AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37044.t1 MTR_8g073730 56.923 65 27 1 46 110 86 149 1.59e-14 72.8
MS.gene37044.t1 MTR_8g073730 48.611 72 27 2 151 213 86 156 7.08e-13 68.2
MS.gene37044.t1 MTR_8g073730 61.538 52 19 1 2 53 99 149 2.37e-12 66.6
MS.gene37044.t1 MTR_5g047480 51.948 77 26 3 151 218 87 161 2.82e-13 69.3
MS.gene37044.t1 MTR_5g047480 53.125 64 29 1 46 109 87 149 1.12e-12 67.4
MS.gene37044.t1 MTR_5g047480 62.000 50 18 1 3 52 101 149 2.91e-12 66.2
MS.gene37044.t1 MTR_5g047530 44.660 103 46 4 46 145 87 181 6.78e-13 68.2
MS.gene37044.t1 MTR_5g047530 46.753 77 30 3 151 218 87 161 2.90e-12 66.2
MS.gene37044.t1 MTR_5g047530 62.500 48 17 1 2 49 100 146 4.34e-12 65.9
MS.gene37044.t1 MTR_8g012190 46.835 79 31 3 145 213 79 156 2.60e-12 66.2
MS.gene37044.t1 MTR_8g012190 60.417 48 18 1 2 49 99 145 3.84e-11 62.8
MS.gene37044.t1 MTR_8g012190 46.835 79 31 3 145 213 73 150 2.72e-12 66.2
MS.gene37044.t1 MTR_8g012190 60.417 48 18 1 2 49 93 139 4.10e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTACGCAGACAGATGATTT+TGG 0.204269 8.2:+80171518 MS.gene37044:CDS
CGTACGCAGACAGATGATTT+TGG 0.204269 8.2:+80171662 MS.gene37044:CDS
TGTAAGCAGACAGATGATTT+TGG 0.261431 8.2:+80171374 MS.gene37044:CDS
AAGTCTGTATGATAGGGATA+TGG 0.293282 8.2:+80172046 MS.gene37044:intron
GTCCAAGTTGGAAGAACTTA+TGG 0.334811 8.2:+80171620 MS.gene37044:CDS
GTCCAAGTTGGAATAACTTA+TGG 0.335217 8.2:+80171305 MS.gene37044:CDS
TGGGTCGACATTGTAAAATA+TGG 0.353591 8.2:-80171171 None:intergenic
CCGTAAGCAGAAGGGTGCTT+TGG 0.357199 8.2:+80171202 MS.gene37044:CDS
TACGGAAAGGCATAACCTTC+TGG 0.362244 8.2:-80171499 None:intergenic
TACGGAAAGGCATAACCTTC+TGG 0.362244 8.2:-80171643 None:intergenic
AAAATACAGGCATAACCTTC+TGG 0.371110 8.2:-80171328 None:intergenic
ATATGGGGAATGGGTGGCTC+AGG 0.375735 8.2:+80172063 MS.gene37044:CDS
GTCCAAGTTGGAAGAACTTA+TGG 0.379422 8.2:+80171476 MS.gene37044:CDS
CGTAAGCAGAAGGGTGCTTT+GGG 0.393232 8.2:+80171203 MS.gene37044:CDS
CCAAAGCACCCTTCTGCTTA+CGG 0.402450 8.2:-80171202 None:intergenic
GGCCATAAGTTCTTCCAACT+TGG 0.403555 8.2:-80171478 None:intergenic
GGCCATAAGTTCTTCCAACT+TGG 0.403555 8.2:-80171622 None:intergenic
AGTCTGTATGATAGGGATAT+GGG 0.440125 8.2:+80172047 MS.gene37044:intron
TTCTGCTTACGGACATGTGA+TGG 0.448247 8.2:-80171191 None:intergenic
AGTGAGTGCGGTCTTCCACT+TGG 0.449733 8.2:-80171447 None:intergenic
AAGTTTCAAATCTGTCCGGC+TGG 0.454085 8.2:+80171759 MS.gene37044:CDS
GATTTGATTGTAGATAGCTT+TGG 0.461391 8.2:-80172100 None:intergenic
GGCCATAAGTTATTCCAACT+TGG 0.480468 8.2:-80171307 None:intergenic
GTGAGTGCGGTCTTCCACTT+GGG 0.493143 8.2:-80171446 None:intergenic
AGTGAGTGCGCTCTTCCACT+TGG 0.502191 8.2:-80171276 None:intergenic
AGTGAGTGCGCTCTTCCACT+TGG 0.502191 8.2:-80171591 None:intergenic
AGTGAGTGCGCTCTTCCACT+TGG 0.502191 8.2:-80171735 None:intergenic
CTCACTGAAGTTGTCCAAGT+TGG 0.503299 8.2:+80171293 MS.gene37044:CDS
CTCACTGAAGTTGTCCAAGT+TGG 0.515670 8.2:+80171608 MS.gene37044:CDS
GGGGAAACATCGTAAAATAC+AGG 0.518764 8.2:-80171341 None:intergenic
CTCACTGAAGCTGTCCAAGT+TGG 0.522909 8.2:+80171464 MS.gene37044:CDS
GGGTCGACATTGTAAAATAT+GGG 0.525787 8.2:-80171170 None:intergenic
GGGATCTCAACAGTATCATC+AGG 0.525790 8.2:+80171780 MS.gene37044:CDS
GTCTGCTTACAGACACCTGA+TGG 0.534830 8.2:-80171362 None:intergenic
ACTGAAGTTTCAAATCTGTC+CGG 0.540375 8.2:+80171755 MS.gene37044:CDS
TTCTTCCCTCAAATTTACGA+TGG 0.544934 8.2:-80172122 None:intergenic
TCTGCTTACGGACATGTGAT+GGG 0.547678 8.2:-80171190 None:intergenic
ATGATAGGGATATGGGGAAT+GGG 0.550105 8.2:+80172054 MS.gene37044:intron
TATGATAGGGATATGGGGAA+TGG 0.550950 8.2:+80172053 MS.gene37044:intron
CAAAATCATCTGTCTGCGTA+CGG 0.551341 8.2:-80171517 None:intergenic
CAAAATCATCTGTCTGCGTA+CGG 0.551341 8.2:-80171661 None:intergenic
ATCACATGTCCGTAAGCAGA+AGG 0.551571 8.2:+80171193 MS.gene37044:CDS
TGGAATAACTTATGGCCAGA+AGG 0.559648 8.2:+80171313 MS.gene37044:CDS
TCTGCTTACAGACACCTGAT+GGG 0.582321 8.2:-80171361 None:intergenic
TGGAAGAACTTATGGCCAGA+AGG 0.586569 8.2:+80171484 MS.gene37044:CDS
TGGAAGAACTTATGGCCAGA+AGG 0.586569 8.2:+80171628 MS.gene37044:CDS
ATGATCAACTGTTGCCCAAG+TGG 0.587345 8.2:+80171432 MS.gene37044:CDS
AGTTTCAAATCTGTCCGGCT+GGG 0.595118 8.2:+80171760 MS.gene37044:CDS
TATGGGGAATGGGTGGCTCA+GGG 0.597390 8.2:+80172064 MS.gene37044:CDS
GTCTGTATGATAGGGATATG+GGG 0.598276 8.2:+80172048 MS.gene37044:intron
ATGATCAACTGTTGTCCAAG+TGG 0.601480 8.2:+80171261 MS.gene37044:CDS
ATGATCAACTGTTGTCCAAG+TGG 0.601480 8.2:+80171576 MS.gene37044:CDS
TCATCTGTCTGCGTACGGAA+AGG 0.601502 8.2:-80171512 None:intergenic
TCATCTGTCTGCGTACGGAA+AGG 0.601502 8.2:-80171656 None:intergenic
ATGATCAACTGTTGTCCAAG+TGG 0.616409 8.2:+80171720 MS.gene37044:CDS
GATACTGTTGAGATCCCAGC+CGG 0.617186 8.2:-80171774 None:intergenic
ATAGGGATATGGGGAATGGG+TGG 0.623728 8.2:+80172057 MS.gene37044:intron
ATTGTAGATAGCTTTGGCCG+TGG 0.624712 8.2:-80172094 None:intergenic
TTGGACAGCTTCAGTGAGTG+CGG 0.639677 8.2:-80171459 None:intergenic
TCACATGTCCGTAAGCAGAA+GGG 0.641934 8.2:+80171194 MS.gene37044:CDS
CTGCTTACAGACACCTGATG+GGG 0.669606 8.2:-80171360 None:intergenic
TGGCTCAGGGAAAACAACCA+CGG 0.711278 8.2:+80172077 MS.gene37044:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACAATTACAATTTAAAA+AGG - chr8.2:80170588-80170607 None:intergenic 10.0%
!!! ACATTTAAATATATTTTCTT+TGG - chr8.2:80170137-80170156 None:intergenic 10.0%
!!! CATTTAAATATATTTTCTTT+GGG - chr8.2:80170136-80170155 None:intergenic 10.0%
!! ACTTTCATAACAAAAAAATT+CGG + chr8.2:80170483-80170502 MS.gene37044:intron 15.0%
!! TAACGATAAGGAAAATAATA+TGG - chr8.2:80170693-80170712 None:intergenic 20.0%
!!! ATTTAAGATGACACATTTAA+AGG - chr8.2:80170166-80170185 None:intergenic 20.0%
! AGTAATGAAGAAAATTGTTG+AGG + chr8.2:80171915-80171934 MS.gene37044:intron 25.0%
! TTTATCCAGTAAAAAATGCA+TGG + chr8.2:80170659-80170678 MS.gene37044:intron 25.0%
!! CTAACAATTTTGTATGGTAA+GGG - chr8.2:80170717-80170736 None:intergenic 25.0%
!!! ACTTGTTCATAAGTTTTAGA+GGG + chr8.2:80170912-80170931 MS.gene37044:intron 25.0%
!!! ATATTGCAGATTTTGAGAAT+AGG + chr8.2:80170311-80170330 MS.gene37044:intron 25.0%
AAGTTAGACATTAAATGCAG+GGG + chr8.2:80170551-80170570 MS.gene37044:intron 30.0%
CAAGTTAGACATTAAATGCA+GGG + chr8.2:80170550-80170569 MS.gene37044:intron 30.0%
CTGCATTTAATGTCTAACTT+GGG - chr8.2:80170551-80170570 None:intergenic 30.0%
GATTTGATTGTAGATAGCTT+TGG - chr8.2:80172103-80172122 None:intergenic 30.0%
GTAACTGTTATTATTACCCA+AGG + chr8.2:80171881-80171900 MS.gene37044:intron 30.0%
TAACAAAAAAATTCGGCCTA+TGG + chr8.2:80170490-80170509 MS.gene37044:intron 30.0%
TGCATTTAATGTCTAACTTG+GGG - chr8.2:80170550-80170569 None:intergenic 30.0%
! GCTAACAATTTTGTATGGTA+AGG - chr8.2:80170718-80170737 None:intergenic 30.0%
! GTAGGGCAGTTTTTAAATTT+TGG + chr8.2:80170437-80170456 MS.gene37044:intron 30.0%
! TATTTTCTTTGGGCATTATG+TGG - chr8.2:80170126-80170145 None:intergenic 30.0%
! TTTTGTTGCATTGAGTTCAA+AGG - chr8.2:80171234-80171253 None:intergenic 30.0%
!! GACTTGTTCATAAGTTTTAG+AGG + chr8.2:80170911-80170930 MS.gene37044:intron 30.0%
!!! CTTGTTCATAAGTTTTAGAG+GGG + chr8.2:80170913-80170932 MS.gene37044:intron 30.0%
AAAATACAGGCATAACCTTC+TGG - chr8.2:80171331-80171350 None:intergenic 35.0%
AACATCGACAAAATGAGTGA+TGG + chr8.2:80170617-80170636 MS.gene37044:intron 35.0%
AACTAGAGAGAGCAATAGAA+GGG + chr8.2:80171036-80171055 MS.gene37044:intron 35.0%
AAGTCTGTATGATAGGGATA+TGG + chr8.2:80172046-80172065 MS.gene37044:intron 35.0%
ACTGAAGTTTCAAATCTGTC+CGG + chr8.2:80171755-80171774 MS.gene37044:CDS 35.0%
ACTTGGGGATTGTTTCAAAT+AGG - chr8.2:80170535-80170554 None:intergenic 35.0%
AGTCTGTATGATAGGGATAT+GGG + chr8.2:80172047-80172066 MS.gene37044:intron 35.0%
AGTTAGACATTAAATGCAGG+GGG + chr8.2:80170552-80170571 MS.gene37044:intron 35.0%
ATGAACAAGTCATAGATCCA+TGG - chr8.2:80170902-80170921 None:intergenic 35.0%
ATGATATGAGAAGCTTGGAA+AGG + chr8.2:80170995-80171014 MS.gene37044:intron 35.0%
ATTACTTCTGCTTCATTCCT+TGG - chr8.2:80171901-80171920 None:intergenic 35.0%
CAAGCAAAGTCTGTATGATA+GGG + chr8.2:80172040-80172059 MS.gene37044:intron 35.0%
CCAAGTTAGACATTAAATGC+AGG + chr8.2:80170549-80170568 MS.gene37044:intron 35.0%
CCTGCATTTAATGTCTAACT+TGG - chr8.2:80170552-80170571 None:intergenic 35.0%
GGGTCATCTAGTTAAAAGTA+GGG + chr8.2:80170420-80170439 MS.gene37044:intron 35.0%
GGGTCGACATTGTAAAATAT+GGG - chr8.2:80171173-80171192 None:intergenic 35.0%
TATGGTAAGGGATAACGATA+AGG - chr8.2:80170705-80170724 None:intergenic 35.0%
TCAAGCAAAGTCTGTATGAT+AGG + chr8.2:80172039-80172058 MS.gene37044:intron 35.0%
TCCATCATTGTTGTCCATTA+CGG + chr8.2:80171957-80171976 MS.gene37044:intron 35.0%
TGATATGAGAAGCTTGGAAA+GGG + chr8.2:80170996-80171015 MS.gene37044:intron 35.0%
TGGAGTCTGAGAAACAAAAT+GGG - chr8.2:80170743-80170762 None:intergenic 35.0%
TGGGTCGACATTGTAAAATA+TGG - chr8.2:80171174-80171193 None:intergenic 35.0%
TTACTTCTGCTTCATTCCTT+GGG - chr8.2:80171900-80171919 None:intergenic 35.0%
! GTCCAAGTTGGAATAACTTA+TGG + chr8.2:80171305-80171324 MS.gene37044:CDS 35.0%
! TCTTGATGATATGAGAAGCT+TGG + chr8.2:80170990-80171009 MS.gene37044:intron 35.0%
! TGTAAGCAGACAGATGATTT+TGG + chr8.2:80171374-80171393 MS.gene37044:CDS 35.0%
! TTTTGTTGCATTGAGTTCGA+AGG - chr8.2:80171405-80171424 None:intergenic 35.0%
!! ACTCAGTAATTTGTTGCACA+CGG - chr8.2:80172005-80172024 None:intergenic 35.0%
!!! AGTTGCCATGCATTTTTTAC+TGG - chr8.2:80170667-80170686 None:intergenic 35.0%
AAGAAGGACTTGTGACATAG+GGG + chr8.2:80170370-80170389 MS.gene37044:intron 40.0%
AATGCTGCACTGAAAAACTG+AGG + chr8.2:80170955-80170974 MS.gene37044:intron 40.0%
AGTCTGAGAAACAAAATGGG+TGG - chr8.2:80170740-80170759 None:intergenic 40.0%
ATAGATCCATGGATGATCAG+AGG - chr8.2:80170891-80170910 None:intergenic 40.0%
ATGATAGGGATATGGGGAAT+GGG + chr8.2:80172054-80172073 MS.gene37044:intron 40.0%
ATGATCAACTGTTGTCCAAG+TGG + chr8.2:80171261-80171280 MS.gene37044:CDS 40.0%
CAAAATCATCTGTCTGCGTA+CGG - chr8.2:80171520-80171539 None:intergenic 40.0%
CAAGAAGGACTTGTGACATA+GGG + chr8.2:80170369-80170388 MS.gene37044:intron 40.0%
CAAGTCAAAGTTGTGACATG+GGG + chr8.2:80170400-80170419 MS.gene37044:intron 40.0%
GAACTAGAGAGAGCAATAGA+AGG + chr8.2:80171035-80171054 MS.gene37044:intron 40.0%
GCAAGTCAAAGTTGTGACAT+GGG + chr8.2:80170399-80170418 MS.gene37044:intron 40.0%
GGCCATAAGTTATTCCAACT+TGG - chr8.2:80171310-80171329 None:intergenic 40.0%
GGGGAAACATCGTAAAATAC+AGG - chr8.2:80171344-80171363 None:intergenic 40.0%
GGGGTCATCTAGTTAAAAGT+AGG + chr8.2:80170419-80170438 MS.gene37044:intron 40.0%
GTCTGTATGATAGGGATATG+GGG + chr8.2:80172048-80172067 MS.gene37044:intron 40.0%
GTGGAGTCTGAGAAACAAAA+TGG - chr8.2:80170744-80170763 None:intergenic 40.0%
TATGATAGGGATATGGGGAA+TGG + chr8.2:80172053-80172072 MS.gene37044:intron 40.0%
TGGAATAACTTATGGCCAGA+AGG + chr8.2:80171313-80171332 MS.gene37044:CDS 40.0%
TTTGAGAATAGGTCGCAAGA+GGG + chr8.2:80170322-80170341 MS.gene37044:intron 40.0%
! GGGTGGCTAACAATTTTGTA+TGG - chr8.2:80170723-80170742 None:intergenic 40.0%
! GTCCAAGTTGGAAGAACTTA+TGG + chr8.2:80171476-80171495 MS.gene37044:CDS 40.0%
! TCTATTGCTCTCTCTAGTTC+TGG - chr8.2:80171035-80171054 None:intergenic 40.0%
! TTTGTTTCTCAGACTCCACT+TGG + chr8.2:80170745-80170764 MS.gene37044:intron 40.0%
! TTTTACGATGTTTCCCCATC+AGG + chr8.2:80171347-80171366 MS.gene37044:CDS 40.0%
!! CTCAGTAATTTGTTGCACAC+GGG - chr8.2:80172004-80172023 None:intergenic 40.0%
!! TTTTGAGAATAGGTCGCAAG+AGG + chr8.2:80170321-80170340 MS.gene37044:intron 40.0%
!!! GTTCATAAGTTTTAGAGGGG+AGG + chr8.2:80170916-80170935 MS.gene37044:intron 40.0%
AAGAGGGACTTGTGACATAG+GGG + chr8.2:80170338-80170357 MS.gene37044:intron 45.0%
AAGTTTCAAATCTGTCCGGC+TGG + chr8.2:80171759-80171778 MS.gene37044:CDS 45.0%
ACACGGGATTCCAATCCAAT+CGG - chr8.2:80171988-80172007 None:intergenic 45.0%
AGTTTCAAATCTGTCCGGCT+GGG + chr8.2:80171760-80171779 MS.gene37044:CDS 45.0%
ATAGGATTCTCCACCAATGC+AGG - chr8.2:80170517-80170536 None:intergenic 45.0%
ATAGGGGATATGTCGCAAGA+AGG + chr8.2:80170354-80170373 MS.gene37044:intron 45.0%
ATCACATGTCCGTAAGCAGA+AGG + chr8.2:80171193-80171212 MS.gene37044:CDS 45.0%
ATGATCAACTGTTGCCCAAG+TGG + chr8.2:80171432-80171451 MS.gene37044:CDS 45.0%
CAAGAGGGACTTGTGACATA+GGG + chr8.2:80170337-80170356 MS.gene37044:intron 45.0%
CAGCTAGATCGTGCATAGTT+GGG - chr8.2:80171089-80171108 None:intergenic 45.0%
CGCAAGTCAAAGTTGTGACA+TGG + chr8.2:80170398-80170417 MS.gene37044:intron 45.0%
CTCACTGAAGTTGTCCAAGT+TGG + chr8.2:80171293-80171312 MS.gene37044:CDS 45.0%
GCAAGAAGGACTTGTGACAT+AGG + chr8.2:80170368-80170387 MS.gene37044:intron 45.0%
GGCCATAAGTTCTTCCAACT+TGG - chr8.2:80171481-80171500 None:intergenic 45.0%
GGGATCTCAACAGTATCATC+AGG + chr8.2:80171780-80171799 MS.gene37044:CDS 45.0%
TAACCACCTGCCCATAAGTT+TGG - chr8.2:80171148-80171167 None:intergenic 45.0%
TACGGCATATCCGATTGGAT+TGG + chr8.2:80171975-80171994 MS.gene37044:intron 45.0%
TAGGATTCTCCACCAATGCA+GGG - chr8.2:80170516-80170535 None:intergenic 45.0%
TCACATGTCCGTAAGCAGAA+GGG + chr8.2:80171194-80171213 MS.gene37044:CDS 45.0%
TCCAATCGGATATGCCGTAA+TGG - chr8.2:80171974-80171993 None:intergenic 45.0%
TCCATTACGGCATATCCGAT+TGG + chr8.2:80171970-80171989 MS.gene37044:intron 45.0%
TCTGCTTACAGACACCTGAT+GGG - chr8.2:80171364-80171383 None:intergenic 45.0%
TCTGCTTACGGACATGTGAT+GGG - chr8.2:80171193-80171212 None:intergenic 45.0%
TGCATTGCCGCCAAACTTAT+GGG + chr8.2:80171135-80171154 MS.gene37044:intron 45.0%
TGGAAGAACTTATGGCCAGA+AGG + chr8.2:80171484-80171503 MS.gene37044:CDS 45.0%
TTCTGCTTACGGACATGTGA+TGG - chr8.2:80171194-80171213 None:intergenic 45.0%
! CGTACGCAGACAGATGATTT+TGG + chr8.2:80171518-80171537 MS.gene37044:CDS 45.0%
! TACGGAAAGGCATAACCTTC+TGG - chr8.2:80171502-80171521 None:intergenic 45.0%
! TTCAGTGCAGCATTGAGATG+CGG - chr8.2:80170949-80170968 None:intergenic 45.0%
!! ATTGTAGATAGCTTTGGCCG+TGG - chr8.2:80172097-80172116 None:intergenic 45.0%
!! GCCGTAATGGACAACAATGA+TGG - chr8.2:80171961-80171980 None:intergenic 45.0%
ACTTGGTCAACGTGAGTCGT+CGG + chr8.2:80170762-80170781 MS.gene37044:intron 50.0%
ATAGGGATATGGGGAATGGG+TGG + chr8.2:80172057-80172076 MS.gene37044:intron 50.0%
CATAAGTTTGGCGGCAATGC+AGG - chr8.2:80171136-80171155 None:intergenic 50.0%
CATGTCACAAGTCGCACTTG+TGG + chr8.2:80170270-80170289 MS.gene37044:intron 50.0%
CCAACTATGCACGATCTAGC+TGG + chr8.2:80171087-80171106 MS.gene37044:intron 50.0%
CCAGCTAGATCGTGCATAGT+TGG - chr8.2:80171090-80171109 None:intergenic 50.0%
CTCACTGAAGCTGTCCAAGT+TGG + chr8.2:80171464-80171483 MS.gene37044:CDS 50.0%
CTGCATTGCCGCCAAACTTA+TGG + chr8.2:80171134-80171153 MS.gene37044:intron 50.0%
CTGCTTACAGACACCTGATG+GGG - chr8.2:80171363-80171382 None:intergenic 50.0%
CTTCCTCCTCTGATCATCCA+TGG + chr8.2:80170882-80170901 MS.gene37044:intron 50.0%
CTTGGAAAGGGAGAAGAGCT+AGG + chr8.2:80171008-80171027 MS.gene37044:intron 50.0%
GATACTGTTGAGATCCCAGC+CGG - chr8.2:80171777-80171796 None:intergenic 50.0%
GATCCATGGATGATCAGAGG+AGG - chr8.2:80170888-80170907 None:intergenic 50.0%
GCAAGAGGGACTTGTGACAT+AGG + chr8.2:80170336-80170355 MS.gene37044:intron 50.0%
GTCTGCTTACAGACACCTGA+TGG - chr8.2:80171365-80171384 None:intergenic 50.0%
TCATCTGTCTGCGTACGGAA+AGG - chr8.2:80171515-80171534 None:intergenic 50.0%
TGGCTCAGGGAAAACAACCA+CGG + chr8.2:80172077-80172096 MS.gene37044:CDS 50.0%
TTGGACAGCTTCAGTGAGTG+CGG - chr8.2:80171462-80171481 None:intergenic 50.0%
! CCAAAGCACCCTTCTGCTTA+CGG - chr8.2:80171205-80171224 None:intergenic 50.0%
!! CGTAAGCAGAAGGGTGCTTT+GGG + chr8.2:80171203-80171222 MS.gene37044:CDS 50.0%
AGTGAGTGCGCTCTTCCACT+TGG - chr8.2:80171279-80171298 None:intergenic 55.0%
AGTGAGTGCGGTCTTCCACT+TGG - chr8.2:80171450-80171469 None:intergenic 55.0%
ATATGGGGAATGGGTGGCTC+AGG + chr8.2:80172063-80172082 MS.gene37044:CDS 55.0%
CCACCTGCCCATAAGTTTGG+CGG - chr8.2:80171145-80171164 None:intergenic 55.0%
CTTGGTCAACGTGAGTCGTC+GGG + chr8.2:80170763-80170782 MS.gene37044:intron 55.0%
GACGACTCACGTTGACCAAG+TGG - chr8.2:80170763-80170782 None:intergenic 55.0%
GTGAGTGCGGTCTTCCACTT+GGG - chr8.2:80171449-80171468 None:intergenic 55.0%
TATGGGGAATGGGTGGCTCA+GGG + chr8.2:80172064-80172083 MS.gene37044:CDS 55.0%
TTGCCGCCAAACTTATGGGC+AGG + chr8.2:80171139-80171158 MS.gene37044:intron 55.0%
!! CCGTAAGCAGAAGGGTGCTT+TGG + chr8.2:80171202-80171221 MS.gene37044:CDS 55.0%
CCGCCAAACTTATGGGCAGG+TGG + chr8.2:80171142-80171161 MS.gene37044:intron 60.0%
CTCCACCAATGCAGGGCCAT+AGG - chr8.2:80170509-80170528 None:intergenic 60.0%
TTCGGCCTATGGCCCTGCAT+TGG + chr8.2:80170501-80170520 MS.gene37044:intron 60.0%
GGCCTATGGCCCTGCATTGG+TGG + chr8.2:80170504-80170523 MS.gene37044:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 80170107 80172130 80170107 ID=MS.gene37044
chr8.2 mRNA 80170107 80172130 80170107 ID=MS.gene37044.t1;Parent=MS.gene37044
chr8.2 exon 80170107 80170109 80170107 ID=MS.gene37044.t1.exon1;Parent=MS.gene37044.t1
chr8.2 CDS 80170107 80170109 80170107 ID=cds.MS.gene37044.t1;Parent=MS.gene37044.t1
chr8.2 exon 80171161 80171801 80171161 ID=MS.gene37044.t1.exon2;Parent=MS.gene37044.t1
chr8.2 CDS 80171161 80171801 80171161 ID=cds.MS.gene37044.t1;Parent=MS.gene37044.t1
chr8.2 exon 80172061 80172130 80172061 ID=MS.gene37044.t1.exon3;Parent=MS.gene37044.t1
chr8.2 CDS 80172061 80172130 80172061 ID=cds.MS.gene37044.t1;Parent=MS.gene37044.t1
Gene Sequence

>MS.gene37044

ATGGTGTGGAAAAGGACCACATAATGCCCAAAGAAAATATATTTAAATGTATTGTACCTTTAAATGTGTCATCTTAAATAATAAATATTTATTTCAATTATTTTTTTTAAAATTTTTAAAACTAATTCTATTAAAATAATAAAATTAAAAACGAAAAAAAAAGCATGTCACAAGTCGCACTTGTGGCATATAATAAAGACAAAGATATTGCAGATTTTGAGAATAGGTCGCAAGAGGGACTTGTGACATAGGGGATATGTCGCAAGAAGGACTTGTGACATAGGGGTATGTCGCAAGTCAAAGTTGTGACATGGGGTCATCTAGTTAAAAGTAGGGCAGTTTTTAAATTTTGGTTTCAACTATTGCAGATTTAAAAACTTTCATAACAAAAAAATTCGGCCTATGGCCCTGCATTGGTGGAGAATCCTATTTGAAACAATCCCCAAGTTAGACATTAAATGCAGGGGGTTATATTCATCCTTTTTAAATTGTAATTGTAAAATTGACAAGAACATCGACAAAATGAGTGATGGTGATTAATATCTTTGACAATTTATCCAGTAAAAAATGCATGGCAACTCTTCCATATTATTTTCCTTATCGTTATCCCTTACCATACAAAATTGTTAGCCACCCATTTTGTTTCTCAGACTCCACTTGGTCAACGTGAGTCGTCGGGATCAGATTACATCAAAACTATCTCATTATTAATACTATTTCTCTTCGTTCTGCATTTGTGTTTGTCTTCGATTGTAATTCATCAAAACAATAATGTCTTCCTCCTCTGATCATCCATGGATCTATGACTTGTTCATAAGTTTTAGAGGGGAGGATACTCGCCGCATCTCAATGCTGCACTGAAAAACTGAGGAGTCAACACTTTTCTTGATGATATGAGAAGCTTGGAAAGGGAGAAGAGCTAGGACCAGAACTAGAGAGAGCAATAGAAGGGTCTCATATATCTATTGTTGTTCTCTCACCCAACTATGCACGATCTAGCTGGTGTCTTAACGAACTTGTACACATCCTGCATTGCCGCCAAACTTATGGGCAGGTGGTTATACCCATATTTTACAATGTCGACCCATCACATGTCCGTAAGCAGAAGGGTGCTTTGGGAAAAGCCTTTGAACTCAATGCAACAAAAAAAGACGATGATCAACTGTTGTCCAAGTGGAAGAGCGCACTCACTGAAGTTGTCCAAGTTGGAATAACTTATGGCCAGAAGGTTATGCCTGTATTTTACGATGTTTCCCCATCAGGTGTCTGTAAGCAGACAGATGATTTTGGAAAAGCCTTCGAACTCAATGCAACAAAAAAAGACGATGATCAACTGTTGCCCAAGTGGAAGACCGCACTCACTGAAGCTGTCCAAGTTGGAAGAACTTATGGCCAGAAGGTTATGCCTTTCCGTACGCAGACAGATGATTTTGGAAAAGCCTTTGAACTCAATGCAACAAAAAAAGACGATGATCAACTGTTGTCCAAGTGGAAGAGCGCACTCACTGAAGTTGTCCAAGTTGGAAGAACTTATGGCCAGAAGGTTATGCCTTTCCGTACGCAGACAGATGATTTTGGAAAAGCCTTTGAACTCAATGCAACAAAAAAAGATGATGATCAACTGTTGTCCAAGTGGAAGAGCGCACTCACTGAAGTTTCAAATCTGTCCGGCTGGGATCTCAACAGTATCATCAGGTAATCAATACTTACATTTGATAGTAAAGCGTAATTTCTTTTGAGATTATGTCATGATTGATGCTCATTCTTTGTCTTTGTAACTGTTATTATTACCCAAGGAATGAAGCAGAAGTAATGAAGAAAATTGTTGAGGACACTTTGACAAAACTAGATCCATCATTGTTGTCCATTACGGCATATCCGATTGGATTGGAATCCCGTGTGCAACAAATTACTGAGTTTATTGATGATCAATCAAGCAAAGTCTGTATGATAGGGATATGGGGAATGGGTGGCTCAGGGAAAACAACCACGGCCAAAGCTATCTACAATCAAATCCATCGTAA
Protein sequence

>MS.gene37044.t1

MVVIPIFYNVDPSHVRKQKGALGKAFELNATKKDDDQLLSKWKSALTEVVQVGITYGQKVMPVFYDVSPSGVCKQTDDFGKAFELNATKKDDDQLLPKWKTALTEAVQVGRTYGQKVMPFRTQTDDFGKAFELNATKKDDDQLLSKWKSALTEVVQVGRTYGQKVMPFRTQTDDFGKAFELNATKKDDDQLLSKWKSALTEVSNLSGWDLNSIIRDMGNGWLRENNHGQSYLQSNPS