Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054645.t1 | XP_013461743.1 | 95.3 | 385 | 3 | 1 | 1 | 370 | 71 | 455 | 6.10E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054645.t1 | Q9C6B2 | 84.9 | 385 | 43 | 1 | 1 | 370 | 70 | 454 | 5.8e-184 | 644.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054645.t1 | G8A2C0 | 95.3 | 385 | 3 | 1 | 1 | 370 | 71 | 455 | 4.4e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054644 | MS.gene054645 | 0.990621 | 1.64E-183 | -1.69E-46 |
| MS.gene054645 | MS.gene32907 | 0.830405 | 2.99E-55 | -1.69E-46 |
| MS.gene054645 | MS.gene60551 | 0.809148 | 2.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054645.t1 | MTR_3g102620 | 95.325 | 385 | 3 | 1 | 1 | 370 | 71 | 455 | 0.0 | 731 |
| MS.gene054645.t1 | MTR_5g016270 | 79.740 | 385 | 63 | 1 | 1 | 370 | 57 | 441 | 0.0 | 629 |
| MS.gene054645.t1 | MTR_4g095075 | 79.221 | 385 | 65 | 1 | 1 | 370 | 58 | 442 | 0.0 | 620 |
| MS.gene054645.t1 | MTR_8g028050 | 75.844 | 385 | 78 | 1 | 1 | 370 | 88 | 472 | 0.0 | 600 |
| MS.gene054645.t1 | MTR_3g088440 | 41.451 | 386 | 195 | 8 | 2 | 364 | 40 | 417 | 1.88e-85 | 268 |
| MS.gene054645.t1 | MTR_2g104990 | 41.207 | 381 | 197 | 7 | 2 | 361 | 51 | 425 | 8.89e-85 | 267 |
| MS.gene054645.t1 | MTR_2g104990 | 41.207 | 381 | 197 | 7 | 2 | 361 | 76 | 450 | 2.59e-84 | 267 |
| MS.gene054645.t1 | MTR_3g088460 | 41.969 | 386 | 193 | 8 | 2 | 364 | 47 | 424 | 7.23e-84 | 265 |
| MS.gene054645.t1 | MTR_3g088440 | 42.120 | 349 | 173 | 7 | 2 | 327 | 40 | 382 | 1.31e-80 | 252 |
| MS.gene054645.t1 | MTR_3g088460 | 41.463 | 369 | 185 | 8 | 2 | 347 | 47 | 407 | 7.76e-80 | 251 |
| MS.gene054645.t1 | MTR_0041s0030 | 25.974 | 385 | 244 | 11 | 5 | 370 | 38 | 400 | 3.92e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054645.t1 | AT1G47240 | 84.935 | 385 | 43 | 1 | 1 | 370 | 70 | 454 | 0.0 | 660 |
| MS.gene054645.t1 | AT2G23150 | 80.157 | 383 | 61 | 1 | 1 | 368 | 58 | 440 | 0.0 | 626 |
| MS.gene054645.t1 | AT5G67330 | 74.805 | 385 | 82 | 1 | 1 | 370 | 54 | 438 | 0.0 | 599 |
| MS.gene054645.t1 | AT4G18790 | 75.000 | 384 | 81 | 1 | 2 | 370 | 73 | 456 | 0.0 | 570 |
| MS.gene054645.t1 | AT1G80830 | 41.388 | 389 | 198 | 9 | 2 | 368 | 49 | 429 | 4.39e-83 | 263 |
| MS.gene054645.t1 | AT1G80830 | 41.388 | 389 | 198 | 9 | 2 | 368 | 49 | 429 | 4.39e-83 | 263 |
| MS.gene054645.t1 | AT1G15960 | 41.253 | 383 | 196 | 8 | 2 | 362 | 41 | 416 | 1.14e-82 | 261 |
| MS.gene054645.t1 | AT5G03280 | 26.142 | 394 | 241 | 12 | 5 | 370 | 24 | 395 | 1.10e-22 | 100 |
Find 103 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCCTATTCTTTATATA+TGG | 0.142218 | 3.4:+90362181 | MS.gene054645:CDS |
| GAGATATGTGCTTTGGTTTA+TGG | 0.173322 | 3.4:+90360310 | MS.gene054645:CDS |
| GCGTATCATGGGGTCCTTTA+AGG | 0.176367 | 3.4:+90362476 | MS.gene054645:CDS |
| CTTGCACCCGACCTTTCTTA+TGG | 0.228027 | 3.4:-90361987 | None:intergenic |
| ATTCTTTATATATGGGGAAT+TGG | 0.260472 | 3.4:+90362189 | MS.gene054645:CDS |
| AAGAACAGGCCCAACCTTAA+AGG | 0.269338 | 3.4:-90362490 | None:intergenic |
| CTTTCGTTTGCCTGGATGTT+TGG | 0.287698 | 3.4:+90361694 | MS.gene054645:CDS |
| TATATGGGGAATTGGGTTAC+TGG | 0.300843 | 3.4:+90362197 | MS.gene054645:CDS |
| GCTGATATTCAAGAGGTTAT+TGG | 0.317388 | 3.4:+90360353 | MS.gene054645:CDS |
| TTGCACCCGACCTTTCTTAT+GGG | 0.317887 | 3.4:-90361986 | None:intergenic |
| CTTCCCTATTCTTTATATAT+GGG | 0.327610 | 3.4:+90362182 | MS.gene054645:CDS |
| ATGGCTGAACTTGCTTTGAT+TGG | 0.334674 | 3.4:+90360329 | MS.gene054645:CDS |
| ATTTCTTTAATCGAAGGTTT+AGG | 0.343077 | 3.4:-90362281 | None:intergenic |
| TTCTTTATATATGGGGAATT+GGG | 0.344410 | 3.4:+90362190 | MS.gene054645:CDS |
| TAAACCTTCGATTAAAGAAA+TGG | 0.345809 | 3.4:+90362283 | MS.gene054645:CDS |
| CCATGGCTCTTTCGTTTGCC+TGG | 0.345997 | 3.4:+90361686 | MS.gene054645:CDS |
| TTGTAGCTATTGTTTATAAC+AGG | 0.347401 | 3.4:+90362352 | MS.gene054645:CDS |
| GTTGATGTGGGCTACTTTGA+TGG | 0.363803 | 3.4:+90360196 | MS.gene054645:CDS |
| TATGCTGGGCAATTCATAAT+GGG | 0.372018 | 3.4:+90362252 | MS.gene054645:CDS |
| TTCTTATTACTGCTTCTGAT+TGG | 0.372846 | 3.4:+90360432 | MS.gene054645:CDS |
| GGACCCCATGATACGCTCTT+TGG | 0.375214 | 3.4:-90362469 | None:intergenic |
| CAGTATCTTGAGGAGAAATA+TGG | 0.378588 | 3.4:+90362150 | MS.gene054645:CDS |
| ATTCCCCATATATAAAGAAT+AGG | 0.385590 | 3.4:-90362186 | None:intergenic |
| CATCAGGCTGTGGGCGTTGT+GGG | 0.398686 | 3.4:+90361897 | MS.gene054645:CDS |
| TTCCCCATATATAAAGAATA+GGG | 0.405017 | 3.4:-90362185 | None:intergenic |
| TAACAGGTCAGAAGCCTCAT+TGG | 0.406626 | 3.4:+90362368 | MS.gene054645:CDS |
| ATATGCTGGGCAATTCATAA+TGG | 0.412058 | 3.4:+90362251 | MS.gene054645:CDS |
| CTACAAGCAGGAGCGATTGC+AGG | 0.422879 | 3.4:+90360155 | MS.gene054645:CDS |
| ATTGGGCGAGATATGTGCTT+TGG | 0.424049 | 3.4:+90360303 | MS.gene054645:CDS |
| ACTATCACTGGCACATATGC+TGG | 0.432961 | 3.4:+90362237 | MS.gene054645:CDS |
| CAATGCAAAGGGAATTTGTA+TGG | 0.433734 | 3.4:-90362424 | None:intergenic |
| TCATGGGGTCCTTTAAGGTT+GGG | 0.434903 | 3.4:+90362481 | MS.gene054645:CDS |
| GCGAGGGTTGGTGTTGCTAC+TGG | 0.441256 | 3.4:+90360242 | MS.gene054645:CDS |
| GTAGAGATGAGTATCCGAAT+TGG | 0.446527 | 3.4:+90360285 | MS.gene054645:CDS |
| AGCACATATCTCGCCCAATT+CGG | 0.447478 | 3.4:-90360299 | None:intergenic |
| ATCATGGGGTCCTTTAAGGT+TGG | 0.455211 | 3.4:+90362480 | MS.gene054645:CDS |
| AGCATAGGATTAGTAAATGC+AGG | 0.456080 | 3.4:+90362126 | MS.gene054645:CDS |
| TAGAGATGAGTATCCGAATT+GGG | 0.457234 | 3.4:+90360286 | MS.gene054645:CDS |
| AGTGATAGTGCTACTTTGTC+CGG | 0.459708 | 3.4:-90362223 | None:intergenic |
| GATCAACTCACCTCAAGAAC+AGG | 0.462311 | 3.4:-90362504 | None:intergenic |
| TTGATGTGGGCTACTTTGAT+GGG | 0.462993 | 3.4:+90360197 | MS.gene054645:CDS |
| TCATCAGGCTGTGGGCGTTG+TGG | 0.463214 | 3.4:+90361896 | MS.gene054645:CDS |
| ACAATAGCTACAATTATAGT+TGG | 0.470178 | 3.4:-90362342 | None:intergenic |
| CATTGCTATGGTTGTTGATG+TGG | 0.472332 | 3.4:+90360183 | MS.gene054645:CDS |
| TTGCAGGGTATTCATTGCTA+TGG | 0.478184 | 3.4:+90360171 | MS.gene054645:CDS |
| TAAGGTTGGGCCTGTTCTTG+AGG | 0.483296 | 3.4:+90362494 | MS.gene054645:CDS |
| CTATGGATGTTCACAGGACC+AGG | 0.485574 | 3.4:+90360083 | None:intergenic |
| GTCTCCAAAGAGCGTATCAT+GGG | 0.486863 | 3.4:+90362465 | MS.gene054645:CDS |
| TTCCCTATTCTTTATATATG+GGG | 0.490873 | 3.4:+90362183 | MS.gene054645:CDS |
| GATTCAATCGCTATCGGCGA+GGG | 0.497858 | 3.4:+90360226 | MS.gene054645:CDS |
| AGATCACCTTCCAAATTCCC+TGG | 0.508544 | 3.4:-90360134 | None:intergenic |
| GAACTACGGAGTGAGGAAGT+TGG | 0.510808 | 3.4:+90361636 | MS.gene054645:CDS |
| TCAACCATTTCTTTAATCGA+AGG | 0.511433 | 3.4:-90362287 | None:intergenic |
| TTTCTATTTCTTGAGAACTA+CGG | 0.515954 | 3.4:+90361622 | MS.gene054645:CDS |
| GGAATTGGGTTACTGGCGGC+CGG | 0.520408 | 3.4:+90362204 | MS.gene054645:CDS |
| TTGTGCGTCACCAAACATCC+AGG | 0.529288 | 3.4:-90361704 | None:intergenic |
| CAATCGCTATCGGCGAGGGT+TGG | 0.530036 | 3.4:+90360230 | MS.gene054645:CDS |
| AGTCTCCAAAGAGCGTATCA+TGG | 0.536848 | 3.4:+90362464 | MS.gene054645:CDS |
| AAGATTGATCCCCATAAGAA+AGG | 0.541186 | 3.4:+90361976 | MS.gene054645:CDS |
| GCTATGCTCATCAAGAATCC+TGG | 0.545092 | 3.4:-90360101 | None:intergenic |
| TTTGGAGACTAATGTGAGAA+GGG | 0.548712 | 3.4:-90362451 | None:intergenic |
| ATTGCTATGGTTGTTGATGT+GGG | 0.550034 | 3.4:+90360184 | MS.gene054645:CDS |
| CTATCACTGGCACATATGCT+GGG | 0.551285 | 3.4:+90362238 | MS.gene054645:CDS |
| TGCACCCGACCTTTCTTATG+GGG | 0.552786 | 3.4:-90361985 | None:intergenic |
| GGACAAAGTAGCACTATCAC+TGG | 0.553077 | 3.4:+90362225 | MS.gene054645:CDS |
| TTGGATCCAGGGAATTTGGA+AGG | 0.555045 | 3.4:+90360128 | MS.gene054645:CDS |
| GGTTGAGAGCATTGATCACT+CGG | 0.555347 | 3.4:+90362304 | MS.gene054645:CDS |
| TGCAGTTCTCATAGCTACCA+TGG | 0.557769 | 3.4:+90361669 | MS.gene054645:CDS |
| TGATCCCCATAAGAAAGGTC+GGG | 0.557824 | 3.4:+90361981 | MS.gene054645:CDS |
| CTTTGGAGACTAATGTGAGA+AGG | 0.557837 | 3.4:-90362452 | None:intergenic |
| CTAGTGGAAAAGAGCTTGTG+AGG | 0.558976 | 3.4:+90361728 | MS.gene054645:CDS |
| ATTGTTGATTCAATCGCTAT+CGG | 0.570420 | 3.4:+90360220 | MS.gene054645:CDS |
| TGCTGGGCAATTCATAATGG+GGG | 0.575837 | 3.4:+90362254 | MS.gene054645:CDS |
| GCTATTCAGATTCTTAGTCG+TGG | 0.577498 | 3.4:+90360386 | MS.gene054645:CDS |
| TTCTTGAGAACTACGGAGTG+AGG | 0.578599 | 3.4:+90361629 | MS.gene054645:CDS |
| TTGGAAGGTGATCTACAAGC+AGG | 0.580203 | 3.4:+90360143 | MS.gene054645:CDS |
| AAAACGATTCATCAGGCTGT+GGG | 0.580396 | 3.4:+90361888 | MS.gene054645:CDS |
| TTGATCCCCATAAGAAAGGT+CGG | 0.580995 | 3.4:+90361980 | MS.gene054645:CDS |
| TAAGAAAGGTCGGGTGCAAG+AGG | 0.581004 | 3.4:+90361990 | MS.gene054645:CDS |
| TTCATTCAAAACATCCAATG+AGG | 0.587564 | 3.4:-90362382 | None:intergenic |
| AGAAGGGGAATCAATGCAAA+GGG | 0.592510 | 3.4:-90362435 | None:intergenic |
| TACAAGCAGGAGCGATTGCA+GGG | 0.597482 | 3.4:+90360156 | MS.gene054645:CDS |
| CTTGAGGAGAAATATGGAGG+AGG | 0.604007 | 3.4:+90362156 | MS.gene054645:CDS |
| GATTGGTGCTGATATTCAAG+AGG | 0.605308 | 3.4:+90360346 | MS.gene054645:CDS |
| ACAAAGCAGGCAAATAGCAT+AGG | 0.606707 | 3.4:+90362111 | MS.gene054645:CDS |
| AAGAAGCTATGGATGTTCAC+AGG | 0.609441 | 3.4:+90360077 | None:intergenic |
| ATGCTGGGCAATTCATAATG+GGG | 0.617730 | 3.4:+90362253 | MS.gene054645:CDS |
| GGTGACTGAAAGTGCAACTG+TGG | 0.617894 | 3.4:-90362037 | None:intergenic |
| TGATTCAATCGCTATCGGCG+AGG | 0.618223 | 3.4:+90360225 | MS.gene054645:CDS |
| GCATAGGATTAGTAAATGCA+GGG | 0.621645 | 3.4:+90362127 | MS.gene054645:CDS |
| TATCTTGAGGAGAAATATGG+AGG | 0.622837 | 3.4:+90362153 | MS.gene054645:CDS |
| GAGAAGGGGAATCAATGCAA+AGG | 0.624992 | 3.4:-90362436 | None:intergenic |
| TAGTGGAAAAGAGCTTGTGA+GGG | 0.626339 | 3.4:+90361729 | MS.gene054645:CDS |
| AAATGCAGGGCAGTATCTTG+AGG | 0.627069 | 3.4:+90362140 | MS.gene054645:CDS |
| TTTGGTGACGCACAACCTAG+TGG | 0.643117 | 3.4:+90361712 | MS.gene054645:CDS |
| CCAGGCAAACGAAAGAGCCA+TGG | 0.651558 | 3.4:-90361686 | None:intergenic |
| ATAAGAACACCAGCCCAAAG+AGG | 0.653164 | 3.4:-90360416 | None:intergenic |
| TTGGAGACTAATGTGAGAAG+GGG | 0.655246 | 3.4:-90362450 | None:intergenic |
| GCTGGGCAATTCATAATGGG+GGG | 0.671671 | 3.4:+90362255 | MS.gene054645:CDS |
| AGTGGAAAAGAGCTTGTGAG+GGG | 0.691219 | 3.4:+90361730 | MS.gene054645:CDS |
| GACAAACAGATTGATCATGA+AGG | 0.711925 | 3.4:-90362058 | None:intergenic |
| ATGGGGAATTGGGTTACTGG+CGG | 0.718976 | 3.4:+90362200 | MS.gene054645:CDS |
| TCTCCAAAGAGCGTATCATG+GGG | 0.719042 | 3.4:+90362466 | MS.gene054645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGATAAAAAATATTTG+AGG | - | chr3.4:90361175-90361194 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAAAAAAACG+TGG | - | chr3.4:90361784-90361803 | None:intergenic | 15.0% |
| !!! | ACTATAAAAAAAGTTTTACA+CGG | + | chr3.4:90361126-90361145 | MS.gene054645:intron | 15.0% |
| !!! | AGTGAAATTAAGTTTTTTTT+GGG | + | chr3.4:90360562-90360581 | MS.gene054645:intron | 15.0% |
| !!! | CACGTTTTTTTTTTTTTTTT+TGG | + | chr3.4:90361782-90361801 | MS.gene054645:intron | 15.0% |
| !!! | TAGTGAAATTAAGTTTTTTT+TGG | + | chr3.4:90360561-90360580 | MS.gene054645:intron | 15.0% |
| !!! | TGTATAAGTTATTTTTATCA+CGG | + | chr3.4:90360615-90360634 | MS.gene054645:intron | 15.0% |
| !!! | TTAATTGTTTTACTCAATTA+TGG | + | chr3.4:90360522-90360541 | MS.gene054645:intron | 15.0% |
| !! | GTTTGGATTAAATTTATGTA+TGG | + | chr3.4:90361420-90361439 | MS.gene054645:intron | 20.0% |
| !! | TTCAAAAATATAGTAAGCTA+AGG | - | chr3.4:90361351-90361370 | None:intergenic | 20.0% |
| !!! | GTGAAATTAAGTTTTTTTTG+GGG | + | chr3.4:90360563-90360582 | MS.gene054645:intron | 20.0% |
| !!! | TAGACCATTTTTTTTCATTT+TGG | + | chr3.4:90360767-90360786 | MS.gene054645:intron | 20.0% |
| !!! | TTTTGTTGTTGATATCATAA+AGG | - | chr3.4:90361384-90361403 | None:intergenic | 20.0% |
| ! | AATGTAGAAATACATTGTGA+GGG | - | chr3.4:90361936-90361955 | None:intergenic | 25.0% |
| ! | ACAATAGCTACAATTATAGT+TGG | - | chr3.4:90362345-90362364 | None:intergenic | 25.0% |
| ! | AGAACTGAAATTGAATTTGT+CGG | + | chr3.4:90361047-90361066 | MS.gene054645:intron | 25.0% |
| ! | ATTCAAAACTCAAACTTGTA+TGG | + | chr3.4:90361275-90361294 | MS.gene054645:intron | 25.0% |
| ! | ATTCCCCATATATAAAGAAT+AGG | - | chr3.4:90362189-90362208 | None:intergenic | 25.0% |
| ! | ATTCTTTATATATGGGGAAT+TGG | + | chr3.4:90362189-90362208 | MS.gene054645:CDS | 25.0% |
| ! | ATTTCTTTAATCGAAGGTTT+AGG | - | chr3.4:90362284-90362303 | None:intergenic | 25.0% |
| ! | CACTCCAAAATGAAAAAAAA+TGG | - | chr3.4:90360774-90360793 | None:intergenic | 25.0% |
| ! | CTTCCCTATTCTTTATATAT+GGG | + | chr3.4:90362182-90362201 | MS.gene054645:CDS | 25.0% |
| ! | GTTCATAATTAGAACTCATA+GGG | + | chr3.4:90360817-90360836 | MS.gene054645:intron | 25.0% |
| ! | TAAACCTTCGATTAAAGAAA+TGG | + | chr3.4:90362283-90362302 | MS.gene054645:CDS | 25.0% |
| ! | TCATGCAAAGCAAAATATAA+CGG | - | chr3.4:90361315-90361334 | None:intergenic | 25.0% |
| ! | TCTTCCCTATTCTTTATATA+TGG | + | chr3.4:90362181-90362200 | MS.gene054645:CDS | 25.0% |
| ! | TGTTCATAATTAGAACTCAT+AGG | + | chr3.4:90360816-90360835 | MS.gene054645:intron | 25.0% |
| ! | TTCATAATTAGAACTCATAG+GGG | + | chr3.4:90360818-90360837 | MS.gene054645:intron | 25.0% |
| ! | TTCCCCATATATAAAGAATA+GGG | - | chr3.4:90362188-90362207 | None:intergenic | 25.0% |
| ! | TTCCCTATTCTTTATATATG+GGG | + | chr3.4:90362183-90362202 | MS.gene054645:CDS | 25.0% |
| ! | TTCTTTATATATGGGGAATT+GGG | + | chr3.4:90362190-90362209 | MS.gene054645:CDS | 25.0% |
| ! | TTGTAGCTATTGTTTATAAC+AGG | + | chr3.4:90362352-90362371 | MS.gene054645:CDS | 25.0% |
| ! | TTTGAATATAGTCAAGAGTA+AGG | - | chr3.4:90361262-90361281 | None:intergenic | 25.0% |
| !! | AAAAAAAGTTTTACACGGAT+GGG | + | chr3.4:90361131-90361150 | MS.gene054645:intron | 25.0% |
| !! | ACTTTATTGTTATTGTCTTC+AGG | + | chr3.4:90361519-90361538 | MS.gene054645:intron | 25.0% |
| !! | ATGAGTTCTAATTATGAACA+AGG | - | chr3.4:90360816-90360835 | None:intergenic | 25.0% |
| !! | ATTCAATTATGCATGTTTTG+AGG | + | chr3.4:90360483-90360502 | MS.gene054645:intron | 25.0% |
| !! | TAAAAAAAGTTTTACACGGA+TGG | + | chr3.4:90361130-90361149 | MS.gene054645:intron | 25.0% |
| !! | TTTCTATTTCTTGAGAACTA+CGG | + | chr3.4:90361622-90361641 | MS.gene054645:CDS | 25.0% |
| !!! | AAATTAAGTTTTTTTTGGGG+TGG | + | chr3.4:90360566-90360585 | MS.gene054645:intron | 25.0% |
| !!! | AACTTTTTCATAAGCTATCA+TGG | + | chr3.4:90360655-90360674 | MS.gene054645:intron | 25.0% |
| !!! | ACAAAAGTTCTGAAATTGAA+TGG | + | chr3.4:90361398-90361417 | MS.gene054645:intron | 25.0% |
| !!! | CAATATTTTTGAACATTTCC+TGG | + | chr3.4:90361470-90361489 | MS.gene054645:intron | 25.0% |
| !!! | CATTTTTTTTCATTTTGGAG+TGG | + | chr3.4:90360772-90360791 | MS.gene054645:intron | 25.0% |
| !!! | TTTTACTCAATTATGGATTG+AGG | + | chr3.4:90360529-90360548 | MS.gene054645:intron | 25.0% |
| ACCAAAATACACTAAAGTCA+CGG | - | chr3.4:90360874-90360893 | None:intergenic | 30.0% | |
| CAGTTCTGTGATATAATTAC+TGG | - | chr3.4:90361238-90361257 | None:intergenic | 30.0% | |
| GAATGTAGAAATACATTGTG+AGG | - | chr3.4:90361937-90361956 | None:intergenic | 30.0% | |
| TCAACCATTTCTTTAATCGA+AGG | - | chr3.4:90362290-90362309 | None:intergenic | 30.0% | |
| TGAATGAAAAGAGTGATGAT+AGG | - | chr3.4:90360468-90360487 | None:intergenic | 30.0% | |
| TTCATTCAAAACATCCAATG+AGG | - | chr3.4:90362385-90362404 | None:intergenic | 30.0% | |
| TTCTTATTACTGCTTCTGAT+TGG | + | chr3.4:90360432-90360451 | MS.gene054645:CDS | 30.0% | |
| ! | AAAAAAGTTTTACACGGATG+GGG | + | chr3.4:90361132-90361151 | MS.gene054645:intron | 30.0% |
| ! | GTTTTTGCTAAGGGTTTTTA+TGG | + | chr3.4:90362087-90362106 | MS.gene054645:CDS | 30.0% |
| ! | TGTTATTGTCTTCAGGTTAT+TGG | + | chr3.4:90361526-90361545 | MS.gene054645:intron | 30.0% |
| !! | AGTTCTGAAATTGAATGGTT+TGG | + | chr3.4:90361403-90361422 | MS.gene054645:intron | 30.0% |
| !! | ATTGTTGATTCAATCGCTAT+CGG | + | chr3.4:90360220-90360239 | MS.gene054645:CDS | 30.0% |
| !! | CATTGGATGTTTTGAATGAA+TGG | + | chr3.4:90362385-90362404 | MS.gene054645:CDS | 30.0% |
| !! | CTATCTTGATTCTAGTTTCT+AGG | + | chr3.4:90361189-90361208 | MS.gene054645:intron | 30.0% |
| AAAAGAGTGATGATAGGCAT+AGG | - | chr3.4:90360462-90360481 | None:intergenic | 35.0% | |
| AAGATTGATCCCCATAAGAA+AGG | + | chr3.4:90361976-90361995 | MS.gene054645:CDS | 35.0% | |
| AATCTAAACATGCGATCTAG+TGG | + | chr3.4:90360737-90360756 | MS.gene054645:intron | 35.0% | |
| ACTAAAATCAGTTAACAGCC+AGG | - | chr3.4:90361092-90361111 | None:intergenic | 35.0% | |
| AGAGAGAATAAAGCACAGTT+AGG | - | chr3.4:90361583-90361602 | None:intergenic | 35.0% | |
| AGGTGGTTAAACATGAAAGT+GGG | - | chr3.4:90361563-90361582 | None:intergenic | 35.0% | |
| ATATGCTGGGCAATTCATAA+TGG | + | chr3.4:90362251-90362270 | MS.gene054645:CDS | 35.0% | |
| ATTAGAACTCATAGGGGATT+CGG | + | chr3.4:90360824-90360843 | MS.gene054645:intron | 35.0% | |
| ATTGCTATGGTTGTTGATGT+GGG | + | chr3.4:90360184-90360203 | MS.gene054645:CDS | 35.0% | |
| CAATGCAAAGGGAATTTGTA+TGG | - | chr3.4:90362427-90362446 | None:intergenic | 35.0% | |
| CAGTATCTTGAGGAGAAATA+TGG | + | chr3.4:90362150-90362169 | MS.gene054645:CDS | 35.0% | |
| GAATCAAAATACCTACCAGA+AGG | - | chr3.4:90361854-90361873 | None:intergenic | 35.0% | |
| GACAAACAGATTGATCATGA+AGG | - | chr3.4:90362061-90362080 | None:intergenic | 35.0% | |
| GCTGATATTCAAGAGGTTAT+TGG | + | chr3.4:90360353-90360372 | MS.gene054645:CDS | 35.0% | |
| TAGAGATGAGTATCCGAATT+GGG | + | chr3.4:90360286-90360305 | MS.gene054645:CDS | 35.0% | |
| TAGCTCAAAAACGATTCATC+AGG | + | chr3.4:90361881-90361900 | MS.gene054645:CDS | 35.0% | |
| TAGGTGGTTAAACATGAAAG+TGG | - | chr3.4:90361564-90361583 | None:intergenic | 35.0% | |
| TATCTTGAGGAGAAATATGG+AGG | + | chr3.4:90362153-90362172 | MS.gene054645:CDS | 35.0% | |
| TATGCTGGGCAATTCATAAT+GGG | + | chr3.4:90362252-90362271 | MS.gene054645:CDS | 35.0% | |
| TGAAATCAAGAAATGAAGCC+AGG | - | chr3.4:90361491-90361510 | None:intergenic | 35.0% | |
| TTTGGAGACTAATGTGAGAA+GGG | - | chr3.4:90362454-90362473 | None:intergenic | 35.0% | |
| ! | ACCGTGACTTTAGTGTATTT+TGG | + | chr3.4:90360870-90360889 | MS.gene054645:intron | 35.0% |
| ! | AGCATAGGATTAGTAAATGC+AGG | + | chr3.4:90362126-90362145 | MS.gene054645:CDS | 35.0% |
| ! | CTTGATGAGCATAGCATTTT+TGG | + | chr3.4:90360109-90360128 | MS.gene054645:CDS | 35.0% |
| ! | GAGATATGTGCTTTGGTTTA+TGG | + | chr3.4:90360310-90360329 | MS.gene054645:CDS | 35.0% |
| ! | GCATAGGATTAGTAAATGCA+GGG | + | chr3.4:90362127-90362146 | MS.gene054645:CDS | 35.0% |
| ! | GTCACAACAGTTTTTGCTAA+GGG | + | chr3.4:90362078-90362097 | MS.gene054645:CDS | 35.0% |
| ! | TGTCACAACAGTTTTTGCTA+AGG | + | chr3.4:90362077-90362096 | MS.gene054645:CDS | 35.0% |
| !! | ATCGTTTTTGAGCTAAGTCT+TGG | - | chr3.4:90361876-90361895 | None:intergenic | 35.0% |
| !! | ATTTTTGGATCCAGGGAATT+TGG | + | chr3.4:90360124-90360143 | MS.gene054645:CDS | 35.0% |
| AAAAACGATTCATCAGGCTG+TGG | + | chr3.4:90361887-90361906 | MS.gene054645:CDS | 40.0% | |
| AAAACGATTCATCAGGCTGT+GGG | + | chr3.4:90361888-90361907 | MS.gene054645:CDS | 40.0% | |
| AAGCTATCATGGAGAGCTTA+TGG | + | chr3.4:90360666-90360685 | MS.gene054645:intron | 40.0% | |
| ACAAAGCAGGCAAATAGCAT+AGG | + | chr3.4:90362111-90362130 | MS.gene054645:CDS | 40.0% | |
| AGAAGGGGAATCAATGCAAA+GGG | - | chr3.4:90362438-90362457 | None:intergenic | 40.0% | |
| AGTTGCAGCTCATGAAAATC+CGG | - | chr3.4:90360988-90361007 | None:intergenic | 40.0% | |
| ATGCTGGGCAATTCATAATG+GGG | + | chr3.4:90362253-90362272 | MS.gene054645:CDS | 40.0% | |
| ATTCTGCTTTAGTGCAGTCA+AGG | + | chr3.4:90361953-90361972 | MS.gene054645:intron | 40.0% | |
| CATTGCTATGGTTGTTGATG+TGG | + | chr3.4:90360183-90360202 | MS.gene054645:CDS | 40.0% | |
| CTAAGTTTCCTGTTAGTACC+TGG | + | chr3.4:90361071-90361090 | MS.gene054645:intron | 40.0% | |
| GAGAATAAAGCACAGTTAGG+TGG | - | chr3.4:90361580-90361599 | None:intergenic | 40.0% | |
| GCTATTCAGATTCTTAGTCG+TGG | + | chr3.4:90360386-90360405 | MS.gene054645:CDS | 40.0% | |
| GGTTAAACATGAAAGTGGGA+TGG | - | chr3.4:90361559-90361578 | None:intergenic | 40.0% | |
| GTAGAGATGAGTATCCGAAT+TGG | + | chr3.4:90360285-90360304 | MS.gene054645:CDS | 40.0% | |
| GTTATGCCAGTGGGATTATA+GGG | - | chr3.4:90361820-90361839 | None:intergenic | 40.0% | |
| TAACCTGTGTTTGTTCCTTC+TGG | + | chr3.4:90361836-90361855 | MS.gene054645:intron | 40.0% | |
| TAGTGGAAAAGAGCTTGTGA+GGG | + | chr3.4:90361729-90361748 | MS.gene054645:CDS | 40.0% | |
| TATATGGGGAATTGGGTTAC+TGG | + | chr3.4:90362197-90362216 | MS.gene054645:CDS | 40.0% | |
| TGCAACTTGCAAGGAAAGTT+TGG | + | chr3.4:90361001-90361020 | MS.gene054645:intron | 40.0% | |
| TTGATCCCCATAAGAAAGGT+CGG | + | chr3.4:90361980-90361999 | MS.gene054645:CDS | 40.0% | |
| TTGGAGACTAATGTGAGAAG+GGG | - | chr3.4:90362453-90362472 | None:intergenic | 40.0% | |
| ! | ATGGCTGAACTTGCTTTGAT+TGG | + | chr3.4:90360329-90360348 | MS.gene054645:CDS | 40.0% |
| ! | CTTTGGAGACTAATGTGAGA+AGG | - | chr3.4:90362455-90362474 | None:intergenic | 40.0% |
| ! | GGGTTTTTATGGTACAAAGC+AGG | + | chr3.4:90362098-90362117 | MS.gene054645:CDS | 40.0% |
| ! | TTGATGTGGGCTACTTTGAT+GGG | + | chr3.4:90360197-90360216 | MS.gene054645:CDS | 40.0% |
| ! | TTGCAGGGTATTCATTGCTA+TGG | + | chr3.4:90360171-90360190 | MS.gene054645:CDS | 40.0% |
| ! | TTGTCTTCAGGTTATTGGCT+TGG | + | chr3.4:90361531-90361550 | MS.gene054645:intron | 40.0% |
| !! | AGCATAGCATTTTTGGATCC+AGG | + | chr3.4:90360116-90360135 | MS.gene054645:CDS | 40.0% |
| !! | AGTGATAGTGCTACTTTGTC+CGG | - | chr3.4:90362226-90362245 | None:intergenic | 40.0% |
| !! | GATTGGTGCTGATATTCAAG+AGG | + | chr3.4:90360346-90360365 | MS.gene054645:CDS | 40.0% |
| !! | GCATAGCATTTTTGGATCCA+GGG | + | chr3.4:90360117-90360136 | MS.gene054645:CDS | 40.0% |
| !! | GTCAGGATTTGCTACCTTTA+AGG | - | chr3.4:90360965-90360984 | None:intergenic | 40.0% |
| AAAGGTAGCAAATCCTGACC+CGG | + | chr3.4:90360966-90360985 | MS.gene054645:intron | 45.0% | |
| AAATGCAGGGCAGTATCTTG+AGG | + | chr3.4:90362140-90362159 | MS.gene054645:CDS | 45.0% | |
| AAGAACAGGCCCAACCTTAA+AGG | - | chr3.4:90362493-90362512 | None:intergenic | 45.0% | |
| ACAAACACAGGTTATGCCAG+TGG | - | chr3.4:90361830-90361849 | None:intergenic | 45.0% | |
| ACTATCACTGGCACATATGC+TGG | + | chr3.4:90362237-90362256 | MS.gene054645:CDS | 45.0% | |
| AGATCACCTTCCAAATTCCC+TGG | - | chr3.4:90360137-90360156 | None:intergenic | 45.0% | |
| AGCACATATCTCGCCCAATT+CGG | - | chr3.4:90360302-90360321 | None:intergenic | 45.0% | |
| AGTGGAAAAGAGCTTGTGAG+GGG | + | chr3.4:90361730-90361749 | MS.gene054645:CDS | 45.0% | |
| ATAAGAACACCAGCCCAAAG+AGG | - | chr3.4:90360419-90360438 | None:intergenic | 45.0% | |
| ATCTCTCCCTATAATCCCAC+TGG | + | chr3.4:90361811-90361830 | MS.gene054645:intron | 45.0% | |
| ATTGGGCGAGATATGTGCTT+TGG | + | chr3.4:90360303-90360322 | MS.gene054645:CDS | 45.0% | |
| CAAACACAGGTTATGCCAGT+GGG | - | chr3.4:90361829-90361848 | None:intergenic | 45.0% | |
| CAACGACTTTCCTGCCTTAA+AGG | + | chr3.4:90360948-90360967 | MS.gene054645:intron | 45.0% | |
| CTAAACATGCGATCTAGTGG+AGG | + | chr3.4:90360740-90360759 | MS.gene054645:intron | 45.0% | |
| CTACCAGAAGGAACAAACAC+AGG | - | chr3.4:90361842-90361861 | None:intergenic | 45.0% | |
| CTAGTGGAAAAGAGCTTGTG+AGG | + | chr3.4:90361728-90361747 | MS.gene054645:CDS | 45.0% | |
| CTATCACTGGCACATATGCT+GGG | + | chr3.4:90362238-90362257 | MS.gene054645:CDS | 45.0% | |
| CTGTGTTTGTTCCTTCTGGT+AGG | + | chr3.4:90361840-90361859 | MS.gene054645:intron | 45.0% | |
| CTTGAGGAGAAATATGGAGG+AGG | + | chr3.4:90362156-90362175 | MS.gene054645:CDS | 45.0% | |
| CTTTCGTTTGCCTGGATGTT+TGG | + | chr3.4:90361694-90361713 | MS.gene054645:CDS | 45.0% | |
| GAGAAGGGGAATCAATGCAA+AGG | - | chr3.4:90362439-90362458 | None:intergenic | 45.0% | |
| GCTATGCTCATCAAGAATCC+TGG | - | chr3.4:90360104-90360123 | None:intergenic | 45.0% | |
| GGACAAAGTAGCACTATCAC+TGG | + | chr3.4:90362225-90362244 | MS.gene054645:CDS | 45.0% | |
| GGTTATGCCAGTGGGATTAT+AGG | - | chr3.4:90361821-90361840 | None:intergenic | 45.0% | |
| GTTAACAGCCAGGTACTAAC+AGG | - | chr3.4:90361082-90361101 | None:intergenic | 45.0% | |
| GTTGCAGCTCATGAAAATCC+GGG | - | chr3.4:90360987-90361006 | None:intergenic | 45.0% | |
| TAACAGGTCAGAAGCCTCAT+TGG | + | chr3.4:90362368-90362387 | MS.gene054645:CDS | 45.0% | |
| TGATCCCCATAAGAAAGGTC+GGG | + | chr3.4:90361981-90362000 | MS.gene054645:CDS | 45.0% | |
| TGCAGTTCTCATAGCTACCA+TGG | + | chr3.4:90361669-90361688 | MS.gene054645:CDS | 45.0% | |
| TGCTGGGCAATTCATAATGG+GGG | + | chr3.4:90362254-90362273 | MS.gene054645:CDS | 45.0% | |
| TTCATGAGCTGCAACTTGCA+AGG | + | chr3.4:90360992-90361011 | MS.gene054645:intron | 45.0% | |
| TTCTTGAGAACTACGGAGTG+AGG | + | chr3.4:90361629-90361648 | MS.gene054645:CDS | 45.0% | |
| TTGCACCCGACCTTTCTTAT+GGG | - | chr3.4:90361989-90362008 | None:intergenic | 45.0% | |
| TTGGAAGGTGATCTACAAGC+AGG | + | chr3.4:90360143-90360162 | MS.gene054645:CDS | 45.0% | |
| TTGGATCCAGGGAATTTGGA+AGG | + | chr3.4:90360128-90360147 | MS.gene054645:CDS | 45.0% | |
| ! | AGTCTCCAAAGAGCGTATCA+TGG | + | chr3.4:90362464-90362483 | MS.gene054645:CDS | 45.0% |
| ! | CTCACAAGCTCTTTTCCACT+AGG | - | chr3.4:90361730-90361749 | None:intergenic | 45.0% |
| ! | GTCTCCAAAGAGCGTATCAT+GGG | + | chr3.4:90362465-90362484 | MS.gene054645:CDS | 45.0% |
| ! | GTTGATGTGGGCTACTTTGA+TGG | + | chr3.4:90360196-90360215 | MS.gene054645:CDS | 45.0% |
| ! | TCGTGGTGTTTTGCCTCTTT+GGG | + | chr3.4:90360403-90360422 | MS.gene054645:CDS | 45.0% |
| ! | TCTCCAAAGAGCGTATCATG+GGG | + | chr3.4:90362466-90362485 | MS.gene054645:CDS | 45.0% |
| !! | ATCATGGGGTCCTTTAAGGT+TGG | + | chr3.4:90362480-90362499 | MS.gene054645:CDS | 45.0% |
| !! | GGATTTGCTACCTTTAAGGC+AGG | - | chr3.4:90360961-90360980 | None:intergenic | 45.0% |
| !! | GGTTGAGAGCATTGATCACT+CGG | + | chr3.4:90362304-90362323 | MS.gene054645:CDS | 45.0% |
| !! | TCATGGGGTCCTTTAAGGTT+GGG | + | chr3.4:90362481-90362500 | MS.gene054645:CDS | 45.0% |
| AGCTCATGAAAATCCGGGTC+AGG | - | chr3.4:90360982-90361001 | None:intergenic | 50.0% | |
| ATGGGGAATTGGGTTACTGG+CGG | + | chr3.4:90362200-90362219 | MS.gene054645:CDS | 50.0% | |
| CTTGCACCCGACCTTTCTTA+TGG | - | chr3.4:90361990-90362009 | None:intergenic | 50.0% | |
| GAACTACGGAGTGAGGAAGT+TGG | + | chr3.4:90361636-90361655 | MS.gene054645:CDS | 50.0% | |
| GATTCAATCGCTATCGGCGA+GGG | + | chr3.4:90360226-90360245 | MS.gene054645:CDS | 50.0% | |
| GCGTATCATGGGGTCCTTTA+AGG | + | chr3.4:90362476-90362495 | MS.gene054645:CDS | 50.0% | |
| TAAGAAAGGTCGGGTGCAAG+AGG | + | chr3.4:90361990-90362009 | MS.gene054645:CDS | 50.0% | |
| TACAAGCAGGAGCGATTGCA+GGG | + | chr3.4:90360156-90360175 | MS.gene054645:CDS | 50.0% | |
| TGATTCAATCGCTATCGGCG+AGG | + | chr3.4:90360225-90360244 | MS.gene054645:CDS | 50.0% | |
| TGCACCCGACCTTTCTTATG+GGG | - | chr3.4:90361988-90362007 | None:intergenic | 50.0% | |
| TTGTGCGTCACCAAACATCC+AGG | - | chr3.4:90361707-90361726 | None:intergenic | 50.0% | |
| ! | GCTGGGCAATTCATAATGGG+GGG | + | chr3.4:90362255-90362274 | MS.gene054645:CDS | 50.0% |
| ! | GGTGACTGAAAGTGCAACTG+TGG | - | chr3.4:90362040-90362059 | None:intergenic | 50.0% |
| ! | GTCGTGGTGTTTTGCCTCTT+TGG | + | chr3.4:90360402-90360421 | MS.gene054645:CDS | 50.0% |
| !! | CATAGGGGATTCGGTGACTT+TGG | + | chr3.4:90360833-90360852 | MS.gene054645:intron | 50.0% |
| !! | TTTGGTGACGCACAACCTAG+TGG | + | chr3.4:90361712-90361731 | MS.gene054645:CDS | 50.0% |
| CCAGGCAAACGAAAGAGCCA+TGG | - | chr3.4:90361689-90361708 | None:intergenic | 55.0% | |
| CCATGGCTCTTTCGTTTGCC+TGG | + | chr3.4:90361686-90361705 | MS.gene054645:CDS | 55.0% | |
| CTACAAGCAGGAGCGATTGC+AGG | + | chr3.4:90360155-90360174 | MS.gene054645:CDS | 55.0% | |
| GGACCCCATGATACGCTCTT+TGG | - | chr3.4:90362472-90362491 | None:intergenic | 55.0% | |
| ! | GGTGTTTTGCCTCTTTGGGC+TGG | + | chr3.4:90360407-90360426 | MS.gene054645:CDS | 55.0% |
| !! | AGGGGATTCGGTGACTTTGG+TGG | + | chr3.4:90360836-90360855 | MS.gene054645:intron | 55.0% |
| !! | ATTCGGTGACTTTGGTGGCG+GGG | + | chr3.4:90360841-90360860 | MS.gene054645:intron | 55.0% |
| !! | GATTCGGTGACTTTGGTGGC+GGG | + | chr3.4:90360840-90360859 | MS.gene054645:intron | 55.0% |
| !! | GGATTCGGTGACTTTGGTGG+CGG | + | chr3.4:90360839-90360858 | MS.gene054645:intron | 55.0% |
| CAATCGCTATCGGCGAGGGT+TGG | + | chr3.4:90360230-90360249 | MS.gene054645:CDS | 60.0% | |
| GGAATTGGGTTACTGGCGGC+CGG | + | chr3.4:90362204-90362223 | MS.gene054645:CDS | 60.0% | |
| ! | CATCAGGCTGTGGGCGTTGT+GGG | + | chr3.4:90361897-90361916 | MS.gene054645:CDS | 60.0% |
| ! | TCATCAGGCTGTGGGCGTTG+TGG | + | chr3.4:90361896-90361915 | MS.gene054645:CDS | 60.0% |
| !! | GCGAGGGTTGGTGTTGCTAC+TGG | + | chr3.4:90360242-90360261 | MS.gene054645:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90360089 | 90362515 | 90360089 | ID=MS.gene054645 |
| chr3.4 | mRNA | 90360089 | 90362515 | 90360089 | ID=MS.gene054645.t1;Parent=MS.gene054645 |
| chr3.4 | exon | 90360089 | 90360453 | 90360089 | ID=MS.gene054645.t1.exon1;Parent=MS.gene054645.t1 |
| chr3.4 | CDS | 90360089 | 90360453 | 90360089 | ID=cds.MS.gene054645.t1;Parent=MS.gene054645.t1 |
| chr3.4 | exon | 90361615 | 90361751 | 90361615 | ID=MS.gene054645.t1.exon2;Parent=MS.gene054645.t1 |
| chr3.4 | CDS | 90361615 | 90361751 | 90361615 | ID=cds.MS.gene054645.t1;Parent=MS.gene054645.t1 |
| chr3.4 | exon | 90361862 | 90361923 | 90361862 | ID=MS.gene054645.t1.exon3;Parent=MS.gene054645.t1 |
| chr3.4 | CDS | 90361862 | 90361923 | 90361862 | ID=cds.MS.gene054645.t1;Parent=MS.gene054645.t1 |
| chr3.4 | exon | 90361970 | 90362515 | 90361970 | ID=MS.gene054645.t1.exon4;Parent=MS.gene054645.t1 |
| chr3.4 | CDS | 90361970 | 90362515 | 90361970 | ID=cds.MS.gene054645.t1;Parent=MS.gene054645.t1 |
| Gene Sequence |
| Protein sequence |
