Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055398.t1 | RHN38739.1 | 46.7 | 471 | 96 | 5 | 4 | 319 | 986 | 1456 | 1.10E-84 | 323.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055398.t1 | B9FXV5 | 50.8 | 297 | 101 | 2 | 21 | 272 | 1162 | 1458 | 6.2e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055398.t1 | A0A072TMA4 | 46.7 | 471 | 96 | 5 | 4 | 319 | 995 | 1465 | 7.7e-85 | 323.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055398 | MS.gene35858 | 0.808963 | 2.39E-50 | -1.69E-46 |
| MS.gene055398 | MS.gene95616 | 0.821373 | 4.18E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055398.t1 | MTR_8g008680 | 69.577 | 355 | 41 | 7 | 4 | 296 | 986 | 1335 | 9.86e-153 | 465 |
| MS.gene055398.t1 | MTR_8g008680 | 79.167 | 48 | 10 | 0 | 272 | 319 | 1409 | 1456 | 1.90e-16 | 80.9 |
| MS.gene055398.t1 | MTR_8g008680 | 69.577 | 355 | 41 | 7 | 4 | 296 | 995 | 1344 | 2.64e-151 | 464 |
| MS.gene055398.t1 | MTR_8g008680 | 79.167 | 48 | 10 | 0 | 272 | 319 | 1418 | 1465 | 2.05e-16 | 80.5 |
| MS.gene055398.t1 | MTR_8g008680 | 69.577 | 355 | 41 | 7 | 4 | 296 | 986 | 1335 | 2.82e-151 | 464 |
| MS.gene055398.t1 | MTR_8g008680 | 79.167 | 48 | 10 | 0 | 272 | 319 | 1409 | 1456 | 2.01e-16 | 80.5 |
| MS.gene055398.t1 | MTR_8g008680 | 69.577 | 355 | 41 | 7 | 4 | 296 | 984 | 1333 | 3.12e-151 | 464 |
| MS.gene055398.t1 | MTR_8g008680 | 79.167 | 48 | 10 | 0 | 272 | 319 | 1407 | 1454 | 2.04e-16 | 80.5 |
| MS.gene055398.t1 | MTR_8g008680 | 69.577 | 355 | 41 | 7 | 4 | 296 | 940 | 1289 | 6.83e-151 | 462 |
| MS.gene055398.t1 | MTR_8g008680 | 79.167 | 48 | 10 | 0 | 272 | 319 | 1363 | 1410 | 2.15e-16 | 80.5 |
| MS.gene055398.t1 | MTR_8g007000 | 70.701 | 314 | 41 | 4 | 4 | 268 | 1 | 312 | 6.68e-141 | 414 |
| MS.gene055398.t1 | MTR_8g007000 | 67.181 | 259 | 35 | 3 | 18 | 228 | 358 | 614 | 1.63e-104 | 320 |
| MS.gene055398.t1 | MTR_7g451340 | 59.834 | 361 | 58 | 9 | 4 | 284 | 1101 | 1454 | 1.82e-126 | 395 |
| MS.gene055398.t1 | MTR_7g451340 | 59.834 | 361 | 58 | 9 | 4 | 284 | 1101 | 1454 | 8.03e-126 | 395 |
| MS.gene055398.t1 | MTR_4g130570 | 37.398 | 246 | 115 | 6 | 34 | 240 | 204 | 449 | 4.45e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055398.t1 | AT3G60240 | 51.613 | 341 | 100 | 8 | 1 | 281 | 1039 | 1374 | 9.11e-87 | 285 |
| MS.gene055398.t1 | AT3G60240 | 51.613 | 341 | 100 | 8 | 1 | 281 | 1037 | 1372 | 1.04e-86 | 284 |
| MS.gene055398.t1 | AT3G60240 | 51.613 | 341 | 100 | 8 | 1 | 281 | 1041 | 1376 | 1.04e-86 | 284 |
| MS.gene055398.t1 | AT2G24050 | 34.601 | 263 | 124 | 8 | 34 | 254 | 176 | 432 | 3.45e-31 | 124 |
| MS.gene055398.t1 | AT5G57870 | 33.469 | 245 | 125 | 6 | 34 | 240 | 213 | 457 | 7.62e-30 | 120 |
| MS.gene055398.t1 | AT5G57870 | 33.469 | 245 | 125 | 6 | 34 | 240 | 217 | 461 | 7.94e-30 | 120 |
Find 79 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATGAATTTATCTTCT+AGG | 0.172827 | 8.1:-86684700 | MS.gene055398:CDS |
| TGTACCTCCTCAATCTTCTT+TGG | 0.223651 | 8.1:+86684605 | None:intergenic |
| AGAAGGAACCCCATGGATTT+TGG | 0.230347 | 8.1:-86684503 | MS.gene055398:CDS |
| TTTGGTCCTAGCAGTATTAA+TGG | 0.286270 | 8.1:-86684485 | MS.gene055398:CDS |
| ATCCATATGTTCCTTAGCTT+TGG | 0.290292 | 8.1:+86684754 | None:intergenic |
| TCCATATGTTCCTTAGCTTT+GGG | 0.324917 | 8.1:+86684755 | None:intergenic |
| TTTGAATAATATGCTAGAAA+TGG | 0.339585 | 8.1:-86685423 | None:intergenic |
| ATCTCACAAATCTACGAGTA+TGG | 0.357029 | 8.1:-86685206 | MS.gene055398:CDS |
| TAACATGCGCCTTCTTGCCT+TGG | 0.361754 | 8.1:+86684943 | None:intergenic |
| AGAACAAGAAGAGGCAAATA+AGG | 0.366081 | 8.1:-86685023 | MS.gene055398:CDS |
| TGCAAGCTGATGAGTACTAT+TGG | 0.373297 | 8.1:-86684794 | MS.gene055398:CDS |
| TTAGGAAACATCAGATTGAT+TGG | 0.380663 | 8.1:-86684923 | MS.gene055398:CDS |
| TCGAAACCCCTCTCCCCGTC+AGG | 0.385807 | 8.1:+86685389 | None:intergenic |
| TAGGGTGAGGTTTATGTTGA+AGG | 0.387044 | 8.1:-86684681 | MS.gene055398:CDS |
| CCTAGCAGTATTAATGGTTA+TGG | 0.395183 | 8.1:-86684479 | MS.gene055398:CDS |
| TGGTAGGATGGGTCGTGGTA+TGG | 0.397677 | 8.1:-86684543 | MS.gene055398:CDS |
| TTGATTTGAGAAGGAATAGA+TGG | 0.397789 | 8.1:-86684652 | MS.gene055398:CDS |
| GCCTCAACATCTTCCTCATC+AGG | 0.417737 | 8.1:+86684821 | None:intergenic |
| AAGGCAAGAAGGCGCATGTT+AGG | 0.418141 | 8.1:-86684941 | MS.gene055398:CDS |
| GAAGGAATAGATGGCAAGTA+AGG | 0.420946 | 8.1:-86684643 | MS.gene055398:CDS |
| TTATCTGAGCGCACACTGTA+TGG | 0.433960 | 8.1:-86684452 | MS.gene055398:CDS |
| GCAAGCTGATGAGTACTATT+GGG | 0.439035 | 8.1:-86684793 | MS.gene055398:CDS |
| TCCCAAAGCTAAGGAACATA+TGG | 0.439443 | 8.1:-86684756 | MS.gene055398:CDS |
| TCATATCCAGCTGAACTTGA+AGG | 0.447348 | 8.1:+86684389 | None:intergenic |
| GGTAGGATGGGTCGTGGTAT+GGG | 0.450101 | 8.1:-86684542 | MS.gene055398:CDS |
| CAACATGAATTTATCTTCTA+GGG | 0.451244 | 8.1:-86684699 | MS.gene055398:CDS |
| CGAGCTGTCAAATGAAGAAA+AGG | 0.462468 | 8.1:-86684978 | MS.gene055398:CDS |
| GACAGACCTTCAAGTTCAGC+TGG | 0.490559 | 8.1:-86684395 | MS.gene055398:CDS |
| GAAATAGCCCTGACGGGGAG+AGG | 0.493129 | 8.1:-86685397 | MS.gene055398:CDS |
| TGAATTTATCTTCTAGGGTG+AGG | 0.503088 | 8.1:-86684694 | MS.gene055398:CDS |
| AGGATGTAATTGATTTGAGA+AGG | 0.507541 | 8.1:-86684661 | MS.gene055398:CDS |
| GAAGTTACTAGGTCAGTGTC+AGG | 0.511002 | 8.1:-86684846 | MS.gene055398:CDS |
| AAATAGCCCTGACGGGGAGA+GGG | 0.517346 | 8.1:-86685396 | MS.gene055398:CDS |
| CAAGTAAGGAGGAAAGTTGA+TGG | 0.517622 | 8.1:-86684629 | MS.gene055398:CDS |
| TATGTTCCTTAGCTTTGGGA+TGG | 0.519532 | 8.1:+86684759 | None:intergenic |
| GGTACACAAAGATGCTGTGC+AGG | 0.527125 | 8.1:-86684588 | MS.gene055398:CDS |
| TCAAGCACAAGCTGGTAGGA+TGG | 0.530460 | 8.1:-86684555 | MS.gene055398:CDS |
| GGAATAGATGGCAAGTAAGG+AGG | 0.534393 | 8.1:-86684640 | MS.gene055398:CDS |
| AGAGAAGAACCAAGGCAAGA+AGG | 0.535181 | 8.1:-86684952 | MS.gene055398:CDS |
| AAAATTCTATTGAAATTCTG+AGG | 0.538212 | 8.1:+86685281 | None:intergenic |
| TGGAAAGAAATAGCCCTGAC+GGG | 0.551832 | 8.1:-86685403 | MS.gene055398:CDS |
| AGGCAAGCTCAAGCACAAGC+TGG | 0.560236 | 8.1:-86684563 | MS.gene055398:CDS |
| CGAGGCTAAGAAGAAGGAAG+AGG | 0.562724 | 8.1:-86685345 | MS.gene055398:CDS |
| CAAGCACAAGCTGGTAGGAT+GGG | 0.563931 | 8.1:-86684554 | MS.gene055398:CDS |
| ACAAAGATGCTGTGCAGGAG+AGG | 0.568686 | 8.1:-86684583 | MS.gene055398:CDS |
| CTGCTAGGACCAAAATCCAT+GGG | 0.569396 | 8.1:+86684494 | None:intergenic |
| GATGCACGAGGCTAAGAAGA+AGG | 0.571356 | 8.1:-86685351 | MS.gene055398:CDS |
| TCTCAGTTACTATTATGAGC+TGG | 0.573466 | 8.1:+86684353 | None:intergenic |
| TCCTGATGAGGAAGATGTTG+AGG | 0.576359 | 8.1:-86684822 | MS.gene055398:CDS |
| ATGGAAAGAAATAGCCCTGA+CGG | 0.577062 | 8.1:-86685404 | MS.gene055398:CDS |
| GAAACAATCAATCTGCAAGA+AGG | 0.578155 | 8.1:-86684520 | MS.gene055398:CDS |
| ACTGCTAGGACCAAAATCCA+TGG | 0.578358 | 8.1:+86684493 | None:intergenic |
| ATATGGATGTATATTTCGAA+AGG | 0.584216 | 8.1:-86684739 | MS.gene055398:CDS |
| AATAGCCCTGACGGGGAGAG+GGG | 0.585686 | 8.1:-86685395 | MS.gene055398:CDS |
| CCATAACCATTAATACTGCT+AGG | 0.587816 | 8.1:+86684479 | None:intergenic |
| ATGTCAGGAGGAATTTGAGA+GGG | 0.594330 | 8.1:-86685059 | MS.gene055398:intron |
| AAGCTCAAGCACAAGCTGGT+AGG | 0.596349 | 8.1:-86684559 | MS.gene055398:CDS |
| TGATGGTCCAAAGAAGATTG+AGG | 0.603527 | 8.1:-86684612 | MS.gene055398:CDS |
| GATTGACCATCCCAAAGCTA+AGG | 0.604981 | 8.1:-86684765 | MS.gene055398:CDS |
| AAAGGAGCAGAGAAGAACCA+AGG | 0.609616 | 8.1:-86684960 | MS.gene055398:CDS |
| CAAGCTGGTAGGATGGGTCG+TGG | 0.613496 | 8.1:-86684548 | MS.gene055398:CDS |
| GAATTTGAGAGGGGTGAACG+AGG | 0.620341 | 8.1:-86685049 | MS.gene055398:CDS |
| GAGTGTATAAAGAAGTTACT+AGG | 0.621779 | 8.1:-86684857 | MS.gene055398:CDS |
| CGAAACCCCTCTCCCCGTCA+GGG | 0.621995 | 8.1:+86685390 | None:intergenic |
| CACACTGTATGGCTCTAGAG+AGG | 0.624363 | 8.1:-86684441 | MS.gene055398:CDS |
| AGAGGCAAATAAGGTTGATG+AGG | 0.630177 | 8.1:-86685014 | MS.gene055398:CDS |
| ACGAGGACGAGAACAAGAAG+AGG | 0.633995 | 8.1:-86685032 | MS.gene055398:CDS |
| AGAAGGAAGAGGCAAAGCAG+AGG | 0.635113 | 8.1:-86685334 | MS.gene055398:CDS |
| ATCTGCAAGAAGGAACCCCA+TGG | 0.642895 | 8.1:-86684510 | MS.gene055398:CDS |
| AATGTCAGGAGGAATTTGAG+AGG | 0.644240 | 8.1:-86685060 | MS.gene055398:intron |
| AATAAGGTTGATGAGGCTGA+AGG | 0.649873 | 8.1:-86685007 | MS.gene055398:CDS |
| GACAACGCGATCACTCTCGT+TGG | 0.658009 | 8.1:-86685233 | MS.gene055398:CDS |
| TCAGTGTCAGGATCCTGATG+AGG | 0.670181 | 8.1:-86684834 | MS.gene055398:CDS |
| GGAAAGAAATAGCCCTGACG+GGG | 0.670336 | 8.1:-86685402 | MS.gene055398:CDS |
| GTATTATTTGATGATGCACG+AGG | 0.681568 | 8.1:-86685363 | MS.gene055398:CDS |
| CAAGCTGATGAGTACTATTG+GGG | 0.684037 | 8.1:-86684792 | MS.gene055398:CDS |
| TGTCAGGAGGAATTTGAGAG+GGG | 0.694996 | 8.1:-86685058 | MS.gene055398:intron |
| TGGTCCAAAGAAGATTGAGG+AGG | 0.721298 | 8.1:-86684609 | MS.gene055398:CDS |
| TGCTAGGACCAAAATCCATG+GGG | 0.729522 | 8.1:+86684495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCTATTGAAATTCTG+AGG | + | chr8.1:86684490-86684509 | None:intergenic | 20.0% |
| !! | GTTATTATTAAACAAATGTC+AGG | - | chr8.1:86684694-86684713 | MS.gene055398:CDS | 20.0% |
| !!! | ACGAAAAGATAACTTTTAAA+AGG | - | chr8.1:86684672-86684691 | MS.gene055398:CDS | 20.0% |
| !!! | TTTCAATAGAATTTTTGAAC+AGG | - | chr8.1:86684495-86684514 | MS.gene055398:CDS | 20.0% |
| ! | ACAACATGAATTTATCTTCT+AGG | - | chr8.1:86685068-86685087 | MS.gene055398:intron | 25.0% |
| ! | ATATGGATGTATATTTCGAA+AGG | - | chr8.1:86685029-86685048 | MS.gene055398:CDS | 25.0% |
| ! | ATTATTAAACAAATGTCAGG+AGG | - | chr8.1:86684697-86684716 | MS.gene055398:CDS | 25.0% |
| ! | CAACATGAATTTATCTTCTA+GGG | - | chr8.1:86685069-86685088 | MS.gene055398:intron | 25.0% |
| GAGTGTATAAAGAAGTTACT+AGG | - | chr8.1:86684911-86684930 | MS.gene055398:CDS | 30.0% | |
| TTAGGAAACATCAGATTGAT+TGG | - | chr8.1:86684845-86684864 | MS.gene055398:CDS | 30.0% | |
| ! | AGAAAAAAATGTTGACTGAG+AGG | - | chr8.1:86684879-86684898 | MS.gene055398:CDS | 30.0% |
| ! | TTGATTTGAGAAGGAATAGA+TGG | - | chr8.1:86685116-86685135 | MS.gene055398:intron | 30.0% |
| !! | AGGATGTAATTGATTTGAGA+AGG | - | chr8.1:86685107-86685126 | MS.gene055398:intron | 30.0% |
| AGAACAAGAAGAGGCAAATA+AGG | - | chr8.1:86684745-86684764 | MS.gene055398:CDS | 35.0% | |
| ATCCATATGTTCCTTAGCTT+TGG | + | chr8.1:86685017-86685036 | None:intergenic | 35.0% | |
| ATCTCACAAATCTACGAGTA+TGG | - | chr8.1:86684562-86684581 | MS.gene055398:CDS | 35.0% | |
| CCATAACCATTAATACTGCT+AGG | + | chr8.1:86685292-86685311 | None:intergenic | 35.0% | |
| CCTAGCAGTATTAATGGTTA+TGG | - | chr8.1:86685289-86685308 | MS.gene055398:CDS | 35.0% | |
| GAAACAATCAATCTGCAAGA+AGG | - | chr8.1:86685248-86685267 | MS.gene055398:CDS | 35.0% | |
| TTTGGTCCTAGCAGTATTAA+TGG | - | chr8.1:86685283-86685302 | MS.gene055398:CDS | 35.0% | |
| ! | TCCATATGTTCCTTAGCTTT+GGG | + | chr8.1:86685016-86685035 | None:intergenic | 35.0% |
| !! | GTATTATTTGATGATGCACG+AGG | - | chr8.1:86684405-86684424 | MS.gene055398:CDS | 35.0% |
| !! | TGAATTTATCTTCTAGGGTG+AGG | - | chr8.1:86685074-86685093 | MS.gene055398:intron | 35.0% |
| AATGTCAGGAGGAATTTGAG+AGG | - | chr8.1:86684708-86684727 | MS.gene055398:CDS | 40.0% | |
| ATGGAAAGAAATAGCCCTGA+CGG | - | chr8.1:86684364-86684383 | MS.gene055398:CDS | 40.0% | |
| ATGTCAGGAGGAATTTGAGA+GGG | - | chr8.1:86684709-86684728 | MS.gene055398:CDS | 40.0% | |
| CAAGCTGATGAGTACTATTG+GGG | - | chr8.1:86684976-86684995 | MS.gene055398:CDS | 40.0% | |
| CAAGTAAGGAGGAAAGTTGA+TGG | - | chr8.1:86685139-86685158 | MS.gene055398:intron | 40.0% | |
| CGAGCTGTCAAATGAAGAAA+AGG | - | chr8.1:86684790-86684809 | MS.gene055398:CDS | 40.0% | |
| GAAGGAATAGATGGCAAGTA+AGG | - | chr8.1:86685125-86685144 | MS.gene055398:intron | 40.0% | |
| GCAAGCTGATGAGTACTATT+GGG | - | chr8.1:86684975-86684994 | MS.gene055398:CDS | 40.0% | |
| GGCATACATTTCACAGAAGT+TGG | + | chr8.1:86684603-86684622 | None:intergenic | 40.0% | |
| TAGGGTGAGGTTTATGTTGA+AGG | - | chr8.1:86685087-86685106 | MS.gene055398:intron | 40.0% | |
| TCATATCCAGCTGAACTTGA+AGG | + | chr8.1:86685382-86685401 | None:intergenic | 40.0% | |
| TCCCAAAGCTAAGGAACATA+TGG | - | chr8.1:86685012-86685031 | MS.gene055398:CDS | 40.0% | |
| TGATGGTCCAAAGAAGATTG+AGG | - | chr8.1:86685156-86685175 | MS.gene055398:intron | 40.0% | |
| TGCAAGCTGATGAGTACTAT+TGG | - | chr8.1:86684974-86684993 | MS.gene055398:CDS | 40.0% | |
| TGTACCTCCTCAATCTTCTT+TGG | + | chr8.1:86685166-86685185 | None:intergenic | 40.0% | |
| !! | AATAAGGTTGATGAGGCTGA+AGG | - | chr8.1:86684761-86684780 | MS.gene055398:CDS | 40.0% |
| !! | AGAGGCAAATAAGGTTGATG+AGG | - | chr8.1:86684754-86684773 | MS.gene055398:CDS | 40.0% |
| !! | TATGTTCCTTAGCTTTGGGA+TGG | + | chr8.1:86685012-86685031 | None:intergenic | 40.0% |
| AAAGGAGCAGAGAAGAACCA+AGG | - | chr8.1:86684808-86684827 | MS.gene055398:CDS | 45.0% | |
| ACTGCTAGGACCAAAATCCA+TGG | + | chr8.1:86685278-86685297 | None:intergenic | 45.0% | |
| AGAGAAGAACCAAGGCAAGA+AGG | - | chr8.1:86684816-86684835 | MS.gene055398:CDS | 45.0% | |
| CTGCTAGGACCAAAATCCAT+GGG | + | chr8.1:86685277-86685296 | None:intergenic | 45.0% | |
| GAAGTTACTAGGTCAGTGTC+AGG | - | chr8.1:86684922-86684941 | MS.gene055398:CDS | 45.0% | |
| GATTGACCATCCCAAAGCTA+AGG | - | chr8.1:86685003-86685022 | MS.gene055398:CDS | 45.0% | |
| GGAATAGATGGCAAGTAAGG+AGG | - | chr8.1:86685128-86685147 | MS.gene055398:intron | 45.0% | |
| TCCTGATGAGGAAGATGTTG+AGG | - | chr8.1:86684946-86684965 | MS.gene055398:CDS | 45.0% | |
| TCGTTGTCCACACTGAAATC+AGG | + | chr8.1:86684656-86684675 | None:intergenic | 45.0% | |
| TGAGTTGCCTGATTTCAGTG+TGG | - | chr8.1:86684646-86684665 | MS.gene055398:CDS | 45.0% | |
| TGCTAGGACCAAAATCCATG+GGG | + | chr8.1:86685276-86685295 | None:intergenic | 45.0% | |
| TGGAAAGAAATAGCCCTGAC+GGG | - | chr8.1:86684365-86684384 | MS.gene055398:CDS | 45.0% | |
| TGGTCCAAAGAAGATTGAGG+AGG | - | chr8.1:86685159-86685178 | MS.gene055398:intron | 45.0% | |
| TGTCAGGAGGAATTTGAGAG+GGG | - | chr8.1:86684710-86684729 | MS.gene055398:CDS | 45.0% | |
| TTATCTGAGCGCACACTGTA+TGG | - | chr8.1:86685316-86685335 | MS.gene055398:CDS | 45.0% | |
| ! | AGAAGGAACCCCATGGATTT+TGG | - | chr8.1:86685265-86685284 | MS.gene055398:CDS | 45.0% |
| AAGCTCAAGCACAAGCTGGT+AGG | - | chr8.1:86685209-86685228 | MS.gene055398:CDS | 50.0% | |
| ACAAAGATGCTGTGCAGGAG+AGG | - | chr8.1:86685185-86685204 | MS.gene055398:intron | 50.0% | |
| ACGAGGACGAGAACAAGAAG+AGG | - | chr8.1:86684736-86684755 | MS.gene055398:CDS | 50.0% | |
| AGAAGGAAGAGGCAAAGCAG+AGG | - | chr8.1:86684434-86684453 | MS.gene055398:CDS | 50.0% | |
| AGCCAGATGTGAGCAGAAGT+TGG | + | chr8.1:86684624-86684643 | None:intergenic | 50.0% | |
| ATCTGCAAGAAGGAACCCCA+TGG | - | chr8.1:86685258-86685277 | MS.gene055398:CDS | 50.0% | |
| CAAGCACAAGCTGGTAGGAT+GGG | - | chr8.1:86685214-86685233 | MS.gene055398:CDS | 50.0% | |
| CGAGGCTAAGAAGAAGGAAG+AGG | - | chr8.1:86684423-86684442 | MS.gene055398:CDS | 50.0% | |
| GAATTTGAGAGGGGTGAACG+AGG | - | chr8.1:86684719-86684738 | MS.gene055398:CDS | 50.0% | |
| GATGCACGAGGCTAAGAAGA+AGG | - | chr8.1:86684417-86684436 | MS.gene055398:CDS | 50.0% | |
| GCCTCAACATCTTCCTCATC+AGG | + | chr8.1:86684950-86684969 | None:intergenic | 50.0% | |
| GGAAAGAAATAGCCCTGACG+GGG | - | chr8.1:86684366-86684385 | MS.gene055398:CDS | 50.0% | |
| GGTACACAAAGATGCTGTGC+AGG | - | chr8.1:86685180-86685199 | MS.gene055398:intron | 50.0% | |
| TAACATGCGCCTTCTTGCCT+TGG | + | chr8.1:86684828-86684847 | None:intergenic | 50.0% | |
| TCAAGCACAAGCTGGTAGGA+TGG | - | chr8.1:86685213-86685232 | MS.gene055398:CDS | 50.0% | |
| TCAGTGTCAGGATCCTGATG+AGG | - | chr8.1:86684934-86684953 | MS.gene055398:CDS | 50.0% | |
| TGCCAACTTCTGCTCACATC+TGG | - | chr8.1:86684619-86684638 | MS.gene055398:CDS | 50.0% | |
| ! | AAGGCAAGAAGGCGCATGTT+AGG | - | chr8.1:86684827-86684846 | MS.gene055398:CDS | 50.0% |
| ! | GACAGACCTTCAAGTTCAGC+TGG | - | chr8.1:86685373-86685392 | MS.gene055398:CDS | 50.0% |
| !! | CACACTGTATGGCTCTAGAG+AGG | - | chr8.1:86685327-86685346 | MS.gene055398:CDS | 50.0% |
| AAATAGCCCTGACGGGGAGA+GGG | - | chr8.1:86684372-86684391 | MS.gene055398:CDS | 55.0% | |
| AGGCAAGCTCAAGCACAAGC+TGG | - | chr8.1:86685205-86685224 | MS.gene055398:CDS | 55.0% | |
| GACAACGCGATCACTCTCGT+TGG | - | chr8.1:86684535-86684554 | MS.gene055398:CDS | 55.0% | |
| GGTAGGATGGGTCGTGGTAT+GGG | - | chr8.1:86685226-86685245 | MS.gene055398:CDS | 55.0% | |
| TGGTAGGATGGGTCGTGGTA+TGG | - | chr8.1:86685225-86685244 | MS.gene055398:CDS | 55.0% | |
| AATAGCCCTGACGGGGAGAG+GGG | - | chr8.1:86684373-86684392 | MS.gene055398:CDS | 60.0% | |
| CAAGCTGGTAGGATGGGTCG+TGG | - | chr8.1:86685220-86685239 | MS.gene055398:CDS | 60.0% | |
| GAAATAGCCCTGACGGGGAG+AGG | - | chr8.1:86684371-86684390 | MS.gene055398:CDS | 60.0% | |
| CGAAACCCCTCTCCCCGTCA+GGG | + | chr8.1:86684381-86684400 | None:intergenic | 65.0% | |
| TCGAAACCCCTCTCCCCGTC+AGG | + | chr8.1:86684382-86684401 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 86684355 | 86685435 | 86684355 | ID=MS.gene055398 |
| chr8.1 | mRNA | 86684355 | 86685435 | 86684355 | ID=MS.gene055398.t1;Parent=MS.gene055398 |
| chr8.1 | exon | 86685196 | 86685435 | 86685196 | ID=MS.gene055398.t1.exon1;Parent=MS.gene055398.t1 |
| chr8.1 | CDS | 86685196 | 86685435 | 86685196 | ID=cds.MS.gene055398.t1;Parent=MS.gene055398.t1 |
| chr8.1 | exon | 86684355 | 86685074 | 86684355 | ID=MS.gene055398.t1.exon2;Parent=MS.gene055398.t1 |
| chr8.1 | CDS | 86684355 | 86685074 | 86684355 | ID=cds.MS.gene055398.t1;Parent=MS.gene055398.t1 |
| Gene Sequence |
| Protein sequence |
