AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05504

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05504.t1 MTR_6g086510 92.177 294 19 1 64 357 97 386 0.0 560
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05504.t1 AT5G19460 67.247 287 89 3 76 357 88 374 1.35e-133 386
MS.gene05504.t1 AT5G19470 63.380 284 98 3 76 357 86 365 5.44e-124 361
MS.gene05504.t1 AT5G19470 63.118 263 91 3 76 336 86 344 8.16e-114 336

Find 87 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGAAAATTATGGATATT+TGG 0.161860 6.2:-84232750 MS.gene05504:CDS
CGTGCTGCAGCTCCTTATTT+TGG 0.177594 6.2:-84234737 MS.gene05504:CDS
CTCTTTGAAGCATAGGCTTA+TGG 0.222290 6.2:-84234352 MS.gene05504:intron
CTCCTATTCTTAAGCTTCTT+AGG 0.225839 6.2:+84232723 None:intergenic
ATTTCTGCAACTTGCTTAAC+AGG 0.232793 6.2:+84233314 None:intergenic
TGTACCTTTATGCCAAAATA+AGG 0.246886 6.2:+84234725 None:intergenic
AGTTACAAGACTTGCGAAAA+AGG 0.309530 6.2:+84235623 None:intergenic
TACATAAGTCCTGAAAATTA+TGG 0.313397 6.2:-84232758 MS.gene05504:CDS
TGTTGGTGCTGTTTCATATA+TGG 0.322857 6.2:-84233549 MS.gene05504:CDS
TGGCTATGTAATCGAGCATT+TGG 0.324074 6.2:-84234949 MS.gene05504:CDS
CTTCTAATGGTGAGAGTGTC+GGG 0.330502 6.2:-84236100 None:intergenic
CCCAATGATGGAAGCCCCTT+TGG 0.334011 6.2:-84235029 MS.gene05504:CDS
ATGATCACGACAGCACAATT+TGG 0.337212 6.2:+84233266 None:intergenic
TGGTGCATGTTGCTATCTTT+TGG 0.370504 6.2:-84235660 MS.gene05504:CDS
TTGGGAGAGGAGCATATTCC+AGG 0.372454 6.2:-84234930 MS.gene05504:CDS
TCGCAAGTCTTGTAACTTTG+CGG 0.386472 6.2:-84235617 MS.gene05504:intron
ACCAAAGGGGCTTCCATCAT+TGG 0.391806 6.2:+84235028 None:intergenic
ATGCTTGATCATCTAGTTGC+AGG 0.394775 6.2:-84234241 MS.gene05504:CDS
GCTCTCTCATTCTGTTTCCT+TGG 0.399245 6.2:-84236057 MS.gene05504:CDS
AGAAATACCCGTGTCGAAAC+AGG 0.401405 6.2:+84233237 None:intergenic
AGTGGCTATGTTGAGATAGA+TGG 0.405918 6.2:-84234319 MS.gene05504:CDS
GTCATTGAGGGCGACGTTGT+TGG 0.409677 6.2:-84235214 MS.gene05504:CDS
TCCTCAGCTGTCTTCAGCAA+TGG 0.422425 6.2:+84234987 None:intergenic
GGCTATGTAATCGAGCATTT+GGG 0.440338 6.2:-84234948 MS.gene05504:CDS
CGTTCTAATGAAAAGAAAAC+GGG 0.450446 6.2:+84234758 None:intergenic
AGGAGCATATTCCAGGTATA+CGG 0.452411 6.2:-84234923 MS.gene05504:CDS
TTTCTTCCATTTGTCATTGA+GGG 0.455068 6.2:-84235226 MS.gene05504:CDS
CACACGAAATCCACATATCC+TGG 0.461613 6.2:-84234265 MS.gene05504:CDS
TCTCAACATAGCCACTCATA+TGG 0.469522 6.2:+84234326 None:intergenic
AGGTTTGTTGAGCATTTAAG+AGG 0.470542 6.2:-84235074 MS.gene05504:CDS
CCAAAGGGGCTTCCATCATT+GGG 0.472746 6.2:+84235029 None:intergenic
GCCGCATGGAATTGATTGTC+AGG 0.474919 6.2:-84233984 MS.gene05504:CDS
AAGGAATGTGAAGAGGAAGC+AGG 0.475425 6.2:-84233950 MS.gene05504:CDS
TCATCTAGTTGCAGGAGGAC+TGG 0.475914 6.2:-84234233 MS.gene05504:intron
AGAAGGGTTGGCAGCAGTGA+AGG 0.479679 6.2:-84235838 MS.gene05504:CDS
ACTAGATGATCAAGCATTCC+AGG 0.480283 6.2:+84234247 None:intergenic
GTGAGAGTGTCGGGGTGGGT+TGG 0.481887 6.2:-84236091 MS.gene05504:CDS
ACGTTCTAATGAAAAGAAAA+CGG 0.490303 6.2:+84234757 None:intergenic
ACGTCGCCCTCAATGACAAA+TGG 0.490482 6.2:+84235220 None:intergenic
CAGCGTAAGTTTATTGAGAA+GGG 0.495178 6.2:-84235854 MS.gene05504:CDS
TTGTCAAATGAGGACTTCAC+AGG 0.500036 6.2:+84234782 None:intergenic
AATGAAACACAGTGACCAAA+GGG 0.500047 6.2:+84235014 None:intergenic
TTTCATATATGGACATCGAC+GGG 0.501956 6.2:-84233538 MS.gene05504:CDS
TTTCTGATGCAGATTTGTCT+CGG 0.502406 6.2:-84235994 MS.gene05504:intron
TAGATGGGCAGAAGCACCTA+TGG 0.503368 6.2:-84234303 MS.gene05504:CDS
TTGTTGGATTCATTCACAAT+CGG 0.508086 6.2:-84235198 MS.gene05504:intron
CTCCTAAGAAGCTTAAGAAT+AGG 0.508472 6.2:-84232725 MS.gene05504:CDS
ATTTCTTCCATTTGTCATTG+AGG 0.509275 6.2:-84235227 MS.gene05504:CDS
AATACCTCGTTCCGTATACC+TGG 0.509788 6.2:+84234912 None:intergenic
ATATATGAAACAGCACCAAC+AGG 0.512369 6.2:+84233551 None:intergenic
GCTTCTAATGGTGAGAGTGT+CGG 0.513509 6.2:-84236101 None:intergenic
TTGTCAGGAAAATGTTGTAA+AGG 0.514029 6.2:-84233969 MS.gene05504:CDS
TCGACGGGGATAGATACAAA+AGG 0.523200 6.2:-84233523 MS.gene05504:CDS
ATCAAGCATTCCAGGATATG+TGG 0.524432 6.2:+84234255 None:intergenic
CCGAACTTACTTAATAGAGA+TGG 0.527571 6.2:+84233916 None:intergenic
TTGACTTCCTGTTTCGACAC+GGG 0.535466 6.2:-84233244 MS.gene05504:intron
TTGCTACTGTTGCAGCCGCA+TGG 0.541001 6.2:-84233998 MS.gene05504:intron
GCAGCGTAAGTTTATTGAGA+AGG 0.548870 6.2:-84235855 MS.gene05504:intron
TACTTAATAGAGATGGACCT+GGG 0.564877 6.2:+84233923 None:intergenic
GTAAGTTTATTGAGAAGGGT+TGG 0.566006 6.2:-84235850 MS.gene05504:CDS
GATTACATAGCCAAGCGCGC+TGG 0.567603 6.2:+84234959 None:intergenic
TCTTGCAGAGCTAAACCTGT+TGG 0.576211 6.2:-84233566 MS.gene05504:intron
AAGAGGAAGCAGGAATCCCC+AGG 0.577108 6.2:-84233940 MS.gene05504:CDS
CGACGGGGATAGATACAAAA+GGG 0.578922 6.2:-84233522 MS.gene05504:CDS
GAAAACGGGTTTGTCAAATG+AGG 0.582709 6.2:+84234772 None:intergenic
CAATGAAACACAGTGACCAA+AGG 0.586554 6.2:+84235013 None:intergenic
GACTTCTCTTCGCTATCCAT+AGG 0.590285 6.2:+84234287 None:intergenic
TTTCTGCAACTTGCTTAACA+GGG 0.595814 6.2:+84233315 None:intergenic
TGTAATCGAGCATTTGGGAG+AGG 0.600564 6.2:-84234943 MS.gene05504:CDS
TAATGGTGAGAGTGTCGGGG+TGG 0.604494 6.2:-84236096 MS.gene05504:CDS
AATGGTGAGAGTGTCGGGGT+GGG 0.607882 6.2:-84236095 MS.gene05504:CDS
TGTTGTAAAGGAATGTGAAG+AGG 0.609830 6.2:-84233957 MS.gene05504:CDS
GTTTCATATATGGACATCGA+CGG 0.610300 6.2:-84233539 MS.gene05504:CDS
ATTGACTTCCTGTTTCGACA+CGG 0.610821 6.2:-84233245 MS.gene05504:CDS
GTGGCTATGTTGAGATAGAT+GGG 0.621537 6.2:-84234318 MS.gene05504:CDS
GCTTATGGAGTCCATATGAG+TGG 0.651417 6.2:-84234337 MS.gene05504:CDS
TTACTTAATAGAGATGGACC+TGG 0.657192 6.2:+84233922 None:intergenic
CTTGATCATCTAGTTGCAGG+AGG 0.661487 6.2:-84234238 MS.gene05504:CDS
TCCTGACAATCAATTCCATG+CGG 0.664669 6.2:+84233983 None:intergenic
TTCTAATGGTGAGAGTGTCG+GGG 0.670548 6.2:-84236099 None:intergenic
TCCATTGCTGAAGACAGCTG+AGG 0.673124 6.2:-84234988 MS.gene05504:CDS
TGTCAAATGAGGACTTCACA+GGG 0.682552 6.2:+84234783 None:intergenic
TTCATATATGGACATCGACG+GGG 0.710863 6.2:-84233537 MS.gene05504:CDS
ACTTAATAGAGATGGACCTG+GGG 0.711401 6.2:+84233924 None:intergenic
CTATACGATGTAACACACCA+AGG 0.727979 6.2:+84236040 None:intergenic
TATTCCAGGTATACGGAACG+AGG 0.728323 6.2:-84234916 MS.gene05504:intron
ATGAAACACAGTGACCAAAG+GGG 0.740460 6.2:+84235015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATACTATAAATTTAGTT+TGG + chr6.2:84234133-84234152 None:intergenic 15.0%
!!! ACTTTTCATTAAGATTTTTT+TGG - chr6.2:84233445-84233464 MS.gene05504:intron 15.0%
!! AAACACATATTTCATAAGTA+GGG + chr6.2:84235627-84235646 None:intergenic 20.0%
!! AACAAGACAATCTATTTAAA+AGG + chr6.2:84233525-84233544 None:intergenic 20.0%
!! AAGGATGAAATTAATATCAA+CGG - chr6.2:84234717-84234736 MS.gene05504:intron 20.0%
!! ATCACAACATATAATCATTA+AGG + chr6.2:84236020-84236039 None:intergenic 20.0%
!! ATTCTAAACTTGATTCAAAA+TGG + chr6.2:84233331-84233350 None:intergenic 20.0%
!! GTTATTCATGAATATTTCTT+TGG - chr6.2:84233690-84233709 MS.gene05504:intron 20.0%
!! TAAGATTGGATTTAATTGAT+TGG - chr6.2:84232875-84232894 MS.gene05504:intron 20.0%
!! TATAAGGAAAAATGAAGAAA+GGG + chr6.2:84233645-84233664 None:intergenic 20.0%
!! TTATAAGGAAAAATGAAGAA+AGG + chr6.2:84233646-84233665 None:intergenic 20.0%
!! TTATATAGCTGCTAAAAAAA+AGG + chr6.2:84234235-84234254 None:intergenic 20.0%
!! TTGTTACATTAAATAACAGA+TGG - chr6.2:84235444-84235463 MS.gene05504:intron 20.0%
!!! AGTGTTAATATTTTGATGTT+GGG - chr6.2:84233103-84233122 MS.gene05504:intron 20.0%
!!! ATTAACCTCTAATAGATTTT+TGG - chr6.2:84233349-84233368 MS.gene05504:intron 20.0%
!!! TAGTGTTAATATTTTGATGT+TGG - chr6.2:84233102-84233121 MS.gene05504:intron 20.0%
!!! TTTTCAAATACTTAAAGTCA+TGG + chr6.2:84233385-84233404 None:intergenic 20.0%
! AAGAAATGTTTAACATGTCA+AGG + chr6.2:84234646-84234665 None:intergenic 25.0%
! AATGTAACAAGTTACTACAA+AGG + chr6.2:84235434-84235453 None:intergenic 25.0%
! AATTGGAGAATGAGTTTAAA+AGG + chr6.2:84235372-84235391 None:intergenic 25.0%
! ACGTTCTAATGAAAAGAAAA+CGG + chr6.2:84234052-84234071 None:intergenic 25.0%
! AGAAATGTTTAACATGTCAA+GGG + chr6.2:84234645-84234664 None:intergenic 25.0%
! AGGAGTTATTTATCATTTGA+TGG - chr6.2:84233077-84233096 MS.gene05504:intron 25.0%
! ATTGGATTTAATTGATTGGA+CGG - chr6.2:84232879-84232898 MS.gene05504:intron 25.0%
! ATTGTCCAAAAATCTATTAG+AGG + chr6.2:84233357-84233376 None:intergenic 25.0%
! CAAACACATATTTCATAAGT+AGG + chr6.2:84235628-84235647 None:intergenic 25.0%
! GTTAATGTGAATGATGTTAA+GGG + chr6.2:84233309-84233328 None:intergenic 25.0%
! TACATAAGTCCTGAAAATTA+TGG - chr6.2:84236048-84236067 MS.gene05504:CDS 25.0%
! TCCTGAAAATTATGGATATT+TGG - chr6.2:84236056-84236075 MS.gene05504:CDS 25.0%
! TGAAATTAATATCAACGGAT+TGG - chr6.2:84234722-84234741 MS.gene05504:intron 25.0%
!! GCTATTAAGTGTTTTCTTTA+GGG - chr6.2:84234753-84234772 MS.gene05504:CDS 25.0%
!! TCCAAATATCCATAATTTTC+AGG + chr6.2:84236060-84236079 None:intergenic 25.0%
!! TGCTATTAAGTGTTTTCTTT+AGG - chr6.2:84234752-84234771 MS.gene05504:CDS 25.0%
!!! AGGCTTTATGAATGTATTTT+AGG - chr6.2:84235914-84235933 MS.gene05504:intron 25.0%
!!! ATAATGGAATTGGATTTTCA+AGG - chr6.2:84235894-84235913 MS.gene05504:intron 25.0%
!!! CATTTGTTTTCTTATTCTTG+GGG - chr6.2:84235982-84236001 MS.gene05504:intron 25.0%
!!! GCATTTGTTTTCTTATTCTT+GGG - chr6.2:84235981-84236000 MS.gene05504:intron 25.0%
!!! GTGTTAATATTTTGATGTTG+GGG - chr6.2:84233104-84233123 MS.gene05504:intron 25.0%
!!! GTTAAACTTTGAAATTGTTC+AGG - chr6.2:84233712-84233731 MS.gene05504:intron 25.0%
!!! TGCATTTGTTTTCTTATTCT+TGG - chr6.2:84235980-84235999 MS.gene05504:intron 25.0%
!!! TTACTCTTTTTTTTGCTGAT+GGG - chr6.2:84232929-84232948 MS.gene05504:intron 25.0%
!!! TTTTATTCTCTTTGAAGCAT+AGG - chr6.2:84234447-84234466 MS.gene05504:intron 25.0%
AAAACACAGACAAGAAATGT+AGG + chr6.2:84233993-84234012 None:intergenic 30.0%
AAAATTAACTTTACACCTGC+AGG + chr6.2:84233502-84233521 None:intergenic 30.0%
AAGAAATGTATGAAATGACG+TGG + chr6.2:84235603-84235622 None:intergenic 30.0%
AATAGAAGACATGTAATGAG+AGG + chr6.2:84234315-84234334 None:intergenic 30.0%
AATCCAATTCCATTATGACA+CGG + chr6.2:84235890-84235909 None:intergenic 30.0%
AATGTTGTCAATTGTCAAAG+CGG - chr6.2:84235751-84235770 MS.gene05504:intron 30.0%
AGAAGAAAAATGTGCACTAA+AGG + chr6.2:84234942-84234961 None:intergenic 30.0%
AGCAAATGGTTGGATATTTA+TGG + chr6.2:84235182-84235201 None:intergenic 30.0%
ATTTCTTCCATTTGTCATTG+AGG - chr6.2:84233579-84233598 MS.gene05504:intron 30.0%
CATTCAATGAATGAGAATGA+TGG + chr6.2:84233950-84233969 None:intergenic 30.0%
CCATCTCTATTAAGTAAGTT+CGG - chr6.2:84234890-84234909 MS.gene05504:intron 30.0%
CGTTCTAATGAAAAGAAAAC+GGG + chr6.2:84234051-84234070 None:intergenic 30.0%
CTAAAAAAAAGGTCTGAACT+TGG + chr6.2:84234224-84234243 None:intergenic 30.0%
GGGTAATATGTATTATCATC+CGG - chr6.2:84234773-84234792 MS.gene05504:CDS 30.0%
GGTTAATGTGAATGATGTTA+AGG + chr6.2:84233310-84233329 None:intergenic 30.0%
TATGACACAAGCATCTTATA+AGG + chr6.2:84233661-84233680 None:intergenic 30.0%
TCTCAAATTAACACCAATGT+CGG - chr6.2:84235067-84235086 MS.gene05504:CDS 30.0%
TGTACCTTTATGCCAAAATA+AGG + chr6.2:84234084-84234103 None:intergenic 30.0%
TTATACTGAATAGCGTATCA+TGG + chr6.2:84235731-84235750 None:intergenic 30.0%
TTGATTTCGAAATTGCTTGT+AGG - chr6.2:84233543-84233562 MS.gene05504:CDS 30.0%
TTGGATTTAATTGATTGGAC+GGG - chr6.2:84232880-84232899 MS.gene05504:intron 30.0%
TTGTATCCTAAAGCTCTTAT+CGG - chr6.2:84234400-84234419 MS.gene05504:intron 30.0%
TTGTCAGGAAAATGTTGTAA+AGG - chr6.2:84234837-84234856 MS.gene05504:intron 30.0%
TTGTTGGATTCATTCACAAT+CGG - chr6.2:84233608-84233627 MS.gene05504:intron 30.0%
TTTCTTCCATTTGTCATTGA+GGG - chr6.2:84233580-84233599 MS.gene05504:intron 30.0%
! ACATCGTATAGTTTTCTTGT+CGG - chr6.2:84232778-84232797 MS.gene05504:intron 30.0%
! GGATTTTTCATTTCAGCAAA+TGG + chr6.2:84235196-84235215 None:intergenic 30.0%
! TTCTCAGTGGTGTTAAATAA+CGG - chr6.2:84235658-84235677 MS.gene05504:CDS 30.0%
! TTTTCATTTCAGCAAATGGT+TGG + chr6.2:84235192-84235211 None:intergenic 30.0%
!!! GAAATTGGTTTTGTTTAGGA+TGG - chr6.2:84233126-84233145 MS.gene05504:intron 30.0%
!!! GTTACTCTTTTTTTTGCTGA+TGG - chr6.2:84232928-84232947 MS.gene05504:intron 30.0%
!!! TATTTTGATGTTGGGGAAAT+TGG - chr6.2:84233111-84233130 MS.gene05504:intron 30.0%
AATGAAACACAGTGACCAAA+GGG + chr6.2:84233795-84233814 None:intergenic 35.0%
AATGTAATCACATGTGTCAG+TGG + chr6.2:84235032-84235051 None:intergenic 35.0%
ACAGACAAGAAATGTAGGTT+AGG + chr6.2:84233988-84234007 None:intergenic 35.0%
AGAAAAATGTGCACTAAAGG+AGG + chr6.2:84234939-84234958 None:intergenic 35.0%
AGTGTTGTCAATCGTAGATA+GGG + chr6.2:84235828-84235847 None:intergenic 35.0%
AGTTACAAGACTTGCGAAAA+AGG + chr6.2:84233186-84233205 None:intergenic 35.0%
ATATATGAAACAGCACCAAC+AGG + chr6.2:84235258-84235277 None:intergenic 35.0%
CAGCGTAAGTTTATTGAGAA+GGG - chr6.2:84232952-84232971 MS.gene05504:intron 35.0%
CCAATGAAGAGACATTTAAC+TGG + chr6.2:84235217-84235236 None:intergenic 35.0%
CCAGTTAAATGTCTCTTCAT+TGG - chr6.2:84235214-84235233 MS.gene05504:CDS 35.0%
CCGAACTTACTTAATAGAGA+TGG + chr6.2:84234893-84234912 None:intergenic 35.0%
CTAAACTTGGACAGAGATAA+CGG + chr6.2:84234192-84234211 None:intergenic 35.0%
CTATTAAGTAAGTTCGGAAC+TGG - chr6.2:84234896-84234915 MS.gene05504:intron 35.0%
CTCCTAAGAAGCTTAAGAAT+AGG - chr6.2:84236081-84236100 MS.gene05504:CDS 35.0%
CTCCTATTCTTAAGCTTCTT+AGG + chr6.2:84236086-84236105 None:intergenic 35.0%
GACATGTAATGAGAGGTAAT+TGG + chr6.2:84234308-84234327 None:intergenic 35.0%
GATAATGTGTAACTGCTGAA+AGG - chr6.2:84234698-84234717 MS.gene05504:intron 35.0%
GTAAGTTTATTGAGAAGGGT+TGG - chr6.2:84232956-84232975 MS.gene05504:intron 35.0%
GTAGCAATTAACTCAAACTC+CGG + chr6.2:84234795-84234814 None:intergenic 35.0%
GTTTCATATATGGACATCGA+CGG - chr6.2:84235267-84235286 MS.gene05504:intron 35.0%
TACGAGTTTCCAGAAAAGTA+CGG + chr6.2:84235858-84235877 None:intergenic 35.0%
TACTTAATAGAGATGGACCT+GGG + chr6.2:84234886-84234905 None:intergenic 35.0%
TGGATTTAATTGATTGGACG+GGG - chr6.2:84232881-84232900 MS.gene05504:intron 35.0%
TGTTGTAAAGGAATGTGAAG+AGG - chr6.2:84234849-84234868 MS.gene05504:intron 35.0%
TTACTTAATAGAGATGGACC+TGG + chr6.2:84234887-84234906 None:intergenic 35.0%
TTGGATAGCATTGCTAAACT+TGG + chr6.2:84234205-84234224 None:intergenic 35.0%
TTTCATATATGGACATCGAC+GGG - chr6.2:84235268-84235287 MS.gene05504:intron 35.0%
TTTCTGATGCAGATTTGTCT+CGG - chr6.2:84232812-84232831 MS.gene05504:intron 35.0%
TTTCTTTGACCGTGTCATAA+TGG - chr6.2:84235878-84235897 MS.gene05504:intron 35.0%
! AGCAGTTTGATCCTTTGTTT+AGG - chr6.2:84232849-84232868 MS.gene05504:intron 35.0%
! AGCTAACTGAACTTCTTTTG+TGG - chr6.2:84235120-84235139 MS.gene05504:intron 35.0%
! ATTTCTGCAACTTGCTTAAC+AGG + chr6.2:84235495-84235514 None:intergenic 35.0%
! TTTCTGCAACTTGCTTAACA+GGG + chr6.2:84235494-84235513 None:intergenic 35.0%
!! AAGAGCTTTAGGATACAATC+TGG + chr6.2:84234398-84234417 None:intergenic 35.0%
!! AGGTTTGTTGAGCATTTAAG+AGG - chr6.2:84233732-84233751 MS.gene05504:intron 35.0%
!! TGTTGGTGCTGTTTCATATA+TGG - chr6.2:84235257-84235276 MS.gene05504:intron 35.0%
!!! AGCTCCTTATTTTGGCATAA+AGG - chr6.2:84234077-84234096 MS.gene05504:intron 35.0%
!!! CGAGCTAAGAGCATTTTTTT+TGG - chr6.2:84233012-84233031 MS.gene05504:intron 35.0%
!!! GTTTTTTTCGCTTAGCTCAT+AGG - chr6.2:84233057-84233076 MS.gene05504:intron 35.0%
!!! TGGGGAAATTGGTTTTGTTT+AGG - chr6.2:84233122-84233141 MS.gene05504:intron 35.0%
AAAAAGAGTAACCATGCGCA+AGG + chr6.2:84232920-84232939 None:intergenic 40.0%
ACTAGATGATCAAGCATTCC+AGG + chr6.2:84234562-84234581 None:intergenic 40.0%
ACTTAATAGAGATGGACCTG+GGG + chr6.2:84234885-84234904 None:intergenic 40.0%
AGTGGCTATGTTGAGATAGA+TGG - chr6.2:84234487-84234506 MS.gene05504:intron 40.0%
ATAGCGTATCATGGAACAAC+AGG + chr6.2:84235722-84235741 None:intergenic 40.0%
ATCAAGCATTCCAGGATATG+TGG + chr6.2:84234554-84234573 None:intergenic 40.0%
ATGAAACACAGTGACCAAAG+GGG + chr6.2:84233794-84233813 None:intergenic 40.0%
ATGATCACGACAGCACAATT+TGG + chr6.2:84235543-84235562 None:intergenic 40.0%
ATGCTTGATCATCTAGTTGC+AGG - chr6.2:84234565-84234584 MS.gene05504:intron 40.0%
CAATCTTAGCGCCTAAACAA+AGG + chr6.2:84232863-84232882 None:intergenic 40.0%
CAATGAAACACAGTGACCAA+AGG + chr6.2:84233796-84233815 None:intergenic 40.0%
CAGTGTTGTCAATCGTAGAT+AGG + chr6.2:84235829-84235848 None:intergenic 40.0%
CTATACGATGTAACACACCA+AGG + chr6.2:84232769-84232788 None:intergenic 40.0%
CTATCTACGATTGACAACAC+TGG - chr6.2:84235827-84235846 MS.gene05504:CDS 40.0%
CTGTAACCGATAAGAGCTTT+AGG + chr6.2:84234409-84234428 None:intergenic 40.0%
GAAGGAAGTTCCAGATTGTA+AGG - chr6.2:84232986-84233005 MS.gene05504:intron 40.0%
GCAGCGTAAGTTTATTGAGA+AGG - chr6.2:84232951-84232970 MS.gene05504:intron 40.0%
GCAGTTACACATTATCAGCA+CGG + chr6.2:84234694-84234713 None:intergenic 40.0%
GCTAAGCGAAAAAAACAGCT+AGG + chr6.2:84233053-84233072 None:intergenic 40.0%
GGAGACGAGGAGAATAAAAT+TGG + chr6.2:84235389-84235408 None:intergenic 40.0%
GGCTATGTAATCGAGCATTT+GGG - chr6.2:84233858-84233877 MS.gene05504:intron 40.0%
GTGGCTATGTTGAGATAGAT+GGG - chr6.2:84234488-84234507 MS.gene05504:intron 40.0%
GTGTTGTCAATCGTAGATAG+GGG + chr6.2:84235827-84235846 None:intergenic 40.0%
TAGCGTATCATGGAACAACA+GGG + chr6.2:84235721-84235740 None:intergenic 40.0%
TCCTGACAATCAATTCCATG+CGG + chr6.2:84234826-84234845 None:intergenic 40.0%
TCTCAACATAGCCACTCATA+TGG + chr6.2:84234483-84234502 None:intergenic 40.0%
TGGCTATGTAATCGAGCATT+TGG - chr6.2:84233857-84233876 MS.gene05504:intron 40.0%
TGTCAAATGAGGACTTCACA+GGG + chr6.2:84234026-84234045 None:intergenic 40.0%
TTCATATATGGACATCGACG+GGG - chr6.2:84235269-84235288 MS.gene05504:intron 40.0%
TTGTCAAATGAGGACTTCAC+AGG + chr6.2:84234027-84234046 None:intergenic 40.0%
! AAGCTCTTATCGGTTACAGT+TGG - chr6.2:84234410-84234429 MS.gene05504:intron 40.0%
! AGGAGCATATTCCAGGTATA+CGG - chr6.2:84233883-84233902 MS.gene05504:intron 40.0%
! ATTGACTTCCTGTTTCGACA+CGG - chr6.2:84235561-84235580 MS.gene05504:intron 40.0%
! CTAAAGTGTCAGTGCTACAT+AGG + chr6.2:84234981-84235000 None:intergenic 40.0%
! CTTTGTTTAGGCGCTAAGAT+TGG - chr6.2:84232861-84232880 MS.gene05504:intron 40.0%
! GAAAACGGGTTTGTCAAATG+AGG + chr6.2:84234037-84234056 None:intergenic 40.0%
! TCGCAAGTCTTGTAACTTTG+CGG - chr6.2:84233189-84233208 MS.gene05504:intron 40.0%
! TGACCGTGTCATAATGGAAT+TGG - chr6.2:84235884-84235903 MS.gene05504:intron 40.0%
! TGGTGCATGTTGCTATCTTT+TGG - chr6.2:84233146-84233165 MS.gene05504:intron 40.0%
!! AAAGGCACACCTTCGTTTTT+CGG + chr6.2:84235354-84235373 None:intergenic 40.0%
!! CTCTTTGAAGCATAGGCTTA+TGG - chr6.2:84234454-84234473 MS.gene05504:intron 40.0%
!! GTGTTCGTTTTTCCCAATGA+TGG - chr6.2:84233765-84233784 MS.gene05504:intron 40.0%
!! TTTTTCGGCACAAAGCTTTC+TGG + chr6.2:84235339-84235358 None:intergenic 40.0%
!!! TTTGCTTTTTTCCTTGCGCA+TGG - chr6.2:84232906-84232925 MS.gene05504:intron 40.0%
AAGGAATGTGAAGAGGAAGC+AGG - chr6.2:84234856-84234875 MS.gene05504:intron 45.0%
AATACCTCGTTCCGTATACC+TGG + chr6.2:84233897-84233916 None:intergenic 45.0%
AGAAATACCCGTGTCGAAAC+AGG + chr6.2:84235572-84235591 None:intergenic 45.0%
AGATCAACAACCCAAGCACA+AGG + chr6.2:84233254-84233273 None:intergenic 45.0%
ATGTGCACTAAAGGAGGAGA+AGG + chr6.2:84234933-84234952 None:intergenic 45.0%
CACACGAAATCCACATATCC+TGG - chr6.2:84234541-84234560 MS.gene05504:intron 45.0%
CGACGGGGATAGATACAAAA+GGG - chr6.2:84235284-84235303 MS.gene05504:intron 45.0%
CTAAAGGAGGAGAAGGATGA+AGG + chr6.2:84234926-84234945 None:intergenic 45.0%
CTTGATCATCTAGTTGCAGG+AGG - chr6.2:84234568-84234587 MS.gene05504:intron 45.0%
GACTTCTCTTCGCTATCCAT+AGG + chr6.2:84234522-84234541 None:intergenic 45.0%
GCTCTCTCATTCTGTTTCCT+TGG - chr6.2:84232749-84232768 MS.gene05504:CDS 45.0%
GCTTATGGAGTCCATATGAG+TGG - chr6.2:84234469-84234488 MS.gene05504:intron 45.0%
TAGCTCGCATCCTTACAATC+TGG + chr6.2:84232999-84233018 None:intergenic 45.0%
TATTCCAGGTATACGGAACG+AGG - chr6.2:84233890-84233909 MS.gene05504:intron 45.0%
TCGACGGGGATAGATACAAA+AGG - chr6.2:84235283-84235302 MS.gene05504:intron 45.0%
TCTTGCAGAGCTAAACCTGT+TGG - chr6.2:84235240-84235259 MS.gene05504:CDS 45.0%
TGATCACGACACTACTGGAA+AGG + chr6.2:84235410-84235429 None:intergenic 45.0%
TGTAATCGAGCATTTGGGAG+AGG - chr6.2:84233863-84233882 MS.gene05504:intron 45.0%
TTGACTTCCTGTTTCGACAC+GGG - chr6.2:84235562-84235581 MS.gene05504:intron 45.0%
! AAGGTTGATCACGACACTAC+TGG + chr6.2:84235415-84235434 None:intergenic 45.0%
! AGCTTTGTGCCGAAAAACGA+AGG - chr6.2:84235342-84235361 MS.gene05504:intron 45.0%
! AGTTTTCTTGTCGGCAGTGT+TGG - chr6.2:84232787-84232806 MS.gene05504:intron 45.0%
! TAACACCACTGAGAAGCACA+TGG + chr6.2:84235653-84235672 None:intergenic 45.0%
ACACTACTGGAAAGGAGACG+AGG + chr6.2:84235402-84235421 None:intergenic 50.0%
ACCAAAGGGGCTTCCATCAT+TGG + chr6.2:84233781-84233800 None:intergenic 50.0%
ACGTCGCCCTCAATGACAAA+TGG + chr6.2:84233589-84233608 None:intergenic 50.0%
AGGACTTCACAGGGTATAGC+TGG + chr6.2:84234017-84234036 None:intergenic 50.0%
CCAAAGGGGCTTCCATCATT+GGG + chr6.2:84233780-84233799 None:intergenic 50.0%
GCCGCATGGAATTGATTGTC+AGG - chr6.2:84234822-84234841 MS.gene05504:intron 50.0%
TAACACCAATGTCGGCGTGT+CGG - chr6.2:84235075-84235094 MS.gene05504:CDS 50.0%
TCATCTAGTTGCAGGAGGAC+TGG - chr6.2:84234573-84234592 MS.gene05504:intron 50.0%
TCCATTGCTGAAGACAGCTG+AGG - chr6.2:84233818-84233837 MS.gene05504:intron 50.0%
TCCTCAGCTGTCTTCAGCAA+TGG + chr6.2:84233822-84233841 None:intergenic 50.0%
TTGAGCCATGTGCTTCTCAG+TGG - chr6.2:84235645-84235664 MS.gene05504:CDS 50.0%
! TTGGGAGAGGAGCATATTCC+AGG - chr6.2:84233876-84233895 MS.gene05504:intron 50.0%
!! CGTGCTGCAGCTCCTTATTT+TGG - chr6.2:84234069-84234088 MS.gene05504:intron 50.0%
!! TAGATGGGCAGAAGCACCTA+TGG - chr6.2:84234503-84234522 MS.gene05504:intron 50.0%
!!! CTGGTGCTACCGTACTTTTC+TGG - chr6.2:84235846-84235865 MS.gene05504:CDS 50.0%
AAGAGGAAGCAGGAATCCCC+AGG - chr6.2:84234866-84234885 MS.gene05504:intron 55.0%
ACCCAAGCACAAGGCATGCA+CGG + chr6.2:84233245-84233264 None:intergenic 55.0%
GAACTCTCAGAGAAGCCTGC+AGG - chr6.2:84233484-84233503 MS.gene05504:CDS 55.0%
GAGGAAAAAACCAGCGCGCT+TGG - chr6.2:84233837-84233856 MS.gene05504:intron 55.0%
GATTACATAGCCAAGCGCGC+TGG + chr6.2:84233850-84233869 None:intergenic 55.0%
GTCATTGAGGGCGACGTTGT+TGG - chr6.2:84233592-84233611 MS.gene05504:intron 55.0%
TTGCTACTGTTGCAGCCGCA+TGG - chr6.2:84234808-84234827 MS.gene05504:intron 55.0%
! AGAAGGGTTGGCAGCAGTGA+AGG - chr6.2:84232968-84232987 MS.gene05504:intron 55.0%
! CCCAATGATGGAAGCCCCTT+TGG - chr6.2:84233777-84233796 MS.gene05504:intron 55.0%
AGACACCGACACGCCGACAT+TGG + chr6.2:84235083-84235102 None:intergenic 60.0%
CCCAAGCACAAGGCATGCAC+GGG + chr6.2:84233244-84233263 None:intergenic 60.0%
CCCGTGCATGCCTTGTGCTT+GGG - chr6.2:84233241-84233260 MS.gene05504:intron 60.0%
TCCCGTGCATGCCTTGTGCT+TGG - chr6.2:84233240-84233259 MS.gene05504:intron 60.0%
!! GTGAGAGTGTCGGGGTGGGT+TGG - chr6.2:84232715-84232734 MS.gene05504:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84232712 84236116 84232712 ID=MS.gene05504
chr6.2 mRNA 84232712 84236116 84232712 ID=MS.gene05504.t1;Parent=MS.gene05504
chr6.2 exon 84235995 84236116 84235995 ID=MS.gene05504.t1.exon1;Parent=MS.gene05504.t1
chr6.2 CDS 84235995 84236116 84235995 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84235826 84235873 84235826 ID=MS.gene05504.t1.exon2;Parent=MS.gene05504.t1
chr6.2 CDS 84235826 84235873 84235826 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84235618 84235684 84235618 ID=MS.gene05504.t1.exon3;Parent=MS.gene05504.t1
chr6.2 CDS 84235618 84235684 84235618 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84235199 84235263 84235199 ID=MS.gene05504.t1.exon4;Parent=MS.gene05504.t1
chr6.2 CDS 84235199 84235263 84235199 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84234917 84235094 84234917 ID=MS.gene05504.t1.exon5;Parent=MS.gene05504.t1
chr6.2 CDS 84234917 84235094 84234917 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84234730 84234810 84234730 ID=MS.gene05504.t1.exon6;Parent=MS.gene05504.t1
chr6.2 CDS 84234730 84234810 84234730 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84234234 84234359 84234234 ID=MS.gene05504.t1.exon7;Parent=MS.gene05504.t1
chr6.2 CDS 84234234 84234359 84234234 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84233926 84234005 84233926 ID=MS.gene05504.t1.exon8;Parent=MS.gene05504.t1
chr6.2 CDS 84233926 84234005 84233926 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84233465 84233580 84233465 ID=MS.gene05504.t1.exon9;Parent=MS.gene05504.t1
chr6.2 CDS 84233465 84233580 84233465 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84233245 84233365 84233245 ID=MS.gene05504.t1.exon10;Parent=MS.gene05504.t1
chr6.2 CDS 84233245 84233365 84233245 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
chr6.2 exon 84232712 84232781 84232712 ID=MS.gene05504.t1.exon11;Parent=MS.gene05504.t1
chr6.2 CDS 84232712 84232781 84232712 ID=cds.MS.gene05504.t1;Parent=MS.gene05504.t1
Gene Sequence

>MS.gene05504

ATGGTGAGAGTGTCGGGGTGGGTTGGAGCTGTCTTTCGCTCTCTCATTCTGTTTCCTTGGTGTGTTACATCGTATAGTTTTCTTGTCGGCAGTGTTGGTGTTTCTGATGCAGATTTGTCTCGGTTCTCTTGACAGATAGCAGTTTGATCCTTTGTTTAGGCGCTAAGATTGGATTTAATTGATTGGACGGGGTATTTGCTTTTTTCCTTGCGCATGGTTACTCTTTTTTTTGCTGATGGGCAGCGTAAGTTTATTGAGAAGGGTTGGCAGCAGTGAAGGAAGTTCCAGATTGTAAGGATGCGAGCTAAGAGCATTTTTTTTGGCATGTTCATCTCGTGCCTAGCTGTTTTTTTCGCTTAGCTCATAGGAGTTATTTATCATTTGATGGCTTAGTGTTAATATTTTGATGTTGGGGAAATTGGTTTTGTTTAGGATGGTGCATGTTGCTATCTTTTGGCACGTTTGTGAACTCCTTTTTCGCAAGTCTTGTAACTTTGCGGTTTGTTTGTATCTTTGTTGCTTGATCTTTCCCGTGCATGCCTTGTGCTTGGGTTGTTGATCTTAATAAAATTGTCTTTTCAAAAAAGAATTGTACCCTTAACATCATTCACATTAACCATTTTGAATCAAGTTTAGAATTAACCTCTAATAGATTTTTGGACAATTGAAGCCATGACTTTAAGTATTTGAAAAATGCTCAATTTCATAAATGTAACTGTTTCTTTGTATTCTTACTTTTCATTAAGATTTTTTTGGTATATATATACAAATTGAACTCTCAGAGAAGCCTGCAGGTGTAAAGTTAATTTTCCTTTTAAATAGATTGTCTTGTTGATTTCGAAATTGCTTGTAGGACAAACAATCAGAATTTCTTCCATTTGTCATTGAGGGCGACGTTGTTGGATTCATTCACAATCGGTAAAATTTTCTCCCTTTCTTCATTTTTCCTTATAAGATGCTTGTGTCATATCATGTTTTGTTATTCATGAATATTTCTTTGGTTAAACTTTGAAATTGTTCAGGTTTGTTGAGCATTTAAGAGGCTTTAATGATGTGTTCGTTTTTCCCAATGATGGAAGCCCCTTTGGTCACTGTGTTTCATTGCATCCATTGCTGAAGACAGCTGAGGAAAAAACCAGCGCGCTTGGCTATGTAATCGAGCATTTGGGAGAGGAGCATATTCCAGGTATACGGAACGAGGTATTAGTTATGATGAGTTTAGAATATGTTAGATTCCATCATTCTCATTCATTGAATGATTTTCTAACACTTACCTAACCTACATTTCTTGTCTGTGTTTTACCAGCTATACCCTGTGAAGTCCTCATTTGACAAACCCGTTTTCTTTTCATTAGAACGTGCTGCAGCTCCTTATTTTGGCATAAAGGTACAAGAAAGAATACGCTGATACTTAATTACCAAACTAAATTTATAGTATGTACTGCAAACATTTGAAATCATATACTCAGCTGTTTTACCGTTATCTCTGTCCAAGTTTAGCAATGCTATCCAAGTTCAGACCTTTTTTTTAGCAGCTATATAAGTTCAGACTGTTATTTCTACTCTTCATTAGCAGATTCAACTGCAATTAATCCAATTACCTCTCATTACATGTCTTCTATTTTGAAGATTATTTGATAACTGCACTCTATTTGTTTTACAACAGACTTTCTAATTGATAATCCAGATTGTATCCTAAAGCTCTTATCGGTTACAGTTGGTCATCTTTAATCTCTTTTATTCTCTTTGAAGCATAGGCTTATGGAGTCCATATGAGTGGCTATGTTGAGATAGATGGGCAGAAGCACCTATGGATAGCGAAGAGAAGTCACACGAAATCCACATATCCTGGAATGCTTGATCATCTAGTTGCAGGAGGACTGGTTTGTAGTCTCATCTGTATCTGTTTGCATTATAAGTTCAAAACTCACCCTTGACATGTTAAACATTTCTTTCTAAGACTTTGTTTCAGAACTGAACCGTGCTGATAATGTGTAACTGCTGAAAGGATGAAATTAATATCAACGGATTGGAACAGTTTGCTATTAAGTGTTTTCTTTAGGGTAATATGTATTATCATCCGGAGTTTGAGTTAATTGCTACTGTTGCAGCCGCATGGAATTGATTGTCAGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCAGGAATCCCCAGGTCCATCTCTATTAAGTAAGTTCGGAACTGGCACACCTTCATCCTTCTCCTCCTTTAGTGCACATTTTTCTTCTGAGATGAACGAGCTGACCTATGTAGCACTGACACTTTAGATTATAGACATGTCATGTGTCTGACACGCCACTGACACATGTGATTACATTCAACTATTTCAATTTTCTCAAATTAACACCAATGTCGGCGTGTCGGTGTCTGTGTCAGTAGATCATAGAGCTAACTGAACTTCTTTTGTGGCTATGCTCAACAAAATATGTTTGCTTATTCAATATACCATAAATATCCAACCATTTGCTGAAATGAAAAATCCAGTTAAATGTCTCTTCATTGGTGTTCTTGCAGAGCTAAACCTGTTGGTGCTGTTTCATATATGGACATCGACGGGGATAGATACAAAAGGGATGTTCTATTCTGCTATGATTTGAAGCTTCCAGAAAGCTTTGTGCCGAAAAACGAAGGTGTGCCTTTTAAACTCATTCTCCAATTTTATTCTCCTCGTCTCCTTTCCAGTAGTGTCGTGATCAACCTTTGTAGTAACTTGTTACATTAAATAACAGATGGTGAAGTTGAAAGCTTCAAGTTAATCCCTGTTAAGCAAGTTGCAGAAATCATTCGCAAGACACAATTTTTCAAACCAAATTGTGCTGTCGTGATCATTGACTTCCTGTTTCGACACGGGTATTTCTTTCTTTGTCCACGTCATTTCATACATTTCTTACCCTACTTATGAAATATGTGTTTGAGCCATGTGCTTCTCAGTGGTGTTAAATAACGGCAATCTAGCTCTATAGCATTGTAGAATTTGAACAAATCCCTGTTGTTCCATGATACGCTATTCAGTATAAAATGTTGTCAATTGTCAAAGCGGCTATAGCAACTATAACACTGTCGTGTAGCGTAATTTGAATAATACTTTTTCCCCTATCTACGATTGACAACACTGGTGCTACCGTACTTTTCTGGAAACTCGTATTTCTTTGACCGTGTCATAATGGAATTGGATTTTCAAGGCTTTATGAATGTATTTTAGGAAACGTATATTGCAATAGTACTTCAGCAAAAGTGAATTTCTTTTGCATTTGTTTTCTTATTCTTGGGGTGCAAAGTGAAACCTTAATGATTATATGTTGTGATATTGCAGATACATAAGTCCTGAAAATTATGGATATTTGGATCTCCTAAGAAGCTTAAGAATAGGAGATTGCTCATGA
Protein sequence

>MS.gene05504.t1

MVRVSGWVGAVFRSLILFPWCVTSYSFLVGSVGVSDADLSRVSLLRRVGSSEGSSRLMVHVAIFWHVCELLFRKSCNFADKQSEFLPFVIEGDVVGFIHNRFVEHLRGFNDVFVFPNDGSPFGHCVSLHPLLKTAEEKTSALGYVIEHLGEEHIPGIRNELYPVKSSFDKPVFFSLERAAAPYFGIKAYGVHMSGYVEIDGQKHLWIAKRSHTKSTYPGMLDHLVAGGLPHGIDCQENVVKECEEEAGIPRSISIKAKPVGAVSYMDIDGDRYKRDVLFCYDLKLPESFVPKNEDGEVESFKLIPVKQVAEIIRKTQFFKPNCAVVIIDFLFRHGYISPENYGYLDLLRSLRIGDCS