AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05503

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05503.t1 MTR_6g086510 93.822 259 16 0 35 293 107 365 2.37e-180 503
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05503.t1 AT5G19460 69.582 263 76 2 35 293 91 353 4.53e-127 367
MS.gene05503.t1 AT5G19470 63.158 266 93 2 35 299 89 350 3.36e-116 340
MS.gene05503.t1 AT5G19470 64.093 259 88 2 35 292 89 343 3.89e-114 334

Find 81 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTGCAGCTCCTTATTT+TGG 0.177594 6.2:-84221275 MS.gene05503:CDS
CTCTTTGAAGCATAGGCTTA+TGG 0.222290 6.2:-84220890 MS.gene05503:intron
ATTTCTGCAACTTGCTTAAC+AGG 0.232793 6.2:+84219844 None:intergenic
TGTACCTTTATGCCAAAATA+AGG 0.246886 6.2:+84221263 None:intergenic
TGGCTATGTAATCAAGCATT+TGG 0.309149 6.2:-84221487 MS.gene05503:CDS
TGTTGGTGCTGTTTCATATA+TGG 0.322857 6.2:-84220079 MS.gene05503:CDS
ATGATCACGACAGCACAATT+TGG 0.337212 6.2:+84219796 None:intergenic
ATCAAAGGGGCTTCCATCAT+TGG 0.353361 6.2:+84221566 None:intergenic
TTGGGAGAGGAGCATATTCC+AGG 0.372454 6.2:-84221468 MS.gene05503:CDS
ATGCTTGATCATCTAGTTGC+AGG 0.394775 6.2:-84220779 MS.gene05503:CDS
AGAAATACCCGTGTCGAAAC+AGG 0.401405 6.2:+84219767 None:intergenic
AGTGGCTATGTTGAGATAGA+TGG 0.405918 6.2:-84220857 MS.gene05503:CDS
GGCTATGTAATCAAGCATTT+GGG 0.422134 6.2:-84221486 MS.gene05503:CDS
TCCTCAGCTGTCTTCAGTGA+TGG 0.435427 6.2:+84221525 None:intergenic
CAAACACATATTTCATAAGT+AGG 0.436574 6.2:+84219711 None:intergenic
TCCCGTTCTGTTCCTTGTTG+TGG 0.443508 6.2:-84222617 MS.gene05503:CDS
TCAAAGGGGCTTCCATCATT+GGG 0.448009 6.2:+84221567 None:intergenic
CGTTCTAATGAAAAGAAAAC+GGG 0.450446 6.2:+84221296 None:intergenic
AGGAGCATATTCCAGGTATA+CGG 0.452411 6.2:-84221461 MS.gene05503:CDS
CACACGAAATCCACATATCC+TGG 0.461613 6.2:-84220803 MS.gene05503:CDS
TTTCTTCCATTTGTCATTGA+GGG 0.468948 6.2:-84221755 MS.gene05503:CDS
TCTCAACATAGCCACTCATA+TGG 0.469522 6.2:+84220864 None:intergenic
ACCACAACAAGGAACAGAAC+GGG 0.473000 6.2:+84222616 None:intergenic
GCCGCATGGAATTGATTGTC+AGG 0.474919 6.2:-84220522 MS.gene05503:CDS
AAGGAATGTGAAGAGGAAGC+AGG 0.475425 6.2:-84220488 MS.gene05503:CDS
TCATCTAGTTGCAGGAGGAC+TGG 0.475914 6.2:-84220771 MS.gene05503:intron
ACTAGATGATCAAGCATTCC+AGG 0.480283 6.2:+84220785 None:intergenic
GTCATTGAGGGCGATGTTGT+TGG 0.484015 6.2:-84221743 MS.gene05503:CDS
ACATCGCCCTCAATGACAAA+TGG 0.490072 6.2:+84221749 None:intergenic
ACGTTCTAATGAAAAGAAAA+CGG 0.490303 6.2:+84221295 None:intergenic
CCGAACTTACTTAATAGAGA+TGG 0.490700 6.2:+84220454 None:intergenic
GTTCTGTTCCTTGTTGTGGT+TGG 0.495027 6.2:-84222613 MS.gene05503:CDS
AAAGACAACTCCAACCTTGT+CGG 0.497590 6.2:+84222645 None:intergenic
GAGGAAAGAACCAGCGCACT+TGG 0.499212 6.2:-84221507 MS.gene05503:CDS
TTGTCAAATGAGGACTTCAC+AGG 0.500036 6.2:+84221320 None:intergenic
TTTCATATATGGACATCGAC+GGG 0.501956 6.2:-84220068 MS.gene05503:CDS
ATTTCTTCCATTTGTCATTG+AGG 0.503126 6.2:-84221756 MS.gene05503:CDS
TAGATGGGCAGAAGCACCTA+TGG 0.503368 6.2:-84220841 MS.gene05503:CDS
AATGAAACACAGTTATCAAA+GGG 0.505360 6.2:+84221552 None:intergenic
AATACCTCGTTCCGTATACC+TGG 0.509788 6.2:+84221450 None:intergenic
ATATATGAAACAGCACCAAC+AGG 0.512369 6.2:+84220081 None:intergenic
TTGTCAGGAAAATGTTGTAA+AGG 0.514029 6.2:-84220507 MS.gene05503:CDS
TCGACGGGGATAGATACAAA+AGG 0.523200 6.2:-84220053 MS.gene05503:CDS
ATCAAGCATTCCAGGATATG+TGG 0.524432 6.2:+84220793 None:intergenic
GGGAGGTGGTTCCCATGTGT+AGG 0.529378 6.2:-84222779 None:intergenic
AGGTTTGTTGAGCATTTGAG+AGG 0.531644 6.2:-84221612 MS.gene05503:CDS
TTGACTTCCTGTTTCGACAC+GGG 0.535466 6.2:-84219774 MS.gene05503:CDS
TTGCTACTGTTGCAGCCGCA+TGG 0.541001 6.2:-84220536 MS.gene05503:intron
AAACACATATTTCATAAGTA+GGG 0.547720 6.2:+84219712 None:intergenic
GATTACATAGCCAAGTGCGC+TGG 0.549224 6.2:+84221497 None:intergenic
CACTCTGCAAAACCTACACA+TGG 0.554093 6.2:+84222767 None:intergenic
TACTTAATAGAGATGGACCT+GGG 0.564877 6.2:+84220461 None:intergenic
CAATGAAACACAGTTATCAA+AGG 0.565086 6.2:+84221551 None:intergenic
GTGGGAGTGTCCGACAAGGT+TGG 0.574734 6.2:-84222655 MS.gene05503:CDS
TCTTGCAGAGCTAAACCTGT+TGG 0.576211 6.2:-84220096 MS.gene05503:intron
AAGAGGAAGCAGGAATCCCC+AGG 0.577108 6.2:-84220478 MS.gene05503:CDS
CGACGGGGATAGATACAAAA+GGG 0.578922 6.2:-84220052 MS.gene05503:CDS
GAAAACGGGTTTGTCAAATG+AGG 0.582709 6.2:+84221310 None:intergenic
GACTTCTCTTCGCTATCCAT+AGG 0.590285 6.2:+84220825 None:intergenic
TTTCTTGTAGGACAAACTAT+CGG 0.591883 6.2:-84221780 MS.gene05503:intron
TTTCTGCAACTTGCTTAACA+GGG 0.595814 6.2:+84219845 None:intergenic
TGTAATCAAGCATTTGGGAG+AGG 0.598268 6.2:-84221481 MS.gene05503:CDS
TGTTGTAAAGGAATGTGAAG+AGG 0.609830 6.2:-84220495 MS.gene05503:CDS
GTTTCATATATGGACATCGA+CGG 0.610300 6.2:-84220069 MS.gene05503:CDS
ATTGACTTCCTGTTTCGACA+CGG 0.610821 6.2:-84219775 MS.gene05503:CDS
GTGGCTATGTTGAGATAGAT+GGG 0.621537 6.2:-84220856 MS.gene05503:CDS
AACCACAACAAGGAACAGAA+CGG 0.622939 6.2:+84222615 None:intergenic
GCTTATGGAGTCCATATGAG+TGG 0.651417 6.2:-84220875 MS.gene05503:CDS
TTACTTAATAGAGATGGACC+TGG 0.657192 6.2:+84220460 None:intergenic
CTTGATCATCTAGTTGCAGG+AGG 0.661487 6.2:-84220776 MS.gene05503:CDS
TCCTGACAATCAATTCCATG+CGG 0.664669 6.2:+84220521 None:intergenic
AGTGGTGGGAGTGTCCGACA+AGG 0.674705 6.2:-84222659 MS.gene05503:CDS
AAGAAATGTATGAAATGACG+TGG 0.675165 6.2:+84219736 None:intergenic
TGTCAAATGAGGACTTCACA+GGG 0.682552 6.2:+84221321 None:intergenic
TCCATCACTGAAGACAGCTG+AGG 0.709154 6.2:-84221526 MS.gene05503:CDS
TTCATATATGGACATCGACG+GGG 0.710863 6.2:-84220067 MS.gene05503:CDS
ACTTAATAGAGATGGACCTG+GGG 0.711401 6.2:+84220462 None:intergenic
GTAGATGTCCAACCACAACA+AGG 0.716239 6.2:+84222605 None:intergenic
ACTCTGCAAAACCTACACAT+GGG 0.721469 6.2:+84222768 None:intergenic
TATTCCAGGTATACGGAACG+AGG 0.728323 6.2:-84221454 MS.gene05503:intron
ATGAAACACAGTTATCAAAG+GGG 0.729068 6.2:+84221553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATACTATAAATTTAGTT+TGG + chr6.2:84221277-84221296 None:intergenic 15.0%
!!! TATAATTTTTTAAAAGGCAA+CGG + chr6.2:84220222-84220241 None:intergenic 15.0%
!! AAGGATGAAATTAATATCAA+CGG - chr6.2:84221861-84221880 MS.gene05503:intron 20.0%
!! GTCAAAATAATTCTTGTATA+CGG + chr6.2:84220364-84220383 None:intergenic 20.0%
!! TTATATAGCTGCTAAAAAAA+AGG + chr6.2:84221379-84221398 None:intergenic 20.0%
!! TTGTTACATTAAATAACAGA+TGG - chr6.2:84222596-84222615 MS.gene05503:CDS 20.0%
!!! AATGCTTTTTTATATAGTTC+CGG - chr6.2:84220083-84220102 MS.gene05503:CDS 20.0%
!!! TCAATAACACTTTATTTACA+AGG + chr6.2:84220680-84220699 None:intergenic 20.0%
!!! TTGATTTTGAAATTTCTTGT+AGG - chr6.2:84220696-84220715 MS.gene05503:intron 20.0%
! AAATTAATGCTGTTATGTCA+TGG - chr6.2:84220406-84220425 MS.gene05503:intron 25.0%
! AAGAAATGTTTAACATGTCA+AGG + chr6.2:84221790-84221809 None:intergenic 25.0%
! AATGAAACACAGTTATCAAA+GGG + chr6.2:84220939-84220958 None:intergenic 25.0%
! AATGTAACAAGTTACTACAA+AGG + chr6.2:84222586-84222605 None:intergenic 25.0%
! AATTGGAGAATGAGTTTAAA+AGG + chr6.2:84222524-84222543 None:intergenic 25.0%
! ACGTTCTAATGAAAAGAAAA+CGG + chr6.2:84221196-84221215 None:intergenic 25.0%
! AGAAATGTTTAACATGTCAA+GGG + chr6.2:84221789-84221808 None:intergenic 25.0%
! AGGAGTTATTTATCATTTGA+TGG - chr6.2:84220043-84220062 MS.gene05503:CDS 25.0%
! GTAAAAGAAAAATGAAGAGA+AGG + chr6.2:84220798-84220817 None:intergenic 25.0%
! GTTAAACTTATGGTTATCAA+GGG + chr6.2:84220258-84220277 None:intergenic 25.0%
! TATATGTACCCAAAAAATCT+TGG + chr6.2:84220611-84220630 None:intergenic 25.0%
! TGAAATTAATATCAACGGAT+TGG - chr6.2:84221866-84221885 MS.gene05503:intron 25.0%
! TGTTAAACTTATGGTTATCA+AGG + chr6.2:84220259-84220278 None:intergenic 25.0%
!! AATCAAATTTTGTGCACTAA+AGG + chr6.2:84222086-84222105 None:intergenic 25.0%
!! GCTATTAAGTGTTTTCTTTA+GGG - chr6.2:84221897-84221916 MS.gene05503:intron 25.0%
!! TGCTATTAAGTGTTTTCTTT+AGG - chr6.2:84221896-84221915 MS.gene05503:intron 25.0%
!!! TTACTTTGCCAAGATTTTTT+GGG - chr6.2:84220600-84220619 MS.gene05503:intron 25.0%
!!! TTTTATTCTCTTTGAAGCAT+AGG - chr6.2:84221591-84221610 MS.gene05503:CDS 25.0%
AAAAAACTCCCTGATAGAAA+CGG + chr6.2:84220125-84220144 None:intergenic 30.0%
AAAACACAGACAAGAAATGT+AGG + chr6.2:84221137-84221156 None:intergenic 30.0%
AAAATTAACTTTACATGCGC+AGG + chr6.2:84220657-84220676 None:intergenic 30.0%
AAGAAATGTATGAAATGACG+TGG + chr6.2:84222755-84222774 None:intergenic 30.0%
AATAGAAGACATGTAATGAG+AGG + chr6.2:84221459-84221478 None:intergenic 30.0%
AGCAAATGGTTGGATATTTA+TGG + chr6.2:84222334-84222353 None:intergenic 30.0%
ATACTAAACTTGACTCACAA+TGG + chr6.2:84220295-84220314 None:intergenic 30.0%
ATGAAACACAGTTATCAAAG+GGG + chr6.2:84220938-84220957 None:intergenic 30.0%
ATTTCTTCCATTTGTCATTG+AGG - chr6.2:84220732-84220751 MS.gene05503:intron 30.0%
CAATGAAACACAGTTATCAA+AGG + chr6.2:84220940-84220959 None:intergenic 30.0%
CATTCAATGAAAGAGAATGA+TGG + chr6.2:84221094-84221113 None:intergenic 30.0%
CCATCTCTATTAAGTAAGTT+CGG - chr6.2:84222034-84222053 MS.gene05503:intron 30.0%
CCATTCATGAATAACAAAAC+AGG + chr6.2:84220837-84220856 None:intergenic 30.0%
CGTTCTAATGAAAAGAAAAC+GGG + chr6.2:84221195-84221214 None:intergenic 30.0%
CTAAAAAAAAGGTCTGAACT+TGG + chr6.2:84221368-84221387 None:intergenic 30.0%
CTATTAAGTAAGTTCGGAAA+TGG - chr6.2:84222040-84222059 MS.gene05503:intron 30.0%
GAGCTAAACGAAAAATAGAT+AGG + chr6.2:84220021-84220040 None:intergenic 30.0%
GGGTAATATGTATTATCATC+CGG - chr6.2:84221917-84221936 MS.gene05503:intron 30.0%
TAACCTTAACAGTAGATTCT+GGG - chr6.2:84220315-84220334 MS.gene05503:intron 30.0%
TATATAGATGGTGCACATAT+TGG - chr6.2:84220449-84220468 MS.gene05503:intron 30.0%
TCTCAAATTAACACCAATGT+CGG - chr6.2:84222219-84222238 MS.gene05503:intron 30.0%
TGCGAATGATGTTAAACTTA+TGG + chr6.2:84220268-84220287 None:intergenic 30.0%
TGTACCTTTATGCCAAAATA+AGG + chr6.2:84221228-84221247 None:intergenic 30.0%
TTAACCTTAACAGTAGATTC+TGG - chr6.2:84220314-84220333 MS.gene05503:intron 30.0%
TTGTATCCTAAAGCTCTTAT+CGG - chr6.2:84221544-84221563 MS.gene05503:CDS 30.0%
TTGTCAGGAAAATGTTGTAA+AGG - chr6.2:84221981-84222000 MS.gene05503:intron 30.0%
TTTATATAGTTCCGGTGTAT+TGG - chr6.2:84220091-84220110 MS.gene05503:CDS 30.0%
TTTCTAATGCAGATTCGTTT+CGG - chr6.2:84219938-84219957 MS.gene05503:intron 30.0%
TTTCTTCCATTTGTCATTGA+GGG - chr6.2:84220733-84220752 MS.gene05503:intron 30.0%
TTTCTTGTAGGACAAACTAT+CGG - chr6.2:84220708-84220727 MS.gene05503:intron 30.0%
! ACGGATTTTCACAAAATATG+TGG - chr6.2:84220496-84220515 MS.gene05503:CDS 30.0%
! ATGTCTATAATCTAAAGTGC+CGG + chr6.2:84222144-84222163 None:intergenic 30.0%
! GGATTTTTCATTTCAGCAAA+TGG + chr6.2:84222348-84222367 None:intergenic 30.0%
! TTTTCATTTCAGCAAATGGT+TGG + chr6.2:84222344-84222363 None:intergenic 30.0%
! TTTTGTGAAAATCCGTTTGT+TGG + chr6.2:84220492-84220511 None:intergenic 30.0%
!! CTATTTTTCGTTTAGCTCAT+AGG - chr6.2:84220023-84220042 MS.gene05503:CDS 30.0%
!!! CCTGTTTTGTTATTCATGAA+TGG - chr6.2:84220834-84220853 MS.gene05503:CDS 30.0%
!!! CTTACTTTGCCAAGATTTTT+TGG - chr6.2:84220599-84220618 MS.gene05503:intron 30.0%
!!! TTACTGTTTTTGTCAGTCTT+GGG - chr6.2:84219755-84219774 MS.gene05503:CDS 30.0%
!!! TTTACTGTTTTTGTCAGTCT+TGG - chr6.2:84219754-84219773 MS.gene05503:CDS 30.0%
AATGTAATCACATGTGTCAG+TGG + chr6.2:84222184-84222203 None:intergenic 35.0%
ACAATTGAATCCGTGACTTA+AGG - chr6.2:84220338-84220357 MS.gene05503:intron 35.0%
ACAGACAAGAAATGTAGGTT+AGG + chr6.2:84221132-84221151 None:intergenic 35.0%
ATATATGAAACAGCACCAAC+AGG + chr6.2:84222410-84222429 None:intergenic 35.0%
CCAATGAAGAGACATTTAAC+TGG + chr6.2:84222369-84222388 None:intergenic 35.0%
CCAGTTAAATGTCTCTTCAT+TGG - chr6.2:84222366-84222385 MS.gene05503:intron 35.0%
CCGAACTTACTTAATAGAGA+TGG + chr6.2:84222037-84222056 None:intergenic 35.0%
CTAAACTTGGACAGAGATAA+CGG + chr6.2:84221336-84221355 None:intergenic 35.0%
GACATGTAATGAGAGGTAAT+TGG + chr6.2:84221452-84221471 None:intergenic 35.0%
GATAATGTGTAACTGCTGAA+AGG - chr6.2:84221842-84221861 MS.gene05503:intron 35.0%
GGCTATGTAATCAAGCATTT+GGG - chr6.2:84221002-84221021 MS.gene05503:intron 35.0%
GTAGCAATTAACTCAAACTC+CGG + chr6.2:84221939-84221958 None:intergenic 35.0%
GTTTCATATATGGACATCGA+CGG - chr6.2:84222419-84222438 MS.gene05503:intron 35.0%
TACTTAATAGAGATGGACCT+GGG + chr6.2:84222030-84222049 None:intergenic 35.0%
TGCACATATTGGTGAAAAGT+GGG - chr6.2:84220460-84220479 MS.gene05503:intron 35.0%
TGGCTATGTAATCAAGCATT+TGG - chr6.2:84221001-84221020 MS.gene05503:intron 35.0%
TGTTGTAAAGGAATGTGAAG+AGG - chr6.2:84221993-84222012 MS.gene05503:intron 35.0%
TTACTTAATAGAGATGGACC+TGG + chr6.2:84222031-84222050 None:intergenic 35.0%
TTGGATAGCATTGCTAAACT+TGG + chr6.2:84221349-84221368 None:intergenic 35.0%
TTTCATATATGGACATCGAC+GGG - chr6.2:84222420-84222439 MS.gene05503:intron 35.0%
! AGCTAACTGAACTTCTTTTG+TGG - chr6.2:84222272-84222291 MS.gene05503:intron 35.0%
! ATTTCTGCAACTTGCTTAAC+AGG + chr6.2:84222647-84222666 None:intergenic 35.0%
! CAAATTTTGTGCACTAAAGG+AGG + chr6.2:84222083-84222102 None:intergenic 35.0%
! TTTCTGCAACTTGCTTAACA+GGG + chr6.2:84222646-84222665 None:intergenic 35.0%
!! AAGAGCTTTAGGATACAATC+TGG + chr6.2:84221542-84221561 None:intergenic 35.0%
!! GTGTTTGTTTTTCCCAATGA+TGG - chr6.2:84220909-84220928 MS.gene05503:intron 35.0%
!! GTTAAACTCTGAAACTGTTC+AGG - chr6.2:84220856-84220875 MS.gene05503:CDS 35.0%
!! TCTCTTGACAGCAGTTTTAT+TGG - chr6.2:84219962-84219981 MS.gene05503:intron 35.0%
!! TGTTGGTGCTGTTTCATATA+TGG - chr6.2:84222409-84222428 MS.gene05503:intron 35.0%
!!! ACATCGTCTAGTTTTCTTGT+CGG - chr6.2:84219904-84219923 MS.gene05503:intron 35.0%
!!! AGCTCCTTATTTTGGCATAA+AGG - chr6.2:84221221-84221240 MS.gene05503:intron 35.0%
!!! AGGGAGTTTTTTTAGCACAT+TGG - chr6.2:84220133-84220152 MS.gene05503:intron 35.0%
AAAGACAACTCCAACCTTGT+CGG + chr6.2:84219846-84219865 None:intergenic 40.0%
AACCACAACAAGGAACAGAA+CGG + chr6.2:84219876-84219895 None:intergenic 40.0%
ACTAGATGATCAAGCATTCC+AGG + chr6.2:84221706-84221725 None:intergenic 40.0%
ACTATTGGCCGTTTCTATCA+GGG - chr6.2:84220114-84220133 MS.gene05503:intron 40.0%
ACTTAATAGAGATGGACCTG+GGG + chr6.2:84222029-84222048 None:intergenic 40.0%
AGAAGCAATCCAACTCAAAC+TGG + chr6.2:84219809-84219828 None:intergenic 40.0%
AGTGGCTATGTTGAGATAGA+TGG - chr6.2:84221631-84221650 MS.gene05503:intron 40.0%
ATCAAGCATTCCAGGATATG+TGG + chr6.2:84221698-84221717 None:intergenic 40.0%
ATGATCACGACAGCACAATT+TGG + chr6.2:84222695-84222714 None:intergenic 40.0%
ATGCTTGATCATCTAGTTGC+AGG - chr6.2:84221709-84221728 MS.gene05503:intron 40.0%
CTGTAACCGATAAGAGCTTT+AGG + chr6.2:84221553-84221572 None:intergenic 40.0%
GCACATATTGGTGAAAAGTG+GGG - chr6.2:84220461-84220480 MS.gene05503:intron 40.0%
GCAGTTACACATTATCAGCA+CGG + chr6.2:84221838-84221857 None:intergenic 40.0%
GGAGACGAGGAGAATAAAAT+TGG + chr6.2:84222541-84222560 None:intergenic 40.0%
GTGCACATATTGGTGAAAAG+TGG - chr6.2:84220459-84220478 MS.gene05503:intron 40.0%
GTGGCTATGTTGAGATAGAT+GGG - chr6.2:84221632-84221651 MS.gene05503:intron 40.0%
TCCTGACAATCAATTCCATG+CGG + chr6.2:84221970-84221989 None:intergenic 40.0%
TCTCAACATAGCCACTCATA+TGG + chr6.2:84221627-84221646 None:intergenic 40.0%
TGTAATCAAGCATTTGGGAG+AGG - chr6.2:84221007-84221026 MS.gene05503:intron 40.0%
TGTCAAATGAGGACTTCACA+GGG + chr6.2:84221170-84221189 None:intergenic 40.0%
TGTCCCAGAATCTACTGTTA+AGG + chr6.2:84220321-84220340 None:intergenic 40.0%
TGTGTAGTTCCAGTTTGAGT+TGG - chr6.2:84219797-84219816 MS.gene05503:CDS 40.0%
TTCATATATGGACATCGACG+GGG - chr6.2:84222421-84222440 MS.gene05503:intron 40.0%
TTGTATACGGCCTTAAGTCA+CGG + chr6.2:84220351-84220370 None:intergenic 40.0%
TTGTCAAATGAGGACTTCAC+AGG + chr6.2:84221171-84221190 None:intergenic 40.0%
! AAGCTCTTATCGGTTACAGT+TGG - chr6.2:84221554-84221573 MS.gene05503:CDS 40.0%
! AGGAGCATATTCCAGGTATA+CGG - chr6.2:84221027-84221046 MS.gene05503:intron 40.0%
! ATGTGTAGGTTTTGCAGAGT+GGG - chr6.2:84219723-84219742 MS.gene05503:CDS 40.0%
! ATTGACTTCCTGTTTCGACA+CGG - chr6.2:84222713-84222732 MS.gene05503:intron 40.0%
! GAAAACGGGTTTGTCAAATG+AGG + chr6.2:84221181-84221200 None:intergenic 40.0%
!! AAAGGCACACCTTCGTTTTT+CGG + chr6.2:84222506-84222525 None:intergenic 40.0%
!! AGGTTTGTTGAGCATTTGAG+AGG - chr6.2:84220876-84220895 MS.gene05503:CDS 40.0%
!! CTCTTTGAAGCATAGGCTTA+TGG - chr6.2:84221598-84221617 MS.gene05503:CDS 40.0%
!! TTGAGTTGGATTGCTTCTAG+TGG - chr6.2:84219811-84219830 MS.gene05503:CDS 40.0%
!! TTTTTCGGCACAAAGCTTTC+TGG + chr6.2:84222491-84222510 None:intergenic 40.0%
AAGGAATGTGAAGAGGAAGC+AGG - chr6.2:84222000-84222019 MS.gene05503:intron 45.0%
AATACCTCGTTCCGTATACC+TGG + chr6.2:84221041-84221060 None:intergenic 45.0%
ACATCGCCCTCAATGACAAA+TGG + chr6.2:84220742-84220761 None:intergenic 45.0%
ACCACAACAAGGAACAGAAC+GGG + chr6.2:84219875-84219894 None:intergenic 45.0%
AGAAATACCCGTGTCGAAAC+AGG + chr6.2:84222724-84222743 None:intergenic 45.0%
AGTGGGGTGAAACCAACAAA+CGG - chr6.2:84220477-84220496 MS.gene05503:CDS 45.0%
AGTTGGATTGCTTCTAGTGG+TGG - chr6.2:84219814-84219833 MS.gene05503:CDS 45.0%
ATCAAAGGGGCTTCCATCAT+TGG + chr6.2:84220925-84220944 None:intergenic 45.0%
ATTGGCTGTCAGCAACTTTG+TGG - chr6.2:84219980-84219999 MS.gene05503:intron 45.0%
CACACGAAATCCACATATCC+TGG - chr6.2:84221685-84221704 MS.gene05503:intron 45.0%
CGACGGGGATAGATACAAAA+GGG - chr6.2:84222436-84222455 MS.gene05503:intron 45.0%
CTTGATCATCTAGTTGCAGG+AGG - chr6.2:84221712-84221731 MS.gene05503:intron 45.0%
GACTATTGGCCGTTTCTATC+AGG - chr6.2:84220113-84220132 MS.gene05503:intron 45.0%
GACTTCTCTTCGCTATCCAT+AGG + chr6.2:84221666-84221685 None:intergenic 45.0%
GCTTATGGAGTCCATATGAG+TGG - chr6.2:84221613-84221632 MS.gene05503:CDS 45.0%
GTAGATGTCCAACCACAACA+AGG + chr6.2:84219886-84219905 None:intergenic 45.0%
GTTCCGGTGTATTGGACTAT+TGG - chr6.2:84220099-84220118 MS.gene05503:intron 45.0%
GTTGGATTGCTTCTAGTGGT+GGG - chr6.2:84219815-84219834 MS.gene05503:CDS 45.0%
TATTCCAGGTATACGGAACG+AGG - chr6.2:84221034-84221053 MS.gene05503:intron 45.0%
TCAAAGGGGCTTCCATCATT+GGG + chr6.2:84220924-84220943 None:intergenic 45.0%
TCGACGGGGATAGATACAAA+AGG - chr6.2:84222435-84222454 MS.gene05503:intron 45.0%
TCTTGCAGAGCTAAACCTGT+TGG - chr6.2:84222392-84222411 MS.gene05503:intron 45.0%
TGATCACGACACTACTGGAA+AGG + chr6.2:84222562-84222581 None:intergenic 45.0%
TTGACTTCCTGTTTCGACAC+GGG - chr6.2:84222714-84222733 MS.gene05503:intron 45.0%
TTGTGCACTAAAGGAGGAGA+AGG + chr6.2:84222077-84222096 None:intergenic 45.0%
! AAGGTTGATCACGACACTAC+TGG + chr6.2:84222567-84222586 None:intergenic 45.0%
! AGCTTTGTGCCGAAAAACGA+AGG - chr6.2:84222494-84222513 MS.gene05503:intron 45.0%
! AGTTTTCTTGTCGGCAGTGT+TGG - chr6.2:84219913-84219932 MS.gene05503:intron 45.0%
! GTTCTGTTCCTTGTTGTGGT+TGG - chr6.2:84219875-84219894 MS.gene05503:CDS 45.0%
! TCGCAAGTCTCGTTACTTTG+TGG - chr6.2:84220167-84220186 MS.gene05503:intron 45.0%
!! TATATATATATATATATAGA+TGG - chr6.2:84220437-84220456 MS.gene05503:intron 5.0%
!!! TACATATATAATTTTTTAAA+AGG + chr6.2:84220228-84220247 None:intergenic 5.0%
ACACTACTGGAAAGGAGACG+AGG + chr6.2:84222554-84222573 None:intergenic 50.0%
AGGACTTCACAGGGTATAGC+TGG + chr6.2:84221161-84221180 None:intergenic 50.0%
CGGCCAATAGTCCAATACAC+CGG + chr6.2:84220105-84220124 None:intergenic 50.0%
GATTACATAGCCAAGTGCGC+TGG + chr6.2:84220994-84221013 None:intergenic 50.0%
GCCGCATGGAATTGATTGTC+AGG - chr6.2:84221966-84221985 MS.gene05503:intron 50.0%
GTCATTGAGGGCGATGTTGT+TGG - chr6.2:84220745-84220764 MS.gene05503:intron 50.0%
TAACACCAATGTCGGCGTGT+CGG - chr6.2:84222227-84222246 MS.gene05503:intron 50.0%
TCATCTAGTTGCAGGAGGAC+TGG - chr6.2:84221717-84221736 MS.gene05503:intron 50.0%
TCCATCACTGAAGACAGCTG+AGG - chr6.2:84220962-84220981 MS.gene05503:intron 50.0%
TCCCGTTCTGTTCCTTGTTG+TGG - chr6.2:84219871-84219890 MS.gene05503:CDS 50.0%
TCCTCAGCTGTCTTCAGTGA+TGG + chr6.2:84220966-84220985 None:intergenic 50.0%
! TGTCAGTCTTGGGTTGTTGC+TGG - chr6.2:84219765-84219784 MS.gene05503:CDS 50.0%
! TTGGGAGAGGAGCATATTCC+AGG - chr6.2:84221020-84221039 MS.gene05503:intron 50.0%
!! CGTGCTGCAGCTCCTTATTT+TGG - chr6.2:84221213-84221232 MS.gene05503:intron 50.0%
!! CTAAAGTGCCGGTGCTACAT+AGG + chr6.2:84222133-84222152 None:intergenic 50.0%
!! TAGATGGGCAGAAGCACCTA+TGG - chr6.2:84221647-84221666 MS.gene05503:intron 50.0%
AAGAGGAAGCAGGAATCCCC+AGG - chr6.2:84222010-84222029 MS.gene05503:intron 55.0%
CGAGCTGACCTATGTAGCAC+CGG - chr6.2:84222122-84222141 MS.gene05503:intron 55.0%
GAGGAAAGAACCAGCGCACT+TGG - chr6.2:84220981-84221000 MS.gene05503:intron 55.0%
TTGCTACTGTTGCAGCCGCA+TGG - chr6.2:84221952-84221971 MS.gene05503:intron 55.0%
AGACACCGACACGCCGACAT+TGG + chr6.2:84222235-84222254 None:intergenic 60.0%
!! AGTGGTGGGAGTGTCCGACA+AGG - chr6.2:84219829-84219848 MS.gene05503:CDS 60.0%
!! GTGGGAGTGTCCGACAAGGT+TGG - chr6.2:84219833-84219852 MS.gene05503:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84219723 84222787 84219723 ID=MS.gene05503
chr6.2 mRNA 84219723 84222787 84219723 ID=MS.gene05503.t1;Parent=MS.gene05503
chr6.2 exon 84222780 84222787 84222780 ID=MS.gene05503.t1.exon1;Parent=MS.gene05503.t1
chr6.2 CDS 84222780 84222787 84222780 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84222580 84222679 84222580 ID=MS.gene05503.t1.exon2;Parent=MS.gene05503.t1
chr6.2 CDS 84222580 84222679 84222580 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84221728 84221792 84221728 ID=MS.gene05503.t1.exon3;Parent=MS.gene05503.t1
chr6.2 CDS 84221728 84221792 84221728 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84221455 84221632 84221455 ID=MS.gene05503.t1.exon4;Parent=MS.gene05503.t1
chr6.2 CDS 84221455 84221632 84221455 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84221268 84221348 84221268 ID=MS.gene05503.t1.exon5;Parent=MS.gene05503.t1
chr6.2 CDS 84221268 84221348 84221268 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84220772 84220897 84220772 ID=MS.gene05503.t1.exon6;Parent=MS.gene05503.t1
chr6.2 CDS 84220772 84220897 84220772 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84220464 84220543 84220464 ID=MS.gene05503.t1.exon7;Parent=MS.gene05503.t1
chr6.2 CDS 84220464 84220543 84220464 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84219995 84220110 84219995 ID=MS.gene05503.t1.exon8;Parent=MS.gene05503.t1
chr6.2 CDS 84219995 84220110 84219995 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
chr6.2 exon 84219723 84219895 84219723 ID=MS.gene05503.t1.exon9;Parent=MS.gene05503.t1
chr6.2 CDS 84219723 84219895 84219723 ID=cds.MS.gene05503.t1;Parent=MS.gene05503.t1
Gene Sequence

>MS.gene05503

ATGTGTAGGTTTTGCAGAGTGGGAGTAGTATTTTACTGTTTTTGTCAGTCTTGGGTTGTTGCTGGTTCTGTTTCTGTGTAGTTCCAGTTTGAGTTGGATTGCTTCTAGTGGTGGGAGTGTCCGACAAGGTTGGAGTTGTCTTTCACTCTCCCGTTCTGTTCCTTGTTGTGGTTGGACATCTACATCGTCTAGTTTTCTTGTCGGCAGTGTTGGTGTTTCTAATGCAGATTCGTTTCGGCTCTCTTGACAGCAGTTTTATTGGCTGTCAGCAACTTTGTGGCATGTTCATTTCATACCTATCTATTTTTCGTTTAGCTCATAGGAGTTATTTATCATTTGATGGCTTGTTGTTTGTAGCAAAATGCTTTTTTATATAGTTCCGGTGTATTGGACTATTGGCCGTTTCTATCAGGGAGTTTTTTTAGCACATTGGTGAACTCTTTTTCGCAAGTCTCGTTACTTTGTGGTTTGTTTATAGCTTTGTTGCTTGATCTTTCCGTTGCCTTTTAAAAAATTATATATGTATACTATACCCTTGATAACCATAAGTTTAACATCATTCGCATTAACCATTGTGAGTCAAGTTTAGTATTAACCTTAACAGTAGATTCTGGGACAATTGAATCCGTGACTTAAGGCCGTATACAAGAATTATTTTGACAATCATATTTTCATTCATTGACAAATTAATGCTGTTATGTCATGGTTTATATATATATATATATATATATAGATGGTGCACATATTGGTGAAAAGTGGGGTGAAACCAACAAACGGATTTTCACAAAATATGTGGTCGTAGACTACGTTAATGTTTATCGAGTTTAAGTATTTGTAAATTGCTCAATTTCATAAATGTAACTGTTTCGTTGTATTCTTACTTTGCCAAGATTTTTTGGGTACATATATACAAATTGAACTGTCAGAGAAGCCTGCGCATGTAAAGTTAATTTTCCTTGTAAATAAAGTGTTATTGATTTTGAAATTTCTTGTAGGACAAACTATCGGAATTTCTTCCATTTGTCATTGAGGGCGATGTTGTTGGATTCATTCACAACGTGTAAAATTTACTCCTTCTCTTCATTTTTCTTTTACGATGATTGTGTCATATCCTGTTTTGTTATTCATGAATGGTTAAACTCTGAAACTGTTCAGGTTTGTTGAGCATTTGAGAGGCTTTAACGACGTGTTTGTTTTTCCCAATGATGGAAGCCCCTTTGATAACTGTGTTTCATTGCATCCATCACTGAAGACAGCTGAGGAAAGAACCAGCGCACTTGGCTATGTAATCAAGCATTTGGGAGAGGAGCATATTCCAGGTATACGGAACGAGGTATTAGTTATGATGAGTTTAGAATATGTTAGATTCCATCATTCTCTTTCATTGAATGATTTTCTAACACTTACCTAACCTACATTTCTTGTCTGTGTTTTACCAGCTATACCCTGTGAAGTCCTCATTTGACAAACCCGTTTTCTTTTCATTAGAACGTGCTGCAGCTCCTTATTTTGGCATAAAGGTACAAGAAAGAATACGCTGATACTTAATTACCAAACTAAATTTATAGTATGTACTGCAAACATTTGAAATCATATACTCAGCTGTTTTACCGTTATCTCTGTCCAAGTTTAGCAATGCTATCCAAGTTCAGACCTTTTTTTTAGCAGCTATATAAGTTCAGACTGTTATTTCTACTCTTCATTAGCAGATTCAACTGCAATTAATCCAATTACCTCTCATTACATGTCTTCTATTTTGAAGATTATTTGATAACTGCACTCTATTCGTTTTACAACAGACTTTCTAATTGATAATCCAGATTGTATCCTAAAGCTCTTATCGGTTACAGTTGGTCATCTTTAATCTCTTTTATTCTCTTTGAAGCATAGGCTTATGGAGTCCATATGAGTGGCTATGTTGAGATAGATGGGCAGAAGCACCTATGGATAGCGAAGAGAAGTCACACGAAATCCACATATCCTGGAATGCTTGATCATCTAGTTGCAGGAGGACTGGTTTGTAGTCTCATCTGTATCTGTTTGCATTATAAGTTCAAAACTCACCCTTGACATGTTAAACATTTCTTTCTAAGACTTTGTTTCAGAACTGAACCGTGCTGATAATGTGTAACTGCTGAAAGGATGAAATTAATATCAACGGATTGGAACAGTTTGCTATTAAGTGTTTTCTTTAGGGTAATATGTATTATCATCCGGAGTTTGAGTTAATTGCTACTGTTGCAGCCGCATGGAATTGATTGTCAGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCAGGAATCCCCAGGTCCATCTCTATTAAGTAAGTTCGGAAATGGCACAACTTCATCCTTCTCCTCCTTTAGTGCACAAAATTTGATTTTTCTTCTGAGATGAACGAGCTGACCTATGTAGCACCGGCACTTTAGATTATAGACATGTCATGTGTCTGACACGCCACTGACACATGTGATTACATTCAACTATTTCAATTTTCTCAAATTAACACCAATGTCGGCGTGTCGGTGTCTGTGTCAGTAGATCATAGAGCTAACTGAACTTCTTTTGTGGCTATGCTCAACAAAATTTGTTTGCTTATTCAATATACCATAAATATCCAACCATTTGCTGAAATGAAAAATCCAGTTAAATGTCTCTTCATTGGTGTTCTTGCAGAGCTAAACCTGTTGGTGCTGTTTCATATATGGACATCGACGGGGATAGATACAAAAGGGATGTTCTATTCTGCTATGATTTGAAGCTTCCAGAAAGCTTTGTGCCGAAAAACGAAGGTGTGCCTTTTAAACTCATTCTCCAATTTTATTCTCCTCGTCTCCTTTCCAGTAGTGTCGTGATCAACCTTTGTAGTAACTTGTTACATTAAATAACAGATGGTGAAGTTGAAAGCTTCAAGTTAATCCCTGTTAAGCAAGTTGCAGAAATCATTCGCAAGACACAATTTTTCAAACCAAATTGTGCTGTCGTGATCATTGACTTCCTGTTTCGACACGGGTATTTCTTTCTTTGTCCACGTCATTTCATACATTTCTTACCCTACTTATGA
Protein sequence

>MS.gene05503.t1

MCSGGSVRQGWSCLSLSRSVPCCGWTSTSSSFLVGSDKLSEFLPFVIEGDVVGFIHNVFVEHLRGFNDVFVFPNDGSPFDNCVSLHPSLKTAEERTSALGYVIKHLGEEHIPGIRNELYPVKSSFDKPVFFSLERAAAPYFGIKAYGVHMSGYVEIDGQKHLWIAKRSHTKSTYPGMLDHLVAGGLPHGIDCQENVVKECEEEAGIPRSISIKAKPVGAVSYMDIDGDRYKRDVLFCYDLKLPESFVPKNEDGEVESFKLIPVKQVAEIIRKTQFFKPNCAVVIIDFLFRHGYFFLCPRHFIHFLPYL