Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61331.t1 | XP_003601524.2 | 87 | 46 | 6 | 0 | 7 | 52 | 86 | 131 | 7.60E-12 | 80.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61331.t1 | G7J8U4 | 87.0 | 46 | 6 | 0 | 7 | 52 | 86 | 131 | 5.5e-12 | 80.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050844 | MS.gene61331 | 0.80355 | 3.30E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene61331 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene053146 | MS.gene61331 | 0.812841 | 3.46E-51 | -1.69E-46 |
| MS.gene054582 | MS.gene61331 | 0.812555 | 4.00E-51 | -1.69E-46 |
| MS.gene054696 | MS.gene61331 | 0.869214 | 3.66E-66 | -1.69E-46 |
| MS.gene055818 | MS.gene61331 | 0.802833 | 4.65E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene61331 | 0.819084 | 1.40E-52 | -1.69E-46 |
| MS.gene057736 | MS.gene61331 | 0.818599 | 1.80E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene61331 | 0.823471 | 1.36E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene61331 | 0.817102 | 3.92E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene61331 | 0.806087 | 9.75E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61331.t1 | MTR_3g082650 | 86.957 | 46 | 6 | 0 | 7 | 52 | 86 | 131 | 4.91e-18 | 81.3 |
| MS.gene61331.t1 | MTR_6g004810 | 60.870 | 46 | 18 | 0 | 7 | 52 | 113 | 158 | 1.21e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61331.t1 | AT3G13224 | 70.833 | 48 | 12 | 1 | 7 | 52 | 87 | 134 | 1.70e-14 | 70.1 |
| MS.gene61331.t1 | AT3G13224 | 70.833 | 48 | 12 | 1 | 7 | 52 | 87 | 134 | 5.32e-14 | 69.7 |
| MS.gene61331.t1 | AT3G13224 | 70.833 | 48 | 12 | 1 | 7 | 52 | 78 | 125 | 6.09e-14 | 69.7 |
| MS.gene61331.t1 | AT5G40490 | 60.870 | 46 | 18 | 0 | 7 | 52 | 93 | 138 | 2.35e-12 | 65.1 |
| MS.gene61331.t1 | AT5G40490 | 60.870 | 46 | 18 | 0 | 7 | 52 | 110 | 155 | 4.19e-12 | 64.7 |
Find 41 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTGTTCGGCAGCTTGTTC+TGG | 0.174611 | 6.3:+81120724 | None:intergenic |
| AAGAACTTCTTCTCAAAGTA+TGG | 0.233679 | 6.3:-81120751 | MS.gene61331:CDS |
| ATATGCCGTCCTCGAGGATT+CGG | 0.289741 | 6.3:-81121247 | MS.gene61331:CDS |
| TCTAATCGGGCATAAGAATT+TGG | 0.305782 | 6.3:-81119942 | MS.gene61331:intron |
| AAAACGAACAACACGTTCTC+TGG | 0.368321 | 6.3:+81118039 | None:intergenic |
| GGTGTTCGGCAGCTTGTTCT+GGG | 0.389840 | 6.3:+81120725 | None:intergenic |
| TATGCCGTCCTCGAGGATTC+GGG | 0.392313 | 6.3:-81121246 | MS.gene61331:intron |
| TTAAGAGTGATTACCACTAT+AGG | 0.420417 | 6.3:+81119737 | None:intergenic |
| ACCCTTTGTAATAGTCCTCT+TGG | 0.426530 | 6.3:+81121029 | None:intergenic |
| CTGCAAGAGAGGGATTCATT+TGG | 0.438914 | 6.3:-81118940 | MS.gene61331:intron |
| ATCAACAGTTCTGTCACTAA+TGG | 0.442237 | 6.3:+81119762 | None:intergenic |
| AAGATATTGAGAGCTCTAAT+CGG | 0.445132 | 6.3:-81119956 | MS.gene61331:CDS |
| TTTCAGGCTTTGGCAGATGA+TGG | 0.458855 | 6.3:-81116696 | MS.gene61331:intron |
| GACAACAGCAATTGCTATAG+AGG | 0.467919 | 6.3:-81119996 | MS.gene61331:CDS |
| ACGGAAACAACTCTGATAGT+TGG | 0.468629 | 6.3:+81118075 | None:intergenic |
| AAACCTTCAGATACAGTTGC+TGG | 0.469643 | 6.3:+81120955 | None:intergenic |
| TCTAATTACAGGAAGGTGTT+CGG | 0.480701 | 6.3:+81120711 | None:intergenic |
| AACCAAGAGGACTATTACAA+AGG | 0.488658 | 6.3:-81121031 | MS.gene61331:CDS |
| TTGTTACTGGATGTTGCAAA+CGG | 0.499730 | 6.3:+81117516 | None:intergenic |
| ACCAAGAGGACTATTACAAA+GGG | 0.508916 | 6.3:-81121030 | MS.gene61331:CDS |
| ATCTTCTTCTCTGCAAGAGA+GGG | 0.514554 | 6.3:-81118950 | MS.gene61331:CDS |
| TATATCAAGCATGAGGGAAG+TGG | 0.521879 | 6.3:+81116655 | None:intergenic |
| AGAACTTCTTCTCAAAGTAT+GGG | 0.527076 | 6.3:-81120750 | MS.gene61331:CDS |
| AGATATTGAGAGCTCTAATC+GGG | 0.529013 | 6.3:-81119955 | MS.gene61331:CDS |
| CTCTGGAAGAAGGTAACAAA+CGG | 0.530633 | 6.3:+81118056 | None:intergenic |
| GGTTAAGTGTGTGAAGACTC+TGG | 0.535656 | 6.3:-81119799 | MS.gene61331:intron |
| GAACTGTTGATATCCTATAG+TGG | 0.540081 | 6.3:-81119750 | MS.gene61331:intron |
| ACAACGACTTCGCTTGCTTG+AGG | 0.568300 | 6.3:+81117551 | None:intergenic |
| ACAACACGTTCTCTGGAAGA+AGG | 0.576475 | 6.3:+81118046 | None:intergenic |
| ATTCCAGCAACTGTATCTGA+AGG | 0.581606 | 6.3:-81120958 | MS.gene61331:intron |
| CTGGATGTTGCAAACGGACA+AGG | 0.583846 | 6.3:+81117522 | None:intergenic |
| CTATCTATATATCAAGCATG+AGG | 0.584937 | 6.3:+81116648 | None:intergenic |
| AACAGTTCTGTCACTAATGG+AGG | 0.594015 | 6.3:+81119765 | None:intergenic |
| GATCTTCTTCTCTGCAAGAG+AGG | 0.603243 | 6.3:-81118951 | MS.gene61331:CDS |
| TATCTATATATCAAGCATGA+GGG | 0.619581 | 6.3:+81116649 | None:intergenic |
| GGGTCTAATATGACATTGCG+TGG | 0.621343 | 6.3:-81119015 | MS.gene61331:CDS |
| GAACTTCTTCTCAAAGTATG+GGG | 0.639196 | 6.3:-81120749 | MS.gene61331:CDS |
| TAAACCCGAATCCTCGAGGA+CGG | 0.641355 | 6.3:+81121242 | None:intergenic |
| GTAATAAACCCGAATCCTCG+AGG | 0.647085 | 6.3:+81121238 | None:intergenic |
| CATATCAGGTTGAAACCAAG+AGG | 0.664183 | 6.3:-81121044 | MS.gene61331:intron |
| TGATTGATATGCCGTCCTCG+AGG | 0.702496 | 6.3:-81121253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAGATAC+CGG | - | chr6.3:81118538-81118557 | MS.gene61331:intron | 10.0% |
| !! | AAATCATAATAACATAAAAA+GGG | + | chr6.3:81118220-81118239 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTAACATTAAA+AGG | - | chr6.3:81120808-81120827 | MS.gene61331:intron | 10.0% |
| !!! | AGTTTTTTTTAACATTAAAA+GGG | - | chr6.3:81120809-81120828 | MS.gene61331:intron | 10.0% |
| !!! | TATTTTCTTTTGTATATTAA+TGG | - | chr6.3:81118735-81118754 | MS.gene61331:intron | 10.0% |
| !!! | TTTTTTTTTTTTGAAGTATT+TGG | + | chr6.3:81118530-81118549 | None:intergenic | 10.0% |
| !! | AAATTAAATTGAAGATTTGA+AGG | - | chr6.3:81120471-81120490 | MS.gene61331:intron | 15.0% |
| !! | AGAAATGTAAATATCAAATA+TGG | + | chr6.3:81121000-81121019 | None:intergenic | 15.0% |
| !! | ATGAGAGTAAATAAATATAT+AGG | - | chr6.3:81117472-81117491 | MS.gene61331:intron | 15.0% |
| !! | ATTACAAAAAACTAACTAAT+AGG | + | chr6.3:81117327-81117346 | None:intergenic | 15.0% |
| !! | CAAATCATAATAACATAAAA+AGG | + | chr6.3:81118221-81118240 | None:intergenic | 15.0% |
| !! | TAAAAAATATTCAAAGTGAA+GGG | - | chr6.3:81117293-81117312 | MS.gene61331:intron | 15.0% |
| !! | TGAAATATTACAAAAATGTT+TGG | - | chr6.3:81118796-81118815 | MS.gene61331:intron | 15.0% |
| !! | TGTCTACTTAAAAAATATTA+TGG | - | chr6.3:81120430-81120449 | MS.gene61331:intron | 15.0% |
| !! | TTAAAAAATATTCAAAGTGA+AGG | - | chr6.3:81117292-81117311 | MS.gene61331:intron | 15.0% |
| !!! | AATTTTCTTTTCTAAAAGAA+GGG | - | chr6.3:81119274-81119293 | MS.gene61331:intron | 15.0% |
| !!! | ACATTTTCCTAAATTATTAT+AGG | + | chr6.3:81118595-81118614 | None:intergenic | 15.0% |
| !!! | ATATAATTTTAGAGAACTAT+TGG | + | chr6.3:81121061-81121080 | None:intergenic | 15.0% |
| !!! | ATATTGAATTTTCTTTTTTC+AGG | - | chr6.3:81121192-81121211 | MS.gene61331:intron | 15.0% |
| !!! | ATTCAGTTTAATTTTTGATT+TGG | - | chr6.3:81116791-81116810 | MS.gene61331:intron | 15.0% |
| !!! | GGAATAGAATAATTTAATTT+TGG | - | chr6.3:81119295-81119314 | MS.gene61331:intron | 15.0% |
| !!! | GTTTTTTTTAACATTAAAAG+GGG | - | chr6.3:81120810-81120829 | MS.gene61331:intron | 15.0% |
| !!! | TATTAGTTAGTTTTTTGTAA+TGG | - | chr6.3:81117326-81117345 | MS.gene61331:intron | 15.0% |
| !!! | TTATCTTTTTTAAATTCTGA+TGG | - | chr6.3:81120162-81120181 | MS.gene61331:intron | 15.0% |
| !!! | TTCAGTTTAATTTTTGATTT+GGG | - | chr6.3:81116792-81116811 | MS.gene61331:intron | 15.0% |
| !! | ACAAAAGAAAATATACACAA+GGG | + | chr6.3:81118728-81118747 | None:intergenic | 20.0% |
| !! | ACTTCATCTTATGATAATAA+GGG | - | chr6.3:81119720-81119739 | MS.gene61331:intron | 20.0% |
| !! | ATATTTACATTTCTACATCA+TGG | - | chr6.3:81121006-81121025 | MS.gene61331:CDS | 20.0% |
| !! | ATTTCTATTGTTCTATTCAT+AGG | - | chr6.3:81120602-81120621 | MS.gene61331:intron | 20.0% |
| !! | ATTTGAATGCAAGAAAAAAA+AGG | - | chr6.3:81120634-81120653 | MS.gene61331:intron | 20.0% |
| !! | CAAACATATTTATCCTTTAT+TGG | - | chr6.3:81118059-81118078 | MS.gene61331:CDS | 20.0% |
| !! | CTCTTTGTTCTTATATATTT+GGG | - | chr6.3:81117871-81117890 | MS.gene61331:intron | 20.0% |
| !! | TAATCAATGAAAATTGCATT+AGG | - | chr6.3:81117553-81117572 | MS.gene61331:CDS | 20.0% |
| !! | TACAAAAGAAAATATACACA+AGG | + | chr6.3:81118729-81118748 | None:intergenic | 20.0% |
| !! | TGCACATTTATATATAGTAA+AGG | + | chr6.3:81119023-81119042 | None:intergenic | 20.0% |
| !!! | AAAACTAAGAAGATTTTTGT+TGG | - | chr6.3:81116919-81116938 | MS.gene61331:intron | 20.0% |
| !!! | AATATCAAATCATTCTTTTC+TGG | + | chr6.3:81120953-81120972 | None:intergenic | 20.0% |
| !!! | AGAATAATTTAATTTTGGAG+TGG | - | chr6.3:81119300-81119319 | MS.gene61331:intron | 20.0% |
| !!! | ATCAGTAGATCTTTTTTAAA+CGG | - | chr6.3:81121098-81121117 | MS.gene61331:intron | 20.0% |
| !!! | ATTTTTGATCCATACTATAA+TGG | - | chr6.3:81120301-81120320 | MS.gene61331:intron | 20.0% |
| !!! | CAATTTTCTTTTCTAAAAGA+AGG | - | chr6.3:81119273-81119292 | MS.gene61331:intron | 20.0% |
| ! | AAAATCTCATCTTTAGCAAA+TGG | + | chr6.3:81118284-81118303 | None:intergenic | 25.0% |
| ! | AAAATGTAGTAAGTGTTTGT+TGG | - | chr6.3:81119103-81119122 | MS.gene61331:intron | 25.0% |
| ! | AAATCTCATCTTTAGCAAAT+GGG | + | chr6.3:81118283-81118302 | None:intergenic | 25.0% |
| ! | AAGAAGGTAAAACTGTAATT+AGG | - | chr6.3:81116747-81116766 | MS.gene61331:intron | 25.0% |
| ! | AAGAGAGTTACTAACAAAAA+TGG | + | chr6.3:81118862-81118881 | None:intergenic | 25.0% |
| ! | AATGAAAACAAATCCAATGA+AGG | + | chr6.3:81117780-81117799 | None:intergenic | 25.0% |
| ! | AATTTCATTATAGGGGAATT+TGG | - | chr6.3:81120783-81120802 | MS.gene61331:intron | 25.0% |
| ! | AGAAAATGCTTATGTAGTTA+TGG | - | chr6.3:81118013-81118032 | MS.gene61331:intron | 25.0% |
| ! | AGAAGGTAAAACTGTAATTA+GGG | - | chr6.3:81116748-81116767 | MS.gene61331:intron | 25.0% |
| ! | ATAACATAAAAAGGGTAACT+TGG | + | chr6.3:81118212-81118231 | None:intergenic | 25.0% |
| ! | ATAGTTTAATGTGTCTTGAA+GGG | - | chr6.3:81119768-81119787 | MS.gene61331:CDS | 25.0% |
| ! | ATCAGAAAAAACTGATATGT+TGG | + | chr6.3:81120720-81120739 | None:intergenic | 25.0% |
| ! | ATGGATCAAAAATAAGAACA+TGG | + | chr6.3:81120294-81120313 | None:intergenic | 25.0% |
| ! | CAAAAATTGAAACATGCAAT+AGG | + | chr6.3:81120004-81120023 | None:intergenic | 25.0% |
| ! | CACTTCATCTTATGATAATA+AGG | - | chr6.3:81119719-81119738 | MS.gene61331:intron | 25.0% |
| ! | CATATATGTATCCCAAAATT+TGG | + | chr6.3:81119168-81119187 | None:intergenic | 25.0% |
| ! | GAAAATGCTTATGTAGTTAT+GGG | - | chr6.3:81118014-81118033 | MS.gene61331:intron | 25.0% |
| ! | GACAGATAAAATATACAAAG+TGG | - | chr6.3:81121147-81121166 | MS.gene61331:intron | 25.0% |
| ! | GATTAACTGTAAAAGATGAT+TGG | - | chr6.3:81119935-81119954 | MS.gene61331:intron | 25.0% |
| ! | GATTTGATATTAGCATTCTT+GGG | - | chr6.3:81120962-81120981 | MS.gene61331:CDS | 25.0% |
| ! | GCTCTTTGTTCTTATATATT+TGG | - | chr6.3:81117870-81117889 | MS.gene61331:intron | 25.0% |
| ! | GGTTATTCTTTCATTGAAAT+CGG | + | chr6.3:81119002-81119021 | None:intergenic | 25.0% |
| ! | GTAGACACCTATAATAATTT+AGG | - | chr6.3:81118585-81118604 | MS.gene61331:intron | 25.0% |
| ! | GTTTGTATTGTATGATGATA+CGG | - | chr6.3:81117071-81117090 | MS.gene61331:intron | 25.0% |
| ! | TGATTTGATATTAGCATTCT+TGG | - | chr6.3:81120961-81120980 | MS.gene61331:CDS | 25.0% |
| ! | TGCTGTTGAATTTCATTATA+GGG | - | chr6.3:81120775-81120794 | MS.gene61331:intron | 25.0% |
| ! | TGTTATTGATCAAGTTATTC+AGG | - | chr6.3:81116704-81116723 | MS.gene61331:intron | 25.0% |
| ! | TTGGAAAAATCTTGAAATTG+TGG | - | chr6.3:81117710-81117729 | MS.gene61331:intron | 25.0% |
| ! | TTGTTCTCATTTCTAATTAC+AGG | + | chr6.3:81117207-81117226 | None:intergenic | 25.0% |
| ! | TTTGTCCAACTAAGTTTAAA+AGG | + | chr6.3:81119485-81119504 | None:intergenic | 25.0% |
| !! | AACATCCAGTAACAAATTTT+AGG | - | chr6.3:81120396-81120415 | MS.gene61331:intron | 25.0% |
| !! | AATGCAGTTGTTGATTATTA+GGG | - | chr6.3:81117621-81117640 | MS.gene61331:intron | 25.0% |
| !! | ACATCCAGTAACAAATTTTA+GGG | - | chr6.3:81120397-81120416 | MS.gene61331:intron | 25.0% |
| !! | ATAGTGATTGTCCAAATTTT+GGG | - | chr6.3:81119154-81119173 | MS.gene61331:intron | 25.0% |
| !! | ATTCGGGTTTATTACTTATA+CGG | - | chr6.3:81116674-81116693 | MS.gene61331:CDS | 25.0% |
| !! | TAATGCAGTTGTTGATTATT+AGG | - | chr6.3:81117620-81117639 | MS.gene61331:intron | 25.0% |
| !! | TGTTATTCTACATTTTCGTT+GGG | - | chr6.3:81120022-81120041 | MS.gene61331:intron | 25.0% |
| !! | TTGCTGTTGAATTTCATTAT+AGG | - | chr6.3:81120774-81120793 | MS.gene61331:intron | 25.0% |
| !! | TTTTTGTGTAATGTAGCTTT+TGG | - | chr6.3:81119232-81119251 | MS.gene61331:intron | 25.0% |
| !!! | AATTTTCTTTTTTCAGGCTT+TGG | - | chr6.3:81121198-81121217 | MS.gene61331:intron | 25.0% |
| !!! | AGACTTCACTATTTTTCATT+TGG | - | chr6.3:81118930-81118949 | MS.gene61331:intron | 25.0% |
| !!! | ATCTTTTTTAAACGGCAATT+TGG | - | chr6.3:81121106-81121125 | MS.gene61331:intron | 25.0% |
| !!! | ATGAATTTTGACAATCGATT+TGG | - | chr6.3:81118083-81118102 | MS.gene61331:CDS | 25.0% |
| !!! | ATTTTTCGATAGATTACATG+AGG | - | chr6.3:81117752-81117771 | MS.gene61331:intron | 25.0% |
| !!! | CATTATGTTTTGGATATCTT+TGG | - | chr6.3:81120088-81120107 | MS.gene61331:intron | 25.0% |
| !!! | GACTTCACTATTTTTCATTT+GGG | - | chr6.3:81118931-81118950 | MS.gene61331:intron | 25.0% |
| !!! | GATATGATTTTAGAAGTTTG+TGG | - | chr6.3:81120204-81120223 | MS.gene61331:intron | 25.0% |
| !!! | TAGTTAGTTTTTTGTAATGG+AGG | - | chr6.3:81117329-81117348 | MS.gene61331:intron | 25.0% |
| !!! | TGAATTTTGACAATCGATTT+GGG | - | chr6.3:81118084-81118103 | MS.gene61331:CDS | 25.0% |
| !!! | TTGATTTGTTTGTTCATATC+AGG | - | chr6.3:81116846-81116865 | MS.gene61331:intron | 25.0% |
| !!! | TTGTTATTCTACATTTTCGT+TGG | - | chr6.3:81120021-81120040 | MS.gene61331:intron | 25.0% |
| AAAATATTCAAAGTGAAGGG+AGG | - | chr6.3:81117296-81117315 | MS.gene61331:intron | 30.0% | |
| AAATAAGAACATGGAGAAGA+TGG | + | chr6.3:81120285-81120304 | None:intergenic | 30.0% | |
| AAATATTCAAAGTGAAGGGA+GGG | - | chr6.3:81117297-81117316 | MS.gene61331:intron | 30.0% | |
| AACTTAGTTATGCTTACACA+TGG | - | chr6.3:81119381-81119400 | MS.gene61331:intron | 30.0% | |
| AAGAAACACCTGACAAAAAA+TGG | - | chr6.3:81120913-81120932 | MS.gene61331:intron | 30.0% | |
| AAGAACTTCTTCTCAAAGTA+TGG | - | chr6.3:81117153-81117172 | MS.gene61331:intron | 30.0% | |
| ACTTCAAAAAGTGAGCAAAA+TGG | + | chr6.3:81119200-81119219 | None:intergenic | 30.0% | |
| AGAACTTCTTCTCAAAGTAT+GGG | - | chr6.3:81117154-81117173 | MS.gene61331:intron | 30.0% | |
| AGTGATGCTCTAATTGAATA+AGG | + | chr6.3:81119646-81119665 | None:intergenic | 30.0% | |
| ATAAGAGTTGAATCACAAGA+AGG | - | chr6.3:81119604-81119623 | MS.gene61331:intron | 30.0% | |
| ATGTGTAAGCATAACTAAGT+TGG | + | chr6.3:81119382-81119401 | None:intergenic | 30.0% | |
| CATAGTTTAATGTGTCTTGA+AGG | - | chr6.3:81119767-81119786 | MS.gene61331:CDS | 30.0% | |
| CTAACTATTGAAAGCAATGT+GGG | - | chr6.3:81117447-81117466 | MS.gene61331:intron | 30.0% | |
| CTTATATCAGACAATAAACC+TGG | + | chr6.3:81119685-81119704 | None:intergenic | 30.0% | |
| GCTCAAGCTAAAAATTTAAG+AGG | + | chr6.3:81120334-81120353 | None:intergenic | 30.0% | |
| GCTGTTGAATTTCATTATAG+GGG | - | chr6.3:81120776-81120795 | MS.gene61331:intron | 30.0% | |
| GTCAAAATTCATGCCAATAA+AGG | + | chr6.3:81118075-81118094 | None:intergenic | 30.0% | |
| GTGATGCTCTAATTGAATAA+GGG | + | chr6.3:81119645-81119664 | None:intergenic | 30.0% | |
| TAAAGAGTTTGCAAATATGC+AGG | - | chr6.3:81117523-81117542 | MS.gene61331:CDS | 30.0% | |
| TAATGATCAATGTTCATCGA+TGG | - | chr6.3:81117822-81117841 | MS.gene61331:intron | 30.0% | |
| TAGTAACTCTCTTTACTGTA+GGG | - | chr6.3:81118869-81118888 | MS.gene61331:intron | 30.0% | |
| TCGATTTCAATTTCAATCGA+TGG | + | chr6.3:81119917-81119936 | None:intergenic | 30.0% | |
| TCTCATTTCTAATTACAGGA+AGG | + | chr6.3:81117203-81117222 | None:intergenic | 30.0% | |
| TGAAATTGTGGATAGATATG+CGG | - | chr6.3:81117722-81117741 | MS.gene61331:intron | 30.0% | |
| TGTAATAACTTCAGCTAGTA+AGG | + | chr6.3:81119512-81119531 | None:intergenic | 30.0% | |
| TTAAGAGTGATTACCACTAT+AGG | + | chr6.3:81118170-81118189 | None:intergenic | 30.0% | |
| TTAGTAACTCTCTTTACTGT+AGG | - | chr6.3:81118868-81118887 | MS.gene61331:intron | 30.0% | |
| ! | AAGATATTGAGAGCTCTAAT+CGG | - | chr6.3:81117948-81117967 | MS.gene61331:intron | 30.0% |
| ! | ACTAAGAAGATTTTTGTTGG+TGG | - | chr6.3:81116922-81116941 | MS.gene61331:intron | 30.0% |
| ! | ACTGTAAAAGATGATTGGTT+TGG | - | chr6.3:81119940-81119959 | MS.gene61331:intron | 30.0% |
| ! | AGATTTTTATGCCGAATTGT+TGG | - | chr6.3:81118297-81118316 | MS.gene61331:intron | 30.0% |
| ! | AGGGTCTTTTCATTATGTTT+TGG | - | chr6.3:81120078-81120097 | MS.gene61331:intron | 30.0% |
| ! | GATAGTGATTGTCCAAATTT+TGG | - | chr6.3:81119153-81119172 | MS.gene61331:intron | 30.0% |
| ! | GTGTACCTTTTAAACTTAGT+TGG | - | chr6.3:81119477-81119496 | MS.gene61331:intron | 30.0% |
| ! | TGATGTTGATTATCTAGAGT+TGG | - | chr6.3:81117499-81117518 | MS.gene61331:intron | 30.0% |
| ! | TGGTTGCATGTTTTCAAAAA+GGG | - | chr6.3:81120059-81120078 | MS.gene61331:intron | 30.0% |
| ! | TTGGTTGCATGTTTTCAAAA+AGG | - | chr6.3:81120058-81120077 | MS.gene61331:intron | 30.0% |
| !! | CAGTAACAAATTTTAGGGAA+AGG | - | chr6.3:81120402-81120421 | MS.gene61331:intron | 30.0% |
| !! | CTTTCCCTAAAATTTGTTAC+TGG | + | chr6.3:81120404-81120423 | None:intergenic | 30.0% |
| !! | GATGCTACATTGTATTTTAG+AGG | - | chr6.3:81120542-81120561 | MS.gene61331:intron | 30.0% |
| !! | GGTCATTTTCCATTATAGTA+TGG | + | chr6.3:81120313-81120332 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGCACTTAACAT+AGG | - | chr6.3:81118502-81118521 | MS.gene61331:intron | 30.0% |
| !! | TGTTGTTCGTTTTATTGCAA+AGG | - | chr6.3:81119875-81119894 | MS.gene61331:intron | 30.0% |
| !! | TGTTTTGGATATCTTTGGTT+AGG | - | chr6.3:81120093-81120112 | MS.gene61331:intron | 30.0% |
| !!! | AATGTAGCTTTTGGTTTTCA+AGG | - | chr6.3:81119241-81119260 | MS.gene61331:intron | 30.0% |
| !!! | ACATTTTGAAATGCATGCAT+AGG | + | chr6.3:81119090-81119109 | None:intergenic | 30.0% |
| !!! | ATGTAGCTTTTGGTTTTCAA+GGG | - | chr6.3:81119242-81119261 | MS.gene61331:intron | 30.0% |
| !!! | CGAGCTTTTAAGTTTTTACT+TGG | - | chr6.3:81117691-81117710 | MS.gene61331:intron | 30.0% |
| !!! | TTAGTGAACCATTTTTTGTC+AGG | + | chr6.3:81120924-81120943 | None:intergenic | 30.0% |
| AACCAAGAGGACTATTACAA+AGG | - | chr6.3:81116873-81116892 | MS.gene61331:intron | 35.0% | |
| AATATTCAAAGTGAAGGGAG+GGG | - | chr6.3:81117298-81117317 | MS.gene61331:intron | 35.0% | |
| ACCAAGAGGACTATTACAAA+GGG | - | chr6.3:81116874-81116893 | MS.gene61331:intron | 35.0% | |
| ATCAACAGTTCTGTCACTAA+TGG | + | chr6.3:81118145-81118164 | None:intergenic | 35.0% | |
| ATGCTTATGTAGTTATGGGA+CGG | - | chr6.3:81118018-81118037 | MS.gene61331:intron | 35.0% | |
| ATGTGTTTGTGTTTGAGTCT+GGG | - | chr6.3:81118438-81118457 | MS.gene61331:intron | 35.0% | |
| CAATTTCAATCGATGGAATG+AGG | + | chr6.3:81119910-81119929 | None:intergenic | 35.0% | |
| CACAAGGGTAACAAACTATA+TGG | + | chr6.3:81118713-81118732 | None:intergenic | 35.0% | |
| CTATGTTGTCAATACAAACC+AGG | - | chr6.3:81119664-81119683 | MS.gene61331:intron | 35.0% | |
| GAACTGTTGATATCCTATAG+TGG | - | chr6.3:81118154-81118173 | MS.gene61331:intron | 35.0% | |
| GAACTTCTTCTCAAAGTATG+GGG | - | chr6.3:81117155-81117174 | MS.gene61331:intron | 35.0% | |
| GATTTCTGAGTCAACTTCAA+TGG | - | chr6.3:81120226-81120245 | MS.gene61331:intron | 35.0% | |
| GCATCAAAATGAACCATTAG+AGG | + | chr6.3:81120527-81120546 | None:intergenic | 35.0% | |
| GCTAACTATTGAAAGCAATG+TGG | - | chr6.3:81117446-81117465 | MS.gene61331:intron | 35.0% | |
| GTTGGAATACAATGAAACTG+AGG | + | chr6.3:81119814-81119833 | None:intergenic | 35.0% | |
| TAACCATGTCAGTATTGTGT+CGG | - | chr6.3:81118624-81118643 | MS.gene61331:intron | 35.0% | |
| TATGTGTTTGTGTTTGAGTC+TGG | - | chr6.3:81118437-81118456 | MS.gene61331:intron | 35.0% | |
| TCACATCATCAATGACAAGA+AGG | - | chr6.3:81116731-81116750 | MS.gene61331:intron | 35.0% | |
| TCTAATCGGGCATAAGAATT+TGG | - | chr6.3:81117962-81117981 | MS.gene61331:intron | 35.0% | |
| TGCTGAAGCAAAGAGTAATT+AGG | - | chr6.3:81117374-81117393 | MS.gene61331:intron | 35.0% | |
| TTGCTTTGTAATGCACGTTT+GGG | - | chr6.3:81118335-81118354 | MS.gene61331:intron | 35.0% | |
| TTGGATCACAACTTTCTTAC+AGG | + | chr6.3:81120259-81120278 | None:intergenic | 35.0% | |
| TTGGATCAGTAGATCATAAC+AGG | - | chr6.3:81121125-81121144 | MS.gene61331:intron | 35.0% | |
| TTGTTACTGGATGTTGCAAA+CGG | + | chr6.3:81120391-81120410 | None:intergenic | 35.0% | |
| TTTGCTTTGTAATGCACGTT+TGG | - | chr6.3:81118334-81118353 | MS.gene61331:intron | 35.0% | |
| ! | ACTCCATCAATTTGAAGTGT+CGG | - | chr6.3:81118685-81118704 | MS.gene61331:intron | 35.0% |
| ! | AGATATTGAGAGCTCTAATC+GGG | - | chr6.3:81117949-81117968 | MS.gene61331:intron | 35.0% |
| ! | AGCATTTTCTTCGTCTTCAT+AGG | + | chr6.3:81118003-81118022 | None:intergenic | 35.0% |
| ! | AGTGTCTGTATCAAAGTATC+CGG | + | chr6.3:81118560-81118579 | None:intergenic | 35.0% |
| ! | ATTACATGAGGTACCTTCAT+TGG | - | chr6.3:81117764-81117783 | MS.gene61331:intron | 35.0% |
| ! | CTTATCTCATCACTGTCTTT+TGG | + | chr6.3:81119589-81119608 | None:intergenic | 35.0% |
| ! | TTTTATGCCGAATTGTTGGT+GGG | - | chr6.3:81118301-81118320 | MS.gene61331:intron | 35.0% |
| ! | TTTTTATGCCGAATTGTTGG+TGG | - | chr6.3:81118300-81118319 | MS.gene61331:intron | 35.0% |
| !! | AAAGACGTTGATTCCTCTAA+TGG | - | chr6.3:81120511-81120530 | MS.gene61331:intron | 35.0% |
| !! | TCACAAGAAGGTGGATTAAA+TGG | - | chr6.3:81119616-81119635 | MS.gene61331:intron | 35.0% |
| !! | TCTAATTACAGGAAGGTGTT+CGG | + | chr6.3:81117196-81117215 | None:intergenic | 35.0% |
| !!! | CATTTTCGTTGGGTTTTGTT+TGG | - | chr6.3:81120032-81120051 | MS.gene61331:intron | 35.0% |
| AAAACGAACAACACGTTCTC+TGG | + | chr6.3:81119868-81119887 | None:intergenic | 40.0% | |
| AAACCTTCAGATACAGTTGC+TGG | + | chr6.3:81116952-81116971 | None:intergenic | 40.0% | |
| AACAGTTCTGTCACTAATGG+AGG | + | chr6.3:81118142-81118161 | None:intergenic | 40.0% | |
| AACATGGAGAAGATGGTACT+TGG | + | chr6.3:81120278-81120297 | None:intergenic | 40.0% | |
| AATGAGAACAAGTCGACATG+AGG | - | chr6.3:81117216-81117235 | MS.gene61331:intron | 40.0% | |
| AATTGCATTAGGTGCAGCTA+AGG | - | chr6.3:81117564-81117583 | MS.gene61331:intron | 40.0% | |
| ACAGAGATGGATCAAAACAC+AGG | + | chr6.3:81120688-81120707 | None:intergenic | 40.0% | |
| ACCCTTTGTAATAGTCCTCT+TGG | + | chr6.3:81116878-81116897 | None:intergenic | 40.0% | |
| ACGGAAACAACTCTGATAGT+TGG | + | chr6.3:81119832-81119851 | None:intergenic | 40.0% | |
| ACTTTGATCTACCTCACTTG+TGG | - | chr6.3:81120744-81120763 | MS.gene61331:CDS | 40.0% | |
| AGAGATGGATCAAAACACAG+GGG | + | chr6.3:81120686-81120705 | None:intergenic | 40.0% | |
| AGAGTTGAATCACAAGAAGG+TGG | - | chr6.3:81119607-81119626 | MS.gene61331:intron | 40.0% | |
| AGATTCATGCCATCAAACAC+AGG | + | chr6.3:81120138-81120157 | None:intergenic | 40.0% | |
| AGCTTATTGTATGCTTGCCT+TGG | - | chr6.3:81117109-81117128 | MS.gene61331:intron | 40.0% | |
| ATACCGACACAATACTGACA+TGG | + | chr6.3:81118630-81118649 | None:intergenic | 40.0% | |
| ATCTTCTTCTCTGCAAGAGA+GGG | - | chr6.3:81118954-81118973 | MS.gene61331:CDS | 40.0% | |
| ATTCCAGCAACTGTATCTGA+AGG | - | chr6.3:81116946-81116965 | MS.gene61331:intron | 40.0% | |
| CAGAGATGGATCAAAACACA+GGG | + | chr6.3:81120687-81120706 | None:intergenic | 40.0% | |
| GACAACAGCAATTGCTATAG+AGG | - | chr6.3:81117908-81117927 | MS.gene61331:intron | 40.0% | |
| GCAAATAAACACCACAAGTG+AGG | + | chr6.3:81120758-81120777 | None:intergenic | 40.0% | |
| GCTTATTGTATGCTTGCCTT+GGG | - | chr6.3:81117110-81117129 | MS.gene61331:intron | 40.0% | |
| TTATGTAGTTATGGGACGGA+GGG | - | chr6.3:81118022-81118041 | MS.gene61331:intron | 40.0% | |
| TTGTTGGACGCTGAAACAAT+TGG | - | chr6.3:81119119-81119138 | MS.gene61331:intron | 40.0% | |
| TTTGCTACACCTGTGTTTGA+TGG | - | chr6.3:81120126-81120145 | MS.gene61331:intron | 40.0% | |
| ! | CTCTGGAAGAAGGTAACAAA+CGG | + | chr6.3:81119851-81119870 | None:intergenic | 40.0% |
| ! | GTCGGTATTGAAATGAACAC+CGG | - | chr6.3:81118642-81118661 | MS.gene61331:intron | 40.0% |
| ! | TCATCTGAAACACAAACCCA+AGG | + | chr6.3:81117129-81117148 | None:intergenic | 40.0% |
| ! | TGAGTCTGGGATAGTTAAAC+TGG | - | chr6.3:81118451-81118470 | MS.gene61331:intron | 40.0% |
| !! | CATATCAGGTTGAAACCAAG+AGG | - | chr6.3:81116860-81116879 | MS.gene61331:intron | 40.0% |
| !!! | GTTGGGTTTTGTTTGGTCTT+TGG | - | chr6.3:81120039-81120058 | MS.gene61331:intron | 40.0% |
| AAATGAACACCGGCGCATAT+CGG | - | chr6.3:81118652-81118671 | MS.gene61331:intron | 45.0% | |
| AAGGGCAGAGATTGCAACTT+TGG | - | chr6.3:81119738-81119757 | MS.gene61331:intron | 45.0% | |
| AATGCAGCACAAGCAAGTGA+AGG | - | chr6.3:81119553-81119572 | MS.gene61331:intron | 45.0% | |
| AGGGCAGAGATTGCAACTTT+GGG | - | chr6.3:81119739-81119758 | MS.gene61331:intron | 45.0% | |
| ATGCAGCACAAGCAAGTGAA+GGG | - | chr6.3:81119554-81119573 | MS.gene61331:intron | 45.0% | |
| CTGCAAGAGAGGGATTCATT+TGG | - | chr6.3:81118964-81118983 | MS.gene61331:CDS | 45.0% | |
| CTTATGTAGTTATGGGACGG+AGG | - | chr6.3:81118021-81118040 | MS.gene61331:intron | 45.0% | |
| GATCTTCTTCTCTGCAAGAG+AGG | - | chr6.3:81118953-81118972 | MS.gene61331:CDS | 45.0% | |
| GCTCAGCAGTATGAGTTTGA+TGG | - | chr6.3:81119328-81119347 | MS.gene61331:intron | 45.0% | |
| GGGTCTAATATGACATTGCG+TGG | - | chr6.3:81118889-81118908 | MS.gene61331:intron | 45.0% | |
| GGTTAAGTGTGTGAAGACTC+TGG | - | chr6.3:81118105-81118124 | MS.gene61331:intron | 45.0% | |
| GTAATAAACCCGAATCCTCG+AGG | + | chr6.3:81116669-81116688 | None:intergenic | 45.0% | |
| TCAAAACACAGGGGAACATC+TGG | + | chr6.3:81120677-81120696 | None:intergenic | 45.0% | |
| TGTGGATAGATATGCGGTTG+TGG | - | chr6.3:81117728-81117747 | MS.gene61331:intron | 45.0% | |
| TTGGAGCTGAAACACAGAGA+TGG | + | chr6.3:81120701-81120720 | None:intergenic | 45.0% | |
| ! | ACAACACGTTCTCTGGAAGA+AGG | + | chr6.3:81119861-81119880 | None:intergenic | 45.0% |
| ! | GCACCGACACTTCAAATTGA+TGG | + | chr6.3:81118691-81118710 | None:intergenic | 45.0% |
| ! | TTTCAGGCTTTGGCAGATGA+TGG | - | chr6.3:81121208-81121227 | MS.gene61331:intron | 45.0% |
| AATGAACACCGGCGCATATC+GGG | - | chr6.3:81118653-81118672 | MS.gene61331:intron | 50.0% | |
| ACAACGACTTCGCTTGCTTG+AGG | + | chr6.3:81120356-81120375 | None:intergenic | 50.0% | |
| CAAGCGACCCACCAACAATT+CGG | + | chr6.3:81118311-81118330 | None:intergenic | 50.0% | |
| CTGGATGTTGCAAACGGACA+AGG | + | chr6.3:81120385-81120404 | None:intergenic | 50.0% | |
| TAAACCCGAATCCTCGAGGA+CGG | + | chr6.3:81116665-81116684 | None:intergenic | 50.0% | |
| ! | GAATTGTTGGTGGGTCGCTT+GGG | - | chr6.3:81118310-81118329 | MS.gene61331:intron | 50.0% |
| TTTGAGTGCCCGATATGCGC+CGG | + | chr6.3:81118664-81118683 | None:intergenic | 55.0% | |
| ! | AGGTGTTCGGCAGCTTGTTC+TGG | + | chr6.3:81117183-81117202 | None:intergenic | 55.0% |
| ! | CGAATTGTTGGTGGGTCGCT+TGG | - | chr6.3:81118309-81118328 | MS.gene61331:intron | 55.0% |
| ! | GGTGTTCGGCAGCTTGTTCT+GGG | + | chr6.3:81117182-81117201 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 81116659 | 81121267 | 81116659 | ID=MS.gene61331 |
| chr6.3 | mRNA | 81116659 | 81121267 | 81116659 | ID=MS.gene61331.t1;Parent=MS.gene61331 |
| chr6.3 | exon | 81121247 | 81121267 | 81121247 | ID=MS.gene61331.t1.exon1;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81121247 | 81121267 | 81121247 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81120959 | 81121058 | 81120959 | ID=MS.gene61331.t1.exon2;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81120959 | 81121058 | 81120959 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81120720 | 81120781 | 81120720 | ID=MS.gene61331.t1.exon3;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81120720 | 81120781 | 81120720 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81119943 | 81120020 | 81119943 | ID=MS.gene61331.t1.exon4;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81119943 | 81120020 | 81119943 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81119751 | 81119814 | 81119751 | ID=MS.gene61331.t1.exon5;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81119751 | 81119814 | 81119751 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81118941 | 81119036 | 81118941 | ID=MS.gene61331.t1.exon6;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81118941 | 81119036 | 81118941 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81118030 | 81118109 | 81118030 | ID=MS.gene61331.t1.exon7;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81118030 | 81118109 | 81118030 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81117523 | 81117579 | 81117523 | ID=MS.gene61331.t1.exon8;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81117523 | 81117579 | 81117523 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| chr6.3 | exon | 81116659 | 81116712 | 81116659 | ID=MS.gene61331.t1.exon9;Parent=MS.gene61331.t1 |
| chr6.3 | CDS | 81116659 | 81116712 | 81116659 | ID=cds.MS.gene61331.t1;Parent=MS.gene61331.t1 |
| Gene Sequence |
| Protein sequence |
