.gene053914.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.09e-13 68.6
MS.gene053914.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.21e-13 67.4
MS.gene053914.t1 MTR_4g084740 47.887 71 36 1 9 78 2 72 1.78e-13 68.9
MS.gene053914.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 2.60e-13 66.6
MS.gene053914.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 3.03e-13 67.4
MS.gene053914.t1 MTR_5g046790 42.169 83 42 2 9 85 2 84 5.21e-13 66.2
MS.gene053914.t1 MTR_1g038300 31.410 156 73 6 9 130 2 157 5.23e-13 66.6
MS.gene053914.t1 MTR_3g102570 46.479 71 37 1 9 78 2 72 5.74e-13 67.4
MS.gene053914.t1 MTR_7g075850 43.902 82 43 2 9 87 2 83 5.89e-13 66.6
MS.gene053914.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 6.82e-13 66.2
MS.gene053914.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 7.19e-13 66.2
MS.gene053914.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 8.79e-13 63.5
MS.gene053914.t1 MTR_2g461710 50.000 56 28 0 9 64 2 57 1.09e-12 61.6
MS.gene053914.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 3.35e-12 64.3
MS.gene053914.t1 MTR_4g093030 48.387 62 32 0 9 70 2 63 3.84e-12 62.8
MS.gene053914.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 4.04e-12 64.3
MS.gene053914.t1 MTR_3g084980 44.928 69 37 1 9 76 2 70 4.51e-12 64.3
MS.gene053914.t1 MTR_3g113030 26.818 220 134 7 9 226 2 196 9.80e-12 63.2
MS.gene053914.t1 MTR_4g051538 29.851 201 109 6 1 185 1 185 1.44e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053914.t1 AT5G60440 52.695 167 76 2 5 168 3 169 2.01e-53 174
MS.gene053914.t1 AT2G24840 48.447 161 72 3 9 163 63 218 1.97e-42 145
MS.gene053914.t1 AT1G01530 45.963 161 82 4 4 162 2 159 2.54e-37 131
MS.gene053914.t1 AT1G65360 39.474 228 121 6 5 225 3 220 3.19e-37 130
MS.gene053914.t1 AT4G36590 45.732 164 79 4 5 160 3 164 4.53e-36 128
MS.gene053914.t1 AT3G04100 34.356 163 101 4 2 159 7 168 7.74e-24 95.1
MS.gene053914.t1 AT2G34440 36.486 148 92 2 9 156 2 147 5.98e-23 92.0
MS.gene053914.t1 AT3G66656 40.336 119 67 1 9 123 2 120 9.64e-22 89.0
MS.gene053914.t1 AT1G72350 34.211 152 67 2 9 160 43 161 1.94e-21 89.4
MS.gene053914.t1 AT2G45660 55.882 68 30 0 10 77 3 70 2.40e-18 79.3
MS.gene053914.t1 AT2G45660 55.882 68 30 0 10 77 3 70 6.32e-18 79.7
MS.gene053914.t1 AT4G22950 53.731 67 31 0 10 76 3 69 7.58e-18 78.6
MS.gene053914.t1 AT4G22950 53.731 67 31 0 10 76 3 69 2.26e-17 78.2
MS.gene053914.t1 AT4G22950 53.731 67 31 0 10 76 3 69 2.26e-17 78.2
MS.gene053914.t1 AT5G51870 54.167 72 33 0 5 76 21 92 2.36e-17 77.8
MS.gene053914.t1 AT1G28460 30.058 173 111 4 5 170 4 173 2.49e-17 77.4
MS.gene053914.t1 AT4G37940 54.412 68 31 0 9 76 2 69 3.45e-17 78.2
MS.gene053914.t1 AT4G37940 54.412 68 31 0 9 76 2 69 3.60e-17 77.8
MS.gene053914.t1 AT2G45650 29.412 221 116 6 9 208 2 203 3.64e-17 78.6
MS.gene053914.t1 AT4G37940 54.412 68 31 0 9 76 2 69 4.05e-17 76.6
MS.gene053914.t1 AT2G22540 31.481 162 93 4 9 169 2 146 7.13e-17 77.4
MS.gene053914.t1 AT2G22540 31.481 162 93 4 9 169 2 146 7.13e-17 77.4
MS.gene053914.t1 AT5G51870 55.224 67 30 0 10 76 3 69 8.66e-17 76.6
MS.gene053914.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.01e-16 75.5
MS.gene053914.t1 AT5G51870 52.703 74 33 1 3 76 8 79 1.12e-16 76.6
MS.gene053914.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.37e-16 74.3
MS.gene053914.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.54e-16 76.3
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 2 69 3.77e-16 75.1
MS.gene053914.t1 AT3G57390 52.941 68 32 0 9 76 2 69 3.93e-16 75.1
MS.gene053914.t1 AT1G29962 30.061 163 105 4 5 161 4 163 4.19e-16 74.3
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 2 69 4.38e-16 75.1
MS.gene053914.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.49e-16 75.5
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 3 70 4.59e-16 75.1
MS.gene053914.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.69e-16 73.6
MS.gene053914.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.71e-16 75.1
MS.gene053914.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.71e-16 75.1
MS.gene053914.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.75e-16 73.9
MS.gene053914.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.90e-16 75.5
MS.gene053914.t1 AT5G10140 50.725 69 33 1 9 76 2 70 5.86e-16 73.9
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 12 79 6.01e-16 74.7
MS.gene053914.t1 AT2G22630 51.471 68 33 0 9 76 2 69 6.34e-16 74.7
MS.gene053914.t1 AT2G22630 51.471 68 33 0 9 76 2 69 6.34e-16 74.7
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.81e-16 71.6
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.96e-16 72.8
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.96e-16 72.8
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.96e-16 72.8
MS.gene053914.t1 AT3G57390 52.941 68 32 0 9 76 2 69 7.93e-16 74.7
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 28 95 8.59e-16 74.7
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 9.53e-16 72.4
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 9.53e-16 72.4
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 9.53e-16 72.4
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 9.53e-16 72.4
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 9.53e-16 72.4
MS.gene053914.t1 AT3G54340 31.847 157 74 4 9 133 2 157 1.04e-15 73.9
MS.gene053914.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.19e-15 72.8
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.39e-15 73.2
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.39e-15 73.2
MS.gene053914.t1 AT4G18960 41.748 103 48 2 2 103 11 102 1.48e-15 73.9
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.53e-15 73.2
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.53e-15 73.2
MS.gene053914.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.53e-15 73.2
MS.gene053914.t1 AT4G24540 50.000 68 34 0 9 76 2 69 1.61e-15 73.2
MS.gene053914.t1 AT4G09960 48.529 68 35 0 9 76 97 164 1.80e-15 74.7
MS.gene053914.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.94e-15 72.4
MS.gene053914.t1 AT5G65070 32.979 188 99 8 9 173 2 185 3.35e-15 72.4
MS.gene053914.t1 AT1G17310 32.487 197 89 6 8 198 47 205 3.54e-15 72.4
MS.gene053914.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.30e-15 72.0
MS.gene053914.t1 AT2G42830 48.529 68 35 0 9 76 17 84 4.32e-15 72.8
MS.gene053914.t1 AT1G17310 32.487 197 89 6 8 198 58 216 4.38e-15 72.4
MS.gene053914.t1 AT2G42830 48.529 68 35 0 9 76 17 84 4.40e-15 72.8
MS.gene053914.t1 AT3G61120 51.471 68 33 0 9 76 2 69 4.65e-15 72.4
MS.gene053914.t1 AT3G58780 47.887 71 37 0 6 76 14 84 5.01e-15 72.4
MS.gene053914.t1 AT3G58780 47.887 71 37 0 6 76 20 90 5.16e-15 72.4
MS.gene053914.t1 AT4G11880 52.941 68 31 1 10 76 3 70 8.21e-15 70.5
MS.gene053914.t1 AT4G11880 52.941 68 31 1 10 76 3 70 8.21e-15 70.5
MS.gene053914.t1 AT4G11880 52.941 68 31 1 10 76 3 70 1.21e-14 70.9
MS.gene053914.t1 AT4G11880 52.941 68 31 1 10 76 3 70 1.21e-14 70.9
MS.gene053914.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.30e-14 71.2
MS.gene053914.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.36e-14 71.6
MS.gene053914.t1 AT5G23260 46.667 75 38 1 5 77 14 88 1.68e-14 71.2
MS.gene053914.t1 AT5G23260 46.667 75 38 1 5 77 14 88 1.79e-14 71.2
MS.gene053914.t1 AT5G65070 33.000 200 115 8 9 196 2 194 2.52e-14 70.1
MS.gene053914.t1 AT2G14210 47.826 69 35 1 9 76 2 70 2.68e-14 70.1
MS.gene053914.t1 AT1G77950 46.479 71 37 1 9 78 2 72 3.23e-14 70.5
MS.gene053914.t1 AT1G77950 46.479 71 37 1 9 78 2 72 3.23e-14 70.5
MS.gene053914.t1 AT1G77950 46.479 71 37 1 9 78 2 72 3.23e-14 70.5
MS.gene053914.t1 AT1G77950 46.479 71 37 1 9 78 2 72 3.23e-14 70.5
MS.gene053914.t1 AT2G22540 30.864 162 89 5 9 169 2 141 3.39e-14 70.1
MS.gene053914.t1 AT2G14210 47.826 69 35 1 9 76 2 70 3.53e-14 70.1
MS.gene053914.t1 AT5G23260 47.887 71 35 1 9 77 2 72 4.96e-14 69.7
MS.gene053914.t1 AT5G23260 47.887 71 35 1 9 77 2 72 5.17e-14 69.3
MS.gene053914.t1 AT1G77980 47.887 71 36 1 9 78 2 72 5.61e-14 70.5
MS.gene053914.t1 AT5G65050 46.377 69 36 1 9 76 2 70 6.29e-14 68.2
MS.gene053914.t1 AT5G65070 33.533 167 77 6 9 171 2 138 6.79e-14 67.4
MS.gene053914.t1 AT5G65070 43.750 80 41 2 9 87 2 78 7.30e-14 68.6
MS.gene053914.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.13e-13 67.8
MS.gene053914.t1 AT1G22130 36.290 124 75 3 9 130 2 123 1.21e-13 69.7
MS.gene053914.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.26e-13 67.4
MS.gene053914.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.27e-13 67.4
MS.gene053914.t1 AT1G47760 41.791 67 39 0 9 75 2 68 1.54e-13 67.0
MS.gene053914.t1 AT5G60910 46.377 69 36 1 9 76 2 70 1.67e-13 68.2
MS.gene053914.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.81e-13 68.2
MS.gene053914.t1 AT1G26310 46.377 69 36 1 9 76 2 70 1.95e-13 68.2
MS.gene053914.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.16e-13 67.8
MS.gene053914.t1 AT5G20240 45.714 70 36 1 9 76 2 71 4.11e-13 65.1
MS.gene053914.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.40e-13 66.2
MS.gene053914.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.60e-13 65.9
MS.gene053914.t1 AT5G20240 45.714 70 36 1 9 76 2 71 5.06e-13 66.2
MS.gene053914.t1 AT1G69120 43.478 69 38 1 9 76 2 70 5.14e-13 66.6
MS.gene053914.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.76e-13 65.9
MS.gene053914.t1 AT4G37435 39.773 88 48 2 9 91 2 89 9.80e-13 65.1
MS.gene053914.t1 AT1G69120 43.478 69 38 1 9 76 2 70 1.06e-12 66.2
MS.gene053914.t1 AT3G58780 49.180 61 31 0 6 66 14 74 1.67e-12 65.5
MS.gene053914.t1 AT3G58780 49.180 61 31 0 6 66 14 74 2.53e-12 65.1
MS.gene053914.t1 AT5G65070 50.877 57 28 0 9 65 2 58 2.58e-12 64.7
MS.gene053914.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.71e-12 63.9
MS.gene053914.t1 AT1G28450 40.541 74 44 0 5 78 4 77 2.90e-12 63.5
MS.gene053914.t1 AT1G71692 44.286 70 38 1 9 77 2 71 3.31e-12 63.9
MS.gene053914.t1 AT1G24260 46.377 69 36 1 9 76 2 70 3.34e-12 64.3
MS.gene053914.t1 AT1G24260 46.377 69 36 1 9 76 2 70 3.47e-12 64.7
MS.gene053914.t1 AT1G24260 46.377 69 36 1 9 76 2 70 3.47e-12 64.7
MS.gene053914.t1 AT3G02310 44.928 69 37 1 9 76 2 70 3.54e-12 63.9
MS.gene053914.t1 AT3G02310 44.928 69 37 1 9 76 2 70 6.02e-12 63.9
MS.gene053914.t1 AT2G03710 51.786 56 27 0 9 64 2 57 6.65e-12 63.9
MS.gene053914.t1 AT2G03710 45.714 70 36 2 9 76 2 71 6.78e-12 63.9
MS.gene053914.t1 AT5G65080 41.772 79 42 2 9 86 9 84 1.66e-11 61.6
MS.gene053914.t1 AT5G65080 50.000 54 27 0 9 62 9 62 3.96e-11 60.8
MS.gene053914.t1 AT5G49420 39.744 78 43 1 5 78 3 80 4.55e-11 62.0
MS.gene053914.t1 AT5G49490 35.238 105 61 3 5 103 41 144 5.03e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACTATTTCAACATT+TGG 0.272727 5.3:-43043589 None:intergenic
TTTGTTTGGCTTCAACAATA+TGG 0.287971 5.3:+43044044 MS.gene053914:CDS
AGAAGAATCAAGCTCAGTTT+TGG 0.347534 5.3:+43043773 MS.gene053914:CDS
CTATGACTATTTCAACATTT+GGG 0.358955 5.3:-43043588 None:intergenic
ATTGAATCTTCTTGAGGATC+TGG 0.388433 5.3:-43043979 None:intergenic
TGGTGGAATTGTCCTATTGA+TGG 0.405545 5.3:+43043793 MS.gene053914:CDS
ATGTTGCAACCACATTTGTT+TGG 0.408052 5.3:+43044030 MS.gene053914:CDS
ATGACATCATGAAAATCATT+CGG 0.408528 5.3:+43043644 MS.gene053914:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.410403 5.3:+43044045 MS.gene053914:CDS
AGTGAGCTTTGCACTCTTTG+TGG 0.435768 5.3:+43043508 MS.gene053914:CDS
GCTTCGAGAAAGTCACTTGT+AGG 0.449108 5.3:-43043459 None:intergenic
TCCTATTGATGGGATGGATA+TGG 0.452820 5.3:+43043804 MS.gene053914:CDS
TGACATCATGAAAATCATTC+GGG 0.467021 5.3:+43043645 MS.gene053914:CDS
TGAATCATTCAAGAAGGCTC+TGG 0.478190 5.3:+43043834 MS.gene053914:CDS
AACAAATGTGGTTGCAACAT+AGG 0.478237 5.3:-43044027 None:intergenic
CCTTCTTGAATGATTCAAGT+TGG 0.496013 5.3:-43043828 None:intergenic
GGGTTCTGAAGAAATTCTGC+TGG 0.496408 5.3:-43044006 None:intergenic
AATCTTCTTGAGGATCTGGC+TGG 0.497439 5.3:-43043975 None:intergenic
ACCATATCCATCCCATCAAT+AGG 0.499417 5.3:-43043805 None:intergenic
TATCTTCTCACCTAGTGAAA+AGG 0.506975 5.3:+43043549 MS.gene053914:CDS
GGTGGAATTGTCCTATTGAT+GGG 0.509530 5.3:+43043794 MS.gene053914:CDS
TGTTGCGCAACATGCTGATA+AGG 0.512704 5.3:+43043873 MS.gene053914:CDS
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.3:-43044026 None:intergenic
CAAGGTGGACATGGTCCCCA+TGG 0.523876 5.3:+43044072 MS.gene053914:CDS
GCTGGCTCAGTTCATTCCCA+CGG 0.531199 5.3:-43043744 None:intergenic
TGATGTATTGACTCATATCA+AGG 0.531389 5.3:+43043699 MS.gene053914:CDS
GGAAAGATTGAATCTTCTTG+AGG 0.536124 5.3:-43043985 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.3:+43043470 MS.gene053914:CDS
ATGGGAGGACAAGGTGGACA+TGG 0.555996 5.3:+43044063 MS.gene053914:CDS
GCTCGGACACAATGGTGTTA+CGG 0.556895 5.3:-43043672 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.3:+43043469 MS.gene053914:CDS
GAATTGTCCTATTGATGGGA+TGG 0.578595 5.3:+43043798 MS.gene053914:CDS
TGGGAATGAACTGAGCCAGC+CGG 0.588710 5.3:+43043747 MS.gene053914:CDS
AGTCAATACATCATTGAGCT+CGG 0.593521 5.3:-43043689 None:intergenic
AACAATATGGGAGGACAAGG+TGG 0.597364 5.3:+43044057 MS.gene053914:CDS
CCAACTTGAATCATTCAAGA+AGG 0.607259 5.3:+43043828 MS.gene053914:CDS
TTCAACAATATGGGAGGACA+AGG 0.607830 5.3:+43044054 MS.gene053914:CDS
ATCATTCAAGAAGGCTCTGG+AGG 0.608190 5.3:+43043837 MS.gene053914:CDS
GATTAGATCAAGAAATCCCA+TGG 0.608568 5.3:-43044089 None:intergenic
GCTGATAAGGTTGAAATGCA+AGG 0.616187 5.3:+43043886 MS.gene053914:CDS
TTTGGCTTCAACAATATGGG+AGG 0.620361 5.3:+43044048 MS.gene053914:CDS
ATCATTGAGCTCGGACACAA+TGG 0.621229 5.3:-43043680 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.621524 5.3:+43044073 MS.gene053914:CDS
GGATCTGGCTGGTTCTCAAG+AGG 0.622631 5.3:-43043964 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.3:-43043483 None:intergenic
GCGGAAAGAAAACTCGAGGT+CGG 0.635901 5.3:+43043398 MS.gene053914:CDS
ATTAGATCAAGAAATCCCAT+GGG 0.651611 5.3:-43044088 None:intergenic
CATAGATCGTTATCTCTCTG+AGG 0.659651 5.3:+43043606 MS.gene053914:CDS
TAGACATCGAAAAGAACCGT+GGG 0.671283 5.3:+43043728 MS.gene053914:CDS
TCGAGCGGAAAGAAAACTCG+AGG 0.680063 5.3:+43043394 MS.gene053914:CDS
TTGTTGAAGCCAAACAAATG+TGG 0.689285 5.3:-43044039 None:intergenic
TGTGCTTCAGCCATGTCGAG+CGG 0.709182 5.3:+43043379 None:intergenic
CTAGACATCGAAAAGAACCG+TGG 0.721163 5.3:+43043727 MS.gene053914:CDS
TTAGATCAAGAAATCCCATG+GGG 0.786091 5.3:-43044087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGACATCATGAAAATCATT+CGG + chr5.3:43043644-43043663 MS.gene053914:CDS 25.0%
! ATTTCCTTCAAAAACTTGAA+GGG - chr5.3:43043926-43043945 None:intergenic 25.0%
! CTATGACTATTTCAACATTT+GGG - chr5.3:43043591-43043610 None:intergenic 25.0%
! TCTATGACTATTTCAACATT+TGG - chr5.3:43043592-43043611 None:intergenic 25.0%
!! AATGAAAATACCTTTTCACT+AGG - chr5.3:43043562-43043581 None:intergenic 25.0%
!! TTTCATGATGTCATCATTTT+GGG - chr5.3:43043638-43043657 None:intergenic 25.0%
!! TTTTCATGATGTCATCATTT+TGG - chr5.3:43043639-43043658 None:intergenic 25.0%
!!! AGTGAAAAGGTATTTTCATT+TGG + chr5.3:43043562-43043581 MS.gene053914:CDS 25.0%
CATTTCCTTCAAAAACTTGA+AGG - chr5.3:43043927-43043946 None:intergenic 30.0%
TGACATCATGAAAATCATTC+GGG + chr5.3:43043645-43043664 MS.gene053914:CDS 30.0%
TTTCCTTCAAAAACTTGAAG+GGG - chr5.3:43043925-43043944 None:intergenic 30.0%
! TTCATGATGTCATCATTTTG+GGG - chr5.3:43043637-43043656 None:intergenic 30.0%
! TTGTTTGGCTTCAACAATAT+GGG + chr5.3:43044045-43044064 MS.gene053914:CDS 30.0%
! TTTGTTTGGCTTCAACAATA+TGG + chr5.3:43044044-43044063 MS.gene053914:CDS 30.0%
!! CTTCAAGTTTTTGAAGGAAA+TGG + chr5.3:43043925-43043944 MS.gene053914:CDS 30.0%
!! TGATGTATTGACTCATATCA+AGG + chr5.3:43043699-43043718 MS.gene053914:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG - chr5.3:43044030-43044049 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG - chr5.3:43044029-43044048 None:intergenic 35.0%
AGTCAATACATCATTGAGCT+CGG - chr5.3:43043692-43043711 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG + chr5.3:43044030-43044049 MS.gene053914:CDS 35.0%
ATTGAATCTTCTTGAGGATC+TGG - chr5.3:43043982-43044001 None:intergenic 35.0%
CCAACTTGAATCATTCAAGA+AGG + chr5.3:43043828-43043847 MS.gene053914:CDS 35.0%
CCTTCTTGAATGATTCAAGT+TGG - chr5.3:43043831-43043850 None:intergenic 35.0%
GGAAAGATTGAATCTTCTTG+AGG - chr5.3:43043988-43044007 None:intergenic 35.0%
TATCTTCTCACCTAGTGAAA+AGG + chr5.3:43043549-43043568 MS.gene053914:CDS 35.0%
TTCAAAAACTTGAAGGGGTT+GGG - chr5.3:43043920-43043939 None:intergenic 35.0%
TTGTTGAAGCCAAACAAATG+TGG - chr5.3:43044042-43044061 None:intergenic 35.0%
! AGAAGAATCAAGCTCAGTTT+TGG + chr5.3:43043773-43043792 MS.gene053914:CDS 35.0%
! TGAGCTTGATTCTTCTTTTC+CGG - chr5.3:43043769-43043788 None:intergenic 35.0%
ACCATATCCATCCCATCAAT+AGG - chr5.3:43043808-43043827 None:intergenic 40.0%
CATAGATCGTTATCTCTCTG+AGG + chr5.3:43043606-43043625 MS.gene053914:CDS 40.0%
CTTCAAAAACTTGAAGGGGT+TGG - chr5.3:43043921-43043940 None:intergenic 40.0%
GAATTGTCCTATTGATGGGA+TGG + chr5.3:43043798-43043817 MS.gene053914:CDS 40.0%
GCTGATAAGGTTGAAATGCA+AGG + chr5.3:43043886-43043905 MS.gene053914:CDS 40.0%
GGTGGAATTGTCCTATTGAT+GGG + chr5.3:43043794-43043813 MS.gene053914:CDS 40.0%
TAGACATCGAAAAGAACCGT+GGG + chr5.3:43043728-43043747 MS.gene053914:CDS 40.0%
TCCTATTGATGGGATGGATA+TGG + chr5.3:43043804-43043823 MS.gene053914:CDS 40.0%
TGAATCATTCAAGAAGGCTC+TGG + chr5.3:43043834-43043853 MS.gene053914:CDS 40.0%
TGGTGGAATTGTCCTATTGA+TGG + chr5.3:43043793-43043812 MS.gene053914:CDS 40.0%
TTCAACAATATGGGAGGACA+AGG + chr5.3:43044054-43044073 MS.gene053914:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.3:43044048-43044067 MS.gene053914:CDS 40.0%
!! AGAATCAAGCTCAGTTTTGG+TGG + chr5.3:43043776-43043795 MS.gene053914:CDS 40.0%
!! CAACCCCTTCAAGTTTTTGA+AGG + chr5.3:43043919-43043938 MS.gene053914:CDS 40.0%
!!! TGATGTCATCATTTTGGGGT+AGG - chr5.3:43043633-43043652 None:intergenic 40.0%
AACAATATGGGAGGACAAGG+TGG + chr5.3:43044057-43044076 MS.gene053914:CDS 45.0%
AATCTTCTTGAGGATCTGGC+TGG - chr5.3:43043978-43043997 None:intergenic 45.0%
AGTGAGCTTTGCACTCTTTG+TGG + chr5.3:43043508-43043527 MS.gene053914:CDS 45.0%
ATCATTGAGCTCGGACACAA+TGG - chr5.3:43043683-43043702 None:intergenic 45.0%
CTAGACATCGAAAAGAACCG+TGG + chr5.3:43043727-43043746 MS.gene053914:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr5.3:43043486-43043505 None:intergenic 45.0%
GCTTCGAGAAAGTCACTTGT+AGG - chr5.3:43043462-43043481 None:intergenic 45.0%
TGTTGCGCAACATGCTGATA+AGG + chr5.3:43043873-43043892 MS.gene053914:CDS 45.0%
! ATCATTCAAGAAGGCTCTGG+AGG + chr5.3:43043837-43043856 MS.gene053914:CDS 45.0%
! CTTGATTCTTCTTTTCCGGC+TGG - chr5.3:43043765-43043784 None:intergenic 45.0%
!! GGGTTCTGAAGAAATTCTGC+TGG - chr5.3:43044009-43044028 None:intergenic 45.0%
GCGGAAAGAAAACTCGAGGT+CGG + chr5.3:43043398-43043417 MS.gene053914:CDS 50.0%
TCGAGCGGAAAGAAAACTCG+AGG + chr5.3:43043394-43043413 MS.gene053914:CDS 50.0%
! GCTCGGACACAATGGTGTTA+CGG - chr5.3:43043675-43043694 None:intergenic 50.0%
AAGGTGGACATGGTCCCCAT+GGG + chr5.3:43044073-43044092 MS.gene053914:CDS 55.0%
ATGGGAGGACAAGGTGGACA+TGG + chr5.3:43044063-43044082 MS.gene053914:CDS 55.0%
TGGGAATGAACTGAGCCAGC+CGG + chr5.3:43043747-43043766 MS.gene053914:CDS 55.0%
! GCTGGCTCAGTTCATTCCCA+CGG - chr5.3:43043747-43043766 None:intergenic 55.0%
! GGATCTGGCTGGTTCTCAAG+AGG - chr5.3:43043967-43043986 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.3:43043469-43043488 MS.gene053914:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.3:43043470-43043489 MS.gene053914:CDS 55.0%
CAAGGTGGACATGGTCCCCA+TGG + chr5.3:43044072-43044091 MS.gene053914:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 43043391 43044104 43043391 ID=MS.gene053914
chr5.3 mRNA 43043391 43044104 43043391 ID=MS.gene053914.t1;Parent=MS.gene053914
chr5.3 exon 43043391 43044104 43043391 ID=MS.gene053914.t1.exon1;Parent=MS.gene053914.t1
chr5.3 CDS 43043391 43044104 43043391 ID=cds.MS.gene053914.t1;Parent=MS.gene053914.t1
Gene Sequence

>MS.gene053914

ATGTCGAGCGGAAAGAAAACTCGAGGTCGGCAAAAGATTGAGATGAAAAACATGAGCGATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCATATGTTGCTCTAATTATCTTCTCACCTAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAATAGTCATAGATCGTTATCTCTCTGAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTCGGGATGACCGTAACACCATTGTGTCCGAGCTCAATGATGTATTGACTCATATCAAGGATGAACTAGACATCGAAAAGAACCGTGGGAATGAACTGAGCCAGCCGGAAAAGAAGAATCAAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGGATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGGAGGATCTTAAGAAACTTGTTGCGCAACATGCTGATAAGGTTGAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAAATGGTTCATCATCTAACATGCCTCTTGAGAACCAGCCAGATCCTCAAGAAGATTCAATCTTTCCAGCAGAATTTCTTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGACAAGGTGGACATGGTCCCCATGGGATTTCTTGA
Protein sequence

>MS.gene053914.t1

MSSGKKTRGRQKIEMKNMSDESSLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVEIVIDRYLSEVLPQNDDIMKIIRDDRNTIVSELNDVLTHIKDELDIEKNRGNELSQPEKKNQAQFWWNCPIDGMDMVQLESFKKALEDLKKLVAQHADKVEMQGTSTQPLQVFEGNGSSSNMPLENQPDPQEDSIFPAEFLQNPMLQPHLFGFNNMGGQGGHGPHGIS