AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054722

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054722.t1 MTR_5g045560 91.561 237 20 0 1 237 1 237 3.13e-153 425
MS.gene054722.t1 MTR_5g055100 76.793 237 55 0 1 237 1 237 2.36e-134 377
MS.gene054722.t1 MTR_2g085280 76.695 236 55 0 1 236 1 236 4.77e-134 377
MS.gene054722.t1 MTR_2g085250 76.695 236 55 0 1 236 1 236 1.56e-133 375
MS.gene054722.t1 MTR_5g053390 75.983 229 55 0 1 229 1 229 2.71e-123 350
MS.gene054722.t1 MTR_8g043650 67.511 237 77 0 1 237 1 237 9.57e-116 330
MS.gene054722.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 1.37e-112 322
MS.gene054722.t1 MTR_1g077360 68.000 225 72 0 1 225 1 225 2.54e-109 314
MS.gene054722.t1 MTR_1g105920 68.468 222 70 0 1 222 1 222 5.47e-107 308
MS.gene054722.t1 MTR_2g030740 67.932 237 76 0 1 237 1 237 6.63e-106 305
MS.gene054722.t1 MTR_1g105910 64.889 225 79 0 1 225 1 225 6.32e-105 303
MS.gene054722.t1 MTR_1g012570 67.511 237 77 0 1 237 1 237 8.59e-103 298
MS.gene054722.t1 MTR_3g052920 65.315 222 77 0 1 222 1 222 2.24e-100 291
MS.gene054722.t1 MTR_3g030770 62.128 235 71 3 1 225 1 227 1.09e-96 282
MS.gene054722.t1 MTR_1g105905 62.273 220 83 0 18 237 1 220 1.23e-96 281
MS.gene054722.t1 MTR_1g108510 62.128 235 71 3 1 225 1 227 3.97e-96 280
MS.gene054722.t1 MTR_0121s0080 59.494 237 95 1 1 237 1 236 8.73e-95 277
MS.gene054722.t1 MTR_2g093190 61.277 235 73 3 1 225 1 227 2.82e-94 276
MS.gene054722.t1 MTR_1g108580 57.741 239 84 3 1 237 1 224 5.04e-88 260
MS.gene054722.t1 MTR_3g052870 59.817 219 69 1 1 219 1 200 8.45e-88 259
MS.gene054722.t1 MTR_1g106070 66.851 181 60 0 1 181 1 181 1.38e-83 247
MS.gene054722.t1 MTR_7g062350 52.542 236 110 2 3 237 14 248 8.74e-78 234
MS.gene054722.t1 MTR_1g075570 58.989 178 59 1 18 195 1 164 2.36e-61 190
MS.gene054722.t1 MTR_3g080940 47.191 178 94 0 1 178 1 178 1.90e-56 179
MS.gene054722.t1 MTR_0121s0100 67.188 128 42 0 1 128 1 128 2.85e-55 173
MS.gene054722.t1 MTR_3g030780 65.323 124 43 0 1 124 1 124 4.51e-53 167
MS.gene054722.t1 MTR_3g067910 74.510 102 26 0 21 122 2 103 3.73e-49 157
MS.gene054722.t1 MTR_3g067915 59.140 93 38 0 33 125 3 95 8.87e-31 109
MS.gene054722.t1 MTR_3g067875 92.857 56 4 0 18 73 1 56 2.29e-30 107
MS.gene054722.t1 MTR_8g086290 36.196 163 100 1 5 167 8 166 5.35e-30 110
MS.gene054722.t1 MTR_7g028448 40.000 155 81 2 5 159 8 150 2.46e-29 108
MS.gene054722.t1 MTR_4g036915 40.000 155 81 2 5 159 8 150 2.46e-29 108
MS.gene054722.t1 MTR_2g105290 34.545 165 104 1 5 169 8 168 1.37e-28 106
MS.gene054722.t1 MTR_3g067870 75.410 61 15 0 16 76 83 143 1.04e-24 96.3
MS.gene054722.t1 MTR_4g131030 32.584 178 95 3 9 171 2 169 1.30e-24 97.4
MS.gene054722.t1 MTR_1g108500 55.208 96 22 1 22 117 110 184 1.93e-24 99.4
MS.gene054722.t1 MTR_1g063160 34.545 165 92 3 9 171 2 152 2.16e-23 93.2
MS.gene054722.t1 MTR_1g047550 53.247 77 36 0 9 85 2 78 2.91e-23 92.8
MS.gene054722.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 6.38e-23 92.0
MS.gene054722.t1 MTR_8g051580 40.625 128 67 3 9 131 2 125 2.33e-22 90.5
MS.gene054722.t1 MTR_4g127140 32.597 181 108 3 5 175 8 184 4.43e-21 87.4
MS.gene054722.t1 MTR_1g054265 49.367 79 40 0 9 87 2 80 4.78e-21 87.0
MS.gene054722.t1 MTR_8g046350 34.965 143 83 3 9 147 2 138 1.71e-20 85.1
MS.gene054722.t1 MTR_4g094632 40.351 114 65 2 9 121 2 113 5.96e-20 83.6
MS.gene054722.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 1.13e-18 82.0
MS.gene054722.t1 MTR_4g094638 55.072 69 31 0 9 77 2 70 2.42e-18 80.1
MS.gene054722.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 6.12e-18 79.3
MS.gene054722.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 6.40e-18 80.1
MS.gene054722.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 8.35e-18 79.7
MS.gene054722.t1 MTR_8g033270 51.899 79 36 1 9 85 2 80 1.47e-17 79.3
MS.gene054722.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.64e-17 79.0
MS.gene054722.t1 MTR_1g053070 40.000 120 47 2 9 103 2 121 2.19e-17 79.0
MS.gene054722.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 4.59e-17 77.8
MS.gene054722.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 6.95e-17 77.4
MS.gene054722.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 1.47e-16 76.6
MS.gene054722.t1 MTR_0003s0590 54.412 68 31 0 9 76 2 69 1.52e-16 76.6
MS.gene054722.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 1.59e-16 75.9
MS.gene054722.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 2.67e-16 75.9
MS.gene054722.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 3.41e-16 74.3
MS.gene054722.t1 MTR_2g009890 46.053 76 41 0 9 84 2 77 3.93e-16 75.9
MS.gene054722.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 4.40e-16 75.1
MS.gene054722.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 5.10e-16 74.7
MS.gene054722.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 5.14e-16 74.7
MS.gene054722.t1 MTR_8g022970 33.750 160 85 5 10 159 19 167 5.39e-16 73.9
MS.gene054722.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 5.40e-16 74.7
MS.gene054722.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.63e-16 74.7
MS.gene054722.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.95e-16 74.7
MS.gene054722.t1 MTR_4g084740 46.067 89 46 2 9 95 2 90 7.53e-16 75.9
MS.gene054722.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 8.97e-16 74.3
MS.gene054722.t1 MTR_7g016600 52.174 69 32 1 9 76 2 70 1.19e-15 74.3
MS.gene054722.t1 MTR_3g102570 51.429 70 33 1 9 77 2 71 1.83e-15 74.7
MS.gene054722.t1 MTR_1g029670 37.398 123 52 3 9 131 2 99 2.61e-15 72.0
MS.gene054722.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 2.88e-15 72.4
MS.gene054722.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.89e-15 72.8
MS.gene054722.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.96e-15 72.8
MS.gene054722.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 3.88e-15 72.4
MS.gene054722.t1 MTR_3g088615 47.143 70 35 1 9 76 2 71 3.97e-15 71.2
MS.gene054722.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.71e-15 72.8
MS.gene054722.t1 MTR_1g038300 33.974 156 69 5 9 130 2 157 5.12e-15 72.0
MS.gene054722.t1 MTR_3g109930 33.566 143 73 5 27 159 20 150 5.38e-15 70.9
MS.gene054722.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 5.69e-15 67.8
MS.gene054722.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 6.51e-15 68.9
MS.gene054722.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 6.62e-15 71.2
MS.gene054722.t1 MTR_4g051538 34.868 152 78 5 1 147 1 136 1.08e-14 71.2
MS.gene054722.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 2.74e-14 65.9
MS.gene054722.t1 MTR_7g075850 45.122 82 42 2 9 87 2 83 5.16e-14 69.7
MS.gene054722.t1 MTR_3g113030 49.206 63 32 0 9 71 2 64 5.90e-14 69.3
MS.gene054722.t1 MTR_8g097090 49.275 69 34 1 9 76 2 70 8.00e-14 68.9
MS.gene054722.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 8.93e-14 68.9
MS.gene054722.t1 MTR_3g437790 30.986 142 83 4 26 159 30 164 1.03e-13 67.8
MS.gene054722.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 1.37e-13 68.6
MS.gene054722.t1 MTR_4g093030 49.180 61 31 0 9 69 2 62 9.72e-13 64.3
MS.gene054722.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.10e-11 61.2
MS.gene054722.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.12e-11 61.2
MS.gene054722.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.12e-11 61.2
MS.gene054722.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.21e-11 61.6
MS.gene054722.t1 MTR_4g108720 41.558 77 42 2 9 83 2 77 2.41e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054722.t1 AT5G60440 47.959 196 92 4 5 190 3 198 3.93e-52 171
MS.gene054722.t1 AT1G01530 42.268 194 102 3 4 189 2 193 1.54e-41 142
MS.gene054722.t1 AT1G65360 39.149 235 122 5 5 230 3 225 2.30e-40 138
MS.gene054722.t1 AT2G24840 48.125 160 74 4 9 163 63 218 3.38e-40 139
MS.gene054722.t1 AT4G36590 43.293 164 83 3 5 160 3 164 1.02e-33 122
MS.gene054722.t1 AT3G04100 33.333 162 104 2 2 159 7 168 3.36e-27 103
MS.gene054722.t1 AT1G72350 57.534 73 29 1 9 81 43 113 6.78e-22 90.5
MS.gene054722.t1 AT2G34440 32.432 148 98 2 9 156 2 147 1.54e-21 88.2
MS.gene054722.t1 AT1G28460 35.714 140 87 1 5 141 4 143 1.66e-21 88.6
MS.gene054722.t1 AT3G66656 37.815 119 70 1 9 123 2 120 5.24e-21 87.0
MS.gene054722.t1 AT2G45650 57.353 68 29 0 9 76 2 69 3.16e-19 84.0
MS.gene054722.t1 AT2G45660 55.882 68 30 0 10 77 3 70 6.21e-19 80.9
MS.gene054722.t1 AT5G51870 38.583 127 58 3 5 123 21 135 8.05e-19 81.6
MS.gene054722.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.69e-18 81.3
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 2 69 2.82e-18 80.9
MS.gene054722.t1 AT4G22950 49.315 73 37 0 10 82 3 75 2.91e-18 79.7
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 2 69 3.52e-18 80.9
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 3 70 3.58e-18 80.9
MS.gene054722.t1 AT1G29962 31.902 163 102 4 5 161 4 163 4.19e-18 79.3
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 12 79 4.26e-18 80.9
MS.gene054722.t1 AT5G51870 38.525 122 55 3 10 123 3 112 4.60e-18 79.0
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 28 95 6.80e-18 80.5
MS.gene054722.t1 AT5G51870 56.716 67 29 0 10 76 3 69 7.86e-18 79.3
MS.gene054722.t1 AT5G51870 55.714 70 31 0 7 76 10 79 9.95e-18 79.3
MS.gene054722.t1 AT4G22950 50.704 71 35 0 10 80 3 73 1.07e-17 79.3
MS.gene054722.t1 AT4G22950 50.704 71 35 0 10 80 3 73 1.07e-17 79.3
MS.gene054722.t1 AT1G28450 32.867 143 90 3 5 141 4 146 1.30e-17 78.2
MS.gene054722.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.31e-17 77.0
MS.gene054722.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.55e-17 79.0
MS.gene054722.t1 AT4G09960 51.471 68 33 0 9 76 97 164 1.62e-17 80.5
MS.gene054722.t1 AT3G57390 54.412 68 31 0 9 76 2 69 2.85e-17 78.2
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.71e-17 74.7
MS.gene054722.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.11e-17 77.4
MS.gene054722.t1 AT4G18960 49.333 75 38 0 2 76 11 85 4.33e-17 78.2
MS.gene054722.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.59e-17 76.6
MS.gene054722.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.65e-17 76.3
MS.gene054722.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.79e-17 77.8
MS.gene054722.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.79e-17 77.8
MS.gene054722.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.83e-17 77.8
MS.gene054722.t1 AT3G57230 50.000 68 34 0 9 76 2 69 5.53e-17 77.8
MS.gene054722.t1 AT3G57230 50.000 68 34 0 9 76 2 69 5.53e-17 77.8
MS.gene054722.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.82e-17 77.8
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.88e-17 75.9
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.88e-17 75.9
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.88e-17 75.9
MS.gene054722.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.19e-17 77.8
MS.gene054722.t1 AT3G57390 54.412 68 31 0 9 76 2 69 6.22e-17 77.8
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.96e-17 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.96e-17 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.96e-17 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.96e-17 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.96e-17 75.5
MS.gene054722.t1 AT5G10140 50.725 69 33 1 9 76 2 70 7.79e-17 75.9
MS.gene054722.t1 AT3G58780 50.704 71 35 0 6 76 14 84 8.30e-17 77.4
MS.gene054722.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.38e-17 76.3
MS.gene054722.t1 AT3G58780 50.704 71 35 0 6 76 20 90 9.07e-17 77.4
MS.gene054722.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.03e-16 75.9
MS.gene054722.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.12e-16 77.4
MS.gene054722.t1 AT4G24540 52.941 68 32 0 9 76 2 69 1.13e-16 76.6
MS.gene054722.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.20e-16 77.4
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.72e-16 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.72e-16 75.5
MS.gene054722.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.95e-16 77.0
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.12e-16 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.12e-16 75.5
MS.gene054722.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.12e-16 75.5
MS.gene054722.t1 AT5G51860 35.443 158 94 2 10 163 3 156 2.50e-16 75.1
MS.gene054722.t1 AT3G54340 50.000 70 33 1 9 76 2 71 3.04e-16 75.5
MS.gene054722.t1 AT5G51860 35.443 158 94 2 10 163 3 156 3.35e-16 75.1
MS.gene054722.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.82e-16 75.5
MS.gene054722.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.82e-16 75.5
MS.gene054722.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.82e-16 75.5
MS.gene054722.t1 AT1G77950 35.000 120 76 2 9 127 2 120 3.82e-16 75.5
MS.gene054722.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.97e-16 75.1
MS.gene054722.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.97e-16 75.1
MS.gene054722.t1 AT1G77980 50.704 71 34 1 9 78 2 72 4.19e-16 76.6
MS.gene054722.t1 AT3G61120 52.941 68 32 0 9 76 2 69 4.39e-16 75.5
MS.gene054722.t1 AT3G30260 47.826 69 35 1 9 76 2 70 6.19e-16 75.1
MS.gene054722.t1 AT1G22130 49.367 79 38 2 9 86 2 79 7.20e-16 75.9
MS.gene054722.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.29e-15 72.8
MS.gene054722.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.29e-15 72.8
MS.gene054722.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.45e-15 74.3
MS.gene054722.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.53e-15 74.3
MS.gene054722.t1 AT2G14210 49.275 69 34 1 9 76 2 70 1.67e-15 73.6
MS.gene054722.t1 AT5G60910 49.275 69 34 1 9 76 2 70 1.83e-15 73.6
MS.gene054722.t1 AT1G26310 49.275 69 34 1 9 76 2 70 1.92e-15 73.6
MS.gene054722.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.11e-15 73.2
MS.gene054722.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.11e-15 73.2
MS.gene054722.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.33e-15 73.2
MS.gene054722.t1 AT5G15800 52.174 69 32 1 9 76 2 70 2.66e-15 73.2
MS.gene054722.t1 AT1G17310 54.054 74 32 1 8 81 47 118 4.08e-15 72.0
MS.gene054722.t1 AT5G15800 52.174 69 32 1 9 76 2 70 4.22e-15 72.8
MS.gene054722.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.08e-15 72.4
MS.gene054722.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.13e-15 72.4
MS.gene054722.t1 AT1G17310 54.054 74 32 1 8 81 58 129 5.81e-15 72.0
MS.gene054722.t1 AT5G20240 48.571 70 34 1 9 76 2 71 5.87e-15 70.1
MS.gene054722.t1 AT1G69120 46.377 69 36 1 9 76 2 70 7.03e-15 72.0
MS.gene054722.t1 AT5G65050 46.377 69 36 1 9 76 2 70 7.57e-15 70.5
MS.gene054722.t1 AT5G20240 48.571 70 34 1 9 76 2 71 8.77e-15 71.2
MS.gene054722.t1 AT2G22540 51.471 68 28 1 9 76 2 64 1.19e-14 71.2
MS.gene054722.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.32e-14 71.2
MS.gene054722.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.55e-14 70.1
MS.gene054722.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.58e-14 70.1
MS.gene054722.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.66e-14 69.7
MS.gene054722.t1 AT1G47760 33.043 115 67 2 9 115 2 114 3.02e-14 68.9
MS.gene054722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.36e-14 68.9
MS.gene054722.t1 AT3G58780 52.459 61 29 0 6 66 14 74 4.50e-14 69.7
MS.gene054722.t1 AT3G02310 47.826 69 35 1 9 76 2 70 5.17e-14 68.9
MS.gene054722.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.33e-14 68.6
MS.gene054722.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.71e-14 68.6
MS.gene054722.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.80e-14 68.6
MS.gene054722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 6.97e-14 69.3
MS.gene054722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 7.03e-14 69.3
MS.gene054722.t1 AT1G71692 45.714 70 37 1 9 77 2 71 7.13e-14 68.6
MS.gene054722.t1 AT5G65070 44.928 69 37 1 9 76 2 70 7.15e-14 67.4
MS.gene054722.t1 AT3G58780 52.459 61 29 0 6 66 14 74 7.21e-14 69.7
MS.gene054722.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.22e-14 69.3
MS.gene054722.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.51e-14 68.9
MS.gene054722.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.83e-14 68.9
MS.gene054722.t1 AT1G18750 31.163 215 110 13 9 195 2 206 9.50e-14 70.1
MS.gene054722.t1 AT1G18750 31.163 215 110 13 9 195 2 206 9.87e-14 70.1
MS.gene054722.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.13e-13 68.9
MS.gene054722.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.31e-13 67.8
MS.gene054722.t1 AT5G65070 44.928 69 37 1 9 76 2 70 2.66e-13 67.4
MS.gene054722.t1 AT5G65070 44.928 69 37 1 9 76 2 70 3.25e-13 67.0
MS.gene054722.t1 AT5G65070 50.877 57 28 0 9 65 2 58 1.20e-12 65.5
MS.gene054722.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.42e-12 66.6
MS.gene054722.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.42e-12 66.6
MS.gene054722.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.42e-12 66.6
MS.gene054722.t1 AT2G03060 30.460 174 95 8 9 164 2 167 1.45e-12 66.6
MS.gene054722.t1 AT1G18750 30.409 171 98 7 9 177 2 153 2.03e-12 66.2
MS.gene054722.t1 AT4G37435 43.056 72 40 1 9 79 2 73 4.88e-12 63.2
MS.gene054722.t1 AT5G65080 40.260 77 45 1 1 76 1 77 4.98e-12 63.2
MS.gene054722.t1 AT1G46408 34.127 126 68 4 10 127 5 123 1.32e-11 63.2
MS.gene054722.t1 AT5G65080 45.161 62 34 0 1 62 1 62 1.37e-11 62.4
MS.gene054722.t1 AT5G49420 38.462 91 50 3 5 89 3 93 2.99e-11 62.8
MS.gene054722.t1 AT1G48150 33.108 148 78 7 5 131 12 159 5.57e-11 61.6

Find 60 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGATAACATTGAAATTC+AGG 0.196230 5.3:+32987825 MS.gene054722:CDS
CTTATTTGGCTTCAACAATA+TGG 0.200420 5.3:+32987984 MS.gene054722:CDS
ATGTTTCAACCTCACTTATT+TGG 0.211284 5.3:+32987970 MS.gene054722:CDS
CCTCATTATTCTTTCGTTGT+TGG 0.274543 5.3:-32987702 None:intergenic
ATCGCGTGATCTCGTCGTTT+TGG 0.284953 5.3:-32987576 None:intergenic
CTTCCATTTCTTGTTGGAAA+TGG 0.300871 5.3:+32987865 MS.gene054722:CDS
TCTATGACCGTTTCAACATT+TGG 0.310111 5.3:-32987529 None:intergenic
TCCCTTTGATAGGATGAATA+TGG 0.327781 5.3:+32987744 MS.gene054722:CDS
GGTGGACTTGTCCCTTTGAT+AGG 0.330711 5.3:+32987734 MS.gene054722:CDS
CAATCCCTTCCATTTCTTGT+TGG 0.363802 5.3:+32987859 MS.gene054722:CDS
CTATGACCGTTTCAACATTT+GGG 0.363837 5.3:-32987528 None:intergenic
TGGATCATTCAAGAAGGCTT+TGG 0.378658 5.3:+32987774 MS.gene054722:CDS
GAACCATTTCCAACAAGAAA+TGG 0.378706 5.3:-32987868 None:intergenic
TTATTTGGCTTCAACAATAT+GGG 0.380387 5.3:+32987985 MS.gene054722:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 5.3:+32987448 MS.gene054722:CDS
CAACAAGAAATGGAAGGGAT+TGG 0.423570 5.3:-32987858 None:intergenic
ATGCTCAAACTGCATGTTTG+AGG 0.448301 5.3:-32987893 None:intergenic
ATAAGTGAGGTTGAAACATT+GGG 0.452897 5.3:-32987966 None:intergenic
GCTTCGAGAAAGTTACTTGA+AGG 0.468268 5.3:-32987399 None:intergenic
AACAAGAAATGGAAGGGATT+GGG 0.469832 5.3:-32987857 None:intergenic
GCTGATAACATTGAAATTCA+GGG 0.483862 5.3:+32987826 MS.gene054722:CDS
CATAGACCGTTATCTCTCTC+AGG 0.484381 5.3:+32987546 MS.gene054722:CDS
GAAGGTGGGCATGGTCCCCA+TGG 0.487450 5.3:+32988012 MS.gene054722:CDS
AATAAGTGAGGTTGAAACAT+TGG 0.488497 5.3:-32987967 None:intergenic
ATCATTCAAGAAGGCTTTGG+AGG 0.495610 5.3:+32987777 MS.gene054722:CDS
AACAATATGGGAGGAGAAGG+TGG 0.496190 5.3:+32987997 MS.gene054722:CDS
GTTGGCTCAGCTCATTTGCA+TGG 0.505188 5.3:-32987684 None:intergenic
GACCATATTCATCCTATCAA+AGG 0.516254 5.3:-32987746 None:intergenic
AGCAACATATGCACCACAAA+GGG 0.521852 5.3:-32987461 None:intergenic
AAGGTGGGCATGGTCCCCAT+GGG 0.524166 5.3:+32988013 MS.gene054722:CDS
TGGTCACCCAAATGTTGAAA+CGG 0.524927 5.3:+32987522 MS.gene054722:CDS
TACATTGACTCGTATGAAAG+AGG 0.527218 5.3:+32987642 MS.gene054722:CDS
CCTTCTTGAATGATCCAAGT+TGG 0.533724 5.3:-32987768 None:intergenic
ACCATATTCATCCTATCAAA+GGG 0.536947 5.3:-32987745 None:intergenic
ATGGGAGGAGAAGGTGGGCA+TGG 0.547684 5.3:+32988003 MS.gene054722:CDS
TTCAACAATATGGGAGGAGA+AGG 0.556945 5.3:+32987994 MS.gene054722:CDS
AGGATGAATATGGTCCAACT+TGG 0.567940 5.3:+32987754 MS.gene054722:CDS
CCAACTTGGATCATTCAAGA+AGG 0.570743 5.3:+32987768 MS.gene054722:CDS
GCTCGGATCAAAAGAACCCA+TGG 0.573893 5.3:-32988029 None:intergenic
GTGGCACCTGAGAGAGATAA+CGG 0.575928 5.3:-32987552 None:intergenic
ATTTCCAACAAGAAATGGAA+GGG 0.580414 5.3:-32987863 None:intergenic
ATCATTAAGCTCACGCACAC+TGG 0.588533 5.3:-32987620 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.591444 5.3:+32987410 MS.gene054722:CDS
AATGAAAAGACCTTCTCACT+AGG 0.596511 5.3:-32987499 None:intergenic
CTTTCTTGAATAGCCCACTA+CGG 0.597990 5.3:-32987423 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.601112 5.3:+32987409 MS.gene054722:CDS
TTTGGCTTCAACAATATGGG+AGG 0.603260 5.3:+32987988 MS.gene054722:CDS
AGAAAGATCGAATCTTGTTG+AGG 0.605809 5.3:-32987925 None:intergenic
ACAATATGGGAGGAGAAGGT+GGG 0.607591 5.3:+32987998 MS.gene054722:CDS
TATATTCTCACCTAGTGAGA+AGG 0.609022 5.3:+32987489 MS.gene054722:CDS
CTCGGATCAAAAGAACCCAT+GGG 0.613719 5.3:-32988028 None:intergenic
CATTTCCAACAAGAAATGGA+AGG 0.615915 5.3:-32987864 None:intergenic
TCGAGCGGAAAGAAAACTCA+AGG 0.622335 5.3:+32987334 MS.gene054722:CDS
GCTCACGCACACTGGCATGA+CGG 0.625752 5.3:-32987612 None:intergenic
CCAACAACGAAAGAATAATG+AGG 0.626750 5.3:+32987702 MS.gene054722:CDS
GAGCAACATATGCACCACAA+AGG 0.640810 5.3:-32987462 None:intergenic
TGTGCTTCAACCATGTCGAG+CGG 0.661849 5.3:+32987319 None:intergenic
TTGTTGAAGCCAAATAAGTG+AGG 0.672964 5.3:-32987979 None:intergenic
CGAGATCACGCGATTCATCG+AGG 0.745713 5.3:+32987585 MS.gene054722:CDS
TCGGATCAAAAGAACCCATG+GGG 0.747336 5.3:-32988027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTGGCTTCAACAATAT+GGG + chr5.3:32987985-32988004 MS.gene054722:CDS 25.0%
!!! TCTTTCTAGCACAATTTTTA+CGG + chr5.3:32987941-32987960 MS.gene054722:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr5.3:32987363-32987382 None:intergenic 25.0%
AATAAGTGAGGTTGAAACAT+TGG - chr5.3:32987970-32987989 None:intergenic 30.0%
ACCATATTCATCCTATCAAA+GGG - chr5.3:32987748-32987767 None:intergenic 30.0%
ATAAGTGAGGTTGAAACATT+GGG - chr5.3:32987969-32987988 None:intergenic 30.0%
ATGTTTCAACCTCACTTATT+TGG + chr5.3:32987970-32987989 MS.gene054722:CDS 30.0%
ATTTCCAACAAGAAATGGAA+GGG - chr5.3:32987866-32987885 None:intergenic 30.0%
GCTGATAACATTGAAATTCA+GGG + chr5.3:32987826-32987845 MS.gene054722:CDS 30.0%
TGCTGATAACATTGAAATTC+AGG + chr5.3:32987825-32987844 MS.gene054722:CDS 30.0%
! AGAATAATGAGGCTCATTTT+TGG + chr5.3:32987713-32987732 MS.gene054722:CDS 30.0%
! CTTATTTGGCTTCAACAATA+TGG + chr5.3:32987984-32988003 MS.gene054722:CDS 30.0%
AACAAGAAATGGAAGGGATT+GGG - chr5.3:32987860-32987879 None:intergenic 35.0%
AATGAAAAGACCTTCTCACT+AGG - chr5.3:32987502-32987521 None:intergenic 35.0%
AGAAAGATCGAATCTTGTTG+AGG - chr5.3:32987928-32987947 None:intergenic 35.0%
CATTTCCAACAAGAAATGGA+AGG - chr5.3:32987867-32987886 None:intergenic 35.0%
CCAACAACGAAAGAATAATG+AGG + chr5.3:32987702-32987721 MS.gene054722:CDS 35.0%
CCTCATTATTCTTTCGTTGT+TGG - chr5.3:32987705-32987724 None:intergenic 35.0%
CTATGACCGTTTCAACATTT+GGG - chr5.3:32987531-32987550 None:intergenic 35.0%
CTTCCATTTCTTGTTGGAAA+TGG + chr5.3:32987865-32987884 MS.gene054722:CDS 35.0%
GAACCATTTCCAACAAGAAA+TGG - chr5.3:32987871-32987890 None:intergenic 35.0%
GACCATATTCATCCTATCAA+AGG - chr5.3:32987749-32987768 None:intergenic 35.0%
TATATTCTCACCTAGTGAGA+AGG + chr5.3:32987489-32987508 MS.gene054722:CDS 35.0%
TCCCTTTGATAGGATGAATA+TGG + chr5.3:32987744-32987763 MS.gene054722:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG - chr5.3:32987532-32987551 None:intergenic 35.0%
TTGTTGAAGCCAAATAAGTG+AGG - chr5.3:32987982-32988001 None:intergenic 35.0%
! AGTGAGAAGGTCTTTTCATT+TGG + chr5.3:32987502-32987521 MS.gene054722:CDS 35.0%
!! ATAATGAGGCTCATTTTTGG+TGG + chr5.3:32987716-32987735 MS.gene054722:CDS 35.0%
!! TACATTGACTCGTATGAAAG+AGG + chr5.3:32987642-32987661 MS.gene054722:CDS 35.0%
AGCAACATATGCACCACAAA+GGG - chr5.3:32987464-32987483 None:intergenic 40.0%
AGGATGAATATGGTCCAACT+TGG + chr5.3:32987754-32987773 MS.gene054722:CDS 40.0%
ATGCTCAAACTGCATGTTTG+AGG - chr5.3:32987896-32987915 None:intergenic 40.0%
CAACAAGAAATGGAAGGGAT+TGG - chr5.3:32987861-32987880 None:intergenic 40.0%
CAATCCCTTCCATTTCTTGT+TGG + chr5.3:32987859-32987878 MS.gene054722:CDS 40.0%
CCAACTTGGATCATTCAAGA+AGG + chr5.3:32987768-32987787 MS.gene054722:CDS 40.0%
CCTTCTTGAATGATCCAAGT+TGG - chr5.3:32987771-32987790 None:intergenic 40.0%
CTTTCTTGAATAGCCCACTA+CGG - chr5.3:32987426-32987445 None:intergenic 40.0%
GCTTCGAGAAAGTTACTTGA+AGG - chr5.3:32987402-32987421 None:intergenic 40.0%
TGGATCATTCAAGAAGGCTT+TGG + chr5.3:32987774-32987793 MS.gene054722:CDS 40.0%
TGGTCACCCAAATGTTGAAA+CGG + chr5.3:32987522-32987541 MS.gene054722:CDS 40.0%
TTCAACAATATGGGAGGAGA+AGG + chr5.3:32987994-32988013 MS.gene054722:CDS 40.0%
! ATCATTCAAGAAGGCTTTGG+AGG + chr5.3:32987777-32987796 MS.gene054722:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.3:32987988-32988007 MS.gene054722:CDS 40.0%
AACAATATGGGAGGAGAAGG+TGG + chr5.3:32987997-32988016 MS.gene054722:CDS 45.0%
ACAATATGGGAGGAGAAGGT+GGG + chr5.3:32987998-32988017 MS.gene054722:CDS 45.0%
ATCATTAAGCTCACGCACAC+TGG - chr5.3:32987623-32987642 None:intergenic 45.0%
CATAGACCGTTATCTCTCTC+AGG + chr5.3:32987546-32987565 MS.gene054722:CDS 45.0%
GAGCAACATATGCACCACAA+AGG - chr5.3:32987465-32987484 None:intergenic 45.0%
TCGAGCGGAAAGAAAACTCA+AGG + chr5.3:32987334-32987353 MS.gene054722:CDS 45.0%
GTGGCACCTGAGAGAGATAA+CGG - chr5.3:32987555-32987574 None:intergenic 50.0%
! ATCGCGTGATCTCGTCGTTT+TGG - chr5.3:32987579-32987598 None:intergenic 50.0%
! GGTGGACTTGTCCCTTTGAT+AGG + chr5.3:32987734-32987753 MS.gene054722:CDS 50.0%
! GTTGGCTCAGCTCATTTGCA+TGG - chr5.3:32987687-32987706 None:intergenic 50.0%
!! TCGCGTGATCTCGTCGTTTT+GGG - chr5.3:32987578-32987597 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr5.3:32987448-32987467 MS.gene054722:CDS 55.0%
CGAGATCACGCGATTCATCG+AGG + chr5.3:32987585-32987604 MS.gene054722:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.3:32987409-32987428 MS.gene054722:CDS 55.0%
!! CGCGTGATCTCGTCGTTTTG+GGG - chr5.3:32987577-32987596 None:intergenic 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.3:32987410-32987429 MS.gene054722:CDS 55.0%
!!! GTGATCTCGTCGTTTTGGGG+TGG - chr5.3:32987574-32987593 None:intergenic 55.0%
AAGGTGGGCATGGTCCCCAT+GGG + chr5.3:32988013-32988032 MS.gene054722:CDS 60.0%
ATGGGAGGAGAAGGTGGGCA+TGG + chr5.3:32988003-32988022 MS.gene054722:CDS 60.0%
GCTCACGCACACTGGCATGA+CGG - chr5.3:32987615-32987634 None:intergenic 60.0%
GAAGGTGGGCATGGTCCCCA+TGG + chr5.3:32988012-32988031 MS.gene054722:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 32987331 32988044 32987331 ID=MS.gene054722
chr5.3 mRNA 32987331 32988044 32987331 ID=MS.gene054722.t1;Parent=MS.gene054722
chr5.3 exon 32987331 32988044 32987331 ID=MS.gene054722.t1.exon1;Parent=MS.gene054722.t1
chr5.3 CDS 32987331 32988044 32987331 ID=cds.MS.gene054722.t1;Parent=MS.gene054722.t1
Gene Sequence

>MS.gene054722

ATGTCGAGCGGAAAGAAAACTCAAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACCTTCAAGTAACTTTCTCGAAGCGCCGTAGTGGGCTATTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTAATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATGTTGAAACGGTCATAGACCGTTATCTCTCTCAGGTGCCACCCCAAAACGACGAGATCACGCGATTCATCGAGGCTTACCGTCATGCCAGTGTGCGTGAGCTTAATGATACATTGACTCGTATGAAAGAGGCACTAGACATTGACAAGAACCATGCAAATGAGCTGAGCCAACAACGAAAGAATAATGAGGCTCATTTTTGGTGGACTTGTCCCTTTGATAGGATGAATATGGTCCAACTTGGATCATTCAAGAAGGCTTTGGAGGATCTTCAAAAACTCGTTGCACATTATGCTGATAACATTGAAATTCAGGGTACTTCTACCCAATCCCTTCCATTTCTTGTTGGAAATGGTTCATCCTCAAACATGCAGTTTGAGCATCAGCAAAATCCTCAACAAGATTCGATCTTTCTAGCACAATTTTTACGGAACCCAATGTTTCAACCTCACTTATTTGGCTTCAACAATATGGGAGGAGAAGGTGGGCATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene054722.t1

MSSGKKTQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVETVIDRYLSQVPPQNDEITRFIEAYRHASVRELNDTLTRMKEALDIDKNHANELSQQRKNNEAHFWWTCPFDRMNMVQLGSFKKALEDLQKLVAHYADNIEIQGTSTQSLPFLVGNGSSSNMQFEHQQNPQQDSIFLAQFLRNPMFQPHLFGFNNMGGEGGHGPHGFF