AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05416.t1 MTR_6g083240 61.728 162 41 3 16 156 1 162 2.01e-58 181
MS.gene05416.t1 MTR_4g114870 61.268 142 53 2 16 155 1 142 9.70e-53 172
MS.gene05416.t1 MTR_4g114870 55.000 100 45 0 41 140 190 289 4.74e-33 121
MS.gene05416.t1 MTR_0334s0010 46.154 117 61 2 23 139 9 123 3.77e-27 102
MS.gene05416.t1 MTR_5g006040 36.434 129 80 1 27 155 11 137 1.18e-25 97.8
MS.gene05416.t1 MTR_1g104800 30.811 185 103 4 16 179 1 181 1.75e-24 95.1
MS.gene05416.t1 MTR_4g067200 35.833 120 75 1 23 140 9 128 2.31e-23 91.7
MS.gene05416.t1 MTR_4g066110 35.833 120 75 1 23 140 9 128 2.31e-23 91.7
MS.gene05416.t1 MTR_3g099580 40.336 119 66 3 21 139 5 118 1.81e-22 89.7
MS.gene05416.t1 MTR_2g043730 39.167 120 63 4 23 140 12 123 4.40e-22 87.0
MS.gene05416.t1 MTR_8g007020 34.759 187 90 7 16 179 1 178 6.54e-22 88.2
MS.gene05416.t1 MTR_3g099570 34.074 135 84 3 21 155 5 134 4.32e-20 83.6
MS.gene05416.t1 MTR_8g007035 39.837 123 67 3 23 143 5 122 1.59e-19 82.4
MS.gene05416.t1 MTR_2g088990 42.708 96 50 2 62 153 42 136 1.84e-19 82.8
MS.gene05416.t1 MTR_3g099980 37.288 118 69 2 23 139 7 120 3.50e-19 82.0
MS.gene05416.t1 MTR_3g099680 36.667 120 71 2 21 139 5 120 3.95e-19 81.6
MS.gene05416.t1 MTR_8g088830 35.294 102 60 1 39 140 25 120 1.72e-18 77.8
MS.gene05416.t1 MTR_1g105130 35.294 119 69 3 23 140 9 120 1.87e-18 78.6
MS.gene05416.t1 MTR_1g105120 35.294 119 69 3 23 140 9 120 1.87e-18 78.6
MS.gene05416.t1 MTR_8g089110 37.288 118 64 3 23 140 12 119 2.48e-18 77.0
MS.gene05416.t1 MTR_7g086160 37.302 126 72 4 16 139 1 121 1.47e-17 76.3
MS.gene05416.t1 MTR_7g086090 36.066 122 73 2 20 140 3 120 1.59e-17 77.8
MS.gene05416.t1 MTR_7g086140 36.000 125 74 3 16 139 1 120 2.17e-17 75.9
MS.gene05416.t1 MTR_7g086190 36.000 125 74 3 16 139 1 120 2.17e-17 75.9
MS.gene05416.t1 MTR_7g086100 37.302 126 72 3 16 140 1 120 3.07e-17 77.0
MS.gene05416.t1 MTR_7g086280 35.897 117 70 2 24 139 7 119 6.40e-17 75.1
MS.gene05416.t1 MTR_1g090420 31.690 142 89 4 25 162 8 145 9.15e-17 75.5
MS.gene05416.t1 MTR_7g086220 32.759 116 74 1 20 135 3 114 1.18e-16 73.9
MS.gene05416.t1 MTR_4g114830 36.585 123 72 5 39 156 25 146 1.98e-16 73.2
MS.gene05416.t1 MTR_3g089005 33.051 118 72 2 23 140 14 124 2.26e-16 72.4
MS.gene05416.t1 MTR_3g089035 35.644 101 58 2 39 139 30 123 3.31e-16 71.6
MS.gene05416.t1 MTR_7g086230 35.043 117 71 2 24 139 7 119 4.26e-16 72.8
MS.gene05416.t1 MTR_1g090190 35.484 124 75 2 39 162 20 138 1.11e-15 71.6
MS.gene05416.t1 MTR_8g099220 30.952 126 84 2 16 139 1 125 6.55e-15 68.6
MS.gene05416.t1 MTR_2g101300 33.607 122 71 3 39 152 24 143 6.94e-15 69.7
MS.gene05416.t1 MTR_1g014120 31.618 136 87 3 26 155 8 143 8.67e-15 69.3
MS.gene05416.t1 MTR_1g077790 34.343 99 64 1 42 139 29 127 1.21e-14 69.3
MS.gene05416.t1 MTR_6g080660 31.034 116 75 2 24 139 10 120 2.16e-14 68.9
MS.gene05416.t1 MTR_3g099540 33.043 115 72 2 37 151 22 131 3.41e-14 66.6
MS.gene05416.t1 MTR_6g022170 35.354 99 61 2 42 139 34 130 6.32e-14 66.6
MS.gene05416.t1 MTR_8g086360 28.042 189 101 4 23 180 7 191 8.91e-14 67.0
MS.gene05416.t1 MTR_1g112700 29.457 129 86 2 23 150 14 138 2.69e-13 65.5
MS.gene05416.t1 MTR_4g081100 29.565 115 78 1 25 139 18 129 3.95e-13 65.9
MS.gene05416.t1 MTR_2g043790 33.654 104 62 2 37 140 2 98 4.25e-13 62.8
MS.gene05416.t1 MTR_3g105930 28.671 143 100 2 39 179 24 166 4.30e-13 64.7
MS.gene05416.t1 MTR_4g111640 31.111 135 88 3 27 158 17 149 4.95e-13 64.7
MS.gene05416.t1 MTR_4g077787 28.000 150 99 3 16 158 1 148 5.94e-12 62.0
MS.gene05416.t1 MTR_4g078410 32.432 111 73 1 39 149 22 130 8.31e-12 61.6
MS.gene05416.t1 MTR_8g463180 32.331 133 82 3 23 155 10 134 2.05e-11 62.0
MS.gene05416.t1 MTR_2g079030 31.852 135 80 2 28 152 11 143 3.51e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05416.t1 AT2G32300 38.514 148 87 1 9 156 23 166 7.43e-29 108
MS.gene05416.t1 AT2G32300 41.135 141 78 2 16 156 1 136 6.73e-28 105
MS.gene05416.t1 AT2G31050 41.176 136 76 2 21 155 7 139 3.61e-25 97.1
MS.gene05416.t1 AT5G20230 42.982 114 64 1 40 153 23 135 1.10e-24 95.9
MS.gene05416.t1 AT2G25060 41.353 133 73 3 24 155 16 144 1.42e-22 90.1
MS.gene05416.t1 AT5G26330 37.600 125 76 1 23 147 5 127 5.36e-22 88.6
MS.gene05416.t1 AT3G20570 36.220 127 77 2 16 139 1 126 5.93e-22 89.0
MS.gene05416.t1 AT2G26720 37.500 144 83 5 16 155 1 141 6.00e-22 89.0
MS.gene05416.t1 AT3G17675 34.746 118 73 1 23 140 13 126 1.46e-19 80.9
MS.gene05416.t1 AT3G60270 38.889 108 61 2 39 146 23 125 1.04e-17 77.4
MS.gene05416.t1 AT4G31840 35.294 136 85 3 23 155 7 142 7.60e-17 74.7
MS.gene05416.t1 AT1G64640 29.333 150 103 3 15 163 5 152 2.42e-16 73.9
MS.gene05416.t1 AT1G79800 34.146 123 77 3 23 144 16 135 2.76e-16 73.6
MS.gene05416.t1 AT2G02850 34.454 119 68 3 24 142 21 129 9.53e-15 68.2
MS.gene05416.t1 AT1G45063 31.818 132 83 3 41 171 148 273 1.47e-14 71.2
MS.gene05416.t1 AT1G45063 31.897 116 75 3 25 139 12 124 2.08e-11 62.0
MS.gene05416.t1 AT1G72230 40.000 80 47 1 60 139 37 115 2.56e-14 68.2
MS.gene05416.t1 AT5G07475 37.255 102 59 2 39 140 27 123 3.87e-14 68.2
MS.gene05416.t1 AT1G45063 34.821 112 66 3 42 152 149 254 4.69e-14 68.9
MS.gene05416.t1 AT1G45063 31.897 116 75 3 25 139 12 124 1.72e-11 62.0
MS.gene05416.t1 AT5G25090 37.374 99 62 0 45 143 30 128 7.41e-14 67.0
MS.gene05416.t1 AT5G53870 36.000 125 75 2 16 137 1 123 8.14e-14 68.9
MS.gene05416.t1 AT5G53870 36.000 125 75 2 16 137 1 123 1.05e-13 68.9
MS.gene05416.t1 AT4G30590 31.092 119 80 2 23 139 8 126 1.33e-13 66.6
MS.gene05416.t1 AT4G28365 34.091 132 81 4 23 154 11 136 5.63e-13 65.1
MS.gene05416.t1 AT5G14345 31.193 109 72 2 48 155 22 128 1.73e-12 62.4
MS.gene05416.t1 AT3G60280 37.624 101 58 2 39 139 21 116 1.99e-12 63.9
MS.gene05416.t1 AT2G44790 34.513 113 63 4 33 143 23 126 2.59e-12 63.2
MS.gene05416.t1 AT1G22480 41.558 77 44 1 67 143 40 115 6.82e-12 61.6
MS.gene05416.t1 AT2G23990 28.571 126 88 2 16 139 1 126 1.06e-11 61.6
MS.gene05416.t1 AT4G27520 31.624 117 78 1 27 143 16 130 2.18e-11 62.0

Find 44 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCATATGTACCTTTCC+TGG 0.302641 6.1:-73252518 MS.gene05416:CDS
TTGCTACGGATCCATGAAAA+AGG 0.306137 6.1:+73252872 None:intergenic
TTTCCTGGTCACTGTTCTGC+TGG 0.401958 6.1:-73252503 MS.gene05416:CDS
GATCTGAAGTCTATGCCAAC+TGG 0.423549 6.1:-73252801 MS.gene05416:CDS
TTCAGATCCCTTGGCTGGGA+TGG 0.429411 6.1:+73252816 None:intergenic
AATTCACCTGCCCCTGCTAC+TGG 0.444008 6.1:-73252434 MS.gene05416:intron
GAAATATTGTTTCCCTTCTC+CGG 0.446272 6.1:+73252535 None:intergenic
GGCTGGGATGGTCCAGCCCA+TGG 0.455255 6.1:+73252828 None:intergenic
CTTCACCGTGGGTGATGCCA+TGG 0.459509 6.1:-73252845 MS.gene05416:CDS
GGCATAGACTTCAGATCCCT+TGG 0.461369 6.1:+73252807 None:intergenic
CCGTGGGTGATGCCATGGGC+TGG 0.490470 6.1:-73252840 MS.gene05416:CDS
TAGACTTCAGATCCCTTGGC+TGG 0.492106 6.1:+73252811 None:intergenic
GTGAAGTACGTACCAGTAGC+AGG 0.494120 6.1:+73252422 None:intergenic
ACCATTCATGTTGCTTGCCA+TGG 0.500799 6.1:+73252924 None:intergenic
CCGGTGAGAGTCACCGTCGC+TGG 0.506722 6.1:+73252554 None:intergenic
ACGGTGACTCTCACCGGAGA+AGG 0.507997 6.1:-73252548 MS.gene05416:CDS
TTGTTCTTACAAGTAATAAG+TGG 0.513067 6.1:+73252958 None:intergenic
CCAGCGACGGTGACTCTCAC+CGG 0.514054 6.1:-73252554 MS.gene05416:CDS
TTCACTGTAGGTGACAATCT+TGG 0.533049 6.1:-73252763 MS.gene05416:intron
GGGCTGGACCATCCCAGCCA+AGG 0.537028 6.1:-73252824 MS.gene05416:CDS
TTCAAAACACGATGTGGCAA+AGG 0.539358 6.1:-73252639 MS.gene05416:CDS
TCAGCTTTCGATAGTTGCAA+TGG 0.542896 6.1:-73252608 MS.gene05416:CDS
CATGGCATCACCCACGGTGA+AGG 0.545312 6.1:+73252846 None:intergenic
GGCTGGACCATCCCAGCCAA+GGG 0.550523 6.1:-73252823 MS.gene05416:CDS
ACCATGGCAAGCAACATGAA+TGG 0.563353 6.1:-73252925 MS.gene05416:CDS
ATCTGAAGTCTATGCCAACT+GGG 0.572115 6.1:-73252800 MS.gene05416:CDS
AGCAGAACAGTGACCAGGAA+AGG 0.575490 6.1:+73252505 None:intergenic
CCAGCCCATGGCATCACCCA+CGG 0.584446 6.1:+73252840 None:intergenic
CGGTGACTCTCACCGGAGAA+GGG 0.584705 6.1:-73252547 MS.gene05416:CDS
TACGTACCAGTAGCAGGGGC+AGG 0.587156 6.1:+73252428 None:intergenic
TTCACCGTGGGTGATGCCAT+GGG 0.589453 6.1:-73252844 MS.gene05416:CDS
TCTTCGTCTATGAATGTCTG+TGG 0.589974 6.1:-73252060 MS.gene05416:CDS
AGACTTCAGATCCCTTGGCT+GGG 0.596308 6.1:+73252812 None:intergenic
TGCTAATTCAAAACACGATG+TGG 0.601535 6.1:-73252645 MS.gene05416:CDS
TATACTAAAACCTTCACTGT+AGG 0.602481 6.1:-73252775 MS.gene05416:CDS
CAATGGAACAAACGCACTTG+CGG 0.604289 6.1:-73252591 MS.gene05416:CDS
CTTCGTCTATGAATGTCTGT+GGG 0.606275 6.1:-73252059 MS.gene05416:CDS
TGACCAGCAGAACAGTGACC+AGG 0.608525 6.1:+73252500 None:intergenic
AAGATTGTCACCTACAGTGA+AGG 0.614101 6.1:+73252765 None:intergenic
ACATTCATAGACGAAGATTG+TGG 0.618358 6.1:+73252066 None:intergenic
TGAAGTACGTACCAGTAGCA+GGG 0.622032 6.1:+73252423 None:intergenic
CATAACAAACACTCCAGCGA+CGG 0.643148 6.1:-73252567 MS.gene05416:CDS
GAACAATCACTACACAACCA+TGG 0.676415 6.1:-73252941 MS.gene05416:CDS
GAAGTACGTACCAGTAGCAG+GGG 0.685678 6.1:+73252424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATTCAAACAATTAAA+AGG - chr6.1:73252667-73252686 MS.gene05416:intron 15.0%
!! AAACATTCAAACAATTAAAA+GGG - chr6.1:73252668-73252687 MS.gene05416:intron 15.0%
!!! AAATTTCCAACTTTTTTTAT+AGG - chr6.1:73252961-73252980 MS.gene05416:CDS 15.0%
!!! AATTTCCAACTTTTTTTATA+GGG - chr6.1:73252962-73252981 MS.gene05416:CDS 15.0%
!! AATCTAAATCTAAATCTGTA+GGG + chr6.1:73252739-73252758 None:intergenic 20.0%
!! TAATCTAAATCTAAATCTGT+AGG + chr6.1:73252740-73252759 None:intergenic 20.0%
!!! TTCTAGAATTACTCTATAAA+TGG + chr6.1:73252818-73252837 None:intergenic 20.0%
! TTAAGCCCTATAAAAAAAGT+TGG + chr6.1:73252970-73252989 None:intergenic 25.0%
! TTGTTCTTACAAGTAATAAG+TGG + chr6.1:73252042-73252061 None:intergenic 25.0%
TACACTTACTCAAATTAGCT+AGG + chr6.1:73252770-73252789 None:intergenic 30.0%
TATACTAAAACCTTCACTGT+AGG - chr6.1:73252222-73252241 MS.gene05416:intron 30.0%
TATTTCATATGTACCTTTCC+TGG - chr6.1:73252479-73252498 MS.gene05416:CDS 30.0%
TGGAGTAGTAATTAACACAT+CGG + chr6.1:73252798-73252817 None:intergenic 30.0%
!! ACGTTTTATTAATTCGTCCA+GGG - chr6.1:73252692-73252711 MS.gene05416:intron 30.0%
ACATTCATAGACGAAGATTG+TGG + chr6.1:73252934-73252953 None:intergenic 35.0%
ACCCCTGAAAATTAGTAGAA+GGG + chr6.1:73252600-73252619 None:intergenic 35.0%
ACTCAAATTAGCTAGGCTAA+TGG + chr6.1:73252763-73252782 None:intergenic 35.0%
GAAATATTGTTTCCCTTCTC+CGG + chr6.1:73252465-73252484 None:intergenic 35.0%
TGCTAATTCAAAACACGATG+TGG - chr6.1:73252352-73252371 MS.gene05416:intron 35.0%
! ACCCTTCTACTAATTTTCAG+GGG - chr6.1:73252596-73252615 MS.gene05416:CDS 35.0%
! CACCCTTCTACTAATTTTCA+GGG - chr6.1:73252595-73252614 MS.gene05416:CDS 35.0%
! TCACCCTTCTACTAATTTTC+AGG - chr6.1:73252594-73252613 MS.gene05416:CDS 35.0%
! TTTTGATGCCCCTATGAAAA+TGG + chr6.1:73252651-73252670 None:intergenic 35.0%
!! CACGTTTTATTAATTCGTCC+AGG - chr6.1:73252691-73252710 MS.gene05416:intron 35.0%
!! TGTTTTTGCGTTGCTTGTTA+TGG - chr6.1:73252098-73252117 MS.gene05416:CDS 35.0%
AAGATTGTCACCTACAGTGA+AGG + chr6.1:73252235-73252254 None:intergenic 40.0%
CACCCCTGAAAATTAGTAGA+AGG + chr6.1:73252601-73252620 None:intergenic 40.0%
CTTCGTCTATGAATGTCTGT+GGG - chr6.1:73252938-73252957 MS.gene05416:CDS 40.0%
GAACAATCACTACACAACCA+TGG - chr6.1:73252056-73252075 MS.gene05416:CDS 40.0%
TCAGCTTTCGATAGTTGCAA+TGG - chr6.1:73252389-73252408 MS.gene05416:intron 40.0%
TCTTCGTCTATGAATGTCTG+TGG - chr6.1:73252937-73252956 MS.gene05416:CDS 40.0%
TTCAAAACACGATGTGGCAA+AGG - chr6.1:73252358-73252377 MS.gene05416:intron 40.0%
TTCACTGTAGGTGACAATCT+TGG - chr6.1:73252234-73252253 MS.gene05416:intron 40.0%
TTGCTACGGATCCATGAAAA+AGG + chr6.1:73252128-73252147 None:intergenic 40.0%
! AGCCAGAACACCATTTTCAT+AGG - chr6.1:73252638-73252657 MS.gene05416:CDS 40.0%
! AGGGTCAGTCCTAAGATTTT+TGG + chr6.1:73252720-73252739 None:intergenic 40.0%
! ATCTGAAGTCTATGCCAACT+GGG - chr6.1:73252197-73252216 MS.gene05416:intron 40.0%
! CCAGAACACCATTTTCATAG+GGG - chr6.1:73252640-73252659 MS.gene05416:CDS 40.0%
! GCCAGAACACCATTTTCATA+GGG - chr6.1:73252639-73252658 MS.gene05416:CDS 40.0%
! TCCAGGGTACCAAAAATCTT+AGG - chr6.1:73252708-73252727 MS.gene05416:intron 40.0%
!! CTTCTACTAATTTTCAGGGG+TGG - chr6.1:73252599-73252618 MS.gene05416:CDS 40.0%
!! GGTTTTAGTATATGCCCAGT+TGG + chr6.1:73252214-73252233 None:intergenic 40.0%
!!! GTTATGGCTAGCCTTTTTCA+TGG - chr6.1:73252114-73252133 MS.gene05416:CDS 40.0%
!!! TCCTAAGATTTTTGGTACCC+TGG + chr6.1:73252712-73252731 None:intergenic 40.0%
ACCATGGCAAGCAACATGAA+TGG - chr6.1:73252072-73252091 MS.gene05416:CDS 45.0%
CAATGGAACAAACGCACTTG+CGG - chr6.1:73252406-73252425 MS.gene05416:intron 45.0%
CATAACAAACACTCCAGCGA+CGG - chr6.1:73252430-73252449 MS.gene05416:intron 45.0%
CCCCTATGAAAATGGTGTTC+TGG + chr6.1:73252643-73252662 None:intergenic 45.0%
GTAGCAAAAACCTTCACCGT+GGG - chr6.1:73252141-73252160 MS.gene05416:intron 45.0%
TGAAGTACGTACCAGTAGCA+GGG + chr6.1:73252577-73252596 None:intergenic 45.0%
! ACCATTCATGTTGCTTGCCA+TGG + chr6.1:73252076-73252095 None:intergenic 45.0%
! CACGGTGAAGGTTTTTGCTA+CGG + chr6.1:73252142-73252161 None:intergenic 45.0%
! GATCTGAAGTCTATGCCAAC+TGG - chr6.1:73252196-73252215 MS.gene05416:intron 45.0%
AGACTTCAGATCCCTTGGCT+GGG + chr6.1:73252188-73252207 None:intergenic 50.0%
AGCAGAACAGTGACCAGGAA+AGG + chr6.1:73252495-73252514 None:intergenic 50.0%
CGTAGCAAAAACCTTCACCG+TGG - chr6.1:73252140-73252159 MS.gene05416:intron 50.0%
GAAGTACGTACCAGTAGCAG+GGG + chr6.1:73252576-73252595 None:intergenic 50.0%
GGCATAGACTTCAGATCCCT+TGG + chr6.1:73252193-73252212 None:intergenic 50.0%
GTGAAGTACGTACCAGTAGC+AGG + chr6.1:73252578-73252597 None:intergenic 50.0%
TAGACTTCAGATCCCTTGGC+TGG + chr6.1:73252189-73252208 None:intergenic 50.0%
TTTCCTGGTCACTGTTCTGC+TGG - chr6.1:73252494-73252513 MS.gene05416:CDS 50.0%
!! AATTTTCAGGGGTGGTGCTG+AGG - chr6.1:73252607-73252626 MS.gene05416:CDS 50.0%
!! ATTTTCAGGGGTGGTGCTGA+GGG - chr6.1:73252608-73252627 MS.gene05416:CDS 50.0%
AATTCACCTGCCCCTGCTAC+TGG - chr6.1:73252563-73252582 MS.gene05416:CDS 55.0%
TGACCAGCAGAACAGTGACC+AGG + chr6.1:73252500-73252519 None:intergenic 55.0%
TTCACCGTGGGTGATGCCAT+GGG - chr6.1:73252153-73252172 MS.gene05416:intron 55.0%
TTCAGATCCCTTGGCTGGGA+TGG + chr6.1:73252184-73252203 None:intergenic 55.0%
ACGGTGACTCTCACCGGAGA+AGG - chr6.1:73252449-73252468 MS.gene05416:CDS 60.0%
CATGGCATCACCCACGGTGA+AGG + chr6.1:73252154-73252173 None:intergenic 60.0%
CGGTGACTCTCACCGGAGAA+GGG - chr6.1:73252450-73252469 MS.gene05416:CDS 60.0%
CTTCACCGTGGGTGATGCCA+TGG - chr6.1:73252152-73252171 MS.gene05416:intron 60.0%
TACGTACCAGTAGCAGGGGC+AGG + chr6.1:73252572-73252591 None:intergenic 60.0%
CCAGCCCATGGCATCACCCA+CGG + chr6.1:73252160-73252179 None:intergenic 65.0%
CCAGCGACGGTGACTCTCAC+CGG - chr6.1:73252443-73252462 MS.gene05416:CDS 65.0%
GGCTGGACCATCCCAGCCAA+GGG - chr6.1:73252174-73252193 MS.gene05416:intron 65.0%
! TTCAGGGGTGGTGCTGAGGG+TGG - chr6.1:73252611-73252630 MS.gene05416:CDS 65.0%
CCGGTGAGAGTCACCGTCGC+TGG + chr6.1:73252446-73252465 None:intergenic 70.0%
CCGTGGGTGATGCCATGGGC+TGG - chr6.1:73252157-73252176 MS.gene05416:intron 70.0%
GGCTGGGATGGTCCAGCCCA+TGG + chr6.1:73252172-73252191 None:intergenic 70.0%
GGGCTGGACCATCCCAGCCA+AGG - chr6.1:73252173-73252192 MS.gene05416:intron 70.0%
! GGGGTGGTGCTGAGGGTGGA+CGG - chr6.1:73252615-73252634 MS.gene05416:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 73252030 73252989 73252030 ID=MS.gene05416
chr6.1 mRNA 73252030 73252989 73252030 ID=MS.gene05416.t1;Parent=MS.gene05416
chr6.1 exon 73252764 73252989 73252764 ID=MS.gene05416.t1.exon1;Parent=MS.gene05416.t1
chr6.1 CDS 73252764 73252989 73252764 ID=cds.MS.gene05416.t1;Parent=MS.gene05416.t1
chr6.1 exon 73252435 73252677 73252435 ID=MS.gene05416.t1.exon2;Parent=MS.gene05416.t1
chr6.1 CDS 73252435 73252677 73252435 ID=cds.MS.gene05416.t1;Parent=MS.gene05416.t1
chr6.1 exon 73252030 73252142 73252030 ID=MS.gene05416.t1.exon3;Parent=MS.gene05416.t1
chr6.1 CDS 73252030 73252142 73252030 ID=cds.MS.gene05416.t1;Parent=MS.gene05416.t1
Gene Sequence

>MS.gene05416

ATGGCAACTCCACTTATTACTTGTAAGAACAATCACTACACAACCATGGCAAGCAACATGAATGGTCTTGTTTTTGCGTTGCTTGTTATGGCTAGCCTTTTTCATGGATCCGTAGCAAAAACCTTCACCGTGGGTGATGCCATGGGCTGGACCATCCCAGCCAAGGGATCTGAAGTCTATGCCAACTGGGCATATACTAAAACCTTCACTGTAGGTGACAATCTTGGTATGTAAGATATCATGTAAATCTTAGATATAATATTAATGATTATACATCAGATTTTTCAATTAATTTGTTTAATTAACGTACAGTGTTCAACTTTGCTAATTCAAAACACGATGTGGCAAAGGTAACAAAATCAGCTTTCGATAGTTGCAATGGAACAAACGCACTTGCGGTCATAACAAACACTCCAGCGACGGTGACTCTCACCGGAGAAGGGAAACAATATTTCATATGTACCTTTCCTGGTCACTGTTCTGCTGGTCAGAAACTGTCGATTGATTACGTTTCTTTAGCATCAACTGTCACTAATTCACCTGCCCCTGCTACTGGTACGTACTTCACCCTTCTACTAATTTTCAGGGGTGGTGCTGAGGGTGGACGGAGCCAGAACACCATTTTCATAGGGGCATCAAAACATTCAAACAATTAAAAGGGCACGTTTTATTAATTCGTCCAGGGTACCAAAAATCTTAGGACTGACCCTACAGATTTAGATTTAGATTACCATTAGCCTAGCTAATTTGAGTAAGTGTAAGTTACCGATGTGTTAATTACTACTCCATTTATAGAGTAATTCTAGAATGCTCACTAGCAGTATTTACTTTTTTCTTTTTTTTTTAGAGAATGATCACGAGCAGTATTCACTTTATGATTGTATGAAATTCACATTATTATCCACAATCTTCGTCTATGAATGTCTGTGGGAAATTTCCAACTTTTTTTATAGGGCTTAA
Protein sequence

>MS.gene05416.t1

MATPLITCKNNHYTTMASNMNGLVFALLVMASLFHGSVAKTFTVGDAMGWTIPAKGSEVYANWAYTKTFTVGDNLVFNFANSKHDVAKVTKSAFDSCNGTNALAVITNTPATVTLTGEGKQYFICTFPGHCSAGQKLSIDYVSLASTVTNSPAPATENDHEQYSLYDCMKFTLLSTIFVYECLWEISNFFYRA