AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054696

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054696.t1 MTR_3g082650 72.368 76 17 2 2 77 78 149 1.13e-26 100
MS.gene054696.t1 MTR_6g004810 50.633 79 33 3 2 78 105 179 9.67e-19 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054696.t1 AT3G13224 59.259 81 25 4 2 78 79 155 3.18e-21 83.6
MS.gene054696.t1 AT3G13224 59.259 81 25 4 2 78 79 155 8.09e-21 84.3
MS.gene054696.t1 AT3G13224 59.259 81 25 4 2 78 70 146 9.22e-21 84.3
MS.gene054696.t1 AT5G40490 48.315 89 39 4 2 88 85 168 1.04e-17 76.3
MS.gene054696.t1 AT5G40490 48.315 89 39 4 2 88 102 185 1.48e-17 75.9
MS.gene054696.t1 AT1G17640 52.632 57 24 1 2 55 126 182 1.58e-13 64.3
MS.gene054696.t1 AT1G17640 52.632 57 24 1 2 55 126 182 1.58e-13 64.3
MS.gene054696.t1 AT1G17640 52.632 57 24 1 2 55 126 182 1.58e-13 64.3

Find 17 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTGTTCGGCAGCTTGTTC+TGG 0.174611 5.3:-32589581 None:intergenic
AAGAACTTCTTCTCAAAGTA+TGG 0.233679 5.3:+32589554 MS.gene054696:CDS
CTGTTCTCATTTCTAATTAC+AGG 0.281211 5.3:-32589605 None:intergenic
GGTGTTCGGCAGCTTGTTCT+GGG 0.389840 5.3:-32589580 None:intergenic
TCGATTTCAATTTCAATCGA+TGG 0.455907 5.3:-32592356 None:intergenic
AAACCTTCAGATACAGTTGC+TGG 0.469643 5.3:-32589350 None:intergenic
AATCAAGAGGACTATTACAA+AGG 0.470650 5.3:+32589274 MS.gene054696:CDS
CAATTTCAATCGATGGAATG+AGG 0.472213 5.3:-32592349 None:intergenic
TCTAATTACAGGAAGGTGTT+CGG 0.480701 5.3:-32589594 None:intergenic
ATCAAGAGGACTATTACAAA+GGG 0.492623 5.3:+32589275 MS.gene054696:CDS
CTGTAATTAGAAATGAGAAC+AGG 0.521543 5.3:+32589606 MS.gene054696:CDS
AGAACTTCTTCTCAAAGTAT+GGG 0.527076 5.3:+32589555 MS.gene054696:CDS
TCACATCATCAATGACAAGA+AGG 0.569815 5.3:+32589133 MS.gene054696:CDS
ATTCCAGCAACTGTATCTGA+AGG 0.581606 5.3:+32589347 MS.gene054696:CDS
TCTCATTTCTAATTACAGGA+AGG 0.582084 5.3:-32589601 None:intergenic
CATATCAGGTTGAAATCAAG+AGG 0.589740 5.3:+32589261 MS.gene054696:intron
GAACTTCTTCTCAAAGTATG+GGG 0.639196 5.3:+32589556 MS.gene054696:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAGATAC+CGG + chr5.3:32590942-32590961 MS.gene054696:intron 10.0%
!! AAATCATAATAACATAAAAA+GGG - chr5.3:32590621-32590640 None:intergenic 10.0%
!!! ATATTTTCCTAAATTATTAT+AGG - chr5.3:32590999-32591018 None:intergenic 10.0%
!! ATGAGAGTAAATAAATATAT+AGG + chr5.3:32589873-32589892 MS.gene054696:intron 15.0%
!! ATTACAAAAAACTAACTAAT+AGG - chr5.3:32589728-32589747 None:intergenic 15.0%
!! CAAATCATAATAACATAAAA+AGG - chr5.3:32590622-32590641 None:intergenic 15.0%
!! TAAAAAATATTCAAAGTGAA+GGG + chr5.3:32589694-32589713 MS.gene054696:intron 15.0%
!! TTAAAAAATATTCAAAGTGA+AGG + chr5.3:32589693-32589712 MS.gene054696:intron 15.0%
!!! AATTTTCTTTTCTAAAAGAA+GGG + chr5.3:32591718-32591737 MS.gene054696:intron 15.0%
!!! ATTCAGTTTAATTTTTGATT+TGG + chr5.3:32589192-32589211 MS.gene054696:intron 15.0%
!!! GGAATAGAATAATTTAATTT+TGG + chr5.3:32591739-32591758 MS.gene054696:intron 15.0%
!!! TATTAGTTAGTTTTTTGTAA+TGG + chr5.3:32589727-32589746 MS.gene054696:intron 15.0%
!!! TTCAGTTTAATTTTTGATTT+GGG + chr5.3:32589193-32589212 MS.gene054696:intron 15.0%
!!! TTTTTTTTTTTTGAAGTATC+CGG - chr5.3:32590931-32590950 None:intergenic 15.0%
!! ACTTCATCTTATGATAATAA+GGG + chr5.3:32592163-32592182 MS.gene054696:intron 20.0%
!! ATAGTTTAATGTGTATTGAA+GGG + chr5.3:32592211-32592230 MS.gene054696:intron 20.0%
!! CAAACATATTTATCCTTTAT+TGG + chr5.3:32590460-32590479 MS.gene054696:intron 20.0%
!! CTCTTTGTTCTTATATATTT+GGG + chr5.3:32590272-32590291 MS.gene054696:intron 20.0%
!! TAATCAATGAAAATTGCATT+AGG + chr5.3:32589954-32589973 MS.gene054696:intron 20.0%
!!! AAAACTAAGAAGATTTTTGT+TGG + chr5.3:32589320-32589339 MS.gene054696:CDS 20.0%
!!! CAATTTTCTTTTCTAAAAGA+AGG + chr5.3:32591717-32591736 MS.gene054696:intron 20.0%
!!! TGTTTTCTTTTGTAGATTAA+TGG + chr5.3:32591139-32591158 MS.gene054696:intron 20.0%
! AAAATCTCATCTTTAGCAAA+TGG - chr5.3:32590685-32590704 None:intergenic 25.0%
! AAAATGTAGTAAGTGTTTGT+TGG + chr5.3:32591548-32591567 MS.gene054696:intron 25.0%
! AAATCTCATCTTTAGCAAAT+GGG - chr5.3:32590684-32590703 None:intergenic 25.0%
! AAGAAGGTAAAACTGTAATT+AGG + chr5.3:32589149-32589168 MS.gene054696:intron 25.0%
! AAGAGAGTTACTAACAAAAA+TGG - chr5.3:32591307-32591326 None:intergenic 25.0%
! AATGAAAACAAATCCAATGA+AGG - chr5.3:32590181-32590200 None:intergenic 25.0%
! AATGCAGTTGTTGAATATTA+GGG + chr5.3:32590022-32590041 MS.gene054696:intron 25.0%
! ACAAAAGAAAACATACACAA+GGG - chr5.3:32591132-32591151 None:intergenic 25.0%
! AGAAAATGCTTATGTAGTTA+TGG + chr5.3:32590414-32590433 MS.gene054696:intron 25.0%
! AGAAGGTAAAACTGTAATTA+GGG + chr5.3:32589150-32589169 MS.gene054696:intron 25.0%
! AGCTATTCTTTCATTGAAAT+CGG - chr5.3:32591447-32591466 None:intergenic 25.0%
! ATAACATAAAAAGGGTAACT+TGG - chr5.3:32590613-32590632 None:intergenic 25.0%
! CACTTCATCTTATGATAATA+AGG + chr5.3:32592162-32592181 MS.gene054696:intron 25.0%
! CATAGTTTAATGTGTATTGA+AGG + chr5.3:32592210-32592229 MS.gene054696:intron 25.0%
! CATATATGTATCCCAAAATT+TGG - chr5.3:32591613-32591632 None:intergenic 25.0%
! GAAAATGCTTATGTAGTTAT+GGG + chr5.3:32590415-32590434 MS.gene054696:intron 25.0%
! GCTCTTTGTTCTTATATATT+TGG + chr5.3:32590271-32590290 MS.gene054696:intron 25.0%
! GTAGACACCTATAATAATTT+AGG + chr5.3:32590989-32591008 MS.gene054696:intron 25.0%
! GTTTGTATTGTATGATGATA+CGG + chr5.3:32589472-32589491 MS.gene054696:intron 25.0%
! TAATGCAGTTGTTGAATATT+AGG + chr5.3:32590021-32590040 MS.gene054696:intron 25.0%
! TACAAAAGAAAACATACACA+AGG - chr5.3:32591133-32591152 None:intergenic 25.0%
! TTGGAAAAATCTTGAAATTG+TGG + chr5.3:32590111-32590130 MS.gene054696:intron 25.0%
!! ATAGTGATTGTCCAAATTTT+GGG + chr5.3:32591599-32591618 MS.gene054696:intron 25.0%
!! ATTCGGGTTTATTACTTATA+CGG + chr5.3:32589076-32589095 MS.gene054696:intron 25.0%
!! TAAAGATGAGATTTTTATGC+CGG + chr5.3:32590690-32590709 MS.gene054696:intron 25.0%
!! TTTTTGTGTAATGTAGCTTT+TGG + chr5.3:32591676-32591695 MS.gene054696:intron 25.0%
!!! AGACTTCACTATTTTTCATT+TGG + chr5.3:32591375-32591394 MS.gene054696:intron 25.0%
!!! ATGAATTTTGACAATCGATT+TGG + chr5.3:32590484-32590503 MS.gene054696:intron 25.0%
!!! ATTTTTCGATAGATTACATG+AGG + chr5.3:32590153-32590172 MS.gene054696:intron 25.0%
!!! GACTTCACTATTTTTCATTT+GGG + chr5.3:32591376-32591395 MS.gene054696:intron 25.0%
!!! TAGTTAGTTTTTTGTAATGG+AGG + chr5.3:32589730-32589749 MS.gene054696:intron 25.0%
!!! TGAATTTTGACAATCGATTT+GGG + chr5.3:32590485-32590504 MS.gene054696:intron 25.0%
!!! TTGATTTGTTTGTTCATATC+AGG + chr5.3:32589247-32589266 MS.gene054696:intron 25.0%
AAAATATTCAAAGTGAAGGG+AGG + chr5.3:32589697-32589716 MS.gene054696:intron 30.0%
AAATATTCAAAGTGAAGGGA+GGG + chr5.3:32589698-32589717 MS.gene054696:intron 30.0%
AACTTAGTTATGCTTACACT+TGG + chr5.3:32591825-32591844 MS.gene054696:intron 30.0%
AAGAACTTCTTCTCAAAGTA+TGG + chr5.3:32589554-32589573 MS.gene054696:CDS 30.0%
AAGTGTAAGCATAACTAAGT+TGG - chr5.3:32591826-32591845 None:intergenic 30.0%
AATCAAGAGGACTATTACAA+AGG + chr5.3:32589274-32589293 MS.gene054696:CDS 30.0%
AATTAGAAATGAGAACAGGT+CGG + chr5.3:32589610-32589629 MS.gene054696:intron 30.0%
AGAACTTCTTCTCAAAGTAT+GGG + chr5.3:32589555-32589574 MS.gene054696:CDS 30.0%
AGTGATGCTCTAATTGAATA+AGG - chr5.3:32592089-32592108 None:intergenic 30.0%
ATAAGAGTTGAATCACAAGA+AGG + chr5.3:32592047-32592066 MS.gene054696:intron 30.0%
ATCAAGAGGACTATTACAAA+GGG + chr5.3:32589275-32589294 MS.gene054696:CDS 30.0%
CTAACTATTGAAAGCAATGT+GGG + chr5.3:32589848-32589867 MS.gene054696:intron 30.0%
CTGTAATTAGAAATGAGAAC+AGG + chr5.3:32589606-32589625 MS.gene054696:CDS 30.0%
CTGTTCTCATTTCTAATTAC+AGG - chr5.3:32589608-32589627 None:intergenic 30.0%
CTTATATCAGACAATAAACC+TGG - chr5.3:32592128-32592147 None:intergenic 30.0%
CTTTGTCCAACTAAGTTTAA+AGG - chr5.3:32591929-32591948 None:intergenic 30.0%
GTCAAAATTCATGCCAATAA+AGG - chr5.3:32590476-32590495 None:intergenic 30.0%
GTGATGCTCTAATTGAATAA+GGG - chr5.3:32592088-32592107 None:intergenic 30.0%
TAATGATCAATGTTCATCGA+TGG + chr5.3:32590223-32590242 MS.gene054696:intron 30.0%
TACTTCAAAAGTGAGCAAAA+TGG - chr5.3:32591645-32591664 None:intergenic 30.0%
TAGTAACTCTCTTTACTGTA+GGG + chr5.3:32591314-32591333 MS.gene054696:intron 30.0%
TCTCATTTCTAATTACAGGA+AGG - chr5.3:32589604-32589623 None:intergenic 30.0%
TGAAATTGTGGATAGATATG+TGG + chr5.3:32590123-32590142 MS.gene054696:intron 30.0%
TGTAATAACTTCAGCTAGTA+AGG - chr5.3:32591955-32591974 None:intergenic 30.0%
TGTGTACCTTTAAACTTAGT+TGG + chr5.3:32591920-32591939 MS.gene054696:intron 30.0%
TGTTGTTGATCAAGTTATTC+AGG + chr5.3:32589106-32589125 MS.gene054696:intron 30.0%
TTAAGAGTGATTACCACTAT+AGG - chr5.3:32590571-32590590 None:intergenic 30.0%
TTAGTAACTCTCTTTACTGT+AGG + chr5.3:32591313-32591332 MS.gene054696:intron 30.0%
TTGCTTTGTAATGCATGTTT+GGG + chr5.3:32590737-32590756 MS.gene054696:intron 30.0%
TTTGCACTTAACATAGATAC+CGG + chr5.3:32590909-32590928 MS.gene054696:intron 30.0%
TTTGCTTTGTAATGCATGTT+TGG + chr5.3:32590736-32590755 MS.gene054696:intron 30.0%
! AAGATATTGAGAGCTCTAAT+CGG + chr5.3:32590349-32590368 MS.gene054696:intron 30.0%
! ACTAAGAAGATTTTTGTTGG+TGG + chr5.3:32589323-32589342 MS.gene054696:CDS 30.0%
! GATAGTGATTGTCCAAATTT+TGG + chr5.3:32591598-32591617 MS.gene054696:intron 30.0%
! TGATGTTGAATATCTAGAGT+TGG + chr5.3:32589900-32589919 MS.gene054696:intron 30.0%
! TTACAAAAATGTTTGCTGCA+AGG + chr5.3:32591207-32591226 MS.gene054696:intron 30.0%
!!! AATGTAGCTTTTGGTTTTCA+AGG + chr5.3:32591685-32591704 MS.gene054696:intron 30.0%
!!! ACATTTTGAAATGCATGCAT+AGG - chr5.3:32591535-32591554 None:intergenic 30.0%
!!! ATGTAGCTTTTGGTTTTCAA+GGG + chr5.3:32591686-32591705 MS.gene054696:intron 30.0%
!!! CGAGCTTTTAAGTTTTTACT+TGG + chr5.3:32590092-32590111 MS.gene054696:intron 30.0%
AATATTCAAAGTGAAGGGAG+GGG + chr5.3:32589699-32589718 MS.gene054696:intron 35.0%
AGATTATTGTATGCTTGCCT+TGG + chr5.3:32589510-32589529 MS.gene054696:intron 35.0%
ATCAACAGTTCTGTCACTAA+TGG - chr5.3:32590546-32590565 None:intergenic 35.0%
ATGCTTATGTAGTTATGGGA+CGG + chr5.3:32590419-32590438 MS.gene054696:intron 35.0%
CACAAGGGTAACAAACTATA+TGG - chr5.3:32591117-32591136 None:intergenic 35.0%
CTATGTTGTGAATACAAACC+AGG + chr5.3:32592107-32592126 MS.gene054696:intron 35.0%
GAACTGTTGATATCCTATAG+TGG + chr5.3:32590555-32590574 MS.gene054696:intron 35.0%
GAACTTCTTCTCAAAGTATG+GGG + chr5.3:32589556-32589575 MS.gene054696:CDS 35.0%
GATTATTGTATGCTTGCCTT+GGG + chr5.3:32589511-32589530 MS.gene054696:intron 35.0%
GCTAACTATTGAAAGCAATG+TGG + chr5.3:32589847-32589866 MS.gene054696:intron 35.0%
GTTGGAATACAATGAAACTG+AGG - chr5.3:32592257-32592276 None:intergenic 35.0%
TAAAGAGCTTGCAAATATGC+AGG + chr5.3:32589924-32589943 MS.gene054696:intron 35.0%
TATGTGTTTGTGTTGAGTCT+GGG + chr5.3:32590839-32590858 MS.gene054696:intron 35.0%
TCACATCATCAATGACAAGA+AGG + chr5.3:32589133-32589152 MS.gene054696:CDS 35.0%
TCTAATCGGGCATAAGAATT+TGG + chr5.3:32590363-32590382 MS.gene054696:intron 35.0%
TGCTGAAGCAAAGAGTAATT+AGG + chr5.3:32589775-32589794 MS.gene054696:intron 35.0%
TTAGCAGATGAAAACAGCAA+TGG + chr5.3:32590300-32590319 MS.gene054696:intron 35.0%
TTATGTGTTTGTGTTGAGTC+TGG + chr5.3:32590838-32590857 MS.gene054696:intron 35.0%
! ACTCCATCAATTTGAAGTGT+CGG + chr5.3:32591089-32591108 MS.gene054696:intron 35.0%
! AGATATTGAGAGCTCTAATC+GGG + chr5.3:32590350-32590369 MS.gene054696:intron 35.0%
! AGCATTTTCTTCGTCTTCAT+AGG - chr5.3:32590404-32590423 None:intergenic 35.0%
! AGTGTCTGTATCAAAGTATC+CGG - chr5.3:32590964-32590983 None:intergenic 35.0%
! ATTACATGAGGTACCTTCAT+TGG + chr5.3:32590165-32590184 MS.gene054696:intron 35.0%
! CTTATCTCATCACTGTCTTT+TGG - chr5.3:32592032-32592051 None:intergenic 35.0%
! GATTTTTATGCCGGATTTGT+TGG + chr5.3:32590699-32590718 MS.gene054696:intron 35.0%
!! CATATCAGGTTGAAATCAAG+AGG + chr5.3:32589261-32589280 MS.gene054696:intron 35.0%
!! GTGTTGTTCGTTTTATTGCA+AGG + chr5.3:32592317-32592336 MS.gene054696:CDS 35.0%
!! TCACAAGAAGGTGGATTAAA+TGG + chr5.3:32592059-32592078 MS.gene054696:intron 35.0%
!! TCTAATTACAGGAAGGTGTT+CGG - chr5.3:32589597-32589616 None:intergenic 35.0%
AAAACGAACAACACGTTCTC+TGG - chr5.3:32592311-32592330 None:intergenic 40.0%
AAACCTTCAGATACAGTTGC+TGG - chr5.3:32589353-32589372 None:intergenic 40.0%
AACAGTTCTGTCACTAATGG+AGG - chr5.3:32590543-32590562 None:intergenic 40.0%
AATTGCATTAGGTGCAGCTA+AGG + chr5.3:32589965-32589984 MS.gene054696:intron 40.0%
AGAGTTGAATCACAAGAAGG+TGG + chr5.3:32592050-32592069 MS.gene054696:intron 40.0%
ATCTTCTTCTCTGCAAGAGA+GGG + chr5.3:32591399-32591418 MS.gene054696:intron 40.0%
ATTCCAGCAACTGTATCTGA+AGG + chr5.3:32589347-32589366 MS.gene054696:CDS 40.0%
GAAAACAGCAATGGCTATAG+AGG + chr5.3:32590309-32590328 MS.gene054696:intron 40.0%
TAACCATGACAGTATTGTGC+CGG + chr5.3:32591028-32591047 MS.gene054696:intron 40.0%
TGTGGATAGATATGTGGTTG+TGG + chr5.3:32590129-32590148 MS.gene054696:intron 40.0%
TTATGTAGTTATGGGACGGA+GGG + chr5.3:32590423-32590442 MS.gene054696:intron 40.0%
TTGTTGGATGCTGAGACAAT+TGG + chr5.3:32591564-32591583 MS.gene054696:intron 40.0%
! CTCTGGAAGAAGGTAACAAA+CGG - chr5.3:32592294-32592313 None:intergenic 40.0%
! TCATCTGAAACACAAACCCA+AGG - chr5.3:32589530-32589549 None:intergenic 40.0%
! TGAGTCTGGGATAGTTAAAC+TGG + chr5.3:32590852-32590871 MS.gene054696:intron 40.0%
!! TTTATGCCGGATTTGTTGGT+GGG + chr5.3:32590703-32590722 MS.gene054696:intron 40.0%
!!! TTTTATGCCGGATTTGTTGG+TGG + chr5.3:32590702-32590721 MS.gene054696:intron 40.0%
AAATGAACACCGGCGCATAT+CGG + chr5.3:32591056-32591075 MS.gene054696:intron 45.0%
AAGGGCAGAGATTGCAACTT+TGG + chr5.3:32592181-32592200 MS.gene054696:intron 45.0%
AATGCAGCACAAGCAAGTGA+AGG + chr5.3:32591996-32592015 MS.gene054696:intron 45.0%
AGGGCAGAGATTGCAACTTT+GGG + chr5.3:32592182-32592201 MS.gene054696:intron 45.0%
ATACCGGCACAATACTGTCA+TGG - chr5.3:32591034-32591053 None:intergenic 45.0%
ATGCAGCACAAGCAAGTGAA+GGG + chr5.3:32591997-32592016 MS.gene054696:intron 45.0%
CTGCAAGAGAGGGATTCATT+TGG + chr5.3:32591409-32591428 MS.gene054696:intron 45.0%
CTTATGTAGTTATGGGACGG+AGG + chr5.3:32590422-32590441 MS.gene054696:intron 45.0%
GATCTTCTTCTCTGCAAGAG+AGG + chr5.3:32591398-32591417 MS.gene054696:intron 45.0%
GCCGGTGTTCATTTCAATAC+CGG - chr5.3:32591050-32591069 None:intergenic 45.0%
GCTCAGCAGTATGAGTTTGA+TGG + chr5.3:32591772-32591791 MS.gene054696:intron 45.0%
GGGTCTAATATGACATTGCG+TGG + chr5.3:32591334-32591353 MS.gene054696:intron 45.0%
GGTTAAGTGTGTGAAGACTC+TGG + chr5.3:32590506-32590525 MS.gene054696:intron 45.0%
GTAATAAACCCGAATCCTCG+AGG - chr5.3:32589071-32589090 None:intergenic 45.0%
! ACAACACGTTCTCTGGAAGA+AGG - chr5.3:32592304-32592323 None:intergenic 45.0%
! GCACCGACACTTCAAATTGA+TGG - chr5.3:32591095-32591114 None:intergenic 45.0%
! GCCGGTATTGAAATGAACAC+CGG + chr5.3:32591046-32591065 MS.gene054696:intron 45.0%
!! ACGGAAACAGCACTGATAGT+TGG - chr5.3:32592275-32592294 None:intergenic 45.0%
AAGCGACCCACCAACAAATC+CGG - chr5.3:32590712-32590731 None:intergenic 50.0%
AATGAGAACAGGTCGGCATG+AGG + chr5.3:32589617-32589636 MS.gene054696:intron 50.0%
ATATGCCGTCCTCGAGGATT+CGG + chr5.3:32589059-32589078 MS.gene054696:intron 50.0%
TAAACCCGAATCCTCGAGGA+CGG - chr5.3:32589067-32589086 None:intergenic 50.0%
TGATTGATATGCCGTCCTCG+AGG + chr5.3:32589053-32589072 MS.gene054696:intron 50.0%
TTTGAGTGTCCGATATGCGC+CGG - chr5.3:32591068-32591087 None:intergenic 50.0%
!! GATTTGTTGGTGGGTCGCTT+GGG + chr5.3:32590712-32590731 MS.gene054696:intron 50.0%
TATGCCGTCCTCGAGGATTC+GGG + chr5.3:32589060-32589079 MS.gene054696:intron 55.0%
! AGGTGTTCGGCAGCTTGTTC+TGG - chr5.3:32589584-32589603 None:intergenic 55.0%
! GGTGTTCGGCAGCTTGTTCT+GGG - chr5.3:32589583-32589602 None:intergenic 55.0%
!! GGATTTGTTGGTGGGTCGCT+TGG + chr5.3:32590711-32590730 MS.gene054696:intron 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 32589036 32592366 32589036 ID=MS.gene054696
chr5.3 mRNA 32589036 32592366 32589036 ID=MS.gene054696.t1;Parent=MS.gene054696
chr5.3 exon 32589036 32589038 32589036 ID=MS.gene054696.t1.exon1;Parent=MS.gene054696.t1
chr5.3 CDS 32589036 32589038 32589036 ID=cds.MS.gene054696.t1;Parent=MS.gene054696.t1
chr5.3 exon 32589128 32589154 32589128 ID=MS.gene054696.t1.exon2;Parent=MS.gene054696.t1
chr5.3 CDS 32589128 32589154 32589128 ID=cds.MS.gene054696.t1;Parent=MS.gene054696.t1
chr5.3 exon 32589269 32589368 32589269 ID=MS.gene054696.t1.exon3;Parent=MS.gene054696.t1
chr5.3 CDS 32589269 32589368 32589269 ID=cds.MS.gene054696.t1;Parent=MS.gene054696.t1
chr5.3 exon 32589546 32589627 32589546 ID=MS.gene054696.t1.exon4;Parent=MS.gene054696.t1
chr5.3 CDS 32589546 32589627 32589546 ID=cds.MS.gene054696.t1;Parent=MS.gene054696.t1
chr5.3 exon 32592312 32592366 32592312 ID=MS.gene054696.t1.exon5;Parent=MS.gene054696.t1
chr5.3 CDS 32592312 32592366 32592312 ID=cds.MS.gene054696.t1;Parent=MS.gene054696.t1
Gene Sequence

>MS.gene054696

ATGGTCAAAATGCAAACTGATTGATATGCCGTCCTCGAGGATTCGGGTTTATTACTTATACGGATGCTTCTGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGACAAGAAGGTAAAACTGTAATTAGGGTTTCACTTGTGTTTTGTAGATTCAGTTTAATTTTTGATTTGGGCTGTTTGCAAGTGCTTACTTTGTTTTGATTGTTGATTTGTTTGTTCATATCAGGTTGAAATCAAGAGGACTATTACAAAGGGTGCATCTCAAACTAATGACTTTAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAGCAACTGTATCTGAAGGTTTGTGTTCAGCACTTTTGATTTTTTTGATCTCATACTAAATAATCAATGTACTTTGTGTTTTTTGATTTGTTTATATATTGTATGTGTATGTGTTTTGTTAGTTTGTATTGTATGATGATACGGTGTTGTGAGTTAATGAGATTATTGTATGCTTGCCTTGGGTTTGTGTTTCAGATGAGCTCAAGAACTTCTTCTCAAAGTATGGGGACCCAGAACAAGCTGCCGAACACCTTCCTGTAATTAGAAATGAGAACAGGTCGGCATGAGGAAAACAAATAAAATTATGACATTCAAGACAGAAACAGATAGCAGAACTAGAAATTAAAAAATATTCAAAGTGAAGGGAGGGGAAGCCTATTAGTTAGTTTTTTGTAATGGAGGAATGCTAAGCATTCTTCTAAAATGCTGAAGCAAAGAGTAATTAGGAAATAAATTATAAAAATTAGAAGAAATTTCTTGATGAAACAAAGTTTATGCTAACTATTGAAAGCAATGTGGGTTATGAGAGTAAATAAATATATAGGCTGTTGATGTTGAATATCTAGAGTTGGCTAAAGAGCTTGCAAATATGCAGGATTGTTGTAATCAATGAAAATTGCATTAGGTGCAGCTAAGGAAGTTTTTTCTGTGATTAATTTTTTGTCTCTTTTAATGCAGTTGTTGAATATTAGGGTTAACATGTTTATGAGTATTTTATGTCTTGTGTTCTATGCTGAGAATCGAGCTTTTAAGTTTTTACTTGGAAAAATCTTGAAATTGTGGATAGATATGTGGTTGTGGTATTTTTCGATAGATTACATGAGGTACCTTCATTGGATTTGTTTTCATTTCAGTCTTGTGAAAATTTATTGTAATGATCAATGTTCATCGATGGCTGTTAATTATTAAATAAGCTATGTGCTCTTTGTTCTTATATATTTGGGCAACGTTAGCAGATGAAAACAGCAATGGCTATAGAGGATGTAAGAAGAGAAGTGAAGATATTGAGAGCTCTAATCGGGCATAAGAATTTGGTATAATTCTACGAAGCCTATGAAGACGAAGAAAATGCTTATGTAGTTATGGGACGGAGGGAGTATTAACTTATTCAAACATATTTATCCTTTATTGGCATGAATTTTGACAATCGATTTGGGTTAAGTGTGTGAAGACTCTGGAAAAGCTCTGACCTCCATTAGTGACAGAACTGTTGATATCCTATAGTGGTAATCACTCTTAATCTTTTCACAAACTTCAATCCAAGTTACCCTTTTTATGTTATTATGATTTGAATTTTGATATATGTTAGTATTTTGTGATTTGAAGCTAGCCCATTTGCTAAAGATGAGATTTTTATGCCGGATTTGTTGGTGGGTCGCTTGGGTTTTGCTTTGTAATGCATGTTTGGGAGTAATTTTTATTTCTTTATATTTCTATTTTATTTATTTGTAATTTATTTGCTTTAATTTTGAATCATTTTGAGCATGTTATGTGTTTGTGTTGAGTCTGGGATAGTTAAACTGGTAAAGCACTGCTTTATTGTGAGAACTTTTGTGTTTTTGCACTTAACATAGATACCGGATACTTCAAAAAAAAAAAAAAAAAAGATACCGGATACTTTGATACAGACACTAACATGTAGACACCTATAATAATTTAGGAAAATATAATTGTATGTAACCATGACAGTATTGTGCCGGTATTGAAATGAACACCGGCGCATATCGGACACTCAAACACTCCATCAATTTGAAGTGTCGGTGCCATATAGTTTGTTACCCTTGTGTATGTTTTCTTTTGTAGATTAATGGCAACTGTCAATTGTGAATTCTAAATTTTTTAGAACTTTTGAAATATTACAAAAATGTTTGCTGCAAGGTGAGCTTATTTTATCTCTCAGCTCAAATTATAAGCTTATTCTAAGAAACTTATTAGTTGCTATAATTCTCTGTGCCATTTTTGTTAGTAACTCTCTTTACTGTAGGGTCTAATATGACATTGCGTGGCAAGCTTGAGATGAAATCAGACTTCACTATTTTTCATTTGGGATCTTCTTCTCTGCAAGAGAGGGATTCATTTGGTAAGATTCTTTTCCGATTTCAATGAAAGAATAGCTTTGACTATATATAAATGTGCATTTATACTGAAGTTTTAAGTTTTAACTATAAGTCTCAAGCTATGCCTATGCATGCATTTCAAAATGTAGTAAGTGTTTGTTGGATGCTGAGACAATTGGAGTTGAAATCAGATAGTGATTGTCCAAATTTTGGGATACATATATGTCAGTAAAGCCATTTTGCTCACTTTTGAAGTATTGATTCTTCTTTTTTGTGTAATGTAGCTTTTGGTTTTCAAGGGACAAAGTTCAATTTTCTTTTCTAAAAGAAGGGAATAGAATAATTTAATTTTGGAGTAGCAAGAGCTCAGCAGTATGAGTTTGATGGTATTAAAAAAAATGTTAATATTAACTGTCCAACTTAGTTATGCTTACACTTGGAATCGTGAAATTCATGTCTACACAAGCATACAAACATGATATATATGTTAATCTTTCAGAATCTAACATTTTTGTGTACCTTTAAACTTAGTTGGACAAAGCATCCTTACTAGCTGAAGTTATTACACATTTGAAAGAGCTGAAAACAAATGCAGCACAAGCAAGTGAAGGGTTAATTATTCCAAAAGACAGTGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCACTATGTTGTGAATACAAACCAGGTTTATTGTCTGATATAAGAAAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTGGGAAGTTCATAGTTTAATGTGTATTGAAGGGTTTATATATATTGTTAACTTCCTCAGTTTCATTGTATTCCAACTATCAGTGCTGTTTCCGTTTGTTACCTTCTTCCAGAGAACGTGTTGTTCGTTTTATTGCAAGGTATCGTTCTCCTCATTCCATCGATTGA
Protein sequence

>MS.gene054696.t1

MENHIINDKKVEIKRTITKGASQTNDFKTKKIFVGGIPATVSEDELKNFFSKYGDPEQAAEHLPVIRNENRERVVRFIARYRSPHSID