Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054815.t1 | XP_003624005.2 | 98.3 | 1125 | 17 | 1 | 1 | 1125 | 1 | 1123 | 0.00E+00 | 2220.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054815.t1 | Q69ZJ7 | 24.6 | 1165 | 691 | 31 | 1 | 1032 | 1 | 1111 | 1.8e-74 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054815.t1 | Q2HUD0 | 98.3 | 1125 | 17 | 1 | 1 | 1125 | 1 | 1123 | 0.0e+00 | 2220.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054815 | MS.gene058639 | PPI |
| MS.gene054815 | MS.gene023925 | PPI |
| MS.gene054815 | MS.gene058638 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054815.t1 | MTR_7g078170 | 98.311 | 1125 | 17 | 1 | 1 | 1125 | 1 | 1123 | 0.0 | 2278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054815.t1 | AT3G61480 | 74.091 | 1127 | 277 | 7 | 1 | 1123 | 1 | 1116 | 0.0 | 1687 |
| MS.gene054815.t1 | AT5G28350 | 74.002 | 1127 | 282 | 6 | 1 | 1123 | 1 | 1120 | 0.0 | 1680 |
| MS.gene054815.t1 | AT5G28350 | 71.606 | 1127 | 269 | 7 | 1 | 1123 | 1 | 1080 | 0.0 | 1603 |
| MS.gene054815.t1 | AT3G61480 | 71.644 | 1125 | 264 | 8 | 3 | 1123 | 1 | 1074 | 0.0 | 1603 |
| MS.gene054815.t1 | AT5G28442 | 72.973 | 74 | 19 | 1 | 1 | 74 | 1 | 73 | 2.30e-28 | 109 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACCGTTTGGTCTGTTTC+TGG | 0.110781 | 7.2:-27459877 | MS.gene054815:CDS |
| ATGCTTGATTTCAGAATTTC+TGG | 0.112517 | 7.2:+27460667 | None:intergenic |
| ATATTCCATGTGAAATTATT+TGG | 0.167941 | 7.2:-27458805 | MS.gene054815:CDS |
| ACAAAATTGAGGAAGCTTTA+AGG | 0.179661 | 7.2:-27457145 | MS.gene054815:CDS |
| TGTCTTAGCAGAGGTGTTTC+TGG | 0.200011 | 7.2:-27459655 | MS.gene054815:CDS |
| ATCTTCCTGCTTAAAAGAAT+TGG | 0.228100 | 7.2:+27457957 | None:intergenic |
| CCTTAGCCCTTTCTTACTAA+TGG | 0.233971 | 7.2:+27460577 | None:intergenic |
| AGAATTATTTCATTCTCTTT+TGG | 0.236149 | 7.2:-27459685 | MS.gene054815:CDS |
| CATATTGAACAGGCCAGTTT+TGG | 0.236778 | 7.2:+27459437 | None:intergenic |
| TTCAGGAAATCCTGATTTAC+AGG | 0.237546 | 7.2:-27458770 | MS.gene054815:intron |
| AAGCTTGTTGCATTTGTAAA+AGG | 0.239768 | 7.2:-27454874 | MS.gene054815:CDS |
| TACACCCGACAAGTGATTTA+TGG | 0.245935 | 7.2:-27459625 | MS.gene054815:CDS |
| TTAGCGGTTGCTGGTCTTCA+TGG | 0.264396 | 7.2:-27459388 | MS.gene054815:CDS |
| TTCCATACCTTTCGCGTTGC+AGG | 0.266414 | 7.2:+27454731 | None:intergenic |
| CATTGAATATCAAGATTTAT+TGG | 0.268790 | 7.2:-27453324 | MS.gene054815:CDS |
| ATAATTTCACATGGAATATA+TGG | 0.276187 | 7.2:+27458809 | None:intergenic |
| ACCTGGTTCTTGTTTACATT+TGG | 0.288185 | 7.2:+27456373 | None:intergenic |
| CTGTGCTTTACGGTTATTAC+AGG | 0.289961 | 7.2:-27455449 | MS.gene054815:intron |
| TTTGGTGAATTAACTCCTTC+AGG | 0.295523 | 7.2:-27458787 | MS.gene054815:CDS |
| GTCCATGCAATGCAACTAAC+AGG | 0.298367 | 7.2:+27459943 | None:intergenic |
| GAAAGCAAGCATTGGATAAA+AGG | 0.302012 | 7.2:-27455076 | MS.gene054815:intron |
| GGAGCTTTCGCTTCTTGATT+TGG | 0.304588 | 7.2:-27458270 | MS.gene054815:CDS |
| TTTCTTATATTTCCCAAAAC+TGG | 0.311961 | 7.2:-27459450 | MS.gene054815:CDS |
| GGAACCTTTGGGAGGCCTTT+AGG | 0.315178 | 7.2:+27460710 | None:intergenic |
| ATGTCAACAATCCGTCAAAT+AGG | 0.316567 | 7.2:-27459844 | MS.gene054815:CDS |
| ATGAAAAGATGGAGAGTCTT+TGG | 0.325656 | 7.2:-27459343 | MS.gene054815:CDS |
| GATTCTTTATATGAGCTTGC+TGG | 0.326584 | 7.2:-27455320 | MS.gene054815:CDS |
| AGGCACTCAGTTTGATTTAG+TGG | 0.326832 | 7.2:-27454854 | MS.gene054815:intron |
| CAGATGAAAGTTTATCTTCC+AGG | 0.329468 | 7.2:+27453297 | None:intergenic |
| GAAGTTTCATGGTTAGATTA+TGG | 0.329873 | 7.2:-27458158 | MS.gene054815:CDS |
| TATGTGCTCGGTCAAATTTA+AGG | 0.333827 | 7.2:-27454094 | MS.gene054815:CDS |
| CAACTCCACTATTCCTCTTC+TGG | 0.336976 | 7.2:+27460460 | None:intergenic |
| TGATCTCCTACACAGTTCTA+TGG | 0.341833 | 7.2:-27460818 | MS.gene054815:intron |
| CACAGTTTCTTTGTATGACT+GGG | 0.346199 | 7.2:-27460405 | MS.gene054815:CDS |
| CATGGGAATTCTACACTTGA+TGG | 0.347836 | 7.2:+27457503 | None:intergenic |
| TGATTGGGCGTAGGAACCTT+TGG | 0.351000 | 7.2:+27460698 | None:intergenic |
| TTGATGGAAATGACATTCTC+TGG | 0.351256 | 7.2:+27457519 | None:intergenic |
| TCGCTTCTTGATTTGGATGA+TGG | 0.354795 | 7.2:-27458263 | MS.gene054815:CDS |
| TGAGCCAGTACTGTGCTTTA+CGG | 0.355371 | 7.2:-27455459 | MS.gene054815:CDS |
| AGTGCATTTACCTGTAAATC+AGG | 0.359305 | 7.2:+27458760 | None:intergenic |
| TTACCGTTTGGTCTGTTTCT+GGG | 0.361497 | 7.2:-27459876 | MS.gene054815:CDS |
| CTAGGTACTCTGGAAAATTT+CGG | 0.370618 | 7.2:+27456299 | None:intergenic |
| CACAGCAGGACCCTCAAGTT+TGG | 0.374030 | 7.2:+27455480 | None:intergenic |
| CCTACTGCGCCATCTTCTTC+AGG | 0.378208 | 7.2:-27457441 | MS.gene054815:intron |
| GCACAGTTTCTTTGTATGAC+TGG | 0.381408 | 7.2:-27460406 | MS.gene054815:CDS |
| TTGAGAATCGTCAAATTGAT+TGG | 0.381924 | 7.2:+27460763 | None:intergenic |
| AGTTCTCTTGGGAGTTGATC+AGG | 0.382777 | 7.2:+27458528 | None:intergenic |
| GCAGATTTGTTCTCTGCTGC+TGG | 0.383709 | 7.2:-27456232 | MS.gene054815:CDS |
| TGTTTGATATTGAGGTCAAA+TGG | 0.384615 | 7.2:-27458293 | MS.gene054815:CDS |
| TCAATATGTGGCAGCTAGTC+AGG | 0.384647 | 7.2:-27459422 | MS.gene054815:CDS |
| GTTCTAGGTGTTTGATATTG+AGG | 0.387765 | 7.2:-27458301 | MS.gene054815:intron |
| TCACGATCAAACTCCAGTTC+TGG | 0.388817 | 7.2:+27457593 | None:intergenic |
| GATTCAGCATAGAGTGAGAT+TGG | 0.389217 | 7.2:-27463414 | MS.gene054815:intron |
| TCTTCCTGCTTAAAAGAATT+GGG | 0.393364 | 7.2:+27457958 | None:intergenic |
| AATAGTGGAGTTGTATGATT+TGG | 0.395053 | 7.2:-27460450 | MS.gene054815:CDS |
| ATGGTTAGATTATGGTCATC+GGG | 0.396279 | 7.2:-27458150 | MS.gene054815:CDS |
| TCATGGTTTGGCTTAGCAAT+TGG | 0.401330 | 7.2:+27459802 | None:intergenic |
| GTGTAAGGGCTTGCTATGGC+TGG | 0.403702 | 7.2:-27459293 | MS.gene054815:CDS |
| CTTTGATCAAGGTGATATCT+TGG | 0.403790 | 7.2:+27458925 | None:intergenic |
| ATCTAAGAAGAAGATGTATA+TGG | 0.408786 | 7.2:-27463832 | None:intergenic |
| CTCAGAAAGAAGAAGAGATA+TGG | 0.410719 | 7.2:+27462435 | None:intergenic |
| AAACCATGCTAGTTACTTGA+TGG | 0.413059 | 7.2:-27454914 | MS.gene054815:CDS |
| ATTGGATGCGGACTTTCTCC+TGG | 0.413743 | 7.2:-27454121 | MS.gene054815:CDS |
| TGAACTTTGGAGCTCTTCCC+AGG | 0.414903 | 7.2:-27463694 | MS.gene054815:intron |
| TCATACTTACAATCATGGTT+TGG | 0.415897 | 7.2:+27459790 | None:intergenic |
| TTGGAGCAGCACCTCATTCA+AGG | 0.419480 | 7.2:-27454977 | MS.gene054815:intron |
| ATTTCTGGGAAGAATGTGAT+TGG | 0.420570 | 7.2:+27460682 | None:intergenic |
| GGAACAAAAGATTCAGTGTA+AGG | 0.421730 | 7.2:-27459308 | MS.gene054815:CDS |
| ACGGCAAAAGCAGAATTATC+AGG | 0.425367 | 7.2:+27459919 | None:intergenic |
| GAGAATGGTCTTTCTCCTAA+AGG | 0.426532 | 7.2:-27460725 | MS.gene054815:CDS |
| ATAGCAATTAATTTAGCATC+AGG | 0.429827 | 7.2:+27463326 | None:intergenic |
| CAGAACTTAAACCTATTTGA+CGG | 0.431302 | 7.2:+27459833 | None:intergenic |
| ATTTAATTGAGGAAGTTTCA+TGG | 0.431801 | 7.2:-27458169 | MS.gene054815:CDS |
| GTTTGATATTGAGGTCAAAT+GGG | 0.432426 | 7.2:-27458292 | MS.gene054815:CDS |
| ATTCTTTATATGAGCTTGCT+GGG | 0.432503 | 7.2:-27455319 | MS.gene054815:CDS |
| ATAGTTTGTGCTTGAGGAGA+TGG | 0.438405 | 7.2:+27457473 | None:intergenic |
| GAGAGAAGGAGAAAACTTGC+AGG | 0.439690 | 7.2:-27463360 | MS.gene054815:CDS |
| ATTCAGCATAGAGTGAGATT+GGG | 0.440995 | 7.2:-27463413 | MS.gene054815:intron |
| ACTTTCATCTGTTGCAAATG+AGG | 0.445330 | 7.2:-27453285 | MS.gene054815:CDS |
| AAGAAGATGTATATGGCATA+TGG | 0.446464 | 7.2:-27463825 | None:intergenic |
| GACAAATCCTTTGCTGCAAA+AGG | 0.448373 | 7.2:+27462406 | None:intergenic |
| AGTTAAGAGGGCTTACCGTT+TGG | 0.448679 | 7.2:-27459888 | MS.gene054815:CDS |
| CCGAATGCCGGTGTAGTTGT+TGG | 0.456730 | 7.2:-27457548 | MS.gene054815:CDS |
| GGAATGTACTTAGCGGTTGC+TGG | 0.457208 | 7.2:-27459397 | MS.gene054815:CDS |
| AAGGTATGGAAGTGCTCGGC+TGG | 0.458411 | 7.2:-27454719 | MS.gene054815:CDS |
| TGGTACACATCCATCACAAT+TGG | 0.459787 | 7.2:+27458868 | None:intergenic |
| TCATGTTCCATTAGTAAGAA+AGG | 0.461863 | 7.2:-27460584 | MS.gene054815:CDS |
| GCCGTTGGGTGGAAGTTAAG+AGG | 0.462550 | 7.2:-27459901 | MS.gene054815:CDS |
| TAAGGAATGGATAGTTGTCC+TGG | 0.462968 | 7.2:-27454076 | MS.gene054815:CDS |
| GCTTCTATATAGATTGTTTG+AGG | 0.464081 | 7.2:-27455698 | MS.gene054815:intron |
| GATTGGGCGTAGGAACCTTT+GGG | 0.464748 | 7.2:+27460699 | None:intergenic |
| CAGGTTTGGTATCCATCTCC+AGG | 0.469553 | 7.2:-27457982 | MS.gene054815:CDS |
| ATATGAGCTTGCTGGGGAGC+TGG | 0.469642 | 7.2:-27455312 | MS.gene054815:intron |
| TTCTTGATTTGGATGATGGA+CGG | 0.470745 | 7.2:-27458259 | MS.gene054815:CDS |
| ATGGCTCATACTTACAATCA+TGG | 0.471688 | 7.2:+27459785 | None:intergenic |
| CATGGTTAGATTATGGTCAT+CGG | 0.471717 | 7.2:-27458151 | MS.gene054815:CDS |
| CATGCTAGTTACTTGATGGC+TGG | 0.472720 | 7.2:-27454910 | MS.gene054815:CDS |
| TTTGATCAAGGTGATATCTT+GGG | 0.473486 | 7.2:+27458926 | None:intergenic |
| GAACTTTGTACAGTATGTCT+TGG | 0.478216 | 7.2:-27461005 | MS.gene054815:CDS |
| CTGGGACTTCTTCCGAATGC+CGG | 0.482815 | 7.2:-27457560 | MS.gene054815:CDS |
| CTAGCTGCCACATATTGAAC+AGG | 0.483121 | 7.2:+27459427 | None:intergenic |
| TCTTGATATTCAATGAATGC+TGG | 0.484723 | 7.2:+27453332 | None:intergenic |
| TGGAATATATGGACATCAAA+TGG | 0.485976 | 7.2:+27458820 | None:intergenic |
| GTGAGGTTCTTACTAAGATC+TGG | 0.486056 | 7.2:-27455185 | MS.gene054815:CDS |
| ACTGTATTAAAGCAGAAAAG+AGG | 0.487137 | 7.2:-27460547 | MS.gene054815:CDS |
| CATTGCAGCAGGATGGCTCT+TGG | 0.492270 | 7.2:+27458560 | None:intergenic |
| GCTGAGAAGGAGACAGTCCT+TGG | 0.495915 | 7.2:+27463778 | None:intergenic |
| CAACACTGACAACAACATCT+AGG | 0.496732 | 7.2:+27456281 | None:intergenic |
| ATGCTAGTTACTTGATGGCT+GGG | 0.497402 | 7.2:-27454909 | MS.gene054815:CDS |
| TGATTGGCCACAGGAGGATG+TGG | 0.501623 | 7.2:+27460779 | None:intergenic |
| TGCTTCAGCAGCTCTTGAGC+AGG | 0.504849 | 7.2:-27460501 | MS.gene054815:CDS |
| ATGTAACAAGTATATAATCT+TGG | 0.508888 | 7.2:+27458848 | None:intergenic |
| TCCAAAGTTCAAAATGAGTA+GGG | 0.509362 | 7.2:+27463706 | None:intergenic |
| CAGGTAATTGCCAAACTTGA+GGG | 0.509523 | 7.2:-27455490 | MS.gene054815:CDS |
| CATATTTAAGAACTGAAACC+TGG | 0.510283 | 7.2:+27456356 | None:intergenic |
| TAAACAATCTTCTGCTGAGA+AGG | 0.511146 | 7.2:+27463765 | None:intergenic |
| TCTTGATTTGGATGATGGAC+GGG | 0.511746 | 7.2:-27458258 | MS.gene054815:CDS |
| TCAAGATTTATTGGAAGACC+TGG | 0.512530 | 7.2:-27453315 | MS.gene054815:CDS |
| TGCAGTATAGTTTGTGCTTG+AGG | 0.513704 | 7.2:+27457467 | None:intergenic |
| CTTCACCATAAATCACTTGT+CGG | 0.514478 | 7.2:+27459620 | None:intergenic |
| CTTGCTGTTGGTACCAGAAG+AGG | 0.515409 | 7.2:-27460473 | MS.gene054815:CDS |
| TGCTTAAAAGAATTGGGACC+TGG | 0.515728 | 7.2:+27457964 | None:intergenic |
| TGCTTGATTTCAGAATTTCT+GGG | 0.516812 | 7.2:+27460668 | None:intergenic |
| AAAGAATTGGGACCTGGAGA+TGG | 0.517815 | 7.2:+27457970 | None:intergenic |
| TAGAACTTTGCCTTTCATTG+AGG | 0.519459 | 7.2:-27460643 | MS.gene054815:CDS |
| GAAGAAGAGATATGGTAGCT+AGG | 0.520786 | 7.2:+27462443 | None:intergenic |
| CCAACAACTACACCGGCATT+CGG | 0.521978 | 7.2:+27457548 | None:intergenic |
| GGAATGAATCGCATTGCAGC+AGG | 0.522804 | 7.2:+27458549 | None:intergenic |
| TGATCGTGAAGTATACCCTC+TGG | 0.523296 | 7.2:-27457579 | MS.gene054815:CDS |
| CTGAATCAGCTGATGATGCT+TGG | 0.524024 | 7.2:+27455150 | None:intergenic |
| GGATAAAACAAATTTAATTG+AGG | 0.524277 | 7.2:-27458180 | MS.gene054815:CDS |
| GAGCAGGAAATTCTTGCTGT+TGG | 0.524367 | 7.2:-27460485 | MS.gene054815:CDS |
| ATGATATACGAATGAAAAGA+TGG | 0.524845 | 7.2:-27459354 | MS.gene054815:CDS |
| TTATGGTCATCGGGGTATGC+AGG | 0.525148 | 7.2:-27458141 | MS.gene054815:intron |
| TGGTACCAGAAGAGGAATAG+TGG | 0.525537 | 7.2:-27460465 | MS.gene054815:CDS |
| ACAACAACATCTAGGTACTC+TGG | 0.526157 | 7.2:+27456289 | None:intergenic |
| TTCTGAGCGAAAGCAAGCAT+TGG | 0.526690 | 7.2:-27455084 | MS.gene054815:CDS |
| AGTGAGGTGCCACCCATCAA+TGG | 0.526700 | 7.2:+27459766 | None:intergenic |
| TGAGGAGATGGCTCAAAACA+TGG | 0.527943 | 7.2:+27457485 | None:intergenic |
| CATGTTCCATTAGTAAGAAA+GGG | 0.528614 | 7.2:-27460583 | MS.gene054815:CDS |
| CCGTTGGGTGGAAGTTAAGA+GGG | 0.529142 | 7.2:-27459900 | MS.gene054815:CDS |
| AAGTGATTTATGGTGAAGAC+AGG | 0.529449 | 7.2:-27459615 | MS.gene054815:CDS |
| TTCACCATAAATCACTTGTC+GGG | 0.530849 | 7.2:+27459621 | None:intergenic |
| GGAGAAAGTCCGCATCCAAT+CGG | 0.530869 | 7.2:+27454124 | None:intergenic |
| TTGTAAGTATGAGCCATTGA+TGG | 0.532619 | 7.2:-27459779 | MS.gene054815:CDS |
| TCAGATTCATTGCAGAGAGA+AGG | 0.533336 | 7.2:-27463374 | MS.gene054815:CDS |
| AGCCTACAGCAGTACCCTGC+AGG | 0.534201 | 7.2:-27453461 | MS.gene054815:intron |
| AGCACTTTGTTCCTTGAATG+AGG | 0.535069 | 7.2:+27454966 | None:intergenic |
| TGTGTGTTATCAGCTTCAAA+TGG | 0.535133 | 7.2:-27454160 | MS.gene054815:intron |
| TCAAAAGGACATTACCTGGC+TGG | 0.536571 | 7.2:+27458456 | None:intergenic |
| CCTGAAGAAGATGGCGCAGT+AGG | 0.537618 | 7.2:+27457441 | None:intergenic |
| GATAAGAAAATACACATTGG+TGG | 0.538131 | 7.2:-27462487 | MS.gene054815:CDS |
| ATGCTGCTTGGACTTTCCGA+TGG | 0.538138 | 7.2:-27461027 | MS.gene054815:CDS |
| AAAATTTCGGATAAGATCAC+AGG | 0.538245 | 7.2:+27456312 | None:intergenic |
| GCTCGAACTAATAAGCCAAA+AGG | 0.539521 | 7.2:-27454680 | MS.gene054815:intron |
| GATAACAAACATATGCTGCT+TGG | 0.540501 | 7.2:-27461039 | MS.gene054815:CDS |
| TTTCTGGGAAGAATGTGATT+GGG | 0.542960 | 7.2:+27460683 | None:intergenic |
| GGTCACTTGTGGCCAGTCTG+AGG | 0.543576 | 7.2:-27458201 | MS.gene054815:CDS |
| CTGCCAGAGGGACAAAATTG+AGG | 0.545884 | 7.2:-27457156 | MS.gene054815:intron |
| CATTAACAGCAGAACCAGCC+AGG | 0.545998 | 7.2:-27458470 | MS.gene054815:intron |
| ACAGGTAATTGCCAAACTTG+AGG | 0.546344 | 7.2:-27455491 | MS.gene054815:intron |
| TGATGGAAATGACATTCTCT+GGG | 0.549283 | 7.2:+27457520 | None:intergenic |
| AATTGAGGAAGCTTTAAGGC+TGG | 0.551432 | 7.2:-27457141 | MS.gene054815:CDS |
| TTACCACATCCGTTAGAGAA+TGG | 0.551605 | 7.2:-27460740 | MS.gene054815:CDS |
| TAATAAATACCTGAAGAAGA+TGG | 0.553033 | 7.2:+27457432 | None:intergenic |
| TGTACAGTATGTCTTGGAAG+GGG | 0.553500 | 7.2:-27460999 | MS.gene054815:CDS |
| GGAGACAGTCCTTGGTCTAG+AGG | 0.553732 | 7.2:+27463786 | None:intergenic |
| ACACCCAGAAACAGACCAAA+CGG | 0.553921 | 7.2:+27459873 | None:intergenic |
| ATAACCGTAAAGCACAGTAC+TGG | 0.555481 | 7.2:+27455455 | None:intergenic |
| TGACCGAGCACATATGAGCC+AGG | 0.558497 | 7.2:+27454103 | None:intergenic |
| TACCTGCAACGCGAAAGGTA+TGG | 0.558618 | 7.2:-27454733 | MS.gene054815:CDS |
| GCTCGGTCAAATTTAAGGAA+TGG | 0.558872 | 7.2:-27454089 | MS.gene054815:CDS |
| TCTCCTGGCTCATATGTGCT+CGG | 0.558981 | 7.2:-27454106 | MS.gene054815:CDS |
| TTTGTACAGTATGTCTTGGA+AGG | 0.559689 | 7.2:-27461001 | MS.gene054815:CDS |
| ACAATTGGTTTCGCAAACAA+TGG | 0.559863 | 7.2:+27458883 | None:intergenic |
| GCACAGTACTGGCTCACAGC+AGG | 0.561193 | 7.2:+27455466 | None:intergenic |
| TGTAAGGGCTTGCTATGGCT+GGG | 0.561816 | 7.2:-27459292 | MS.gene054815:CDS |
| ATAAGAAAATACACATTGGT+GGG | 0.562177 | 7.2:-27462486 | MS.gene054815:CDS |
| GCCCTGTTAGTTGCATTGCA+TGG | 0.564318 | 7.2:-27459945 | MS.gene054815:CDS |
| CTTGATATTCAATGAATGCT+GGG | 0.565281 | 7.2:+27453333 | None:intergenic |
| TATTAAAGCAGAAAAGAGGT+TGG | 0.565728 | 7.2:-27460543 | MS.gene054815:CDS |
| AGACCATTCTCTAACGGATG+TGG | 0.566563 | 7.2:+27460737 | None:intergenic |
| TGGCACCTCACTGATGCAAT+GGG | 0.567490 | 7.2:-27459755 | MS.gene054815:CDS |
| CTCCAAAGTTCAAAATGAGT+AGG | 0.569086 | 7.2:+27463705 | None:intergenic |
| TATGGCATATGGATGGCCTC+AGG | 0.569511 | 7.2:-27463814 | MS.gene054815:CDS |
| TTGGCTTATTAGTTCGAGCC+CGG | 0.570147 | 7.2:+27454684 | None:intergenic |
| TTGTACAGTATGTCTTGGAA+GGG | 0.570723 | 7.2:-27461000 | MS.gene054815:CDS |
| AAACTGGCCTGTTCAATATG+TGG | 0.573052 | 7.2:-27459434 | MS.gene054815:CDS |
| GGTTCTTACTAAGATCTGGT+AGG | 0.574735 | 7.2:-27455181 | MS.gene054815:CDS |
| TACTCTCTTGAGACGTTCCG+AGG | 0.575761 | 7.2:-27454052 | MS.gene054815:intron |
| TTCAGTGTAAGGGCTTGCTA+TGG | 0.577885 | 7.2:-27459297 | MS.gene054815:CDS |
| TTCTAAAATATTCTTAACTG+AGG | 0.578039 | 7.2:+27454936 | None:intergenic |
| GGAGAAAGACCATTCTCTAA+CGG | 0.578114 | 7.2:+27460731 | None:intergenic |
| GGAAACATTACAGAGCCGAT+TGG | 0.583888 | 7.2:-27454139 | MS.gene054815:CDS |
| ACAGTTTCTTTGTATGACTG+GGG | 0.585792 | 7.2:-27460404 | MS.gene054815:CDS |
| GTGGCACCTCACTGATGCAA+TGG | 0.589612 | 7.2:-27459756 | MS.gene054815:CDS |
| CCCTCTTAACTTCCACCCAA+CGG | 0.591267 | 7.2:+27459900 | None:intergenic |
| TACCTGCAGGGTACTGCTGT+AGG | 0.592698 | 7.2:+27453459 | None:intergenic |
| ATTACAGAGCCGATTGGATG+CGG | 0.593677 | 7.2:-27454133 | MS.gene054815:CDS |
| GTTCTTACTAAGATCTGGTA+GGG | 0.594439 | 7.2:-27455180 | MS.gene054815:CDS |
| AGAGCAATGAGCTTTGATCA+AGG | 0.595485 | 7.2:+27458914 | None:intergenic |
| CTTTCCATAACCGAAAATCA+TGG | 0.597088 | 7.2:+27453482 | None:intergenic |
| GGAAAATGCTGTCTTAGCAG+AGG | 0.599320 | 7.2:-27459664 | MS.gene054815:CDS |
| AGGAATACCTGCAACGCGAA+AGG | 0.599585 | 7.2:-27454738 | MS.gene054815:CDS |
| TCGTCAAATTGATTGGCCAC+AGG | 0.599924 | 7.2:+27460770 | None:intergenic |
| ATTCACCAAATAATTTCACA+TGG | 0.600964 | 7.2:+27458800 | None:intergenic |
| GATCGTGAAGTATACCCTCT+GGG | 0.601369 | 7.2:-27457578 | MS.gene054815:CDS |
| GTTTGCGAAACCAATTGTGA+TGG | 0.601649 | 7.2:-27458878 | MS.gene054815:CDS |
| TTCTTTATATGAGCTTGCTG+GGG | 0.602363 | 7.2:-27455318 | MS.gene054815:CDS |
| CAGCCATCAAGTAACTAGCA+TGG | 0.605082 | 7.2:+27454911 | None:intergenic |
| GTACAGTATGTCTTGGAAGG+GGG | 0.606687 | 7.2:-27460998 | MS.gene054815:CDS |
| AACGTCTCAAGAGAGTAGCC+AGG | 0.607197 | 7.2:+27454058 | None:intergenic |
| TTCAGCATAGAGTGAGATTG+GGG | 0.609589 | 7.2:-27463412 | MS.gene054815:intron |
| GGAAGAATGTGATTGGGCGT+AGG | 0.610096 | 7.2:+27460689 | None:intergenic |
| TTCTCCTAAAGGCCTCCCAA+AGG | 0.610785 | 7.2:-27460714 | MS.gene054815:CDS |
| TTGGATAAGAAAATACACAT+TGG | 0.611612 | 7.2:-27462490 | MS.gene054815:CDS |
| CAGTTTCTTTGTATGACTGG+GGG | 0.612432 | 7.2:-27460403 | MS.gene054815:intron |
| AGATGTATATGGCATATGGA+TGG | 0.614454 | 7.2:-27463821 | MS.gene054815:CDS |
| CCATTAGTAAGAAAGGGCTA+AGG | 0.619008 | 7.2:-27460577 | MS.gene054815:CDS |
| TCAGGACGGAATGTACTTAG+CGG | 0.621375 | 7.2:-27459404 | MS.gene054815:CDS |
| GCAGAAAAGAGGTTGGCTTG+TGG | 0.622019 | 7.2:-27460536 | MS.gene054815:CDS |
| CTAAGATAGTTATACCTGCA+GGG | 0.622386 | 7.2:+27453447 | None:intergenic |
| GCCAAATGTAAACAAGAACC+AGG | 0.623286 | 7.2:-27456374 | MS.gene054815:CDS |
| GTAGCTAGGCACAAAGCAGA+AGG | 0.623657 | 7.2:+27462457 | None:intergenic |
| TCAAATTGATTGGCCACAGG+AGG | 0.624459 | 7.2:+27460773 | None:intergenic |
| ATTTGATCCACATCCTCCTG+TGG | 0.625556 | 7.2:-27460786 | MS.gene054815:CDS |
| GGAAACACCAACAACTACAC+CGG | 0.625624 | 7.2:+27457541 | None:intergenic |
| GAGGAGATGGCTCAAAACAT+GGG | 0.625860 | 7.2:+27457486 | None:intergenic |
| GAGAAAACTTGCAGGCTGTG+TGG | 0.625880 | 7.2:-27463352 | MS.gene054815:CDS |
| GAACAAAAGATTCAGTGTAA+GGG | 0.626088 | 7.2:-27459307 | MS.gene054815:CDS |
| TTTGATATTGAGGTCAAATG+GGG | 0.635217 | 7.2:-27458291 | MS.gene054815:CDS |
| GCGAAAGGTATGGAAGTGCT+CGG | 0.636157 | 7.2:-27454723 | MS.gene054815:CDS |
| TGTAAATCAGGATTTCCTGA+AGG | 0.645303 | 7.2:+27458772 | None:intergenic |
| CATACTGTACAAAGTTCCAT+CGG | 0.646577 | 7.2:+27461011 | None:intergenic |
| CCAAAGTTCAAAATGAGTAG+GGG | 0.649551 | 7.2:+27463707 | None:intergenic |
| TGTAAGTATGAGCCATTGAT+GGG | 0.650436 | 7.2:-27459778 | MS.gene054815:CDS |
| TCCATGCAATGCAACTAACA+GGG | 0.651825 | 7.2:+27459944 | None:intergenic |
| TGGGCGTAGGAACCTTTGGG+AGG | 0.655006 | 7.2:+27460702 | None:intergenic |
| CTGATGCAATGGGATGAACA+TGG | 0.657639 | 7.2:-27459745 | MS.gene054815:CDS |
| TGAATCGCATTGCAGCAGGA+TGG | 0.657956 | 7.2:+27458553 | None:intergenic |
| ATATAGACTTTATGCTATCG+AGG | 0.659598 | 7.2:-27459722 | MS.gene054815:CDS |
| TATGTGGCAGCTAGTCAGGA+CGG | 0.664154 | 7.2:-27459418 | MS.gene054815:CDS |
| AGTCTTTGGAGATGTTACCC+AGG | 0.680429 | 7.2:-27459329 | MS.gene054815:CDS |
| TGGTCTAGAGGAATGACCTG+AGG | 0.683573 | 7.2:+27463798 | None:intergenic |
| CAGGTCATTCCTCTAGACCA+AGG | 0.688183 | 7.2:-27463795 | MS.gene054815:CDS |
| TTCATCCCATTGCATCAGTG+AGG | 0.699050 | 7.2:+27459750 | None:intergenic |
| CATTCGGAAGAAGTCCCAGA+GGG | 0.700446 | 7.2:+27457564 | None:intergenic |
| TGGTTAGATTATGGTCATCG+GGG | 0.716825 | 7.2:-27458149 | MS.gene054815:CDS |
| AAGTATGAGCCATTGATGGG+TGG | 0.726456 | 7.2:-27459775 | MS.gene054815:CDS |
| GCATTCGGAAGAAGTCCCAG+AGG | 0.753296 | 7.2:+27457563 | None:intergenic |
| GTATATAGCAAGCTGCAGTG+CGG | 0.764014 | 7.2:+27455653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 27453274 | 27463841 | 27453274 | ID=MS.gene054815 |
| chr7.2 | mRNA | 27453274 | 27463841 | 27453274 | ID=MS.gene054815.t1;Parent=MS.gene054815 |
| chr7.2 | exon | 27463695 | 27463841 | 27463695 | ID=MS.gene054815.t1.exon1;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27463695 | 27463841 | 27463695 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27463322 | 27463429 | 27463322 | ID=MS.gene054815.t1.exon2;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27463322 | 27463429 | 27463322 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27462403 | 27462551 | 27462403 | ID=MS.gene054815.t1.exon3;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27462403 | 27462551 | 27462403 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27460996 | 27461077 | 27460996 | ID=MS.gene054815.t1.exon4;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27460996 | 27461077 | 27460996 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27460404 | 27460825 | 27460404 | ID=MS.gene054815.t1.exon5;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27460404 | 27460825 | 27460404 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27459555 | 27459987 | 27459555 | ID=MS.gene054815.t1.exon6;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27459555 | 27459987 | 27459555 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27459250 | 27459473 | 27459250 | ID=MS.gene054815.t1.exon7;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27459250 | 27459473 | 27459250 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27458771 | 27458966 | 27458771 | ID=MS.gene054815.t1.exon8;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27458771 | 27458966 | 27458771 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27458471 | 27458616 | 27458471 | ID=MS.gene054815.t1.exon9;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27458471 | 27458616 | 27458471 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27458142 | 27458316 | 27458142 | ID=MS.gene054815.t1.exon10;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27458142 | 27458316 | 27458142 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27457948 | 27458001 | 27457948 | ID=MS.gene054815.t1.exon11;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27457948 | 27458001 | 27457948 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27457442 | 27457621 | 27457442 | ID=MS.gene054815.t1.exon12;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27457442 | 27457621 | 27457442 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27457059 | 27457171 | 27457059 | ID=MS.gene054815.t1.exon13;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27457059 | 27457171 | 27457059 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27456220 | 27456396 | 27456220 | ID=MS.gene054815.t1.exon14;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27456220 | 27456396 | 27456220 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27455651 | 27455708 | 27455651 | ID=MS.gene054815.t1.exon15;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27455651 | 27455708 | 27455651 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27455450 | 27455509 | 27455450 | ID=MS.gene054815.t1.exon16;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27455450 | 27455509 | 27455450 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27455313 | 27455354 | 27455313 | ID=MS.gene054815.t1.exon17;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27455313 | 27455354 | 27455313 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27455077 | 27455207 | 27455077 | ID=MS.gene054815.t1.exon18;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27455077 | 27455207 | 27455077 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27454855 | 27454990 | 27454855 | ID=MS.gene054815.t1.exon19;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27454855 | 27454990 | 27454855 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27454681 | 27454758 | 27454681 | ID=MS.gene054815.t1.exon20;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27454681 | 27454758 | 27454681 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27454053 | 27454169 | 27454053 | ID=MS.gene054815.t1.exon21;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27454053 | 27454169 | 27454053 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27453462 | 27453524 | 27453462 | ID=MS.gene054815.t1.exon22;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27453462 | 27453524 | 27453462 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| chr7.2 | exon | 27453274 | 27453360 | 27453274 | ID=MS.gene054815.t1.exon23;Parent=MS.gene054815.t1 |
| chr7.2 | CDS | 27453274 | 27453360 | 27453274 | ID=cds.MS.gene054815.t1;Parent=MS.gene054815.t1 |
| Gene Sequence |
| Protein sequence |
