AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054164

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054164.t1 MTR_6g048050 95.930 344 13 1 1 344 110 452 0.0 582
MS.gene054164.t1 MTR_1g100120 64.431 343 122 0 2 344 105 447 7.72e-145 417
MS.gene054164.t1 MTR_1g100120 61.181 237 92 0 2 238 105 341 4.44e-83 256
MS.gene054164.t1 MTR_0054s0050 64.894 188 7 2 157 344 4 132 1.50e-55 177
MS.gene054164.t1 MTR_7g060910 61.850 173 7 2 160 332 1 114 5.22e-43 148
MS.gene054164.t1 MTR_8g036190 87.719 57 7 0 157 213 4 60 6.80e-27 102
MS.gene054164.t1 MTR_8g036200 45.217 115 16 2 43 157 16 83 3.21e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054164.t1 AT5G24000 65.507 345 118 1 1 344 99 443 1.91e-156 446
MS.gene054164.t1 AT5G52540 64.162 346 121 1 2 344 116 461 2.24e-139 403

Find 70 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATCTTCTTATTGTTCT+TGG 0.155822 6.1:+27950941 MS.gene054164:CDS
CTTCTTATTGTTCTTGGATT+AGG 0.227467 6.1:+27950947 MS.gene054164:CDS
CAGTATGACCAGCAGGTATA+AGG 0.256942 6.1:-27950392 None:intergenic
ACTATTCCATTGCTATTGTT+TGG 0.277840 6.1:+27948521 MS.gene054164:CDS
ATTGCAGTTGCTACTATAAT+TGG 0.291922 6.1:+27948837 MS.gene054164:intron
ACATATTTCACAAAATTATA+CGG 0.304861 6.1:+27950291 MS.gene054164:CDS
GAAAGTTGCAGCAGCTCTAA+TGG 0.324983 6.1:+27948914 MS.gene054164:CDS
GCTGCAACTTTCCAGTTATC+AGG 0.326869 6.1:-27948903 None:intergenic
GCAGTAGCTGTCTGCAAAAC+TGG 0.330976 6.1:-27950234 None:intergenic
GCTTATGAAGTCAGAAAATC+AGG 0.332397 6.1:+27950203 MS.gene054164:CDS
GATCTCTTGGTCCTGATAAC+TGG 0.334655 6.1:+27948892 MS.gene054164:CDS
GCTCTAATGGGTAGCTATAT+TGG 0.344060 6.1:+27948927 MS.gene054164:CDS
TATCTGTGCCGTTTATTTCA+TGG 0.348152 6.1:+27949623 MS.gene054164:CDS
CAACAAGTAGTTCGTTCAAC+TGG 0.349880 6.1:+27948554 MS.gene054164:CDS
GTTGTTCCTGGAATCCTTAC+CGG 0.352710 6.1:+27951079 MS.gene054164:CDS
TTAGCATCAAACGCGAATAT+CGG 0.358725 6.1:+27951004 MS.gene054164:CDS
TGGGAATCTTTAGTTGTTCC+TGG 0.360735 6.1:+27951067 MS.gene054164:CDS
TGAATATACTTGGGGCAGTT+TGG 0.369634 6.1:-27950895 None:intergenic
GTGGCTTTCTTACTTGGGTC+AGG 0.387488 6.1:+27948587 MS.gene054164:CDS
ATACAAGAAGGAACTCTTCC+AGG 0.395127 6.1:+27950315 MS.gene054164:CDS
CAAACCAAGCGCCTCTGAAA+TGG 0.395191 6.1:-27949559 None:intergenic
AAAATGCCGGTAAGGATTCC+AGG 0.407085 6.1:-27951085 None:intergenic
GCCATTCCACAAGCTGTTGT+AGG 0.418638 6.1:-27951031 None:intergenic
GGACTTGCTGCAAGTAATCT+TGG 0.427268 6.1:+27948440 MS.gene054164:CDS
TGCTGGTCATACTGTTGCCT+TGG 0.431355 6.1:+27950401 MS.gene054164:CDS
AGTATGACCAGCAGGTATAA+GGG 0.434629 6.1:-27950391 None:intergenic
TTTCATGGTGTTGTTTGCAT+TGG 0.444162 6.1:+27949638 MS.gene054164:CDS
AAACAACACCATGAAATAAA+CGG 0.456022 6.1:-27949631 None:intergenic
AAGTATATTCATGTTTGCAC+TGG 0.466227 6.1:+27950907 MS.gene054164:CDS
AAAGTTGCAGCAGCTCTAAT+GGG 0.474333 6.1:+27948915 MS.gene054164:CDS
AATAGCAATGGAATAGTAAG+AGG 0.484012 6.1:-27948515 None:intergenic
ACCTGCATATTCAATTGTCT+TGG 0.491981 6.1:+27948481 MS.gene054164:CDS
TGTTGCCTTGGTCTTAATGC+AGG 0.499586 6.1:+27950413 MS.gene054164:CDS
AGTGCAAACATGAATATACT+TGG 0.504219 6.1:-27950905 None:intergenic
ATCCAAGAACAATAAGAAGA+TGG 0.504284 6.1:-27950943 None:intergenic
CCATTCCACAAGCTGTTGTA+GGG 0.506074 6.1:-27951030 None:intergenic
ATAAGGGGAGTAATCAGCTT+TGG 0.509226 6.1:-27950375 None:intergenic
ATAGTACCTATGAGATCTCT+TGG 0.510450 6.1:+27948879 MS.gene054164:CDS
ACGATGATTGCAGTTACTCC+TGG 0.520577 6.1:-27950333 None:intergenic
TGTGGAATGGCTAAGGCTAA+AGG 0.521502 6.1:+27951043 MS.gene054164:CDS
ATTACTCCCCTTATACCTGC+TGG 0.523567 6.1:+27950384 MS.gene054164:CDS
GTGCAAACATGAATATACTT+GGG 0.524524 6.1:-27950904 None:intergenic
GTTGGTGGTGCAGTCTCTGC+GGG 0.532669 6.1:-27949672 None:intergenic
TCCAAGACAATTGAATATGC+AGG 0.534421 6.1:-27948482 None:intergenic
TTTGTGGTCGTTGGAGCTAG+TGG 0.542862 6.1:+27950854 MS.gene054164:CDS
GAATGGCTAAGGCTAAAGGC+TGG 0.544445 6.1:+27951047 MS.gene054164:CDS
CCCTACAACAGCTTGTGGAA+TGG 0.546445 6.1:+27951030 MS.gene054164:CDS
GTTGCCATTTCAGAGGCGCT+TGG 0.549654 6.1:+27949555 MS.gene054164:CDS
GGCGGCCCTACAACAGCTTG+TGG 0.554785 6.1:+27951025 MS.gene054164:CDS
AACAGCTTGTGGAATGGCTA+AGG 0.555634 6.1:+27951036 MS.gene054164:CDS
TCAGGACCAAGAGATCTCAT+AGG 0.565976 6.1:-27948885 None:intergenic
GCTTTAGTGAGCACATTAGT+CGG 0.575951 6.1:+27948419 MS.gene054164:CDS
TTTGCTCCAAACAATAGCAA+TGG 0.576769 6.1:-27948527 None:intergenic
AAGGCAACAGTATGACCAGC+AGG 0.578651 6.1:-27950399 None:intergenic
AATCAGCTTTGGTGCAAGAG+TGG 0.589104 6.1:-27950364 None:intergenic
GTATGACCAGCAGGTATAAG+GGG 0.592928 6.1:-27950390 None:intergenic
GACTAATGTGCTCACTAAAG+CGG 0.595322 6.1:-27948417 None:intergenic
AAATTATACGGTATACAAGA+AGG 0.598924 6.1:+27950303 MS.gene054164:CDS
GAGACTGCACCACCAACCAC+TGG 0.599800 6.1:+27949678 MS.gene054164:CDS
TACTATAATTGGTACTCTAG+TGG 0.601056 6.1:+27948848 MS.gene054164:CDS
TAATTATGTTGCCATTTCAG+AGG 0.603851 6.1:+27949548 MS.gene054164:CDS
TGTTACCTGCATTAAGACCA+AGG 0.606478 6.1:-27950418 None:intergenic
CTAATGGGTAGCTATATTGG+TGG 0.610720 6.1:+27948930 MS.gene054164:CDS
AATGGCTAAGGCTAAAGGCT+GGG 0.614901 6.1:+27951048 MS.gene054164:CDS
AAAATAGTACCAGTGGTTGG+TGG 0.618699 6.1:-27949687 None:intergenic
CTTATGAAGTCAGAAAATCA+GGG 0.647479 6.1:+27950204 MS.gene054164:CDS
TGCAAACATGAATATACTTG+GGG 0.655619 6.1:-27950903 None:intergenic
GCATCAAACGCGAATATCGG+CGG 0.660534 6.1:+27951007 MS.gene054164:CDS
GGTTGGTGGTGCAGTCTCTG+CGG 0.668361 6.1:-27949673 None:intergenic
GAATATGCAGGTGCATCATG+TGG 0.682049 6.1:-27948470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATTGAATAATTTAAT+GGG + chr6.1:27949889-27949908 MS.gene054164:intron 10.0%
!! TATAAGATTGAATAATTTAA+TGG + chr6.1:27949888-27949907 MS.gene054164:intron 10.0%
!! AATAATGAAAGTAATATTTG+AGG + chr6.1:27950590-27950609 MS.gene054164:intron 15.0%
!! ACATATTTCACAAAATTATA+CGG + chr6.1:27950291-27950310 MS.gene054164:CDS 15.0%
!! ATTACTTTCATTATTTAGTT+TGG - chr6.1:27950585-27950604 None:intergenic 15.0%
!! GTAAAATATGTAAATTCTTT+AGG + chr6.1:27950718-27950737 MS.gene054164:intron 15.0%
!! TTCTATTTATCTAAACAAAA+TGG + chr6.1:27948613-27948632 MS.gene054164:intron 15.0%
!!! AGAAGAGTAAAAATTAATTT+TGG - chr6.1:27950649-27950668 None:intergenic 15.0%
!!! ATGAATAGTTTTTTTATTAC+CGG + chr6.1:27949781-27949800 MS.gene054164:intron 15.0%
!! ACTAACAAAAGAGATATTAA+AGG + chr6.1:27950622-27950641 MS.gene054164:intron 20.0%
!! TTACTTCTTGTAAAAATTCA+AGG + chr6.1:27950779-27950798 MS.gene054164:intron 20.0%
!!! AAATTTTAGCTTGATTTAAC+GGG + chr6.1:27950158-27950177 MS.gene054164:intron 20.0%
!!! ATCATTATAGTTCTAAATTG+AGG + chr6.1:27949926-27949945 MS.gene054164:intron 20.0%
!!! GAAATTTTAGCTTGATTTAA+CGG + chr6.1:27950157-27950176 MS.gene054164:intron 20.0%
!!! GTATAATTTTGTGAAATATG+TGG - chr6.1:27950292-27950311 None:intergenic 20.0%
!!! TATTATTTGAAACATGTTGA+TGG + chr6.1:27949458-27949477 MS.gene054164:intron 20.0%
!!! TCATTATAGTTCTAAATTGA+GGG + chr6.1:27949927-27949946 MS.gene054164:intron 20.0%
! AAACAACACCATGAAATAAA+CGG - chr6.1:27949634-27949653 None:intergenic 25.0%
! AAATTATACGGTATACAAGA+AGG + chr6.1:27950303-27950322 MS.gene054164:CDS 25.0%
! AACTATAATGATGATTCCAT+CGG - chr6.1:27949918-27949937 None:intergenic 25.0%
! AATTATAACTGTTATGGCTT+TGG + chr6.1:27950746-27950765 MS.gene054164:intron 25.0%
! ACAAGAAACAGCTTATAAAT+TGG - chr6.1:27949728-27949747 None:intergenic 25.0%
! ACTATTCATTCCAAAAATTC+TGG - chr6.1:27949770-27949789 None:intergenic 25.0%
! ATAGTTGAGCAATTAAGAAT+TGG + chr6.1:27949376-27949395 MS.gene054164:intron 25.0%
! ATGCCATTAAAAATTGCATA+GGG + chr6.1:27949326-27949345 MS.gene054164:intron 25.0%
! GTGTATTCATTATATCAATC+CGG - chr6.1:27949803-27949822 None:intergenic 25.0%
! GTTGACAATTATAACTGTTA+TGG + chr6.1:27950740-27950759 MS.gene054164:intron 25.0%
! TAGTTGAGCAATTAAGAATT+GGG + chr6.1:27949377-27949396 MS.gene054164:intron 25.0%
! TATAGTAAAAATAGTACCAG+TGG - chr6.1:27949697-27949716 None:intergenic 25.0%
! TATTATAGACGTGTAATACA+TGG - chr6.1:27949162-27949181 None:intergenic 25.0%
! TCACATTTCATAACTAATAC+TGG - chr6.1:27949851-27949870 None:intergenic 25.0%
! TGTAAAAATTCAAGGATCAT+GGG + chr6.1:27950787-27950806 MS.gene054164:intron 25.0%
! TTGTAAAAATTCAAGGATCA+TGG + chr6.1:27950786-27950805 MS.gene054164:intron 25.0%
!! AACTAATCAAAGAGCATAAT+CGG + chr6.1:27950557-27950576 MS.gene054164:intron 25.0%
!! ATCTCTTTTGTTAGTCAATT+TGG - chr6.1:27950617-27950636 None:intergenic 25.0%
!! GTTTCAATTGCAACATTTTT+AGG + chr6.1:27951112-27951131 MS.gene054164:CDS 25.0%
!! TAGACTGCAATTTAAAACTA+TGG + chr6.1:27950064-27950083 MS.gene054164:intron 25.0%
!! TGCTCTTTGATTAGTTAATT+TGG - chr6.1:27950553-27950572 None:intergenic 25.0%
!!! ACATTTTTAGGTATTGGTTT+TGG + chr6.1:27951124-27951143 MS.gene054164:CDS 25.0%
!!! ATTGCAACATTTTTAGGTAT+TGG + chr6.1:27951118-27951137 MS.gene054164:CDS 25.0%
AAGTATATTCATGTTTGCAC+TGG + chr6.1:27950907-27950926 MS.gene054164:CDS 30.0%
AATAGCAATGGAATAGTAAG+AGG - chr6.1:27948518-27948537 None:intergenic 30.0%
AATTGAAACACCAAAAATGC+CGG - chr6.1:27951101-27951120 None:intergenic 30.0%
AGTGCAAACATGAATATACT+TGG - chr6.1:27950908-27950927 None:intergenic 30.0%
AGTTGATCTATGCTTAATTG+TGG + chr6.1:27948971-27948990 MS.gene054164:intron 30.0%
ATAATTTAATGGGAAACCGA+TGG + chr6.1:27949899-27949918 MS.gene054164:intron 30.0%
ATATCTACAGAAACAACATG+AGG - chr6.1:27950678-27950697 None:intergenic 30.0%
ATCCAAGAACAATAAGAAGA+TGG - chr6.1:27950946-27950965 None:intergenic 30.0%
ATCCATCTTCTTATTGTTCT+TGG + chr6.1:27950941-27950960 MS.gene054164:CDS 30.0%
ATTGCAGTTGCTACTATAAT+TGG + chr6.1:27948837-27948856 MS.gene054164:intron 30.0%
CAGTGTTTCATAGTTTATGA+AGG + chr6.1:27948763-27948782 MS.gene054164:intron 30.0%
CTTATGAAGTCAGAAAATCA+GGG + chr6.1:27950204-27950223 MS.gene054164:CDS 30.0%
CTTCTTATTGTTCTTGGATT+AGG + chr6.1:27950947-27950966 MS.gene054164:CDS 30.0%
GATCGTATGTTAAACATCTT+AGG - chr6.1:27950814-27950833 None:intergenic 30.0%
GATGCCATTAAAAATTGCAT+AGG + chr6.1:27949325-27949344 MS.gene054164:intron 30.0%
GCAGATATAGTTCAAAATTG+TGG - chr6.1:27949095-27949114 None:intergenic 30.0%
GTGCAAACATGAATATACTT+GGG - chr6.1:27950907-27950926 None:intergenic 30.0%
TACTATAATTGGTACTCTAG+TGG + chr6.1:27948848-27948867 MS.gene054164:CDS 30.0%
TCAAATTATTACTAGTGTCG+TGG + chr6.1:27948725-27948744 MS.gene054164:intron 30.0%
TGCAAACATGAATATACTTG+GGG - chr6.1:27950906-27950925 None:intergenic 30.0%
TTAAATGTAATTGCACGTGT+CGG - chr6.1:27948692-27948711 None:intergenic 30.0%
TTGCTCAACTATTCATTCAA+TGG - chr6.1:27949368-27949387 None:intergenic 30.0%
TTGGTTCATAAAACACACAT+GGG - chr6.1:27950534-27950553 None:intergenic 30.0%
TTGTGTTTGTTCATCTTGAA+TGG + chr6.1:27950135-27950154 MS.gene054164:intron 30.0%
! ACTAATCAAAGAGCATAATC+GGG + chr6.1:27950558-27950577 MS.gene054164:intron 30.0%
! ACTATTCCATTGCTATTGTT+TGG + chr6.1:27948521-27948540 MS.gene054164:CDS 30.0%
! CATCCCTATGCAATTTTTAA+TGG - chr6.1:27949332-27949351 None:intergenic 30.0%
! GTGTTTTGTCACAAACATAA+TGG - chr6.1:27949186-27949205 None:intergenic 30.0%
! TAATTATGTTGCCATTTCAG+AGG + chr6.1:27949548-27949567 MS.gene054164:CDS 30.0%
! TTGTTATTAAGGCAAGATGT+GGG + chr6.1:27949975-27949994 MS.gene054164:intron 30.0%
! TTTGGTTCATAAAACACACA+TGG - chr6.1:27950535-27950554 None:intergenic 30.0%
! TTTTAGTGGCTTTCTTACTT+GGG + chr6.1:27948582-27948601 MS.gene054164:CDS 30.0%
!! CATGTTGATGGATTTGAAAA+CGG + chr6.1:27949470-27949489 MS.gene054164:intron 30.0%
!! TGAAACTGATTTTGATGTTG+TGG + chr6.1:27948814-27948833 MS.gene054164:intron 30.0%
!! TTTGTTATTAAGGCAAGATG+TGG + chr6.1:27949974-27949993 MS.gene054164:intron 30.0%
!!! AGGTATTGGTTTTGGATTAA+TGG + chr6.1:27951132-27951151 MS.gene054164:CDS 30.0%
!!! TTTGTTGACTCTATTTTGAG+TGG + chr6.1:27950447-27950466 MS.gene054164:intron 30.0%
ACCTGCATATTCAATTGTCT+TGG + chr6.1:27948481-27948500 MS.gene054164:CDS 35.0%
ATAGTACCTATGAGATCTCT+TGG + chr6.1:27948879-27948898 MS.gene054164:CDS 35.0%
GCTTATGAAGTCAGAAAATC+AGG + chr6.1:27950203-27950222 MS.gene054164:CDS 35.0%
GTAAAAATAGTACCAGTGGT+TGG - chr6.1:27949693-27949712 None:intergenic 35.0%
TAGAGACTAGATACATCTAG+AGG + chr6.1:27949131-27949150 MS.gene054164:intron 35.0%
TCCAAGACAATTGAATATGC+AGG - chr6.1:27948485-27948504 None:intergenic 35.0%
TTAGCATCAAACGCGAATAT+CGG + chr6.1:27951004-27951023 MS.gene054164:CDS 35.0%
TTTGCTCCAAACAATAGCAA+TGG - chr6.1:27948530-27948549 None:intergenic 35.0%
TTTGTGACAAAACACTAGCT+TGG + chr6.1:27949191-27949210 MS.gene054164:intron 35.0%
! CTTGATTTAACGGGTAATGT+TGG + chr6.1:27950167-27950186 MS.gene054164:intron 35.0%
! CTTTTAGTGGCTTTCTTACT+TGG + chr6.1:27948581-27948600 MS.gene054164:CDS 35.0%
! TTGTTGCATTTTCTGCGTTT+GGG + chr6.1:27949744-27949763 MS.gene054164:intron 35.0%
!! CGCTGCAAACTTTGTTATTA+AGG + chr6.1:27949964-27949983 MS.gene054164:intron 35.0%
!! TATCTGTGCCGTTTATTTCA+TGG + chr6.1:27949623-27949642 MS.gene054164:CDS 35.0%
!! TTTCATGGTGTTGTTTGCAT+TGG + chr6.1:27949638-27949657 MS.gene054164:CDS 35.0%
AAAATAGTACCAGTGGTTGG+TGG - chr6.1:27949690-27949709 None:intergenic 40.0%
AAACACCAAAAATGCCGGTA+AGG - chr6.1:27951096-27951115 None:intergenic 40.0%
AGTATGACCAGCAGGTATAA+GGG - chr6.1:27950394-27950413 None:intergenic 40.0%
ATAAGGGGAGTAATCAGCTT+TGG - chr6.1:27950378-27950397 None:intergenic 40.0%
ATACAAGAAGGAACTCTTCC+AGG + chr6.1:27950315-27950334 MS.gene054164:CDS 40.0%
ATACGATCTATTTCGTTCGC+AGG + chr6.1:27950826-27950845 MS.gene054164:intron 40.0%
CAACAAGTAGTTCGTTCAAC+TGG + chr6.1:27948554-27948573 MS.gene054164:CDS 40.0%
CAGCTACACAACAATCAACA+AGG - chr6.1:27949527-27949546 None:intergenic 40.0%
GACTAATGTGCTCACTAAAG+CGG - chr6.1:27948420-27948439 None:intergenic 40.0%
GCTTTAGTGAGCACATTAGT+CGG + chr6.1:27948419-27948438 MS.gene054164:CDS 40.0%
TGAATATACTTGGGGCAGTT+TGG - chr6.1:27950898-27950917 None:intergenic 40.0%
TGGGAATCTTTAGTTGTTCC+TGG + chr6.1:27951067-27951086 MS.gene054164:CDS 40.0%
TGTTACCTGCATTAAGACCA+AGG - chr6.1:27950421-27950440 None:intergenic 40.0%
! AAAGTTGCAGCAGCTCTAAT+GGG + chr6.1:27948915-27948934 MS.gene054164:CDS 40.0%
! ATTACGATTGAAAGCGTGTC+TGG + chr6.1:27948640-27948659 MS.gene054164:intron 40.0%
! CTAATGGGTAGCTATATTGG+TGG + chr6.1:27948930-27948949 MS.gene054164:CDS 40.0%
! CTTGTTGCATTTTCTGCGTT+TGG + chr6.1:27949743-27949762 MS.gene054164:intron 40.0%
! GCTCTAATGGGTAGCTATAT+TGG + chr6.1:27948927-27948946 MS.gene054164:CDS 40.0%
! TTCAACTGGAACGCTTTTAG+TGG + chr6.1:27948568-27948587 MS.gene054164:CDS 40.0%
!!! CAGGTATTTTTTGTGGTCGT+TGG + chr6.1:27950845-27950864 MS.gene054164:intron 40.0%
!!! GCTAGCTAGTTTTGGTTTGT+TGG + chr6.1:27949433-27949452 MS.gene054164:intron 40.0%
!!! TCGTTCGCAGGTATTTTTTG+TGG + chr6.1:27950838-27950857 MS.gene054164:intron 40.0%
AAAATGCCGGTAAGGATTCC+AGG - chr6.1:27951088-27951107 None:intergenic 45.0%
AACAGCTTGTGGAATGGCTA+AGG + chr6.1:27951036-27951055 MS.gene054164:CDS 45.0%
AACTCTCTGCAGTCACTAAC+AGG + chr6.1:27949242-27949261 MS.gene054164:intron 45.0%
AATGGCTAAGGCTAAAGGCT+GGG + chr6.1:27951048-27951067 MS.gene054164:CDS 45.0%
ACGATGATTGCAGTTACTCC+TGG - chr6.1:27950336-27950355 None:intergenic 45.0%
AGGAGTTGAGTCTAGTGGAA+GGG + chr6.1:27949262-27949281 MS.gene054164:intron 45.0%
ATTACTCCCCTTATACCTGC+TGG + chr6.1:27950384-27950403 MS.gene054164:CDS 45.0%
CAGTATGACCAGCAGGTATA+AGG - chr6.1:27950395-27950414 None:intergenic 45.0%
CCATTCCACAAGCTGTTGTA+GGG - chr6.1:27951033-27951052 None:intergenic 45.0%
CTAACAGGAGTTGAGTCTAG+TGG + chr6.1:27949257-27949276 MS.gene054164:intron 45.0%
GAATATGCAGGTGCATCATG+TGG - chr6.1:27948473-27948492 None:intergenic 45.0%
GATCTCTTGGTCCTGATAAC+TGG + chr6.1:27948892-27948911 MS.gene054164:CDS 45.0%
GCTGCAACTTTCCAGTTATC+AGG - chr6.1:27948906-27948925 None:intergenic 45.0%
GTATGACCAGCAGGTATAAG+GGG - chr6.1:27950393-27950412 None:intergenic 45.0%
GTTGTTCCTGGAATCCTTAC+CGG + chr6.1:27951079-27951098 MS.gene054164:CDS 45.0%
TCAGGACCAAGAGATCTCAT+AGG - chr6.1:27948888-27948907 None:intergenic 45.0%
TGTCAGACATCAACGCATGT+TGG - chr6.1:27948669-27948688 None:intergenic 45.0%
TGTGGAATGGCTAAGGCTAA+AGG + chr6.1:27951043-27951062 MS.gene054164:CDS 45.0%
! AATCAGCTTTGGTGCAAGAG+TGG - chr6.1:27950367-27950386 None:intergenic 45.0%
! GAAAGTTGCAGCAGCTCTAA+TGG + chr6.1:27948914-27948933 MS.gene054164:CDS 45.0%
! GGAATCCTTACCGGCATTTT+TGG + chr6.1:27951088-27951107 MS.gene054164:CDS 45.0%
! TGCGTTTGGGCCAGAATTTT+TGG + chr6.1:27949757-27949776 MS.gene054164:intron 45.0%
!! GATGAGTCGCTAGCTAGTTT+TGG + chr6.1:27949425-27949444 MS.gene054164:intron 45.0%
!! GGACTTGCTGCAAGTAATCT+TGG + chr6.1:27948440-27948459 MS.gene054164:CDS 45.0%
!! TGTTGCCTTGGTCTTAATGC+AGG + chr6.1:27950413-27950432 MS.gene054164:CDS 45.0%
!!! ATCAGTTTTAGCTGCAGGAG+TGG + chr6.1:27949587-27949606 MS.gene054164:CDS 45.0%
!!! TCAGCATCAGTTTTAGCTGC+AGG + chr6.1:27949582-27949601 MS.gene054164:CDS 45.0%
AAGGCAACAGTATGACCAGC+AGG - chr6.1:27950402-27950421 None:intergenic 50.0%
AGGCAAGATGTGGGCAAATG+TGG + chr6.1:27949984-27950003 MS.gene054164:intron 50.0%
CAGGAGTTGAGTCTAGTGGA+AGG + chr6.1:27949261-27949280 MS.gene054164:intron 50.0%
CCCTACAACAGCTTGTGGAA+TGG + chr6.1:27951030-27951049 MS.gene054164:CDS 50.0%
CGCAATTGCGGCTGCAATAT+AGG - chr6.1:27950040-27950059 None:intergenic 50.0%
GAATGGCTAAGGCTAAAGGC+TGG + chr6.1:27951047-27951066 MS.gene054164:CDS 50.0%
GCAGTAGCTGTCTGCAAAAC+TGG - chr6.1:27950237-27950256 None:intergenic 50.0%
GCAGTCTACAGTCGCAATTG+CGG - chr6.1:27950052-27950071 None:intergenic 50.0%
GCATCAAACGCGAATATCGG+CGG + chr6.1:27951007-27951026 MS.gene054164:CDS 50.0%
GCCATTCCACAAGCTGTTGT+AGG - chr6.1:27951034-27951053 None:intergenic 50.0%
GGAGTTGAGTCTAGTGGAAG+GGG + chr6.1:27949263-27949282 MS.gene054164:intron 50.0%
GTGGCTTTCTTACTTGGGTC+AGG + chr6.1:27948587-27948606 MS.gene054164:CDS 50.0%
TGCTGGTCATACTGTTGCCT+TGG + chr6.1:27950401-27950420 MS.gene054164:CDS 50.0%
TGTCTGTGCAACTGCCATTG+TGG - chr6.1:27950010-27950029 None:intergenic 50.0%
TTTGTGGTCGTTGGAGCTAG+TGG + chr6.1:27950854-27950873 MS.gene054164:CDS 50.0%
! CAAACCAAGCGCCTCTGAAA+TGG - chr6.1:27949562-27949581 None:intergenic 50.0%
GTGGGCAAATGTGGCCACAA+TGG + chr6.1:27949993-27950012 MS.gene054164:intron 55.0%
! GTCTAGTGGAAGGGGCTAGT+CGG + chr6.1:27949271-27949290 MS.gene054164:intron 55.0%
!! GTTGCCATTTCAGAGGCGCT+TGG + chr6.1:27949555-27949574 MS.gene054164:CDS 55.0%
GAGACTGCACCACCAACCAC+TGG + chr6.1:27949678-27949697 MS.gene054164:CDS 60.0%
!! GGTTGGTGGTGCAGTCTCTG+CGG - chr6.1:27949676-27949695 None:intergenic 60.0%
!! GTTGGTGGTGCAGTCTCTGC+GGG - chr6.1:27949675-27949694 None:intergenic 60.0%
GGCGGCCCTACAACAGCTTG+TGG + chr6.1:27951025-27951044 MS.gene054164:CDS 65.0%
!! GGGGCTAGTCGGACACAGTG+TGG + chr6.1:27949282-27949301 MS.gene054164:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 27948407 27951171 27948407 ID=MS.gene054164
chr6.1 mRNA 27948407 27951171 27948407 ID=MS.gene054164.t1;Parent=MS.gene054164
chr6.1 exon 27948407 27948608 27948407 ID=MS.gene054164.t1.exon1;Parent=MS.gene054164.t1
chr6.1 CDS 27948407 27948608 27948407 ID=cds.MS.gene054164.t1;Parent=MS.gene054164.t1
chr6.1 exon 27948844 27948954 27948844 ID=MS.gene054164.t1.exon2;Parent=MS.gene054164.t1
chr6.1 CDS 27948844 27948954 27948844 ID=cds.MS.gene054164.t1;Parent=MS.gene054164.t1
chr6.1 exon 27949544 27949699 27949544 ID=MS.gene054164.t1.exon3;Parent=MS.gene054164.t1
chr6.1 CDS 27949544 27949699 27949544 ID=cds.MS.gene054164.t1;Parent=MS.gene054164.t1
chr6.1 exon 27950193 27950434 27950193 ID=MS.gene054164.t1.exon4;Parent=MS.gene054164.t1
chr6.1 CDS 27950193 27950434 27950193 ID=cds.MS.gene054164.t1;Parent=MS.gene054164.t1
chr6.1 exon 27950848 27951171 27950848 ID=MS.gene054164.t1.exon5;Parent=MS.gene054164.t1
chr6.1 CDS 27950848 27951171 27950848 ID=cds.MS.gene054164.t1;Parent=MS.gene054164.t1
Gene Sequence

>MS.gene054164

ATGGTGAGTGCCGCTTTAGTGAGCACATTAGTCGGACTTGCTGCAAGTAATCTTGGAATTCTTCCACATGATGCACCTGCATATTCAATTGTCTTGGAGTTTCTGTTACCTCTTACTATTCCATTGCTATTGTTTGGAGCAAATTTACAACAAGTAGTTCGTTCAACTGGAACGCTTTTAGTGGCTTTCTTACTTGGGTCAGGTGATTCTATTTATCTAAACAAAATGGCTGAATTACGATTGAAAGCGTGTCTGGTGTCCAACATGCGTTGATGTCTGACACCGACACGTGCAATTACATTTAATTATTTAATTTTCTCAAATTATTACTAGTGTCGTGGTGTCTGTTTCTGTGTCAGTGTTTCATAGTTTATGAAGGTACTGTGTGAGATTTTTAACATGTCTTGTGAAACTGATTTTGATGTTGTGGATTGCAGTTGCTACTATAATTGGTACTCTAGTGGCATTTCTTATAGTACCTATGAGATCTCTTGGTCCTGATAACTGGAAAGTTGCAGCAGCTCTAATGGGTAGCTATATTGGTGGATGTAAGTGCTTAAAACAAGTTGATCTATGCTTAATTGTGGTTAACTTAAATTAATGTATATTTGAATTCATTGTTGTATTTCTGATAACAATAATCAACTCAAATTAAACAGTTCATTTGATTTAAACAAGTTGCAAACCACAATTTTGAACTATATCTGCAACTTTAAGACAAAGTTAGAGACTAGATACATCTAGAGGTTTCTCCATGTATTACACGTCTATAATAACCATTATGTTTGTGACAAAACACTAGCTTGGTTAAGCAAAAGACAAAATATATGCACTAAACTCTCTGCAGTCACTAACAGGAGTTGAGTCTAGTGGAAGGGGCTAGTCGGACACAGTGTGGATAACGTTGAATGAATACTTGATGCCATTAAAAATTGCATAGGGATGAAGCATAGATATACCATTGAATGAATAGTTGAGCAATTAAGAATTGGGTTTTGTATATCTTTTCAATTAACATGATGAGTCGCTAGCTAGTTTTGGTTTGTTGGTATATTATTTGAAACATGTTGATGGATTTGAAAACGGTAAAACTTGAAATGAATTAACTTTGACTCTTCCTTGTTGATTGTTGTGTAGCTGTTAATTATGTTGCCATTTCAGAGGCGCTTGGTTTGTCAGCATCAGTTTTAGCTGCAGGAGTGGCAGCAGATAATGTTATCTGTGCCGTTTATTTCATGGTGTTGTTTGCATTGGCTTCTAAAATACCCGCAGAGACTGCACCACCAACCACTGGTACTATTTTTACTATATCAGTATTCCAATTTATAAGCTGTTTCTTGTTGCATTTTCTGCGTTTGGGCCAGAATTTTTGGAATGAATAGTTTTTTTATTACCGGATTGATATAATGAATACACTAACATCTACATATGTTGATTGTTTCCAGTATTAGTTATGAAATGTGATAGAATTAAAGAAAAGTTATAAGATTGAATAATTTAATGGGAAACCGATGGAATCATCATTATAGTTCTAAATTGAGGGCGCAGTTGCAGTTACGCTGCAAACTTTGTTATTAAGGCAAGATGTGGGCAAATGTGGCCACAATGGCAGTTGCACAGACATCTAAAACCTATATTGCAGCCGCAATTGCGACTGTAGACTGCAATTTAAAACTATGGTTATGATGAAGTCATTCAGTATTCTTGACTATATAAGTCTTATAAAAATTGTGTTTGTTCATCTTGAATGGAAATTTTAGCTTGATTTAACGGGTAATGTTGGCAGATGAAGAAATGCTTATGAAGTCAGAAAATCAGGGCAATATGCCAGTTTTGCAGACAGCTACTGCAGTTGCTACATCATTTTTAATATGTAGAGCTGCCACATATTTCACAAAATTATACGGTATACAAGAAGGAACTCTTCCAGGAGTAACTGCAATCATCGTCGTTTTAGCCACTCTTGCACCAAAGCTGATTACTCCCCTTATACCTGCTGGTCATACTGTTGCCTTGGTCTTAATGCAGGTAACAAAAAACTTTGTTGACTCTATTTTGAGTGGTTTCTATATGTGTGCAGCACTGTCACTATAATCTTTGTAAGCATTGAAATTACAAAATCATCCCATGTGTGTTTTATGAACCAAATTAACTAATCAAAGAGCATAATCGGGACCAAACTAAATAATGAAAGTAATATTTGAGGACCAAATTGACTAACAAAAGAGATATTAAAGGACCAAAATTAATTTTTACTCTTCTATTCTGCCTCATGTTGTTTCTGTAGATATAGATCTTATGAACTTCAGTTGTAAAATATGTAAATTCTTTAGGTTGACAATTATAACTGTTATGGCTTTGGCAAATATGTTTTACTTCTTGTAAAAATTCAAGGATCATGGGACCTAAGATGTTTAACATACGATCTATTTCGTTCGCAGGTATTTTTTGTGGTCGTTGGAGCTAGTGGAAGTATATTGAATGTTATCCAAACTGCCCCAAGTATATTCATGTTTGCACTGGTTCAAGTTACTATCCATCTTCTTATTGTTCTTGGATTAGGAAAGTTATTTAAGCTTGATTTGAAGCTATTACTTTTAGCATCAAACGCGAATATCGGCGGCCCTACAACAGCTTGTGGAATGGCTAAGGCTAAAGGCTGGGAATCTTTAGTTGTTCCTGGAATCCTTACCGGCATTTTTGGTGTTTCAATTGCAACATTTTTAGGTATTGGTTTTGGATTAATGGTTCTAAAACACTTGTAG
Protein sequence

>MS.gene054164.t1

MVSAALVSTLVGLAASNLGILPHDAPAYSIVLEFLLPLTIPLLLFGANLQQVVRSTGTLLVAFLLGSVATIIGTLVAFLIVPMRSLGPDNWKVAAALMGSYIGGSVNYVAISEALGLSASVLAAGVAADNVICAVYFMVLFALASKIPAETAPPTTDEEMLMKSENQGNMPVLQTATAVATSFLICRAATYFTKLYGIQEGTLPGVTAIIVVLATLAPKLITPLIPAGHTVALVLMQVFFVVVGASGSILNVIQTAPSIFMFALVQVTIHLLIVLGLGKLFKLDLKLLLLASNANIGGPTTACGMAKAKGWESLVVPGILTGIFGVSIATFLGIGFGLMVLKHL