Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054340.t1 | XP_003619118.1 | 92.2 | 205 | 16 | 0 | 1 | 205 | 1 | 205 | 1.10E-95 | 359.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054340.t1 | O81098 | 56.9 | 204 | 87 | 1 | 3 | 205 | 2 | 205 | 3.0e-57 | 223.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054340.t1 | G7KIC7 | 92.2 | 205 | 16 | 0 | 1 | 205 | 1 | 205 | 8.1e-96 | 359.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054340 | MS.gene62426 | 0.815401 | 9.42E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054340.t1 | MTR_6g042230 | 92.195 | 205 | 16 | 0 | 1 | 205 | 1 | 205 | 3.01e-138 | 385 |
MS.gene054340.t1 | MTR_5g005470 | 62.621 | 206 | 76 | 1 | 1 | 205 | 1 | 206 | 2.95e-87 | 256 |
MS.gene054340.t1 | MTR_5g016200 | 63.682 | 201 | 71 | 1 | 1 | 201 | 1 | 199 | 2.59e-84 | 248 |
MS.gene054340.t1 | MTR_5g016220 | 61.765 | 204 | 77 | 1 | 3 | 205 | 128 | 331 | 1.11e-82 | 249 |
MS.gene054340.t1 | MTR_5g016220 | 49.624 | 133 | 64 | 1 | 1 | 130 | 1 | 133 | 2.35e-35 | 127 |
MS.gene054340.t1 | MTR_6g088010 | 57.005 | 207 | 86 | 1 | 1 | 204 | 1 | 207 | 2.66e-79 | 236 |
MS.gene054340.t1 | MTR_6g088020 | 55.825 | 206 | 88 | 1 | 1 | 203 | 1 | 206 | 2.16e-76 | 228 |
MS.gene054340.t1 | MTR_7g090220 | 42.211 | 199 | 113 | 2 | 7 | 204 | 50 | 247 | 9.79e-47 | 154 |
MS.gene054340.t1 | MTR_3g058520 | 59.091 | 66 | 26 | 1 | 128 | 193 | 94 | 158 | 9.74e-19 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054340.t1 | AT3G22320 | 56.863 | 204 | 87 | 1 | 3 | 205 | 2 | 205 | 3.96e-79 | 235 |
MS.gene054340.t1 | AT5G57980 | 45.327 | 214 | 104 | 5 | 1 | 205 | 1 | 210 | 4.33e-54 | 172 |
MS.gene054340.t1 | AT2G41340 | 39.604 | 202 | 120 | 2 | 4 | 204 | 17 | 217 | 1.87e-43 | 145 |
MS.gene054340.t1 | AT3G57080 | 34.975 | 203 | 130 | 2 | 3 | 204 | 20 | 221 | 8.80e-39 | 133 |
MS.gene054340.t1 | AT3G54490 | 35.000 | 200 | 128 | 2 | 7 | 205 | 35 | 233 | 9.70e-35 | 123 |
MS.gene054340.t1 | AT2G41340 | 36.517 | 178 | 102 | 3 | 4 | 180 | 17 | 184 | 8.72e-29 | 107 |
MS.gene054340.t1 | AT2G41340 | 38.272 | 162 | 98 | 2 | 4 | 164 | 17 | 177 | 5.70e-28 | 104 |
MS.gene054340.t1 | AT3G16680 | 50.000 | 66 | 28 | 2 | 94 | 155 | 12 | 76 | 4.64e-11 | 57.4 |
Find 37 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTCGCATTGAAGCATTTC+TGG | 0.166532 | 6.1:-23722853 | MS.gene054340:intron |
GATCCTGTTGCGAAATATTA+TGG | 0.255044 | 6.1:-23721286 | MS.gene054340:CDS |
CTTTGCTTTGAACTCTTGTT+TGG | 0.257576 | 6.1:+23723100 | None:intergenic |
ACATACCGAATTGTCGTATA+AGG | 0.293822 | 6.1:-23721202 | None:intergenic |
GGACGCAACGATGGGGATTT+CGG | 0.293895 | 6.1:-23723219 | None:intergenic |
GGATCCGTCAGCAGCATTCT+AGG | 0.337631 | 6.1:+23721304 | None:intergenic |
TGCCTGCTGTCTCACTTTGC+CGG | 0.346861 | 6.1:+23721233 | None:intergenic |
AGTCCATAATATTTCGCAAC+AGG | 0.384158 | 6.1:+23721283 | None:intergenic |
GACAAGTTGTCCGGATAATC+CGG | 0.393789 | 6.1:-23721252 | MS.gene054340:CDS |
GGTGTAGGAGGATGAACTTC+TGG | 0.404596 | 6.1:-23722098 | MS.gene054340:intron |
GCGGTGAGCACTTGATGTTC+CGG | 0.411314 | 6.1:+23722049 | None:intergenic |
TCTCACTTTGCCGGATTATC+CGG | 0.415858 | 6.1:+23721242 | None:intergenic |
GTTCAGCTCGGATCGTGCTT+TGG | 0.418124 | 6.1:+23722887 | None:intergenic |
GAAATCCTTATACGACAATT+CGG | 0.465599 | 6.1:+23721197 | None:intergenic |
CAATGCGAACTTCAGAGAAA+AGG | 0.466018 | 6.1:+23722865 | None:intergenic |
TTTCGTGATGATGGCAAACT+TGG | 0.481792 | 6.1:-23722996 | MS.gene054340:CDS |
TATGTGTTCTTTCGTGATGA+TGG | 0.491128 | 6.1:-23723005 | MS.gene054340:CDS |
CAAGAGTTCAAAGCAAAGTT+CGG | 0.497834 | 6.1:-23723095 | MS.gene054340:CDS |
GATGGGGATTTCGGAGGAAG+AGG | 0.499436 | 6.1:-23723210 | MS.gene054340:CDS |
AAAGAACTCATTGTCGGTGA+GGG | 0.504580 | 6.1:-23722951 | MS.gene054340:CDS |
GCTATCAAAGAACTCATTGT+CGG | 0.508987 | 6.1:-23722957 | MS.gene054340:CDS |
TAAAGCGTGGACAAGTTGTC+CGG | 0.515202 | 6.1:-23721261 | MS.gene054340:CDS |
AAGAACTCATTGTCGGTGAG+GGG | 0.535656 | 6.1:-23722950 | MS.gene054340:CDS |
ACATGTTTACCTCGGAGTCT+AGG | 0.546900 | 6.1:+23723123 | None:intergenic |
AACAGAGCATGTGCTAGTGC+CGG | 0.578402 | 6.1:-23722068 | MS.gene054340:CDS |
TTGTTTGGACATGTTTACCT+CGG | 0.592527 | 6.1:+23723115 | None:intergenic |
TTCAGAGAAAAGGTTCAGCT+CGG | 0.596409 | 6.1:+23722875 | None:intergenic |
ATCCGGCAAAGTGAGACAGC+AGG | 0.597444 | 6.1:-23721235 | MS.gene054340:CDS |
ATACACTGTCAAAGAAACTC+AGG | 0.599555 | 6.1:-23721999 | MS.gene054340:intron |
CAAGTCTTTCTTCTCAGCAG+CGG | 0.610322 | 6.1:+23722030 | None:intergenic |
CAAAGAACTCATTGTCGGTG+AGG | 0.613545 | 6.1:-23722952 | MS.gene054340:CDS |
AAATATTATGGACTAAAGCG+TGG | 0.623203 | 6.1:-23721274 | MS.gene054340:CDS |
AGAACTCATTGTCGGTGAGG+GGG | 0.627512 | 6.1:-23722949 | MS.gene054340:CDS |
GCTACCTAGAATGCTGCTGA+CGG | 0.633823 | 6.1:-23721308 | MS.gene054340:CDS |
CGCAACGATGGGGATTTCGG+AGG | 0.678819 | 6.1:-23723216 | None:intergenic |
TTACCTCGGAGTCTAGGACA+TGG | 0.719913 | 6.1:+23723129 | None:intergenic |
CTACCATGTCCTAGACTCCG+AGG | 0.738073 | 6.1:-23723132 | MS.gene054340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAATTATAATCTAATATTTA+TGG | - | chr6.1:23723071-23723090 | MS.gene054340:CDS | 10.0% |
!! | AGAATATTATAATTGCAAAT+AGG | + | chr6.1:23723030-23723049 | None:intergenic | 15.0% |
!! | ATAATGTCAATTCATAAATT+TGG | + | chr6.1:23721704-23721723 | None:intergenic | 15.0% |
!! | TGATTATAAATTTCAATTGA+AGG | + | chr6.1:23721775-23721794 | None:intergenic | 15.0% |
!!! | ATTTTTTTTGTTAGAATAGA+TGG | - | chr6.1:23722212-23722231 | MS.gene054340:intron | 15.0% |
!!! | GTCTTTTAAATTTAACAAAT+AGG | - | chr6.1:23721741-23721760 | MS.gene054340:intron | 15.0% |
!! | TTCATTTAACCTAAACTATA+AGG | - | chr6.1:23721933-23721952 | MS.gene054340:intron | 20.0% |
!!! | TATTAGTTTTTTGAATAGTG+AGG | + | chr6.1:23721365-23721384 | None:intergenic | 20.0% |
!!! | TTTTTTGAATGGATAAACTA+CGG | - | chr6.1:23722086-23722105 | MS.gene054340:CDS | 20.0% |
! | ACATTCATATAACTTTGCAA+GGG | + | chr6.1:23722011-23722030 | None:intergenic | 25.0% |
! | ACATTTGAAAAACTGTTCTA+CGG | + | chr6.1:23721248-23721267 | None:intergenic | 25.0% |
! | AGCTATATAGTTGTTAAAAC+AGG | - | chr6.1:23721624-23721643 | MS.gene054340:intron | 25.0% |
! | ATGAATGTATAGAAAATGAC+AGG | - | chr6.1:23722023-23722042 | MS.gene054340:CDS | 25.0% |
! | CGTTTGTTTAATCTAGAAAA+TGG | + | chr6.1:23722882-23722901 | None:intergenic | 25.0% |
! | GCTATATAGTTGTTAAAACA+GGG | - | chr6.1:23721625-23721644 | MS.gene054340:intron | 25.0% |
! | GTTCTCATCTACATATTAAA+AGG | + | chr6.1:23722527-23722546 | None:intergenic | 25.0% |
! | TACATTCATATAACTTTGCA+AGG | + | chr6.1:23722012-23722031 | None:intergenic | 25.0% |
! | TTAACCTAAACTATAAGGTA+AGG | - | chr6.1:23721938-23721957 | MS.gene054340:intron | 25.0% |
! | TTTAATCTAGAAAATGGATC+AGG | + | chr6.1:23722876-23722895 | None:intergenic | 25.0% |
!! | AAAGAACACATAGATTTTGT+CGG | + | chr6.1:23721400-23721419 | None:intergenic | 25.0% |
!! | ATTTTGCAATTTCGTAAAAC+CGG | - | chr6.1:23721865-23721884 | MS.gene054340:intron | 25.0% |
!! | TCTTCATCTTATAGATGTTT+TGG | - | chr6.1:23722983-23723002 | MS.gene054340:CDS | 25.0% |
!! | TTTTCTAGATTAAACAAACG+AGG | - | chr6.1:23722882-23722901 | MS.gene054340:CDS | 25.0% |
!!! | GTTTTAACAACTATATAGCT+AGG | + | chr6.1:23721624-23721643 | None:intergenic | 25.0% |
AATTCTATTTACATGCACCT+TGG | - | chr6.1:23722646-23722665 | MS.gene054340:intron | 30.0% | |
ATAGTATAAGGGAAAACAAC+AGG | - | chr6.1:23722144-23722163 | MS.gene054340:intron | 30.0% | |
ATATAGCTAGGTAGTGATTT+AGG | + | chr6.1:23721612-23721631 | None:intergenic | 30.0% | |
ATGAAGAGATCCAATTCAAT+TGG | + | chr6.1:23722752-23722771 | None:intergenic | 30.0% | |
ATTCTGCAATCCAATTGAAT+TGG | - | chr6.1:23722739-23722758 | MS.gene054340:intron | 30.0% | |
GAATATATTTCTTCGTGTGT+TGG | - | chr6.1:23722257-23722276 | MS.gene054340:intron | 30.0% | |
GAATGAATAATGTCCAAACT+TGG | + | chr6.1:23722914-23722933 | None:intergenic | 30.0% | |
GTTACCTTACCTTATAGTTT+AGG | + | chr6.1:23721945-23721964 | None:intergenic | 30.0% | |
GTTTGATCGTTAATATTGCA+AGG | + | chr6.1:23721907-23721926 | None:intergenic | 30.0% | |
TAGAAAATGACAGGAAATTG+AGG | - | chr6.1:23722032-23722051 | MS.gene054340:CDS | 30.0% | |
TAGTATAAGGGAAAACAACA+GGG | - | chr6.1:23722145-23722164 | MS.gene054340:intron | 30.0% | |
TATAGCTAGGTAGTGATTTA+GGG | + | chr6.1:23721611-23721630 | None:intergenic | 30.0% | |
! | AAATATTATGGACTAAAGCG+TGG | - | chr6.1:23723139-23723158 | MS.gene054340:CDS | 30.0% |
!!! | AGCGAAAGACTTTTTTTGAA+TGG | - | chr6.1:23722075-23722094 | MS.gene054340:CDS | 30.0% |
AGGATCAACAATTTACTCTC+CGG | + | chr6.1:23721887-23721906 | None:intergenic | 35.0% | |
AGTCCATAATATTTCGCAAC+AGG | + | chr6.1:23723133-23723152 | None:intergenic | 35.0% | |
AGTTTCCAATTCAGGTATCA+AGG | + | chr6.1:23722565-23722584 | None:intergenic | 35.0% | |
ATACACTGTCAAAGAAACTC+AGG | - | chr6.1:23722414-23722433 | MS.gene054340:intron | 35.0% | |
ATAGCTAGGTAGTGATTTAG+GGG | + | chr6.1:23721610-23721629 | None:intergenic | 35.0% | |
ATGTGAGCTGAATTTCTGAA+TGG | + | chr6.1:23722614-23722633 | None:intergenic | 35.0% | |
CAAGAGTTCAAAGCAAAGTT+CGG | - | chr6.1:23721318-23721337 | MS.gene054340:intron | 35.0% | |
CCACATTTCATTACTCATTG+GGG | - | chr6.1:23722188-23722207 | MS.gene054340:intron | 35.0% | |
GATCCTGTTGCGAAATATTA+TGG | - | chr6.1:23723127-23723146 | MS.gene054340:CDS | 35.0% | |
GATTTAGGGGTTAGAAGAAA+GGG | + | chr6.1:23721597-23721616 | None:intergenic | 35.0% | |
GCCACATTTCATTACTCATT+GGG | - | chr6.1:23722187-23722206 | MS.gene054340:intron | 35.0% | |
GCTATCAAAGAACTCATTGT+CGG | - | chr6.1:23721456-23721475 | MS.gene054340:intron | 35.0% | |
GGACATGGGAAAAAATTGAA+TGG | - | chr6.1:23722687-23722706 | MS.gene054340:intron | 35.0% | |
GGACATTATTCATTCAAGCA+TGG | - | chr6.1:23722919-23722938 | MS.gene054340:CDS | 35.0% | |
GTACTCAAGAATTGTTGAGA+GGG | - | chr6.1:23721647-23721666 | MS.gene054340:intron | 35.0% | |
TAATGCCTTGATACCTGAAT+TGG | - | chr6.1:23722557-23722576 | MS.gene054340:intron | 35.0% | |
TATGTGTTCTTTCGTGATGA+TGG | - | chr6.1:23721408-23721427 | MS.gene054340:intron | 35.0% | |
TCATGTTAGATGGAACACAA+CGG | - | chr6.1:23722768-23722787 | MS.gene054340:intron | 35.0% | |
TGAATGGATAAACTACGGAT+AGG | - | chr6.1:23722091-23722110 | MS.gene054340:CDS | 35.0% | |
TGATACCTGAATTGGAAACT+AGG | - | chr6.1:23722565-23722584 | MS.gene054340:intron | 35.0% | |
TGATTTAGGGGTTAGAAGAA+AGG | + | chr6.1:23721598-23721617 | None:intergenic | 35.0% | |
TGCCACATTTCATTACTCAT+TGG | - | chr6.1:23722186-23722205 | MS.gene054340:intron | 35.0% | |
TTGGATCTCTTCATGTTAGA+TGG | - | chr6.1:23722758-23722777 | MS.gene054340:intron | 35.0% | |
TTGTTTGGACATGTTTACCT+CGG | + | chr6.1:23721301-23721320 | None:intergenic | 35.0% | |
! | AACACATAGATTTTGTCGGA+AGG | + | chr6.1:23721396-23721415 | None:intergenic | 35.0% |
! | ATATTTCTTCGTGTGTTGGT+AGG | - | chr6.1:23722261-23722280 | MS.gene054340:intron | 35.0% |
! | CTTTGCTTTGAACTCTTGTT+TGG | + | chr6.1:23721316-23721335 | None:intergenic | 35.0% |
AAAGAACTCATTGTCGGTGA+GGG | - | chr6.1:23721462-23721481 | MS.gene054340:intron | 40.0% | |
AACAATGCATGCAAGGACAT+GGG | - | chr6.1:23722673-23722692 | MS.gene054340:intron | 40.0% | |
AGGTAAGGTAACACTTGTAG+TGG | - | chr6.1:23721953-23721972 | MS.gene054340:intron | 40.0% | |
ATGGATAAACTACGGATAGG+TGG | - | chr6.1:23722094-23722113 | MS.gene054340:CDS | 40.0% | |
CAATGCGAACTTCAGAGAAA+AGG | + | chr6.1:23721551-23721570 | None:intergenic | 40.0% | |
CCCCAATGAGTAATGAAATG+TGG | + | chr6.1:23722191-23722210 | None:intergenic | 40.0% | |
GGTACTCAAGAATTGTTGAG+AGG | - | chr6.1:23721646-23721665 | MS.gene054340:intron | 40.0% | |
TAACGGTTTGATGTATGTGC+TGG | - | chr6.1:23722291-23722310 | MS.gene054340:intron | 40.0% | |
TCTATGACAAACTTCTGCTG+CGG | - | chr6.1:23723047-23723066 | MS.gene054340:CDS | 40.0% | |
TGCATGCATTGTTCAATCCA+AGG | + | chr6.1:23722666-23722685 | None:intergenic | 40.0% | |
TGCGCGATTGCATAGTATAA+GGG | - | chr6.1:23722133-23722152 | MS.gene054340:intron | 40.0% | |
TGGATTGAACAATGCATGCA+AGG | - | chr6.1:23722666-23722685 | MS.gene054340:intron | 40.0% | |
TTATACTATGCAATCGCGCA+CGG | + | chr6.1:23722133-23722152 | None:intergenic | 40.0% | |
TTCAGAGAAAAGGTTCAGCT+CGG | + | chr6.1:23721541-23721560 | None:intergenic | 40.0% | |
! | AACGAGGTATCTACCAAGTT+TGG | - | chr6.1:23722898-23722917 | MS.gene054340:CDS | 40.0% |
! | AGTTCGCATTGAAGCATTTC+TGG | - | chr6.1:23721560-23721579 | MS.gene054340:intron | 40.0% |
! | GGTATCAAGGCATTACAATG+CGG | + | chr6.1:23722552-23722571 | None:intergenic | 40.0% |
! | TGTTGGTAGGTTGTCGTTAA+CGG | - | chr6.1:23722274-23722293 | MS.gene054340:intron | 40.0% |
!! | TTTCGTGATGATGGCAAACT+TGG | - | chr6.1:23721417-23721436 | MS.gene054340:intron | 40.0% |
AAGAACTCATTGTCGGTGAG+GGG | - | chr6.1:23721463-23721482 | MS.gene054340:intron | 45.0% | |
ACATGTTTACCTCGGAGTCT+AGG | + | chr6.1:23721293-23721312 | None:intergenic | 45.0% | |
CAAAGAACTCATTGTCGGTG+AGG | - | chr6.1:23721461-23721480 | MS.gene054340:intron | 45.0% | |
CAAGTCTTTCTTCTCAGCAG+CGG | + | chr6.1:23722386-23722405 | None:intergenic | 45.0% | |
CAGAGCCTAGTTTCCAATTC+AGG | + | chr6.1:23722573-23722592 | None:intergenic | 45.0% | |
GAACAATGCATGCAAGGACA+TGG | - | chr6.1:23722672-23722691 | MS.gene054340:intron | 45.0% | |
GACAAGTTGTCCGGATAATC+CGG | - | chr6.1:23723161-23723180 | MS.gene054340:CDS | 45.0% | |
GTGCGCGATTGCATAGTATA+AGG | - | chr6.1:23722132-23722151 | MS.gene054340:intron | 45.0% | |
TAAAGCGTGGACAAGTTGTC+CGG | - | chr6.1:23723152-23723171 | MS.gene054340:CDS | 45.0% | |
TATACTATGCAATCGCGCAC+GGG | + | chr6.1:23722132-23722151 | None:intergenic | 45.0% | |
TCTCACTTTGCCGGATTATC+CGG | + | chr6.1:23723174-23723193 | None:intergenic | 45.0% | |
!! | AATTATAATCTAATATTTAT+GGG | - | chr6.1:23723072-23723091 | MS.gene054340:CDS | 5.0% |
AACAGAGCATGTGCTAGTGC+CGG | - | chr6.1:23722345-23722364 | MS.gene054340:intron | 50.0% | |
AGAACTCATTGTCGGTGAGG+GGG | - | chr6.1:23721464-23721483 | MS.gene054340:intron | 50.0% | |
CGGTTTGATGTATGTGCTGG+TGG | - | chr6.1:23722294-23722313 | MS.gene054340:intron | 50.0% | |
GCTACCTAGAATGCTGCTGA+CGG | - | chr6.1:23723105-23723124 | MS.gene054340:CDS | 50.0% | |
GGTGTAGGAGGATGAACTTC+TGG | - | chr6.1:23722315-23722334 | MS.gene054340:intron | 50.0% | |
! | GATGTATGTGCTGGTGGTGT+AGG | - | chr6.1:23722300-23722319 | MS.gene054340:intron | 50.0% |
! | TTACCTCGGAGTCTAGGACA+TGG | + | chr6.1:23721287-23721306 | None:intergenic | 50.0% |
ATCCGGCAAAGTGAGACAGC+AGG | - | chr6.1:23723178-23723197 | MS.gene054340:CDS | 55.0% | |
CTACCATGTCCTAGACTCCG+AGG | - | chr6.1:23721281-23721300 | MS.gene054340:CDS | 55.0% | |
GCGGTGAGCACTTGATGTTC+CGG | + | chr6.1:23722367-23722386 | None:intergenic | 55.0% | |
GGATCCGTCAGCAGCATTCT+AGG | + | chr6.1:23723112-23723131 | None:intergenic | 55.0% | |
GTTCAGCTCGGATCGTGCTT+TGG | + | chr6.1:23721529-23721548 | None:intergenic | 55.0% | |
TGCCTGCTGTCTCACTTTGC+CGG | + | chr6.1:23723183-23723202 | None:intergenic | 55.0% | |
! | GTATGTGCTGGTGGTGTAGG+AGG | - | chr6.1:23722303-23722322 | MS.gene054340:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 23721204 | 23723231 | 23721204 | ID=MS.gene054340 |
chr6.1 | mRNA | 23721204 | 23723231 | 23721204 | ID=MS.gene054340.t1;Parent=MS.gene054340 |
chr6.1 | exon | 23722854 | 23723231 | 23722854 | ID=MS.gene054340.t1.exon1;Parent=MS.gene054340.t1 |
chr6.1 | CDS | 23722854 | 23723231 | 23722854 | ID=cds.MS.gene054340.t1;Parent=MS.gene054340.t1 |
chr6.1 | exon | 23722000 | 23722113 | 23722000 | ID=MS.gene054340.t1.exon2;Parent=MS.gene054340.t1 |
chr6.1 | CDS | 23722000 | 23722113 | 23722000 | ID=cds.MS.gene054340.t1;Parent=MS.gene054340.t1 |
chr6.1 | exon | 23721204 | 23721329 | 23721204 | ID=MS.gene054340.t1.exon3;Parent=MS.gene054340.t1 |
chr6.1 | CDS | 23721204 | 23721329 | 23721204 | ID=cds.MS.gene054340.t1;Parent=MS.gene054340.t1 |
Gene Sequence |
Protein sequence |