AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054071


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054071.t1 MTR_1g027880 73.684 323 60 8 1 306 1 315 1.47e-154 439
MS.gene054071.t1 MTR_1g027880 54.225 142 26 2 297 399 54 195 4.68e-35 132
MS.gene054071.t1 MTR_1g027950 67.647 340 75 8 1 313 1 332 3.38e-148 425
MS.gene054071.t1 MTR_1g027950 49.306 144 28 3 300 399 57 199 6.50e-29 116
MS.gene054071.t1 MTR_1g027710 63.939 330 71 8 1 305 1 307 3.77e-130 376
MS.gene054071.t1 MTR_1g027710 50.350 143 31 2 297 399 52 194 2.89e-31 121
MS.gene054071.t1 MTR_6g044970 60.323 310 77 8 1 294 1 280 4.87e-117 343
MS.gene054071.t1 MTR_6g044970 49.254 134 32 3 300 397 50 183 1.74e-26 108
MS.gene054071.t1 MTR_3g028640 50.173 289 93 10 21 298 14 262 8.41e-83 254
MS.gene054071.t1 MTR_3g028640 37.857 140 48 3 297 397 32 171 1.07e-17 82.8
MS.gene054071.t1 MTR_1g028250 49.505 303 103 11 9 299 12 276 1.25e-82 254
MS.gene054071.t1 MTR_1g028250 40.559 143 44 6 297 398 42 184 8.76e-18 83.6
MS.gene054071.t1 MTR_1g027830 52.365 296 104 11 8 298 21 284 1.57e-82 266
MS.gene054071.t1 MTR_1g027830 43.066 137 38 5 303 399 59 195 5.65e-19 89.4
MS.gene054071.t1 MTR_1g027070 46.823 299 127 6 7 298 10 283 3.10e-77 253
MS.gene054071.t1 MTR_1g027050 50.000 306 116 10 10 286 1 298 5.01e-77 253
MS.gene054071.t1 MTR_1g027140 46.224 331 129 11 1 298 1 315 6.05e-76 250
MS.gene054071.t1 MTR_1g027030 45.399 326 135 11 1 295 1 314 1.96e-73 243
MS.gene054071.t1 MTR_1g027030 46.037 328 130 13 1 295 1 314 3.47e-73 243
MS.gene054071.t1 MTR_1g026950 43.253 289 118 9 7 282 3 258 1.03e-67 216
MS.gene054071.t1 MTR_1g027450 38.095 315 142 11 4 302 2 279 2.88e-61 199
MS.gene054071.t1 MTR_1g027180 40.989 283 118 9 19 285 19 268 8.22e-58 192
MS.gene054071.t1 MTR_1g027260 41.418 268 109 8 19 268 14 251 3.20e-56 187
MS.gene054071.t1 MTR_1g027380 37.162 296 141 6 27 311 23 284 3.99e-55 184
MS.gene054071.t1 MTR_1g026970 40.441 272 118 7 27 285 24 264 1.07e-54 183
MS.gene054071.t1 MTR_1g027520 40.074 272 111 9 4 259 3 238 9.92e-54 179
MS.gene054071.t1 MTR_1g027360 40.149 269 111 7 34 285 31 266 6.80e-53 179
MS.gene054071.t1 MTR_1g028280 37.500 272 124 7 4 275 3 228 1.09e-45 167
MS.gene054071.t1 MTR_1g028280 37.500 272 124 7 4 275 3 228 1.10e-45 167
MS.gene054071.t1 MTR_1g027990 35.117 299 140 11 8 292 19 277 1.11e-41 156
MS.gene054071.t1 MTR_1g028150 37.500 272 121 7 2 263 11 243 4.34e-41 146
MS.gene054071.t1 MTR_1g027680 35.870 276 143 11 20 292 30 274 7.15e-39 148
MS.gene054071.t1 MTR_1g028090 36.842 247 116 5 29 262 30 249 4.02e-38 140
MS.gene054071.t1 MTR_1g031510 32.468 231 125 8 37 263 35 238 8.11e-23 100
MS.gene054071.t1 MTR_1g031490 32.328 232 121 8 39 264 36 237 1.47e-21 94.0
MS.gene054071.t1 MTR_1g031450 30.657 274 131 12 1 264 1 225 1.35e-19 90.5
MS.gene054071.t1 MTR_1g031560 29.213 267 141 11 8 263 6 235 2.00e-19 90.9
MS.gene054071.t1 MTR_1g031535 29.963 267 137 13 5 264 2 225 7.12e-19 86.3
MS.gene054071.t1 MTR_1g031280 31.034 232 131 9 39 264 37 245 3.47e-18 87.0
MS.gene054071.t1 MTR_1g031520 31.727 249 121 12 28 263 22 234 4.18e-18 86.7
MS.gene054071.t1 MTR_1g027440 34.194 155 68 5 142 295 42 163 1.58e-16 82.0
MS.gene054071.t1 MTR_1g031200 53.030 66 25 2 38 97 21 86 1.55e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAGTATTAACTCTGTTT+TGG 0.257699 1.3:-13642828 MS.gene054071:CDS
CTTGATTCTGAGTTTAATTA+CGG 0.302941 1.3:-13642634 MS.gene054071:CDS
TTCGGATCACCACAGCTTGC+TGG 0.314538 1.3:+13640479 None:intergenic
GCAATCACCCTCTTCAATTC+CGG 0.325688 1.3:+13642747 None:intergenic
TATCAAATCGATGATCAGTT+TGG 0.341428 1.3:-13640245 MS.gene054071:CDS
GAACTTTGCGGCGAGAATAA+TGG 0.344364 1.3:-13642250 MS.gene054071:CDS
CCCCAAAACAGAGTTAATAC+TGG 0.350461 1.3:+13642826 None:intergenic
ATGAATTTCCTGGTATGAAA+TGG 0.352969 1.3:+13642324 None:intergenic
AACTTTGCGGCGAGAATAAT+GGG 0.354726 1.3:-13642249 MS.gene054071:CDS
TACCCGAAAAGAGTTAATAC+TGG 0.355589 1.3:+13640428 None:intergenic
CAAAAGCATAAAGATAGCTT+TGG 0.360227 1.3:+13640138 None:intergenic
AAAAGCATAAAGATAGCTTT+TGG 0.362256 1.3:+13642528 None:intergenic
ATTCATGGAATGCTACTCTA+TGG 0.365238 1.3:-13642307 MS.gene054071:CDS
ATTTCATACCAGGAAATTCA+TGG 0.378711 1.3:-13642322 MS.gene054071:CDS
ATCTGCGTCATCGTAATCAT+AGG 0.388076 1.3:+13642672 None:intergenic
GGGATCAAAGGTTGTGAGAT+TGG 0.390234 1.3:+13642693 None:intergenic
ACCGGACATCTTGAATGTTC+TGG 0.392948 1.3:-13642202 MS.gene054071:CDS
CAATCACCCTCTTCAATTCC+GGG 0.397957 1.3:+13642748 None:intergenic
ATGAAGAAGGTGGACATGTT+TGG 0.408749 1.3:+13642947 None:intergenic
TTGCAGGATAACTCGTACTT+CGG 0.409766 1.3:+13640461 None:intergenic
TCGGATCACCACAGCTTGTT+GGG 0.415110 1.3:+13642878 None:intergenic
TACAGATATGAATACCATCT+TGG 0.422016 1.3:-13642481 MS.gene054071:CDS
GTAGCATTCCATGAATTTCC+TGG 0.422974 1.3:+13642314 None:intergenic
TCTTCTCTGACACTGACATT+AGG 0.423782 1.3:+13642361 None:intergenic
CGTAATTAAACTCAGAATCA+AGG 0.423931 1.3:+13642635 None:intergenic
TCGCAGGATAACTCGTACTT+CGG 0.426923 1.3:+13642859 None:intergenic
TTGATTCTGAGTTTAATTAC+GGG 0.435625 1.3:-13642633 MS.gene054071:CDS
AAAAGCATAAAGATAGCTTT+GGG 0.441453 1.3:+13640139 None:intergenic
TTCGGATCACCACAGCTTGT+TGG 0.441646 1.3:+13642877 None:intergenic
TTGAATTACACCACCGGTAC+CGG 0.444829 1.3:-13642220 MS.gene054071:CDS
ACTACAACAACTACACAATT+CGG 0.445923 1.3:-13642780 MS.gene054071:CDS
ATCAAATCGATGATCAGTTT+GGG 0.454870 1.3:-13640244 MS.gene054071:CDS
AAAGGTTGTGAGATTGGATC+TGG 0.457133 1.3:+13642699 None:intergenic
TATCTGTGTCATTGTAATCA+TGG 0.458339 1.3:+13640270 None:intergenic
TTGGGAGTCGGAGTTGATGC+AGG 0.458879 1.3:+13640157 None:intergenic
TTTGGAGTCGGAGTTGATGC+AGG 0.462929 1.3:+13642546 None:intergenic
TGATTATTGCGAGTATCCAT+TGG 0.464794 1.3:-13642179 MS.gene054071:CDS
GGTCATTCTTAAGTCGAAAC+GGG 0.479658 1.3:+13642899 None:intergenic
GGGTCATTCTTAAGTCGAAA+CGG 0.487466 1.3:+13642898 None:intergenic
CAGATGGAAATCCTTCTTCA+TGG 0.491784 1.3:-13643034 MS.gene054071:CDS
TGCGGCAGACTTCTTTGTGA+GGG 0.503452 1.3:-13642506 MS.gene054071:CDS
ACAGATATGAATACCATCTT+GGG 0.511623 1.3:-13642480 MS.gene054071:CDS
GATTATTGCGAGTATCCATT+GGG 0.514746 1.3:-13642178 MS.gene054071:CDS
TCGGATCACCACAGCTTGCT+GGG 0.515506 1.3:+13640480 None:intergenic
ACCAGAACATTCAAGATGTC+CGG 0.515509 1.3:+13642201 None:intergenic
TGGTATGAAATGGATCGATC+TGG 0.523739 1.3:+13642334 None:intergenic
CACAGCAACCACCATGAAGA+AGG 0.533043 1.3:+13643023 None:intergenic
CCCAAAACAGAGTTAATACT+GGG 0.544239 1.3:+13642827 None:intergenic
TTGCGGCAGACTTCTTTGTG+AGG 0.547235 1.3:-13642507 MS.gene054071:CDS
GTGATGTTCCCGCATGAAGA+AGG 0.549305 1.3:+13642934 None:intergenic
GGTCCTTGTAGAGAACTTTG+CGG 0.556854 1.3:-13642262 MS.gene054071:CDS
GGGTCATTCATAAGTCGAAA+CGG 0.558279 1.3:+13640500 None:intergenic
ACATTCAAGATGTCCGGTAC+CGG 0.561336 1.3:+13642207 None:intergenic
ATAAAGATAGCTTTGGGAGT+CGG 0.572043 1.3:+13640145 None:intergenic
AAGACTCCTCGTACCCAAGA+TGG 0.572940 1.3:+13642467 None:intergenic
ACCCGAAAAGAGTTAATACT+GGG 0.574167 1.3:+13640429 None:intergenic
GAATGATGATCCTGAGTATG+TGG 0.574657 1.3:-13640189 MS.gene054071:CDS
GAATGATGATCCTGAGTATG+TGG 0.574657 1.3:-13642578 MS.gene054071:CDS
TTGGAGTCGGAGTTGATGCA+GGG 0.574932 1.3:+13642547 None:intergenic
ACAATTCGGCTAGTTGATCC+CGG 0.577912 1.3:-13642766 MS.gene054071:CDS
ATCGTAATCATAGGGATCAA+AGG 0.579714 1.3:+13642681 None:intergenic
TTGAAGACTGACATTCCCAA+TGG 0.584529 1.3:+13642163 None:intergenic
TCTGCGTCATCGTAATCATA+GGG 0.588443 1.3:+13642673 None:intergenic
ACATAGCAACAAGCTTCACT+TGG 0.593630 1.3:+13642398 None:intergenic
ATTGTAATCATGGGATTGAA+AGG 0.594601 1.3:+13640280 None:intergenic
TCTATGGATTTGAGCTATCG+TGG 0.596182 1.3:-13642291 MS.gene054071:CDS
ATCTGTGTCATTGTAATCAT+GGG 0.596402 1.3:+13640271 None:intergenic
AGATCGATCCATTTCATACC+AGG 0.601529 1.3:-13642332 MS.gene054071:CDS
TGGGAGTCGGAGTTGATGCA+GGG 0.603949 1.3:+13640158 None:intergenic
CATGTCCACCTTCTTCATGC+GGG 0.604504 1.3:-13642942 MS.gene054071:CDS
AGTTGATCCCGGAATTGAAG+AGG 0.607068 1.3:-13642755 MS.gene054071:CDS
GGATCTGTATCCACATACTC+AGG 0.607965 1.3:+13640179 None:intergenic
GGAGCTGTATCCACATACTC+AGG 0.616776 1.3:+13642568 None:intergenic
TCGCCGCAAAGTTCTCTACA+AGG 0.622871 1.3:+13642259 None:intergenic
TTCAAGATGTCCGGTACCGG+TGG 0.629052 1.3:+13642210 None:intergenic
TGCAAGTTGAATTACACCAC+CGG 0.629229 1.3:-13642226 MS.gene054071:CDS
AAGAATGACCCAACAAGCTG+TGG 0.631308 1.3:-13642886 MS.gene054071:CDS
ACATGTCCACCTTCTTCATG+CGG 0.632934 1.3:-13642943 MS.gene054071:CDS
GTTGATCCCGGAATTGAAGA+GGG 0.640516 1.3:-13642754 MS.gene054071:CDS
ATGTCAGTCTTCAAAAGATG+CGG 0.647327 1.3:-13642154 MS.gene054071:intron
TGAATACCATCTTGGGTACG+AGG 0.650794 1.3:-13642473 MS.gene054071:CDS
GGTACGAGGAGTCTTACTCT+CGG 0.657085 1.3:-13642459 MS.gene054071:CDS
ATGTTCCCGCATGAAGAAGG+TGG 0.658050 1.3:+13642937 None:intergenic
ATGGAAATCCTTCTTCATGG+TGG 0.667908 1.3:-13643031 MS.gene054071:CDS
TTTGAGCTATCGTGGATGAG+TGG 0.678784 1.3:-13642283 MS.gene054071:CDS
ATGAATGACCCAGCAAGCTG+TGG 0.696097 1.3:-13640488 MS.gene054071:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGTATAATAAATAG+GGG + chr1.3:13641288-13641307 None:intergenic 10.0%
!! GAAAAAAATGTATAATAAAT+AGG + chr1.3:13641290-13641309 None:intergenic 10.0%
!! AATATGAAAATTCTTATTCA+TGG - chr1.3:13642524-13642543 MS.gene054071:CDS 15.0%
!! ACATAACACAAAATAAAAAA+GGG + chr1.3:13642270-13642289 None:intergenic 15.0%
!! ACTAAAATAAAAGTAGAAAA+TGG - chr1.3:13641706-13641725 MS.gene054071:intron 15.0%
!! ATCCATTTAATAAAAAACTA+TGG - chr1.3:13642304-13642323 MS.gene054071:CDS 15.0%
!! ATTACGTAAGAATAAAAAAT+TGG - chr1.3:13641063-13641082 MS.gene054071:intron 15.0%
!! TACAAGATATATTGAAAAAA+GGG - chr1.3:13642042-13642061 MS.gene054071:intron 15.0%
!! TTACAAGATATATTGAAAAA+AGG - chr1.3:13642041-13642060 MS.gene054071:intron 15.0%
!!! AACATATTTTTTTAACGTTA+GGG + chr1.3:13641637-13641656 None:intergenic 15.0%
!!! AACCATAGTTTTTTATTAAA+TGG + chr1.3:13642309-13642328 None:intergenic 15.0%
!!! AGTCATATGTTTTTATTAAA+TGG + chr1.3:13642358-13642377 None:intergenic 15.0%
!!! TAACATATTTTTTTAACGTT+AGG + chr1.3:13641638-13641657 None:intergenic 15.0%
!! AAAAAATATGTTAACAGATG+AGG - chr1.3:13641645-13641664 MS.gene054071:intron 20.0%
!! AAAAAGGGACAAAAAAATTT+CGG + chr1.3:13641206-13641225 None:intergenic 20.0%
!! ACAAGATATATTGAAAAAAG+GGG - chr1.3:13642043-13642062 MS.gene054071:intron 20.0%
!! CATAACACAAAATAAAAAAG+GGG + chr1.3:13642269-13642288 None:intergenic 20.0%
!! CTATGGTTTATAAAAAACTA+TGG - chr1.3:13642321-13642340 MS.gene054071:CDS 20.0%
!! GACATAACACAAAATAAAAA+AGG + chr1.3:13642271-13642290 None:intergenic 20.0%
!! TAGATGTATGTGTAAAATAA+TGG + chr1.3:13641468-13641487 None:intergenic 20.0%
!! TTGGTAAATTCATTTAATTG+CGG - chr1.3:13641864-13641883 MS.gene054071:intron 20.0%
!!! ATATTTCCTTTTCAGATTAT+TGG + chr1.3:13641906-13641925 None:intergenic 20.0%
!!! ATTTAAGAGTTTGAGATTTA+GGG + chr1.3:13641811-13641830 None:intergenic 20.0%
!!! TCTTTTAGAGAAACTAATAT+TGG - chr1.3:13641845-13641864 MS.gene054071:intron 20.0%
!!! TTTATTTTGTGTTATGTCTT+GGG - chr1.3:13642273-13642292 MS.gene054071:CDS 20.0%
!!! TTTTATTTTGTGTTATGTCT+TGG - chr1.3:13642272-13642291 MS.gene054071:CDS 20.0%
! AAAAGGGACAAAAAAATTTC+GGG + chr1.3:13641205-13641224 None:intergenic 25.0%
! AAACTAACTCTCTTTCTTAA+AGG - chr1.3:13641343-13641362 MS.gene054071:intron 25.0%
! AAATATCCACTATTAGCAAA+AGG - chr1.3:13641409-13641428 MS.gene054071:intron 25.0%
! AAATATTGATGAGGTGAAAT+TGG - chr1.3:13641920-13641939 MS.gene054071:intron 25.0%
! AATATCCACTATTAGCAAAA+GGG - chr1.3:13641410-13641429 MS.gene054071:intron 25.0%
! AGAGAATCTCATTTGATATT+TGG - chr1.3:13642380-13642399 MS.gene054071:CDS 25.0%
! ATGAAAATTCTTATTCATGG+TGG - chr1.3:13642527-13642546 MS.gene054071:CDS 25.0%
! ATGTAGTTAAAAATAGCAGA+TGG + chr1.3:13641236-13641255 None:intergenic 25.0%
! CATTACGTATGATAAATACA+AGG - chr1.3:13641139-13641158 MS.gene054071:intron 25.0%
! CTTGATTCTGAGTTTAATTA+CGG - chr1.3:13640529-13640548 MS.gene054071:intron 25.0%
! CTTGTATTTATCATACGTAA+TGG + chr1.3:13641141-13641160 None:intergenic 25.0%
! GTAAATACTATGTGAAATGA+AGG - chr1.3:13642755-13642774 MS.gene054071:CDS 25.0%
! TAGGAATTTGATACTCAATT+GGG + chr1.3:13641765-13641784 None:intergenic 25.0%
! TGTAGTTAAAAATAGCAGAT+GGG + chr1.3:13641235-13641254 None:intergenic 25.0%
! TTAGGAATTTGATACTCAAT+TGG + chr1.3:13641766-13641785 None:intergenic 25.0%
! TTGATTCTGAGTTTAATTAC+GGG - chr1.3:13640530-13640549 MS.gene054071:intron 25.0%
!! AAAAGCATAAAGATAGCTTT+GGG + chr1.3:13640638-13640657 None:intergenic 25.0%
!! AATTTCGGGTCTTATAATTA+CGG + chr1.3:13641191-13641210 None:intergenic 25.0%
!! GATTTAAGAGTTTGAGATTT+AGG + chr1.3:13641812-13641831 None:intergenic 25.0%
!! TATTTATCATACGTAATGGA+AGG + chr1.3:13641137-13641156 None:intergenic 25.0%
!!! AAAAGCATAAAGATAGCTTT+TGG + chr1.3:13640638-13640657 None:intergenic 25.0%
!!! CCTCAAGATTTTAGAAATTA+CGG - chr1.3:13641095-13641114 MS.gene054071:intron 25.0%
!!! CGTAATTTCTAAAATCTTGA+GGG + chr1.3:13641097-13641116 None:intergenic 25.0%
ACAGATATGAATACCATCTT+GGG - chr1.3:13640683-13640702 MS.gene054071:intron 30.0%
ACTACAACAACTACACAATT+CGG - chr1.3:13640383-13640402 MS.gene054071:intron 30.0%
AGGGATTTGAGGATTAAATT+TGG + chr1.3:13641792-13641811 None:intergenic 30.0%
ATCAAATCGATGATCAGTTT+GGG - chr1.3:13642919-13642938 MS.gene054071:CDS 30.0%
ATGAATTTCCTGGTATGAAA+TGG + chr1.3:13640842-13640861 None:intergenic 30.0%
ATTGTAATCATGGGATTGAA+AGG + chr1.3:13642886-13642905 None:intergenic 30.0%
ATTTCATACCAGGAAATTCA+TGG - chr1.3:13640841-13640860 MS.gene054071:intron 30.0%
CGTAATTAAACTCAGAATCA+AGG + chr1.3:13640531-13640550 None:intergenic 30.0%
CTGAAAAGGAAATATTGATG+AGG - chr1.3:13641911-13641930 MS.gene054071:intron 30.0%
GATAACAAAAATGCACATTC+AGG + chr1.3:13641606-13641625 None:intergenic 30.0%
GATCAACATATCTACATTCA+GGG - chr1.3:13642167-13642186 MS.gene054071:CDS 30.0%
GGGATTTGAGGATTAAATTT+GGG + chr1.3:13641791-13641810 None:intergenic 30.0%
TACAGATATGAATACCATCT+TGG - chr1.3:13640682-13640701 MS.gene054071:intron 30.0%
TATCAAATCGATGATCAGTT+TGG - chr1.3:13642918-13642937 MS.gene054071:CDS 30.0%
TGATCAACATATCTACATTC+AGG - chr1.3:13642166-13642185 MS.gene054071:CDS 30.0%
! AAGCTATCTTTATGCTTTTG+CGG - chr1.3:13640639-13640658 MS.gene054071:intron 30.0%
! ATCCCAGTATTAACTCTTTT+CGG - chr1.3:13642732-13642751 MS.gene054071:CDS 30.0%
! ATCTGTGTCATTGTAATCAT+GGG + chr1.3:13642895-13642914 None:intergenic 30.0%
! CAAAAGCATAAAGATAGCTT+TGG + chr1.3:13640639-13640658 None:intergenic 30.0%
! CAAGAATCTTCTTGTTATGA+TGG - chr1.3:13642018-13642037 MS.gene054071:intron 30.0%
! GAGGATTAAATTTGGGATTT+AGG + chr1.3:13641784-13641803 None:intergenic 30.0%
! TATCTGTGTCATTGTAATCA+TGG + chr1.3:13642896-13642915 None:intergenic 30.0%
! TATTCTCATGATTTTTGCTG+AGG + chr1.3:13642508-13642527 None:intergenic 30.0%
! TTGTATAAGAGGACTTTTAG+TGG + chr1.3:13642479-13642498 None:intergenic 30.0%
! TTTCCTTTTCAGATTATTGG+TGG + chr1.3:13641903-13641922 None:intergenic 30.0%
!! AGCAGATGGGTTTTATAAAA+AGG + chr1.3:13641222-13641241 None:intergenic 30.0%
!! CCGTAATTTCTAAAATCTTG+AGG + chr1.3:13641098-13641117 None:intergenic 30.0%
!! GCAGATGGGTTTTATAAAAA+GGG + chr1.3:13641221-13641240 None:intergenic 30.0%
!! GGAAAAACTACTTTTCAGTT+GGG - chr1.3:13640725-13640744 MS.gene054071:intron 30.0%
!!! ATAAAGATAGCTTTTGGAGT+CGG + chr1.3:13640632-13640651 None:intergenic 30.0%
ACCCGAAAAGAGTTAATACT+GGG + chr1.3:13642737-13642756 None:intergenic 35.0%
ACTACAACAACTACACACTT+CGG - chr1.3:13642784-13642803 MS.gene054071:CDS 35.0%
AGCAAAAGGGTCTTACATAT+AGG - chr1.3:13641423-13641442 MS.gene054071:intron 35.0%
ATCGTAATCATAGGGATCAA+AGG + chr1.3:13640485-13640504 None:intergenic 35.0%
ATGTCAGTCTTCAAAAGATG+CGG - chr1.3:13641009-13641028 MS.gene054071:intron 35.0%
ATTCATGGAATGCTACTCTA+TGG - chr1.3:13640856-13640875 MS.gene054071:intron 35.0%
CCCAAAACAGAGTTAATACT+GGG + chr1.3:13640339-13640358 None:intergenic 35.0%
GAACCACCAATAATCTGAAA+AGG - chr1.3:13641897-13641916 MS.gene054071:intron 35.0%
GATCTGGTTAAAAAATAGCG+AGG + chr1.3:13640451-13640470 None:intergenic 35.0%
GATTATTGCGAGTATCCATT+GGG - chr1.3:13640985-13641004 MS.gene054071:intron 35.0%
GCAAAAGGGTCTTACATATA+GGG - chr1.3:13641424-13641443 MS.gene054071:intron 35.0%
GGATAAAAAATAGCGAGGAA+TGG + chr1.3:13642847-13642866 None:intergenic 35.0%
GGTTAAAAAATAGCGAGGAA+TGG + chr1.3:13640446-13640465 None:intergenic 35.0%
GTGGTAGAATAGAAGTTATG+AGG + chr1.3:13642460-13642479 None:intergenic 35.0%
TAAAAAATAGCGAGGAATGG+AGG + chr1.3:13640443-13640462 None:intergenic 35.0%
TACCCGAAAAGAGTTAATAC+TGG + chr1.3:13642738-13642757 None:intergenic 35.0%
TAGCTGGATAAAAAATAGCG+AGG + chr1.3:13642852-13642871 None:intergenic 35.0%
TGAGGTAGAAGTTGTATAAG+AGG + chr1.3:13642490-13642509 None:intergenic 35.0%
TGATTATTGCGAGTATCCAT+TGG - chr1.3:13640984-13641003 MS.gene054071:intron 35.0%
TTGCAATTTCTCTGCATTCA+GGG - chr1.3:13642196-13642215 MS.gene054071:CDS 35.0%
TTTGCAATTTCTCTGCATTC+AGG - chr1.3:13642195-13642214 MS.gene054071:CDS 35.0%
! CCAGTATTAACTCTGTTTTG+GGG - chr1.3:13640337-13640356 MS.gene054071:intron 35.0%
! CCCAGTATTAACTCTGTTTT+GGG - chr1.3:13640336-13640355 MS.gene054071:intron 35.0%
! GTTTGAGATTTAGGGATTTG+AGG + chr1.3:13641803-13641822 None:intergenic 35.0%
! TAAGACCCTTTTGCTAATAG+TGG + chr1.3:13641418-13641437 None:intergenic 35.0%
! TCCCAGTATTAACTCTGTTT+TGG - chr1.3:13640335-13640354 MS.gene054071:intron 35.0%
! TCCCAGTATTAACTCTTTTC+GGG - chr1.3:13642733-13642752 MS.gene054071:CDS 35.0%
! TTCAGATTATTGGTGGTTCT+CGG + chr1.3:13641896-13641915 None:intergenic 35.0%
!! ATAAAGATAGCTTTGGGAGT+CGG + chr1.3:13643021-13643040 None:intergenic 35.0%
!! CGGAAAAACTACTTTTCAGT+TGG - chr1.3:13640724-13640743 MS.gene054071:intron 35.0%
AAAGGTTGTGAGATTGGATC+TGG + chr1.3:13640467-13640486 None:intergenic 40.0%
AACTTTGCGGCGAGAATAAT+GGG - chr1.3:13640914-13640933 MS.gene054071:intron 40.0%
AAGAAGGTGGACAAGATGTT+TGG + chr1.3:13642614-13642633 None:intergenic 40.0%
ACATAGCAACAAGCTTCACT+TGG + chr1.3:13640768-13640787 None:intergenic 40.0%
ACCAGAACATTCAAGATGTC+CGG + chr1.3:13640965-13640984 None:intergenic 40.0%
ACTAACGAAGTCTACATTCC+GGG + chr1.3:13642128-13642147 None:intergenic 40.0%
AGATCGATCCATTTCATACC+AGG - chr1.3:13640831-13640850 MS.gene054071:intron 40.0%
ATCTGCGTCATCGTAATCAT+AGG + chr1.3:13640494-13640513 None:intergenic 40.0%
ATGAAGAAGGTGGACATGTT+TGG + chr1.3:13640219-13640238 None:intergenic 40.0%
ATGGAAATCCTTCTTCATGG+TGG - chr1.3:13640132-13640151 MS.gene054071:CDS 40.0%
CAGATGGAAATCCTTCTTCA+TGG - chr1.3:13640129-13640148 MS.gene054071:CDS 40.0%
CCCCAAAACAGAGTTAATAC+TGG + chr1.3:13640340-13640359 None:intergenic 40.0%
CCTTTCTACTATGGAAAGGT+CGG - chr1.3:13642422-13642441 MS.gene054071:CDS 40.0%
CGACCTTTCCATAGTAGAAA+GGG + chr1.3:13642424-13642443 None:intergenic 40.0%
CTTTAGTCCCTGAATAGGAA+AGG + chr1.3:13642237-13642256 None:intergenic 40.0%
GAATGATGATCCTGAGTATG+TGG - chr1.3:13640585-13640604 MS.gene054071:intron 40.0%
GACTAACGAAGTCTACATTC+CGG + chr1.3:13642129-13642148 None:intergenic 40.0%
GACTGAAGTAATAAGAGTCG+TGG - chr1.3:13641942-13641961 MS.gene054071:intron 40.0%
GGGTCATTCATAAGTCGAAA+CGG + chr1.3:13642666-13642685 None:intergenic 40.0%
GGGTCATTCTTAAGTCGAAA+CGG + chr1.3:13640268-13640287 None:intergenic 40.0%
GGTCATTCTTAAGTCGAAAC+GGG + chr1.3:13640267-13640286 None:intergenic 40.0%
GTAGCATTCCATGAATTTCC+TGG + chr1.3:13640852-13640871 None:intergenic 40.0%
TCCGGGACTAAATTGACTAA+CGG + chr1.3:13642111-13642130 None:intergenic 40.0%
TCCGTTAGTCAATTTAGTCC+CGG - chr1.3:13642107-13642126 MS.gene054071:intron 40.0%
TCTATGGATTTGAGCTATCG+TGG - chr1.3:13640872-13640891 MS.gene054071:intron 40.0%
TCTCCCTTTCTACTATGGAA+AGG - chr1.3:13642418-13642437 MS.gene054071:CDS 40.0%
TCTGCGTCATCGTAATCATA+GGG + chr1.3:13640493-13640512 None:intergenic 40.0%
TCTTCTCTGACACTGACATT+AGG + chr1.3:13640805-13640824 None:intergenic 40.0%
TGGTATGAAATGGATCGATC+TGG + chr1.3:13640832-13640851 None:intergenic 40.0%
TTGAAGACTGACATTCCCAA+TGG + chr1.3:13641003-13641022 None:intergenic 40.0%
TTGCAGGATAACTCGTACTT+CGG + chr1.3:13642705-13642724 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr1.3:13642242-13642261 None:intergenic 40.0%
! AGTCGTGGAAGACAATTTTC+AGG - chr1.3:13641957-13641976 MS.gene054071:intron 40.0%
! TCGGGTCTTATAATTACGGA+CGG + chr1.3:13641187-13641206 None:intergenic 40.0%
! TGCAAGTTGAATTACACCAC+CGG - chr1.3:13640937-13640956 MS.gene054071:intron 40.0%
!!! TACTGGGATGTTGTTTTTGC+AGG + chr1.3:13642721-13642740 None:intergenic 40.0%
AAAGGCTGTGAGATTGTAGC+TGG + chr1.3:13642868-13642887 None:intergenic 45.0%
AAGAATGACCCAACAAGCTG+TGG - chr1.3:13640277-13640296 MS.gene054071:CDS 45.0%
ACATGTCCACCTTCTTCATG+CGG - chr1.3:13640220-13640239 MS.gene054071:CDS 45.0%
ACATTCAAGATGTCCGGTAC+CGG + chr1.3:13640959-13640978 None:intergenic 45.0%
ACCGGACATCTTGAATGTTC+TGG - chr1.3:13640961-13640980 MS.gene054071:intron 45.0%
ACTAACGGAGTCTGCAATCT+GGG + chr1.3:13642096-13642115 None:intergenic 45.0%
AGTTGATCCCGGAATTCAAG+AGG - chr1.3:13642809-13642828 MS.gene054071:CDS 45.0%
AGTTGATCCCGGAATTGAAG+AGG - chr1.3:13640408-13640427 MS.gene054071:intron 45.0%
ATATTCCCGCATGAAGAAGG+TGG + chr1.3:13642627-13642646 None:intergenic 45.0%
CAATCACCCTCTTCAATTCC+GGG + chr1.3:13640418-13640437 None:intergenic 45.0%
CAGTTACCCTCTTGAATTCC+GGG + chr1.3:13642819-13642838 None:intergenic 45.0%
CCGACCTTTCCATAGTAGAA+AGG + chr1.3:13642425-13642444 None:intergenic 45.0%
GAACTTTGCGGCGAGAATAA+TGG - chr1.3:13640913-13640932 MS.gene054071:intron 45.0%
GACCACTCCTTTCCTATTCA+GGG - chr1.3:13642227-13642246 MS.gene054071:CDS 45.0%
GCAATCACCCTCTTCAATTC+CGG + chr1.3:13640419-13640438 None:intergenic 45.0%
GCAGTTACCCTCTTGAATTC+CGG + chr1.3:13642820-13642839 None:intergenic 45.0%
GGATCTGTATCCACATACTC+AGG + chr1.3:13642987-13643006 None:intergenic 45.0%
GGGATCAAAGGTTGTGAGAT+TGG + chr1.3:13640473-13640492 None:intergenic 45.0%
GGTCCTTGTAGAGAACTTTG+CGG - chr1.3:13640901-13640920 MS.gene054071:intron 45.0%
GGTCTTACATATAGGGACAG+AGG - chr1.3:13641431-13641450 MS.gene054071:intron 45.0%
GTACGTCTCCCTTTCTACTA+TGG - chr1.3:13642413-13642432 MS.gene054071:CDS 45.0%
GTGATATTCCCGCATGAAGA+AGG + chr1.3:13642630-13642649 None:intergenic 45.0%
GTTGATCCCGGAATTCAAGA+GGG - chr1.3:13642810-13642829 MS.gene054071:CDS 45.0%
GTTGATCCCGGAATTGAAGA+GGG - chr1.3:13640409-13640428 MS.gene054071:intron 45.0%
TAGTGACACCTGATGCATCT+TGG + chr1.3:13641690-13641709 None:intergenic 45.0%
TCGCAGGATAACTCGTACTT+CGG + chr1.3:13640307-13640326 None:intergenic 45.0%
TCTTGTCCACCTTCTTCATG+CGG - chr1.3:13642618-13642637 MS.gene054071:CDS 45.0%
TGAATACCATCTTGGGTACG+AGG - chr1.3:13640690-13640709 MS.gene054071:intron 45.0%
TGACCACTCCTTTCCTATTC+AGG - chr1.3:13642226-13642245 MS.gene054071:CDS 45.0%
TTGAATTACACCACCGGTAC+CGG - chr1.3:13640943-13640962 MS.gene054071:intron 45.0%
TTGTTCTGCCAAGATGCATC+AGG - chr1.3:13641679-13641698 MS.gene054071:intron 45.0%
TTTGAGCTATCGTGGATGAG+TGG - chr1.3:13640880-13640899 MS.gene054071:intron 45.0%
! ACAATTCGGCTAGTTGATCC+CGG - chr1.3:13640397-13640416 MS.gene054071:intron 45.0%
! GGTCTTATAATTACGGACGG+AGG + chr1.3:13641184-13641203 None:intergenic 45.0%
!!! TACTGGGATGTTGTTTTCGC+AGG + chr1.3:13640323-13640342 None:intergenic 45.0%
!! AAAAAAATGTATAATAAATA+GGG + chr1.3:13641289-13641308 None:intergenic 5.0%
AAGACTCCTCGTACCCAAGA+TGG + chr1.3:13640699-13640718 None:intergenic 50.0%
ATGAATGACCCAGCAAGCTG+TGG - chr1.3:13642675-13642694 MS.gene054071:CDS 50.0%
ATGTTCCCGCATGAAGAAGG+TGG + chr1.3:13640229-13640248 None:intergenic 50.0%
CACAGCAACCACCATGAAGA+AGG + chr1.3:13640143-13640162 None:intergenic 50.0%
CACGCTGTCATAAAGGTCTC+TGG - chr1.3:13641548-13641567 MS.gene054071:intron 50.0%
CAGAGACCTTTATGACAGCG+TGG + chr1.3:13641550-13641569 None:intergenic 50.0%
CATGTCCACCTTCTTCATGC+GGG - chr1.3:13640221-13640240 MS.gene054071:CDS 50.0%
CTAACGGAGTCTGCAATCTG+GGG + chr1.3:13642095-13642114 None:intergenic 50.0%
CTTGTCCACCTTCTTCATGC+GGG - chr1.3:13642619-13642638 MS.gene054071:CDS 50.0%
GACTAACGGAGTCTGCAATC+TGG + chr1.3:13642097-13642116 None:intergenic 50.0%
GGAGCTGTATCCACATACTC+AGG + chr1.3:13640598-13640617 None:intergenic 50.0%
GGTACGAGGAGTCTTACTCT+CGG - chr1.3:13640704-13640723 MS.gene054071:intron 50.0%
GTCCCTGAATAGGAAAGGAG+TGG + chr1.3:13642232-13642251 None:intergenic 50.0%
GTGATGTTCCCGCATGAAGA+AGG + chr1.3:13640232-13640251 None:intergenic 50.0%
TCGCCGCAAAGTTCTCTACA+AGG + chr1.3:13640907-13640926 None:intergenic 50.0%
TCTGCACCACGCTGTCATAA+AGG - chr1.3:13641541-13641560 MS.gene054071:intron 50.0%
TGCGGCAGACTTCTTTGTGA+GGG - chr1.3:13640657-13640676 MS.gene054071:intron 50.0%
TTCGGATCACCACAGCTTGT+TGG + chr1.3:13640289-13640308 None:intergenic 50.0%
TTGCGGCAGACTTCTTTGTG+AGG - chr1.3:13640656-13640675 MS.gene054071:intron 50.0%
! ACACTTCGGCTAGTTGATCC+CGG - chr1.3:13642798-13642817 MS.gene054071:CDS 50.0%
! TCGGATCACCACAGCTTGTT+GGG + chr1.3:13640288-13640307 None:intergenic 50.0%
!! TTGGAGTCGGAGTTGATGCA+GGG + chr1.3:13640619-13640638 None:intergenic 50.0%
!! TTTGGAGTCGGAGTTGATGC+AGG + chr1.3:13640620-13640639 None:intergenic 50.0%
TTCGGATCACCACAGCTTGC+TGG + chr1.3:13642687-13642706 None:intergenic 55.0%
! TCGGATCACCACAGCTTGCT+GGG + chr1.3:13642686-13642705 None:intergenic 55.0%
! TTCAAGATGTCCGGTACCGG+TGG + chr1.3:13640956-13640975 None:intergenic 55.0%
!! TGGGAGTCGGAGTTGATGCA+GGG + chr1.3:13643008-13643027 None:intergenic 55.0%
!! TTGGGAGTCGGAGTTGATGC+AGG + chr1.3:13643009-13643028 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 13640124 13643061 13640124 ID=MS.gene054071
chr1.3 mRNA 13640124 13643061 13640124 ID=MS.gene054071.t1;Parent=MS.gene054071
chr1.3 exon 13642155 13643061 13642155 ID=MS.gene054071.t1.exon1;Parent=MS.gene054071.t1
chr1.3 CDS 13642155 13643061 13642155 ID=cds.MS.gene054071.t1;Parent=MS.gene054071.t1
chr1.3 exon 13640431 13640533 13640431 ID=MS.gene054071.t1.exon2;Parent=MS.gene054071.t1
chr1.3 CDS 13640431 13640533 13640431 ID=cds.MS.gene054071.t1;Parent=MS.gene054071.t1
chr1.3 exon 13640124 13640316 13640124 ID=MS.gene054071.t1.exon3;Parent=MS.gene054071.t1
chr1.3 CDS 13640124 13640316 13640124 ID=cds.MS.gene054071.t1;Parent=MS.gene054071.t1
Gene Sequence

>MS.gene054071

ATGAGCAGATGGAAATCCTTCTTCATGGTGGTTGCTGTGTTACTATTGCATCATCATCATCAAACATGTGATGCAATTACTAATACAAATAACCAAACATGTCCACCTTCTTCATGCGGGAACATCACAAACATAACACACCCGTTTCGACTTAAGAATGACCCAACAAGCTGTGGTGATCCGAAGTACGAGTTATCCTGCGAAAACAACATCCCAGTATTAACTCTGTTTTGGGGTAAATACTATGTGAAGTCAATCAACTACAACAACTACACAATTCGGCTAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCCTCCATTCCTCGCTATTTTTTAACCAGATCCAATCTCACAACCTTTGATCCCTATGATTACGATGACGCAGATCGATATCAAATAATCCTTGATTCTGAGTTTAATTACGGGAACATAATATACTTGAAGTGTAGCAAACAAGTGAATGATGATCCTGAGTATGTGGATACAGCTCCCTGCATCAACTCCGACTCCAAAAGCTATCTTTATGCTTTTGCGGCAGACTTCTTTGTGAGGGACTACAGATATGAATACCATCTTGGGTACGAGGAGTCTTACTCTCGGAAAAACTACTTTTCAGTTGGGAGATTAAAAGATTATTGCCAAGTGAAGCTTGTTGCTATGTCATCTTCAGATTTTCCTAATGTCAGTGTCAGAGAAGATGTACCAGATCGATCCATTTCATACCAGGAAATTCATGGAATGCTACTCTATGGATTTGAGCTATCGTGGATGAGTGGTCCTTGTAGAGAACTTTGCGGCGAGAATAATGGGTGCAAGTTGAATTACACCACCGGTACCGGACATCTTGAATGTTCTGGTGATTATTGCGAGTATCCATTGGGAATGTCAGTCTTCAAAAGATGCGGTAAGAAATACTGTTTCTTTTCAATTTTAGAAATTACGTAAGAATAAAAAATTGGATTTATTACCCTCAAGATTTTAGAAATTACGGATGTATGCGAGTATATCCTTCCATTACGTATGATAAATACAAGGATTTAATTACTTACTACTACCTCCGTCCGTAATTATAAGACCCGAAATTTTTTTGTCCCTTTTTATAAAACCCATCTGCTATTTTTAACTACATTAAATATTATTTCTTAATTTACATACATGCCCCTATTTATTATACATTTTTTTCTTCAATTAGCAATAAATAGTATGCTGAAAACATAAACTAACTCTCTTTCTTAAAGGATAAATTTGTAAAAACAATAGTGTTTACAAACAACTTTAATATAAATATCCACTATTAGCAAAAGGGTCTTACATATAGGGACAGAGGTAGTATATCTACCATTATTTTACACATACATCTAATAATGTGTTATCGCAATTAACGAATGAGTAAATGATCACATTAGTCTCTGACTCTGCACCACGCTGTCATAAAGGTCTCTGGTCGCTTGACTCAAGATTAAATACAAATTAGTTCCTGAATGTGCATTTTTGTTATCAGTTTAGTCCCTAACGTTAAAAAAATATGTTAACAGATGAGGTGACAAATGTTTTGTTCTGCCAAGATGCATCAGGTGTCACTAAAATAAAAGTAGAAAATGGTTACTTTGATTCATGAACTGAAAATCAATATCTCCCAATTGAGTATCAAATTCCTAAATCCCAAATTTAATCCTCAAATCCCTAAATCTCAAACTCTTAAATCTCATCTAATTTTCTCTTTTAGAGAAACTAATATTGGTAAATTCATTTAATTGCGGATACATCCGAGAACCACCAATAATCTGAAAAGGAAATATTGATGAGGTGAAATTGGACTGAAGTAATAAGAGTCGTGGAAGACAATTTTCAGGATCACGTGCTCTTAATACTTGCGATGCGTAGTTAATTTCAAGAATCTTCTTGTTATGATGGTTACAAGATATATTGAAAAAAGGGGAATGTAGACTCTATTAGTCAATTTAGCCCCAGATTGCAGACTCCGTTAGTCAATTTAGTCCCGGAATGTAGACTTCGTTAGTCACTTTAGTCGCTGAAATTGATCAACATATCTACATTCAGGGACTCTTTTGCAATTTCTCTGCATTCAGGGACTAAAGTGACCACTCCTTTCCTATTCAGGGACTAAAGTGACTAATTCCCCTTTTTTATTTTGTGTTATGTCTTGGGTGAGAATAATCCATTTAATAAAAAACTATGGTTTATAAAAAACTATGGTTTGAGTACATCCATTTAATAAAAACATATGACTGTAGAGAATCTCATTTGATATTTGGAGATAAATTTGTACGTCTCCCTTTCTACTATGGAAAGGTCGGCTAAATAGAGAGCCTCATAACTTCTATTCTACCACTAAAAGTCCTCTTATACAACTTCTACCTCAGCAAAAATCATGAGAATATGAAAATTCTTATTCATGGTGGTTGCTGTGCTACTATTGCATCATCATCATCAAACATGTGATGCAATTACTAATACAAATAACCAAACATCTTGTCCACCTTCTTCATGCGGGAATATCACAGACATAAAACATCCGTTTCGACTTATGAATGACCCAGCAAGCTGTGGTGATCCGAAGTACGAGTTATCCTGCAAAAACAACATCCCAGTATTAACTCTTTTCGGGTAAATACTATGTGAAATGAAGGCAATCAACTACAACAACTACACACTTCGGCTAGTTGATCCCGGAATTCAAGAGGGTAACTGCTCATCCATTCCTCGCTATTTTTTATCCAGCTACAATCTCACAGCCTTTCAATCCCATGATTACAATGACACAGATACATATCAAATCGATGATCAGTTTGGGTACATAATATACTTGAAGTGTAGCAAAGTAGTGAATGATGATCCTGAGTATGTGGATACAGATCCCTGCATCAACTCCGACTCCCAAAGCTATCTTTATGCTTTTGCTAGAAACTCTTAA

Protein sequence

>MS.gene054071.t1

MSRWKSFFMVVAVLLLHHHHQTCDAITNTNNQTCPPSSCGNITNITHPFRLKNDPTSCGDPKYELSCENNIPVLTLFWGKYYVKSINYNNYTIRLVDPGIEEGDCSSIPRYFLTRSNLTTFDPYDYDDADRYQIILDSEFNYGNIIYLKCSKQVNDDPEYVDTAPCINSDSKSYLYAFAADFFVRDYRYEYHLGYEESYSRKNYFSVGRLKDYCQVKLVAMSSSDFPNVSVREDVPDRSISYQEIHGMLLYGFELSWMSGPCRELCGENNGCKLNYTTGTGHLECSGDYCEYPLGMSVFKRCDIKHPFRLMNDPASCGDPKYELSCKNNIPVLTLFGYNLTAFQSHDYNDTDTYQIDDQFGYIIYLKCSKVVNDDPEYVDTDPCINSDSQSYLYAFARNS