Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054644.t1 | XP_013461743.1 | 99.2 | 385 | 3 | 0 | 1 | 385 | 71 | 455 | 1.60E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054644.t1 | Q9C6B2 | 88.8 | 385 | 43 | 0 | 1 | 385 | 70 | 454 | 1.5e-195 | 683.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054644.t1 | G8A2C0 | 99.2 | 385 | 3 | 0 | 1 | 385 | 71 | 455 | 1.2e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene054644 | 0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene054644 | MS.gene054645 | 0.990621 | 1.64E-183 | -1.69E-46 |
| MS.gene054644 | MS.gene32907 | 0.839672 | 1.38E-57 | -1.69E-46 |
| MS.gene054644 | MS.gene60550 | 0.802666 | 5.04E-49 | -1.69E-46 |
| MS.gene054644 | MS.gene60551 | 0.823058 | 1.70E-53 | -1.69E-46 |
| MS.gene054644 | MS.gene75507 | 0.806284 | 8.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054644.t1 | MTR_3g102620 | 99.221 | 385 | 3 | 0 | 1 | 385 | 71 | 455 | 0.0 | 773 |
| MS.gene054644.t1 | MTR_5g016270 | 83.377 | 385 | 64 | 0 | 1 | 385 | 57 | 441 | 0.0 | 670 |
| MS.gene054644.t1 | MTR_4g095075 | 82.857 | 385 | 66 | 0 | 1 | 385 | 58 | 442 | 0.0 | 660 |
| MS.gene054644.t1 | MTR_8g028050 | 79.481 | 385 | 79 | 0 | 1 | 385 | 88 | 472 | 0.0 | 640 |
| MS.gene054644.t1 | MTR_3g088440 | 44.560 | 386 | 198 | 7 | 2 | 379 | 40 | 417 | 6.60e-99 | 304 |
| MS.gene054644.t1 | MTR_2g104990 | 44.094 | 381 | 201 | 6 | 2 | 376 | 51 | 425 | 4.98e-98 | 302 |
| MS.gene054644.t1 | MTR_2g104990 | 44.094 | 381 | 201 | 6 | 2 | 376 | 76 | 450 | 1.05e-97 | 302 |
| MS.gene054644.t1 | MTR_3g088460 | 45.078 | 386 | 196 | 7 | 2 | 379 | 47 | 424 | 2.14e-97 | 300 |
| MS.gene054644.t1 | MTR_3g088440 | 45.559 | 349 | 176 | 6 | 2 | 342 | 40 | 382 | 2.44e-94 | 288 |
| MS.gene054644.t1 | MTR_3g088460 | 44.715 | 369 | 188 | 7 | 2 | 362 | 47 | 407 | 1.73e-93 | 286 |
| MS.gene054644.t1 | MTR_0041s0030 | 27.013 | 385 | 255 | 10 | 5 | 385 | 38 | 400 | 1.07e-27 | 115 |
| MS.gene054644.t1 | MTR_2g062640 | 27.168 | 346 | 203 | 11 | 41 | 385 | 3 | 300 | 1.97e-22 | 98.2 |
| MS.gene054644.t1 | MTR_4g094602 | 39.726 | 146 | 75 | 5 | 169 | 304 | 1 | 143 | 7.91e-19 | 82.8 |
| MS.gene054644.t1 | MTR_2g062640 | 24.923 | 325 | 227 | 12 | 64 | 385 | 22 | 332 | 4.20e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054644.t1 | AT1G47240 | 88.831 | 385 | 43 | 0 | 1 | 385 | 70 | 454 | 0.0 | 702 |
| MS.gene054644.t1 | AT2G23150 | 83.377 | 385 | 64 | 0 | 1 | 385 | 58 | 442 | 0.0 | 667 |
| MS.gene054644.t1 | AT5G67330 | 78.442 | 385 | 83 | 0 | 1 | 385 | 54 | 438 | 0.0 | 640 |
| MS.gene054644.t1 | AT4G18790 | 78.646 | 384 | 82 | 0 | 2 | 385 | 73 | 456 | 0.0 | 610 |
| MS.gene054644.t1 | AT1G80830 | 44.216 | 389 | 202 | 8 | 2 | 383 | 49 | 429 | 4.02e-96 | 297 |
| MS.gene054644.t1 | AT1G80830 | 44.216 | 389 | 202 | 8 | 2 | 383 | 49 | 429 | 4.02e-96 | 297 |
| MS.gene054644.t1 | AT1G15960 | 44.125 | 383 | 200 | 7 | 2 | 377 | 41 | 416 | 6.41e-96 | 296 |
| MS.gene054644.t1 | AT5G03280 | 27.226 | 393 | 253 | 12 | 5 | 385 | 24 | 395 | 3.94e-28 | 117 |
Find 105 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCCTATTCTTTATATA+TGG | 0.142218 | 3.4:+90315048 | MS.gene054644:CDS |
| GAGATATGTGCTTTGGTTTA+TGG | 0.173322 | 3.4:+90313183 | MS.gene054644:CDS |
| GCGTATCATGGGGTCCTTTA+AGG | 0.176367 | 3.4:+90315343 | MS.gene054644:CDS |
| CTTGCACCCGACCTTTCTTA+TGG | 0.228027 | 3.4:-90314854 | None:intergenic |
| ATTCTTTATATATGGGGAAT+TGG | 0.260472 | 3.4:+90315056 | MS.gene054644:CDS |
| AAGAACAGGCCCAACCTTAA+AGG | 0.269338 | 3.4:-90315357 | None:intergenic |
| CTTTCGTTTGCCTGGATGTT+TGG | 0.287698 | 3.4:+90314563 | MS.gene054644:CDS |
| TATATGGGGAATTGGGTTAC+TGG | 0.300843 | 3.4:+90315064 | MS.gene054644:CDS |
| GCTGATATTCAAGAGGTTAT+TGG | 0.317388 | 3.4:+90313226 | MS.gene054644:CDS |
| TTGCACCCGACCTTTCTTAT+GGG | 0.317887 | 3.4:-90314853 | None:intergenic |
| CTTCCCTATTCTTTATATAT+GGG | 0.327610 | 3.4:+90315049 | MS.gene054644:CDS |
| ATGGCTGAACTTGCTTTGAT+TGG | 0.334674 | 3.4:+90313202 | MS.gene054644:CDS |
| ATTTCTTTAATCGAAGGTTT+AGG | 0.343077 | 3.4:-90315148 | None:intergenic |
| TTCTTTATATATGGGGAATT+GGG | 0.344410 | 3.4:+90315057 | MS.gene054644:CDS |
| TAAACCTTCGATTAAAGAAA+TGG | 0.345809 | 3.4:+90315150 | MS.gene054644:CDS |
| CCATGGCTCTTTCGTTTGCC+TGG | 0.345997 | 3.4:+90314555 | MS.gene054644:CDS |
| TTGTAGCTATTGTTTATAAC+AGG | 0.347401 | 3.4:+90315219 | MS.gene054644:CDS |
| GTTGATGTGGGCTACTTTGA+TGG | 0.363803 | 3.4:+90313069 | MS.gene054644:CDS |
| TATGCTGGGCAATTCATAAT+GGG | 0.372018 | 3.4:+90315119 | MS.gene054644:CDS |
| TTCTTATTACTGCTTCTGAT+TGG | 0.372846 | 3.4:+90313305 | MS.gene054644:CDS |
| GGACCCCATGATACGCTCTT+TGG | 0.375214 | 3.4:-90315336 | None:intergenic |
| CAGTATCTTGAGGAGAAATA+TGG | 0.378588 | 3.4:+90315017 | MS.gene054644:CDS |
| ATTCCCCATATATAAAGAAT+AGG | 0.385590 | 3.4:-90315053 | None:intergenic |
| CATCAGGCTGTGGGCGTTGT+GGG | 0.398686 | 3.4:+90314765 | MS.gene054644:CDS |
| TTCCCCATATATAAAGAATA+GGG | 0.405017 | 3.4:-90315052 | None:intergenic |
| TAACAGGTCAGAAGCCTCAT+TGG | 0.406626 | 3.4:+90315235 | MS.gene054644:CDS |
| ATATGCTGGGCAATTCATAA+TGG | 0.412058 | 3.4:+90315118 | MS.gene054644:CDS |
| CTACAAGCAGGAGCGATTGC+AGG | 0.422879 | 3.4:+90313028 | MS.gene054644:CDS |
| ATTGGGCGAGATATGTGCTT+TGG | 0.424049 | 3.4:+90313176 | MS.gene054644:CDS |
| ACTATCACTGGCACATATGC+TGG | 0.432961 | 3.4:+90315104 | MS.gene054644:CDS |
| CAATGCAAAGGGAATTTGTA+TGG | 0.433734 | 3.4:-90315291 | None:intergenic |
| TCATGGGGTCCTTTAAGGTT+GGG | 0.434903 | 3.4:+90315348 | MS.gene054644:CDS |
| GCGAGGGTTGGTGTTGCTAC+TGG | 0.441256 | 3.4:+90313115 | MS.gene054644:CDS |
| GTAGAGATGAGTATCCGAAT+TGG | 0.446527 | 3.4:+90313158 | MS.gene054644:CDS |
| AGCACATATCTCGCCCAATT+CGG | 0.447478 | 3.4:-90313172 | None:intergenic |
| ATCATGGGGTCCTTTAAGGT+TGG | 0.455211 | 3.4:+90315347 | MS.gene054644:CDS |
| AGCATAGGATTAGTAAATGC+AGG | 0.456080 | 3.4:+90314993 | MS.gene054644:CDS |
| TAGAGATGAGTATCCGAATT+GGG | 0.457234 | 3.4:+90313159 | MS.gene054644:CDS |
| AGTGATAGTGCTACTTTGTC+CGG | 0.459708 | 3.4:-90315090 | None:intergenic |
| GATCAACTCACCTCAAGAAC+AGG | 0.462311 | 3.4:-90315371 | None:intergenic |
| TTGATGTGGGCTACTTTGAT+GGG | 0.462993 | 3.4:+90313070 | MS.gene054644:CDS |
| TCATCAGGCTGTGGGCGTTG+TGG | 0.463214 | 3.4:+90314764 | MS.gene054644:CDS |
| ACAATAGCTACAATTATAGT+TGG | 0.470178 | 3.4:-90315209 | None:intergenic |
| CATTGCTATGGTTGTTGATG+TGG | 0.472332 | 3.4:+90313056 | MS.gene054644:CDS |
| TTGCAGGGTATTCATTGCTA+TGG | 0.478184 | 3.4:+90313044 | MS.gene054644:CDS |
| TAAGGTTGGGCCTGTTCTTG+AGG | 0.483296 | 3.4:+90315361 | MS.gene054644:CDS |
| CTATGGATGTTCACAGGACC+AGG | 0.485574 | 3.4:+90312956 | None:intergenic |
| GTCTCCAAAGAGCGTATCAT+GGG | 0.486863 | 3.4:+90315332 | MS.gene054644:CDS |
| TTCCCTATTCTTTATATATG+GGG | 0.490873 | 3.4:+90315050 | MS.gene054644:CDS |
| GATTCAATCGCTATCGGCGA+GGG | 0.497858 | 3.4:+90313099 | MS.gene054644:CDS |
| AGATCACCTTCCAAATTCCC+TGG | 0.508544 | 3.4:-90313007 | None:intergenic |
| GAACTACGGAGTGAGGAAGT+TGG | 0.510808 | 3.4:+90314505 | MS.gene054644:CDS |
| TCAACCATTTCTTTAATCGA+AGG | 0.511433 | 3.4:-90315154 | None:intergenic |
| TTTCTATTTCTTGAGAACTA+CGG | 0.515954 | 3.4:+90314491 | MS.gene054644:CDS |
| GGAATTGGGTTACTGGCGGC+CGG | 0.520408 | 3.4:+90315071 | MS.gene054644:CDS |
| TTGTGCGTCACCAAACATCC+AGG | 0.529288 | 3.4:-90314573 | None:intergenic |
| CAATCGCTATCGGCGAGGGT+TGG | 0.530036 | 3.4:+90313103 | MS.gene054644:CDS |
| AGTCTCCAAAGAGCGTATCA+TGG | 0.536848 | 3.4:+90315331 | MS.gene054644:CDS |
| AAGATTGATCCCCATAAGAA+AGG | 0.541186 | 3.4:+90314843 | MS.gene054644:CDS |
| GCTATGCTCATCAAGAATCC+TGG | 0.545092 | 3.4:-90312974 | None:intergenic |
| TTTGGAGACTAATGTGAGAA+GGG | 0.548712 | 3.4:-90315318 | None:intergenic |
| ATTGCTATGGTTGTTGATGT+GGG | 0.550034 | 3.4:+90313057 | MS.gene054644:CDS |
| CTATCACTGGCACATATGCT+GGG | 0.551285 | 3.4:+90315105 | MS.gene054644:CDS |
| TGCACCCGACCTTTCTTATG+GGG | 0.552786 | 3.4:-90314852 | None:intergenic |
| GGACAAAGTAGCACTATCAC+TGG | 0.553077 | 3.4:+90315092 | MS.gene054644:CDS |
| TTGGATCCAGGGAATTTGGA+AGG | 0.555045 | 3.4:+90313001 | MS.gene054644:CDS |
| GGTTGAGAGCATTGATCACT+CGG | 0.555347 | 3.4:+90315171 | MS.gene054644:CDS |
| TGCAGTTCTCATAGCTACCA+TGG | 0.557769 | 3.4:+90314538 | MS.gene054644:CDS |
| TGATCCCCATAAGAAAGGTC+GGG | 0.557824 | 3.4:+90314848 | MS.gene054644:CDS |
| CTTTGGAGACTAATGTGAGA+AGG | 0.557837 | 3.4:-90315319 | None:intergenic |
| CTAGTGGAAAAGAGCTTGTG+AGG | 0.558976 | 3.4:+90314597 | MS.gene054644:CDS |
| ATTCTGCTTTAGTGCAGTCA+AGG | 0.564583 | 3.4:+90314820 | MS.gene054644:CDS |
| ATTGTTGATTCAATCGCTAT+CGG | 0.570420 | 3.4:+90313093 | MS.gene054644:CDS |
| TGCTGGGCAATTCATAATGG+GGG | 0.575837 | 3.4:+90315121 | MS.gene054644:CDS |
| GCTATTCAGATTCTTAGTCG+TGG | 0.577498 | 3.4:+90313259 | MS.gene054644:CDS |
| TTCTTGAGAACTACGGAGTG+AGG | 0.578599 | 3.4:+90314498 | MS.gene054644:CDS |
| TTGGAAGGTGATCTACAAGC+AGG | 0.580203 | 3.4:+90313016 | MS.gene054644:CDS |
| AAAACGATTCATCAGGCTGT+GGG | 0.580396 | 3.4:+90314756 | MS.gene054644:CDS |
| TTGATCCCCATAAGAAAGGT+CGG | 0.580995 | 3.4:+90314847 | MS.gene054644:CDS |
| TAAGAAAGGTCGGGTGCAAG+AGG | 0.581004 | 3.4:+90314857 | MS.gene054644:CDS |
| TTCATTCAAAACATCCAATG+AGG | 0.587564 | 3.4:-90315249 | None:intergenic |
| AGAAGGGGAATCAATGCAAA+GGG | 0.592510 | 3.4:-90315302 | None:intergenic |
| TACAAGCAGGAGCGATTGCA+GGG | 0.597482 | 3.4:+90313029 | MS.gene054644:CDS |
| CTTGAGGAGAAATATGGAGG+AGG | 0.604007 | 3.4:+90315023 | MS.gene054644:CDS |
| GATTGGTGCTGATATTCAAG+AGG | 0.605308 | 3.4:+90313219 | MS.gene054644:CDS |
| ACAAAGCAGGCAAATAGCAT+AGG | 0.606707 | 3.4:+90314978 | MS.gene054644:CDS |
| AAGAAGCTATGGATGTTCAC+AGG | 0.609441 | 3.4:+90312950 | None:intergenic |
| ATGCTGGGCAATTCATAATG+GGG | 0.617730 | 3.4:+90315120 | MS.gene054644:CDS |
| GGTGACTGAAAGTGCAACTG+TGG | 0.617894 | 3.4:-90314904 | None:intergenic |
| TGATTCAATCGCTATCGGCG+AGG | 0.618223 | 3.4:+90313098 | MS.gene054644:CDS |
| GCATAGGATTAGTAAATGCA+GGG | 0.621645 | 3.4:+90314994 | MS.gene054644:CDS |
| GAATGTAGAAATACATTGTG+AGG | 0.622728 | 3.4:-90314801 | None:intergenic |
| TATCTTGAGGAGAAATATGG+AGG | 0.622837 | 3.4:+90315020 | MS.gene054644:CDS |
| GAGAAGGGGAATCAATGCAA+AGG | 0.624992 | 3.4:-90315303 | None:intergenic |
| TAGTGGAAAAGAGCTTGTGA+GGG | 0.626339 | 3.4:+90314598 | MS.gene054644:CDS |
| AAATGCAGGGCAGTATCTTG+AGG | 0.627069 | 3.4:+90315007 | MS.gene054644:CDS |
| TTTGGTGACGCACAACCTAG+TGG | 0.643117 | 3.4:+90314581 | MS.gene054644:CDS |
| CCAGGCAAACGAAAGAGCCA+TGG | 0.651558 | 3.4:-90314555 | None:intergenic |
| ATAAGAACACCAGCCCAAAG+AGG | 0.653164 | 3.4:-90313289 | None:intergenic |
| TTGGAGACTAATGTGAGAAG+GGG | 0.655246 | 3.4:-90315317 | None:intergenic |
| GCTGGGCAATTCATAATGGG+GGG | 0.671671 | 3.4:+90315122 | MS.gene054644:CDS |
| AGTGGAAAAGAGCTTGTGAG+GGG | 0.691219 | 3.4:+90314599 | MS.gene054644:CDS |
| GACAAACAGATTGATCATGA+AGG | 0.711925 | 3.4:-90314925 | None:intergenic |
| ATGGGGAATTGGGTTACTGG+CGG | 0.718976 | 3.4:+90315067 | MS.gene054644:CDS |
| TCTCCAAAGAGCGTATCATG+GGG | 0.719042 | 3.4:+90315333 | MS.gene054644:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAGATAAAAAAATATTTG+AGG | - | chr3.4:90314043-90314062 | None:intergenic | 15.0% |
| !!! | ACTATAAAAAAAGTTTTACA+CGG | + | chr3.4:90313994-90314013 | MS.gene054644:intron | 15.0% |
| !!! | AGTGAAATTAAGTTTTTTTT+GGG | + | chr3.4:90313436-90313455 | MS.gene054644:intron | 15.0% |
| !!! | TAATTGTTTTACTCAATTAT+GGG | + | chr3.4:90313396-90313415 | MS.gene054644:intron | 15.0% |
| !!! | TAGTGAAATTAAGTTTTTTT+TGG | + | chr3.4:90313435-90313454 | MS.gene054644:intron | 15.0% |
| !!! | TGTATAAGTTATTTTTATCA+CGG | + | chr3.4:90313485-90313504 | MS.gene054644:intron | 15.0% |
| !!! | TTAATTGTTTTACTCAATTA+TGG | + | chr3.4:90313395-90313414 | MS.gene054644:intron | 15.0% |
| !! | CCAAAAAAAAAAAAAAAACG+TGG | - | chr3.4:90314653-90314672 | None:intergenic | 20.0% |
| !! | GTTTGGATTAAATTTATGTA+TGG | + | chr3.4:90314289-90314308 | MS.gene054644:intron | 20.0% |
| !! | TTCAAAAATATAGTAAGCTA+AGG | - | chr3.4:90314220-90314239 | None:intergenic | 20.0% |
| !!! | CCACGTTTTTTTTTTTTTTT+TGG | + | chr3.4:90314650-90314669 | MS.gene054644:intron | 20.0% |
| !!! | TAGACCATTTTTTTTCATTT+TGG | + | chr3.4:90313637-90313656 | MS.gene054644:intron | 20.0% |
| !!! | TTTTGTTGTTGATATCATAA+AGG | - | chr3.4:90314253-90314272 | None:intergenic | 20.0% |
| ! | ACAATAGCTACAATTATAGT+TGG | - | chr3.4:90315212-90315231 | None:intergenic | 25.0% |
| ! | AGAACTGAAATTGAATTTGT+CGG | + | chr3.4:90313915-90313934 | MS.gene054644:intron | 25.0% |
| ! | ATTCAAAACTCAAACTTGTA+TGG | + | chr3.4:90314144-90314163 | MS.gene054644:intron | 25.0% |
| ! | ATTCCCCATATATAAAGAAT+AGG | - | chr3.4:90315056-90315075 | None:intergenic | 25.0% |
| ! | ATTCTTTATATATGGGGAAT+TGG | + | chr3.4:90315056-90315075 | MS.gene054644:CDS | 25.0% |
| ! | ATTTCTTTAATCGAAGGTTT+AGG | - | chr3.4:90315151-90315170 | None:intergenic | 25.0% |
| ! | CACTCCAAAATGAAAAAAAA+TGG | - | chr3.4:90313644-90313663 | None:intergenic | 25.0% |
| ! | CTTCCCTATTCTTTATATAT+GGG | + | chr3.4:90315049-90315068 | MS.gene054644:CDS | 25.0% |
| ! | GTTCATAATTAGAACTCATA+GGG | + | chr3.4:90313687-90313706 | MS.gene054644:intron | 25.0% |
| ! | TAAACCTTCGATTAAAGAAA+TGG | + | chr3.4:90315150-90315169 | MS.gene054644:CDS | 25.0% |
| ! | TCATGCAAAGCAAAATATAA+CGG | - | chr3.4:90314184-90314203 | None:intergenic | 25.0% |
| ! | TCTTCCCTATTCTTTATATA+TGG | + | chr3.4:90315048-90315067 | MS.gene054644:CDS | 25.0% |
| ! | TGTTCATAATTAGAACTCAT+AGG | + | chr3.4:90313686-90313705 | MS.gene054644:intron | 25.0% |
| ! | TTCCCCATATATAAAGAATA+GGG | - | chr3.4:90315055-90315074 | None:intergenic | 25.0% |
| ! | TTCCCTATTCTTTATATATG+GGG | + | chr3.4:90315050-90315069 | MS.gene054644:CDS | 25.0% |
| ! | TTCTTTATATATGGGGAATT+GGG | + | chr3.4:90315057-90315076 | MS.gene054644:CDS | 25.0% |
| ! | TTGTAGCTATTGTTTATAAC+AGG | + | chr3.4:90315219-90315238 | MS.gene054644:CDS | 25.0% |
| ! | TTTGAATATAGTCAAGAGTA+AGG | - | chr3.4:90314131-90314150 | None:intergenic | 25.0% |
| !! | AAAAAAAGTTTTACACGGAT+GGG | + | chr3.4:90313999-90314018 | MS.gene054644:intron | 25.0% |
| !! | ACTTTATTGTTATTGTCTTC+AGG | + | chr3.4:90314388-90314407 | MS.gene054644:intron | 25.0% |
| !! | ATGAGTTCTAATTATGAACA+AGG | - | chr3.4:90313686-90313705 | None:intergenic | 25.0% |
| !! | ATTCAATTATGCATGTTTTG+AGG | + | chr3.4:90313356-90313375 | MS.gene054644:intron | 25.0% |
| !! | TAAAAAAAGTTTTACACGGA+TGG | + | chr3.4:90313998-90314017 | MS.gene054644:intron | 25.0% |
| !! | TTTCTATTTCTTGAGAACTA+CGG | + | chr3.4:90314491-90314510 | MS.gene054644:CDS | 25.0% |
| !!! | AACTTTTTCATAAGCTATCA+TGG | + | chr3.4:90313525-90313544 | MS.gene054644:intron | 25.0% |
| !!! | ACAAAAGTTCTGAAATTGAA+TGG | + | chr3.4:90314267-90314286 | MS.gene054644:intron | 25.0% |
| !!! | CAATATTTTTGAACATTTCC+TGG | + | chr3.4:90314339-90314358 | MS.gene054644:intron | 25.0% |
| !!! | CATTTTTTTTCATTTTGGAG+TGG | + | chr3.4:90313642-90313661 | MS.gene054644:intron | 25.0% |
| AATTAGAACTCATAGGGATT+CGG | + | chr3.4:90313693-90313712 | MS.gene054644:intron | 30.0% | |
| ACCAAAATACACTAAAGTCA+CGG | - | chr3.4:90313742-90313761 | None:intergenic | 30.0% | |
| CAGTTCTGTGATATAATTAC+TGG | - | chr3.4:90314107-90314126 | None:intergenic | 30.0% | |
| GAATGTAGAAATACATTGTG+AGG | - | chr3.4:90314804-90314823 | None:intergenic | 30.0% | |
| TCAACCATTTCTTTAATCGA+AGG | - | chr3.4:90315157-90315176 | None:intergenic | 30.0% | |
| TGAATGAAAAGAGTGATGAT+AGG | - | chr3.4:90313341-90313360 | None:intergenic | 30.0% | |
| TTCATTCAAAACATCCAATG+AGG | - | chr3.4:90315252-90315271 | None:intergenic | 30.0% | |
| TTCTTATTACTGCTTCTGAT+TGG | + | chr3.4:90313305-90313324 | MS.gene054644:CDS | 30.0% | |
| TTTACTCAATTATGGGATTG+AGG | + | chr3.4:90313403-90313422 | MS.gene054644:intron | 30.0% | |
| ! | AAAAAAGTTTTACACGGATG+GGG | + | chr3.4:90314000-90314019 | MS.gene054644:intron | 30.0% |
| ! | GTTTTTGCTAAGGGTTTTTA+TGG | + | chr3.4:90314954-90314973 | MS.gene054644:CDS | 30.0% |
| ! | TGTTATTGTCTTCAGGTTAT+TGG | + | chr3.4:90314395-90314414 | MS.gene054644:intron | 30.0% |
| !! | AGTTCTGAAATTGAATGGTT+TGG | + | chr3.4:90314272-90314291 | MS.gene054644:intron | 30.0% |
| !! | ATTGTTGATTCAATCGCTAT+CGG | + | chr3.4:90313093-90313112 | MS.gene054644:CDS | 30.0% |
| !! | CATTGGATGTTTTGAATGAA+TGG | + | chr3.4:90315252-90315271 | MS.gene054644:CDS | 30.0% |
| !! | CTATCTTGATTCTAGTTTCT+AGG | + | chr3.4:90314058-90314077 | MS.gene054644:intron | 30.0% |
| AAAAGAGTGATGATAGGCAT+AGG | - | chr3.4:90313335-90313354 | None:intergenic | 35.0% | |
| AAGATTGATCCCCATAAGAA+AGG | + | chr3.4:90314843-90314862 | MS.gene054644:CDS | 35.0% | |
| AATCTAAACATGCGATCTAG+TGG | + | chr3.4:90313607-90313626 | MS.gene054644:intron | 35.0% | |
| ACTAAAATCAGTTAACAGCC+AGG | - | chr3.4:90313960-90313979 | None:intergenic | 35.0% | |
| AGAGAGAATAAAGCACAGTT+AGG | - | chr3.4:90314452-90314471 | None:intergenic | 35.0% | |
| AGGTGGTTAAACATGAAAGT+GGG | - | chr3.4:90314432-90314451 | None:intergenic | 35.0% | |
| ATATGCTGGGCAATTCATAA+TGG | + | chr3.4:90315118-90315137 | MS.gene054644:CDS | 35.0% | |
| ATTGCTATGGTTGTTGATGT+GGG | + | chr3.4:90313057-90313076 | MS.gene054644:CDS | 35.0% | |
| CAATGCAAAGGGAATTTGTA+TGG | - | chr3.4:90315294-90315313 | None:intergenic | 35.0% | |
| CAGTATCTTGAGGAGAAATA+TGG | + | chr3.4:90315017-90315036 | MS.gene054644:CDS | 35.0% | |
| GAATCAAAATACCTACCAGA+AGG | - | chr3.4:90314722-90314741 | None:intergenic | 35.0% | |
| GACAAACAGATTGATCATGA+AGG | - | chr3.4:90314928-90314947 | None:intergenic | 35.0% | |
| GCTGATATTCAAGAGGTTAT+TGG | + | chr3.4:90313226-90313245 | MS.gene054644:CDS | 35.0% | |
| TAGAGATGAGTATCCGAATT+GGG | + | chr3.4:90313159-90313178 | MS.gene054644:CDS | 35.0% | |
| TAGCTCAAAAACGATTCATC+AGG | + | chr3.4:90314749-90314768 | MS.gene054644:CDS | 35.0% | |
| TAGGTGGTTAAACATGAAAG+TGG | - | chr3.4:90314433-90314452 | None:intergenic | 35.0% | |
| TATCTTGAGGAGAAATATGG+AGG | + | chr3.4:90315020-90315039 | MS.gene054644:CDS | 35.0% | |
| TATGCTGGGCAATTCATAAT+GGG | + | chr3.4:90315119-90315138 | MS.gene054644:CDS | 35.0% | |
| TGAAATCAAGAAATGAAGCC+AGG | - | chr3.4:90314360-90314379 | None:intergenic | 35.0% | |
| TTTGGAGACTAATGTGAGAA+GGG | - | chr3.4:90315321-90315340 | None:intergenic | 35.0% | |
| ! | ACCGTGACTTTAGTGTATTT+TGG | + | chr3.4:90313738-90313757 | MS.gene054644:intron | 35.0% |
| ! | AGCATAGGATTAGTAAATGC+AGG | + | chr3.4:90314993-90315012 | MS.gene054644:CDS | 35.0% |
| ! | CTTGATGAGCATAGCATTTT+TGG | + | chr3.4:90312982-90313001 | MS.gene054644:CDS | 35.0% |
| ! | GAGATATGTGCTTTGGTTTA+TGG | + | chr3.4:90313183-90313202 | MS.gene054644:CDS | 35.0% |
| ! | GCATAGGATTAGTAAATGCA+GGG | + | chr3.4:90314994-90315013 | MS.gene054644:CDS | 35.0% |
| ! | GTCACAACAGTTTTTGCTAA+GGG | + | chr3.4:90314945-90314964 | MS.gene054644:CDS | 35.0% |
| ! | TGTCACAACAGTTTTTGCTA+AGG | + | chr3.4:90314944-90314963 | MS.gene054644:CDS | 35.0% |
| !! | ATCGTTTTTGAGCTAAGTCT+TGG | - | chr3.4:90314744-90314763 | None:intergenic | 35.0% |
| !! | ATTTTTGGATCCAGGGAATT+TGG | + | chr3.4:90312997-90313016 | MS.gene054644:CDS | 35.0% |
| AAAAACGATTCATCAGGCTG+TGG | + | chr3.4:90314755-90314774 | MS.gene054644:CDS | 40.0% | |
| AAAACGATTCATCAGGCTGT+GGG | + | chr3.4:90314756-90314775 | MS.gene054644:CDS | 40.0% | |
| AAGCTATCATGGAGAGCTTA+TGG | + | chr3.4:90313536-90313555 | MS.gene054644:intron | 40.0% | |
| ACAAAGCAGGCAAATAGCAT+AGG | + | chr3.4:90314978-90314997 | MS.gene054644:CDS | 40.0% | |
| AGAAGGGGAATCAATGCAAA+GGG | - | chr3.4:90315305-90315324 | None:intergenic | 40.0% | |
| AGTTGCAGCTCATGAAAATC+CGG | - | chr3.4:90313856-90313875 | None:intergenic | 40.0% | |
| ATGCTGGGCAATTCATAATG+GGG | + | chr3.4:90315120-90315139 | MS.gene054644:CDS | 40.0% | |
| ATTCTGCTTTAGTGCAGTCA+AGG | + | chr3.4:90314820-90314839 | MS.gene054644:CDS | 40.0% | |
| CATTGCTATGGTTGTTGATG+TGG | + | chr3.4:90313056-90313075 | MS.gene054644:CDS | 40.0% | |
| CTAAGTTTCCTGTTAGTACC+TGG | + | chr3.4:90313939-90313958 | MS.gene054644:intron | 40.0% | |
| GAGAATAAAGCACAGTTAGG+TGG | - | chr3.4:90314449-90314468 | None:intergenic | 40.0% | |
| GCTATTCAGATTCTTAGTCG+TGG | + | chr3.4:90313259-90313278 | MS.gene054644:CDS | 40.0% | |
| GGTTAAACATGAAAGTGGGA+TGG | - | chr3.4:90314428-90314447 | None:intergenic | 40.0% | |
| GTAGAGATGAGTATCCGAAT+TGG | + | chr3.4:90313158-90313177 | MS.gene054644:CDS | 40.0% | |
| GTTATGCCAGTGGGATTATA+GGG | - | chr3.4:90314688-90314707 | None:intergenic | 40.0% | |
| TAACCTGTGTTTGTTCCTTC+TGG | + | chr3.4:90314704-90314723 | MS.gene054644:intron | 40.0% | |
| TAGTGGAAAAGAGCTTGTGA+GGG | + | chr3.4:90314598-90314617 | MS.gene054644:CDS | 40.0% | |
| TATATGGGGAATTGGGTTAC+TGG | + | chr3.4:90315064-90315083 | MS.gene054644:CDS | 40.0% | |
| TGCAACTTGCAAGGAAAGTT+TGG | + | chr3.4:90313869-90313888 | MS.gene054644:intron | 40.0% | |
| TTGATCCCCATAAGAAAGGT+CGG | + | chr3.4:90314847-90314866 | MS.gene054644:CDS | 40.0% | |
| TTGGAGACTAATGTGAGAAG+GGG | - | chr3.4:90315320-90315339 | None:intergenic | 40.0% | |
| ! | ATGGCTGAACTTGCTTTGAT+TGG | + | chr3.4:90313202-90313221 | MS.gene054644:CDS | 40.0% |
| ! | CTTTGGAGACTAATGTGAGA+AGG | - | chr3.4:90315322-90315341 | None:intergenic | 40.0% |
| ! | GGGTTTTTATGGTACAAAGC+AGG | + | chr3.4:90314965-90314984 | MS.gene054644:CDS | 40.0% |
| ! | TTGATGTGGGCTACTTTGAT+GGG | + | chr3.4:90313070-90313089 | MS.gene054644:CDS | 40.0% |
| ! | TTGCAGGGTATTCATTGCTA+TGG | + | chr3.4:90313044-90313063 | MS.gene054644:CDS | 40.0% |
| ! | TTGTCTTCAGGTTATTGGCT+TGG | + | chr3.4:90314400-90314419 | MS.gene054644:intron | 40.0% |
| !! | AGCATAGCATTTTTGGATCC+AGG | + | chr3.4:90312989-90313008 | MS.gene054644:CDS | 40.0% |
| !! | AGTGATAGTGCTACTTTGTC+CGG | - | chr3.4:90315093-90315112 | None:intergenic | 40.0% |
| !! | GATTGGTGCTGATATTCAAG+AGG | + | chr3.4:90313219-90313238 | MS.gene054644:CDS | 40.0% |
| !! | GCATAGCATTTTTGGATCCA+GGG | + | chr3.4:90312990-90313009 | MS.gene054644:CDS | 40.0% |
| !! | GTCAGGATTTGCTACCTTTA+AGG | - | chr3.4:90313833-90313852 | None:intergenic | 40.0% |
| AAAGGTAGCAAATCCTGACC+CGG | + | chr3.4:90313834-90313853 | MS.gene054644:intron | 45.0% | |
| AAATGCAGGGCAGTATCTTG+AGG | + | chr3.4:90315007-90315026 | MS.gene054644:CDS | 45.0% | |
| AAGAACAGGCCCAACCTTAA+AGG | - | chr3.4:90315360-90315379 | None:intergenic | 45.0% | |
| ACAAACACAGGTTATGCCAG+TGG | - | chr3.4:90314698-90314717 | None:intergenic | 45.0% | |
| ACTATCACTGGCACATATGC+TGG | + | chr3.4:90315104-90315123 | MS.gene054644:CDS | 45.0% | |
| AGATCACCTTCCAAATTCCC+TGG | - | chr3.4:90313010-90313029 | None:intergenic | 45.0% | |
| AGCACATATCTCGCCCAATT+CGG | - | chr3.4:90313175-90313194 | None:intergenic | 45.0% | |
| AGTGGAAAAGAGCTTGTGAG+GGG | + | chr3.4:90314599-90314618 | MS.gene054644:CDS | 45.0% | |
| ATAAGAACACCAGCCCAAAG+AGG | - | chr3.4:90313292-90313311 | None:intergenic | 45.0% | |
| ATCTCTCCCTATAATCCCAC+TGG | + | chr3.4:90314679-90314698 | MS.gene054644:intron | 45.0% | |
| ATTGGGCGAGATATGTGCTT+TGG | + | chr3.4:90313176-90313195 | MS.gene054644:CDS | 45.0% | |
| CAAACACAGGTTATGCCAGT+GGG | - | chr3.4:90314697-90314716 | None:intergenic | 45.0% | |
| CAACGACTTTCCTGCCTTAA+AGG | + | chr3.4:90313816-90313835 | MS.gene054644:intron | 45.0% | |
| CTAAACATGCGATCTAGTGG+AGG | + | chr3.4:90313610-90313629 | MS.gene054644:intron | 45.0% | |
| CTACCAGAAGGAACAAACAC+AGG | - | chr3.4:90314710-90314729 | None:intergenic | 45.0% | |
| CTAGTGGAAAAGAGCTTGTG+AGG | + | chr3.4:90314597-90314616 | MS.gene054644:CDS | 45.0% | |
| CTATCACTGGCACATATGCT+GGG | + | chr3.4:90315105-90315124 | MS.gene054644:CDS | 45.0% | |
| CTGTGTTTGTTCCTTCTGGT+AGG | + | chr3.4:90314708-90314727 | MS.gene054644:intron | 45.0% | |
| CTTGAGGAGAAATATGGAGG+AGG | + | chr3.4:90315023-90315042 | MS.gene054644:CDS | 45.0% | |
| CTTTCGTTTGCCTGGATGTT+TGG | + | chr3.4:90314563-90314582 | MS.gene054644:CDS | 45.0% | |
| GAGAAGGGGAATCAATGCAA+AGG | - | chr3.4:90315306-90315325 | None:intergenic | 45.0% | |
| GCTATGCTCATCAAGAATCC+TGG | - | chr3.4:90312977-90312996 | None:intergenic | 45.0% | |
| GGACAAAGTAGCACTATCAC+TGG | + | chr3.4:90315092-90315111 | MS.gene054644:CDS | 45.0% | |
| GGTTATGCCAGTGGGATTAT+AGG | - | chr3.4:90314689-90314708 | None:intergenic | 45.0% | |
| GTTAACAGCCAGGTACTAAC+AGG | - | chr3.4:90313950-90313969 | None:intergenic | 45.0% | |
| GTTGCAGCTCATGAAAATCC+GGG | - | chr3.4:90313855-90313874 | None:intergenic | 45.0% | |
| TAACAGGTCAGAAGCCTCAT+TGG | + | chr3.4:90315235-90315254 | MS.gene054644:CDS | 45.0% | |
| TGATCCCCATAAGAAAGGTC+GGG | + | chr3.4:90314848-90314867 | MS.gene054644:CDS | 45.0% | |
| TGCAGTTCTCATAGCTACCA+TGG | + | chr3.4:90314538-90314557 | MS.gene054644:CDS | 45.0% | |
| TGCTGGGCAATTCATAATGG+GGG | + | chr3.4:90315121-90315140 | MS.gene054644:CDS | 45.0% | |
| TTCATGAGCTGCAACTTGCA+AGG | + | chr3.4:90313860-90313879 | MS.gene054644:intron | 45.0% | |
| TTCTTGAGAACTACGGAGTG+AGG | + | chr3.4:90314498-90314517 | MS.gene054644:CDS | 45.0% | |
| TTGCACCCGACCTTTCTTAT+GGG | - | chr3.4:90314856-90314875 | None:intergenic | 45.0% | |
| TTGGAAGGTGATCTACAAGC+AGG | + | chr3.4:90313016-90313035 | MS.gene054644:CDS | 45.0% | |
| TTGGATCCAGGGAATTTGGA+AGG | + | chr3.4:90313001-90313020 | MS.gene054644:CDS | 45.0% | |
| ! | AGTCTCCAAAGAGCGTATCA+TGG | + | chr3.4:90315331-90315350 | MS.gene054644:CDS | 45.0% |
| ! | CTCACAAGCTCTTTTCCACT+AGG | - | chr3.4:90314599-90314618 | None:intergenic | 45.0% |
| ! | GTCTCCAAAGAGCGTATCAT+GGG | + | chr3.4:90315332-90315351 | MS.gene054644:CDS | 45.0% |
| ! | GTTGATGTGGGCTACTTTGA+TGG | + | chr3.4:90313069-90313088 | MS.gene054644:CDS | 45.0% |
| ! | TCGTGGTGTTTTGCCTCTTT+GGG | + | chr3.4:90313276-90313295 | MS.gene054644:CDS | 45.0% |
| ! | TCTCCAAAGAGCGTATCATG+GGG | + | chr3.4:90315333-90315352 | MS.gene054644:CDS | 45.0% |
| !! | ATCATGGGGTCCTTTAAGGT+TGG | + | chr3.4:90315347-90315366 | MS.gene054644:CDS | 45.0% |
| !! | GGATTTGCTACCTTTAAGGC+AGG | - | chr3.4:90313829-90313848 | None:intergenic | 45.0% |
| !! | GGTTGAGAGCATTGATCACT+CGG | + | chr3.4:90315171-90315190 | MS.gene054644:CDS | 45.0% |
| !! | TCATAGGGATTCGGTGACTT+TGG | + | chr3.4:90313702-90313721 | MS.gene054644:intron | 45.0% |
| !! | TCATGGGGTCCTTTAAGGTT+GGG | + | chr3.4:90315348-90315367 | MS.gene054644:CDS | 45.0% |
| AGCTCATGAAAATCCGGGTC+AGG | - | chr3.4:90313850-90313869 | None:intergenic | 50.0% | |
| ATGGGGAATTGGGTTACTGG+CGG | + | chr3.4:90315067-90315086 | MS.gene054644:CDS | 50.0% | |
| CTTGCACCCGACCTTTCTTA+TGG | - | chr3.4:90314857-90314876 | None:intergenic | 50.0% | |
| GAACTACGGAGTGAGGAAGT+TGG | + | chr3.4:90314505-90314524 | MS.gene054644:CDS | 50.0% | |
| GATTCAATCGCTATCGGCGA+GGG | + | chr3.4:90313099-90313118 | MS.gene054644:CDS | 50.0% | |
| GCGTATCATGGGGTCCTTTA+AGG | + | chr3.4:90315343-90315362 | MS.gene054644:CDS | 50.0% | |
| TAAGAAAGGTCGGGTGCAAG+AGG | + | chr3.4:90314857-90314876 | MS.gene054644:CDS | 50.0% | |
| TACAAGCAGGAGCGATTGCA+GGG | + | chr3.4:90313029-90313048 | MS.gene054644:CDS | 50.0% | |
| TGATTCAATCGCTATCGGCG+AGG | + | chr3.4:90313098-90313117 | MS.gene054644:CDS | 50.0% | |
| TGCACCCGACCTTTCTTATG+GGG | - | chr3.4:90314855-90314874 | None:intergenic | 50.0% | |
| TTGTGCGTCACCAAACATCC+AGG | - | chr3.4:90314576-90314595 | None:intergenic | 50.0% | |
| ! | GCTGGGCAATTCATAATGGG+GGG | + | chr3.4:90315122-90315141 | MS.gene054644:CDS | 50.0% |
| ! | GGTGACTGAAAGTGCAACTG+TGG | - | chr3.4:90314907-90314926 | None:intergenic | 50.0% |
| ! | GTCGTGGTGTTTTGCCTCTT+TGG | + | chr3.4:90313275-90313294 | MS.gene054644:CDS | 50.0% |
| !! | TAGGGATTCGGTGACTTTGG+TGG | + | chr3.4:90313705-90313724 | MS.gene054644:intron | 50.0% |
| !! | TTTGGTGACGCACAACCTAG+TGG | + | chr3.4:90314581-90314600 | MS.gene054644:CDS | 50.0% |
| CCAGGCAAACGAAAGAGCCA+TGG | - | chr3.4:90314558-90314577 | None:intergenic | 55.0% | |
| CCATGGCTCTTTCGTTTGCC+TGG | + | chr3.4:90314555-90314574 | MS.gene054644:CDS | 55.0% | |
| CTACAAGCAGGAGCGATTGC+AGG | + | chr3.4:90313028-90313047 | MS.gene054644:CDS | 55.0% | |
| GGACCCCATGATACGCTCTT+TGG | - | chr3.4:90315339-90315358 | None:intergenic | 55.0% | |
| ! | GGTGTTTTGCCTCTTTGGGC+TGG | + | chr3.4:90313280-90313299 | MS.gene054644:CDS | 55.0% |
| !! | GATTCGGTGACTTTGGTGGC+GGG | + | chr3.4:90313709-90313728 | MS.gene054644:intron | 55.0% |
| !! | GGATTCGGTGACTTTGGTGG+CGG | + | chr3.4:90313708-90313727 | MS.gene054644:intron | 55.0% |
| CAATCGCTATCGGCGAGGGT+TGG | + | chr3.4:90313103-90313122 | MS.gene054644:CDS | 60.0% | |
| GGAATTGGGTTACTGGCGGC+CGG | + | chr3.4:90315071-90315090 | MS.gene054644:CDS | 60.0% | |
| ! | CATCAGGCTGTGGGCGTTGT+GGG | + | chr3.4:90314765-90314784 | MS.gene054644:CDS | 60.0% |
| ! | TCATCAGGCTGTGGGCGTTG+TGG | + | chr3.4:90314764-90314783 | MS.gene054644:CDS | 60.0% |
| !! | GCGAGGGTTGGTGTTGCTAC+TGG | + | chr3.4:90313115-90313134 | MS.gene054644:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90312962 | 90315382 | 90312962 | ID=MS.gene054644 |
| chr3.4 | mRNA | 90312962 | 90315382 | 90312962 | ID=MS.gene054644.t1;Parent=MS.gene054644 |
| chr3.4 | exon | 90312962 | 90313326 | 90312962 | ID=MS.gene054644.t1.exon1;Parent=MS.gene054644.t1 |
| chr3.4 | CDS | 90312962 | 90313326 | 90312962 | ID=cds.MS.gene054644.t1;Parent=MS.gene054644.t1 |
| chr3.4 | exon | 90314484 | 90314620 | 90314484 | ID=MS.gene054644.t1.exon2;Parent=MS.gene054644.t1 |
| chr3.4 | CDS | 90314484 | 90314620 | 90314484 | ID=cds.MS.gene054644.t1;Parent=MS.gene054644.t1 |
| chr3.4 | exon | 90314730 | 90315382 | 90314730 | ID=MS.gene054644.t1.exon3;Parent=MS.gene054644.t1 |
| chr3.4 | CDS | 90314730 | 90315382 | 90314730 | ID=cds.MS.gene054644.t1;Parent=MS.gene054644.t1 |
| Gene Sequence |
| Protein sequence |
