Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95616.t1 | XP_013449160.1 | 93.2 | 1120 | 76 | 0 | 1 | 1120 | 1 | 1120 | 0.00E+00 | 2033.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95616.t1 | Q5T5C0 | 25.6 | 348 | 198 | 13 | 16 | 351 | 32 | 330 | 1.3e-16 | 90.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95616.t1 | A0A072U0I8 | 93.2 | 1120 | 76 | 0 | 1 | 1120 | 1 | 1120 | 0.0e+00 | 2033.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene95616 | 0.823935 | 1.06E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene95616 | 0.818941 | 1.51E-52 | -1.69E-46 |
| MS.gene053082 | MS.gene95616 | 0.826874 | 2.13E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene95616 | 0.805922 | 1.06E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene95616 | 0.831421 | 1.68E-55 | -1.69E-46 |
| MS.gene055398 | MS.gene95616 | 0.821373 | 4.18E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene95616 | 0.817719 | 2.85E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene95616 | 0.8138 | 2.13E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene95616 | 0.817848 | 2.67E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene95616 | 0.810975 | 8.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95616.t1 | MTR_7g068810 | 96.429 | 1120 | 40 | 0 | 1 | 1120 | 1 | 1120 | 0.0 | 2212 |
| MS.gene95616.t1 | MTR_5g082840 | 44.625 | 1107 | 569 | 20 | 29 | 1120 | 29 | 1106 | 0.0 | 858 |
| MS.gene95616.t1 | MTR_8g073335 | 25.685 | 1168 | 698 | 33 | 1 | 1116 | 1 | 1050 | 9.29e-92 | 318 |
| MS.gene95616.t1 | MTR_5g024210 | 25.377 | 1127 | 699 | 33 | 25 | 1116 | 87 | 1106 | 9.18e-77 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95616.t1 | AT5G05570 | 45.406 | 1132 | 573 | 17 | 1 | 1120 | 1 | 1099 | 0.0 | 924 |
| MS.gene95616.t1 | AT5G05570 | 44.425 | 1157 | 573 | 18 | 1 | 1120 | 1 | 1124 | 0.0 | 911 |
| MS.gene95616.t1 | AT4G35560 | 25.150 | 1169 | 697 | 40 | 1 | 1116 | 1 | 1044 | 9.76e-73 | 263 |
| MS.gene95616.t1 | AT4G35560 | 25.235 | 1169 | 697 | 40 | 1 | 1116 | 1 | 1045 | 6.16e-72 | 260 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTGTTGATTGCATTTC+AGG | 0.092632 | 7.4:+34719973 | MS.gene95616:intron |
| CTTTCTTGCACAGGCTCTTC+AGG | 0.145395 | 7.4:-34722923 | None:intergenic |
| GAGTTTCCTGAAGGTGTTTC+TGG | 0.183985 | 7.4:-34722429 | None:intergenic |
| TGTTCAAATTGGCCCTTAAC+TGG | 0.191166 | 7.4:+34721085 | MS.gene95616:CDS |
| GCAATTTCAATGTATGTTAT+AGG | 0.202365 | 7.4:+34722561 | MS.gene95616:CDS |
| CAACCGGCCATTACATTTAA+AGG | 0.205148 | 7.4:+34722530 | MS.gene95616:CDS |
| GTTCAGCTTCTTGTTCAAAT+TGG | 0.205651 | 7.4:+34721074 | MS.gene95616:CDS |
| CTTTCACAACCTTATTCTTC+TGG | 0.208068 | 7.4:+34718190 | MS.gene95616:CDS |
| GATAGAAACTGCCGGGTTTC+CGG | 0.225430 | 7.4:+34718138 | MS.gene95616:intron |
| TTGTTCTGCTTCCTTGCTTC+TGG | 0.232304 | 7.4:+34721594 | MS.gene95616:CDS |
| ATTTGTCAGCTAAATTTCTA+AGG | 0.258315 | 7.4:+34717767 | MS.gene95616:CDS |
| AGGATGGACTGCTAATTCTT+TGG | 0.270386 | 7.4:+34719993 | MS.gene95616:CDS |
| CGTGCAGACCTTACGCTTAA+TGG | 0.270674 | 7.4:+34720660 | MS.gene95616:CDS |
| AGACTGGAACATTTGAAATA+AGG | 0.273849 | 7.4:+34723275 | MS.gene95616:CDS |
| CTCCAAACCAATGAAGTAAT+TGG | 0.283599 | 7.4:-34722363 | None:intergenic |
| GTACAGATCTTTACCAGATT+TGG | 0.286118 | 7.4:+34723558 | MS.gene95616:intron |
| TCTGGAACCAAACTTGCTAT+TGG | 0.293339 | 7.4:+34722141 | MS.gene95616:CDS |
| CCATAGTGAATCACAATTCT+TGG | 0.294823 | 7.4:-34716098 | None:intergenic |
| ATGTTCCAAATGACCGAAAT+TGG | 0.296250 | 7.4:-34724179 | None:intergenic |
| AACCTCCAATTTCGGTCATT+TGG | 0.297075 | 7.4:+34724174 | MS.gene95616:CDS |
| TGCTTCCTTGCTTCTGGCTG+TGG | 0.309147 | 7.4:+34721600 | MS.gene95616:CDS |
| CCCATTGTAAAGAACAAATA+AGG | 0.321997 | 7.4:-34717502 | None:intergenic |
| CGCACGGCAGACCTGCAAAA+TGG | 0.323423 | 7.4:+34725814 | MS.gene95616:CDS |
| CACCAATTACTTCATTGGTT+TGG | 0.328055 | 7.4:+34722361 | MS.gene95616:CDS |
| AACATTCAAAATCTTGCTAT+TGG | 0.328585 | 7.4:+34723200 | MS.gene95616:CDS |
| GAAGGTGTTTCTGGTTTCCT+TGG | 0.329425 | 7.4:-34722420 | None:intergenic |
| GAAGCTAAAATTGTGTTTCT+TGG | 0.329697 | 7.4:+34720025 | MS.gene95616:CDS |
| TCAAACAAGAAACAAGCTTA+TGG | 0.330995 | 7.4:+34724763 | MS.gene95616:CDS |
| GGATGGACTGCTAATTCTTT+GGG | 0.332819 | 7.4:+34719994 | MS.gene95616:CDS |
| CCAGGCTAATGGTTCTGAAT+TGG | 0.336109 | 7.4:+34723753 | MS.gene95616:intron |
| TTAACTCTTGAATGGTCATC+TGG | 0.338559 | 7.4:+34720612 | MS.gene95616:CDS |
| GACAGAGAAAGCGGTAATAT+TGG | 0.338846 | 7.4:-34717528 | None:intergenic |
| TCTCATCTTCATCTTTCAAT+TGG | 0.339397 | 7.4:-34720063 | None:intergenic |
| TTTGATAATTTCCAGGCTAA+TGG | 0.340999 | 7.4:+34723742 | MS.gene95616:intron |
| AAAATTCCAACCTCCAATTT+CGG | 0.346963 | 7.4:+34724166 | MS.gene95616:CDS |
| TCCGCCACCAGTTCCAAATC+TGG | 0.348858 | 7.4:-34723571 | None:intergenic |
| CAGAACACCTGAAGAAATTA+TGG | 0.350563 | 7.4:+34724609 | MS.gene95616:CDS |
| TCTTATATTTGCTACATAGA+AGG | 0.353498 | 7.4:+34721220 | MS.gene95616:CDS |
| AAGAAATAAGTGCTCTTTGT+TGG | 0.355090 | 7.4:+34720146 | MS.gene95616:CDS |
| ACGACTGTGCCAGCGATTCT+AGG | 0.356726 | 7.4:+34724091 | MS.gene95616:CDS |
| CAGATAAGTCACAAAGTGAT+AGG | 0.361846 | 7.4:+34724539 | MS.gene95616:intron |
| GAATGCTCCAGTGACAAAAT+TGG | 0.364061 | 7.4:+34721567 | MS.gene95616:CDS |
| CTCGCTGTTGGATACTTAGA+TGG | 0.366231 | 7.4:+34720190 | MS.gene95616:CDS |
| AAGCTCACCAATTACTTCAT+TGG | 0.367596 | 7.4:+34722356 | MS.gene95616:CDS |
| ACCATGTGTTCCGATGATTA+TGG | 0.368780 | 7.4:+34723646 | MS.gene95616:CDS |
| TTTGCAGGTCTGCCGTGCGC+TGG | 0.369771 | 7.4:-34725810 | None:intergenic |
| AAGGAAGTGGAGCTTGATAT+AGG | 0.374339 | 7.4:+34724262 | MS.gene95616:CDS |
| TAGCTGGAGAAAATGAATTC+AGG | 0.375722 | 7.4:+34723791 | MS.gene95616:CDS |
| TCTTCAGGTGTTCTGACCCT+TGG | 0.381611 | 7.4:-34724601 | None:intergenic |
| GTTGATTCCTTTAAATGTAA+TGG | 0.382942 | 7.4:-34722537 | None:intergenic |
| CCACCATTTCCTCCTTTCCA+TGG | 0.383097 | 7.4:-34725878 | None:intergenic |
| CTTTGTTGGGCATCTTCTGA+TGG | 0.384102 | 7.4:+34720160 | MS.gene95616:CDS |
| TGTGAAAGAATTCCAACAAT+TGG | 0.386318 | 7.4:-34718175 | None:intergenic |
| TAAGCAGCCATAATTTCTTC+AGG | 0.386811 | 7.4:-34724616 | None:intergenic |
| CGGGATTCTTCTTTCTGCAT+TGG | 0.389526 | 7.4:-34720302 | None:intergenic |
| AGCTTCCGCGGTACTCTTCA+AGG | 0.392281 | 7.4:-34722897 | None:intergenic |
| AACCTTATTCTTCTGGGAAC+AGG | 0.397060 | 7.4:+34718197 | MS.gene95616:CDS |
| TGCCTGTTCCCAGAAGAATA+AGG | 0.397867 | 7.4:-34718199 | None:intergenic |
| GTAGTTTGCTGGCCTTTAGA+AGG | 0.402908 | 7.4:-34720247 | None:intergenic |
| ATTATGAGATTTGTGACTAC+TGG | 0.403349 | 7.4:-34720344 | None:intergenic |
| TAGTTTACAATCAACTGAAT+TGG | 0.404948 | 7.4:+34716073 | MS.gene95616:CDS |
| ACTGGTCAGTTGTTTGTGTA+TGG | 0.405579 | 7.4:+34720373 | MS.gene95616:CDS |
| CCTTATTTGTTCTTTACAAT+GGG | 0.406302 | 7.4:+34717502 | MS.gene95616:CDS |
| CCAAGAATTGTGATTCACTA+TGG | 0.406867 | 7.4:+34716098 | MS.gene95616:CDS |
| TTTCACAACCTTATTCTTCT+GGG | 0.407166 | 7.4:+34718191 | MS.gene95616:CDS |
| TAAAATATCATCCGGAAGAT+TGG | 0.410595 | 7.4:-34720104 | None:intergenic |
| TCTTCAGAAACCACACACTC+TGG | 0.415190 | 7.4:+34722986 | MS.gene95616:CDS |
| AGAAATAAGTGCTCTTTGTT+GGG | 0.416921 | 7.4:+34720147 | MS.gene95616:CDS |
| TGAAACAAACACCAATCTTC+CGG | 0.419014 | 7.4:+34720093 | MS.gene95616:CDS |
| AAACCCCTTGCTCCTATACT+TGG | 0.419341 | 7.4:-34720708 | None:intergenic |
| TTTCTTGCACAGGCTCTTCA+GGG | 0.420443 | 7.4:-34722922 | None:intergenic |
| ACAACTTCCTTACAAATACT+TGG | 0.420654 | 7.4:+34717061 | MS.gene95616:CDS |
| CAAAACAAGGGATATTTAGT+TGG | 0.421760 | 7.4:+34717218 | MS.gene95616:CDS |
| GTGTATGGTGGTGACGAAAT+TGG | 0.423490 | 7.4:+34720388 | MS.gene95616:CDS |
| GTTGAGCTGCTTTCTTGCAC+AGG | 0.428988 | 7.4:-34722932 | None:intergenic |
| GTTCAAATTGGCCCTTAACT+GGG | 0.438451 | 7.4:+34721086 | MS.gene95616:CDS |
| GCCTTATTTGTTCTTTACAA+TGG | 0.440656 | 7.4:+34717501 | MS.gene95616:CDS |
| TTTAACCATGGACAAGTGGC+TGG | 0.440892 | 7.4:-34721116 | None:intergenic |
| CACTTATTTCTTTATCTCCC+AGG | 0.443709 | 7.4:-34720135 | None:intergenic |
| TCATAATAGTGTATTTGTCC+AGG | 0.446171 | 7.4:-34720765 | None:intergenic |
| TAAGTATCCAACAGCGAGAA+TGG | 0.448584 | 7.4:-34720185 | None:intergenic |
| CTTCAGAAACCACACACTCT+GGG | 0.450490 | 7.4:+34722987 | MS.gene95616:CDS |
| CATTAATGTCTGAGCAGAAT+AGG | 0.450554 | 7.4:+34720805 | MS.gene95616:CDS |
| ACCAGATTTGGAACTGGTGG+CGG | 0.450594 | 7.4:+34723570 | MS.gene95616:CDS |
| TCCAACAATTGGTTGGTCGC+TGG | 0.451139 | 7.4:-34718164 | None:intergenic |
| ACACTCTGGGGATATCCATT+TGG | 0.452074 | 7.4:+34723000 | MS.gene95616:CDS |
| GACCATTGCAAGACAATGAC+CGG | 0.456291 | 7.4:-34720322 | None:intergenic |
| AAAATTGTGTTTCTTGGTGG+TGG | 0.459225 | 7.4:+34720031 | MS.gene95616:CDS |
| GCTTCCTTGCTTCTGGCTGT+GGG | 0.461533 | 7.4:+34721601 | MS.gene95616:CDS |
| TTGTCCATGGTTAAAAGTGC+TGG | 0.464109 | 7.4:+34721124 | MS.gene95616:CDS |
| GCATTCATCTCATTATTAGC+TGG | 0.466277 | 7.4:+34723775 | MS.gene95616:CDS |
| ATCTTTACCAGATTTGGAAC+TGG | 0.469123 | 7.4:+34723564 | MS.gene95616:CDS |
| TAGCAAATATAAGACAAGAT+TGG | 0.470732 | 7.4:-34721211 | None:intergenic |
| GGTAGTAGTGGCCGATGAAA+AGG | 0.471467 | 7.4:+34724243 | MS.gene95616:CDS |
| AGTGTAGTTGAGGGTGATAC+TGG | 0.474842 | 7.4:+34722495 | MS.gene95616:CDS |
| GATGGCTCCATTCTCGCTGT+TGG | 0.475285 | 7.4:+34720178 | MS.gene95616:CDS |
| CTTCAAAAGTTGTCCTTCCT+CGG | 0.475576 | 7.4:-34717734 | None:intergenic |
| CGTACCTCCAAGTATTTGTA+AGG | 0.476507 | 7.4:-34717068 | None:intergenic |
| CTTAAATGATAATGATATCC+AGG | 0.479937 | 7.4:+34717244 | MS.gene95616:CDS |
| TTCGATGAATTTAACTGACT+TGG | 0.480073 | 7.4:-34720912 | None:intergenic |
| TGGCAGGGATGGAAGACTTA+AGG | 0.481066 | 7.4:+34716995 | MS.gene95616:intron |
| AGGAAACCAGAAACACCTTC+AGG | 0.482972 | 7.4:+34722423 | MS.gene95616:CDS |
| GTAGGTTAATGGTGTAAAAG+TGG | 0.483844 | 7.4:+34721537 | MS.gene95616:intron |
| GATAGGGAGAAATTATTTCA+AGG | 0.484620 | 7.4:+34724556 | MS.gene95616:CDS |
| GTTTCCAGTGCTAGTACCTA+TGG | 0.487052 | 7.4:+34720851 | MS.gene95616:CDS |
| TTCAAATTGGCCCTTAACTG+GGG | 0.487106 | 7.4:+34721087 | MS.gene95616:CDS |
| GATCTTAAAGACTGCTCTGA+TGG | 0.492473 | 7.4:+34721739 | MS.gene95616:CDS |
| AAACAAGCTTATGGAGAGGC+AGG | 0.493216 | 7.4:+34724772 | MS.gene95616:CDS |
| TGTTCCCAGCCACTTGTCCA+TGG | 0.500792 | 7.4:+34721111 | MS.gene95616:CDS |
| TTTGTCAGCTAAATTTCTAA+GGG | 0.502655 | 7.4:+34717768 | MS.gene95616:CDS |
| GCAAAAGATAGTGCTTGTAC+TGG | 0.503116 | 7.4:-34722114 | None:intergenic |
| GATGGAAGACTTAAGGTGAT+TGG | 0.507610 | 7.4:+34717002 | MS.gene95616:CDS |
| ATTCTATCATTGCTTCAGAC+TGG | 0.508271 | 7.4:+34723259 | MS.gene95616:CDS |
| GTCCGCAAAAGCATTGATAC+AGG | 0.508818 | 7.4:+34723066 | MS.gene95616:CDS |
| ATTCTAGGCGGTATTGTCAA+AGG | 0.509217 | 7.4:+34724106 | MS.gene95616:CDS |
| AGACCATGGAAAGGAGGAAA+TGG | 0.509342 | 7.4:+34725875 | MS.gene95616:CDS |
| CTTTCAGTTCCTACAAAACA+AGG | 0.512056 | 7.4:+34717205 | MS.gene95616:intron |
| TCCAGCGACCAACCAATTGT+TGG | 0.513314 | 7.4:+34718163 | MS.gene95616:CDS |
| TCGTCCGCAGCACCTTCTAA+AGG | 0.514522 | 7.4:+34720235 | MS.gene95616:CDS |
| GATGTGTGGCATCACACAAA+AGG | 0.514939 | 7.4:-34721189 | None:intergenic |
| GCTAAAATTGTGTTTCTTGG+TGG | 0.515952 | 7.4:+34720028 | MS.gene95616:CDS |
| CTGGTAAAACAGTCTCCAAC+CGG | 0.516483 | 7.4:+34722514 | MS.gene95616:CDS |
| CATGACGCTCCACAAGGAAA+AGG | 0.517766 | 7.4:+34722054 | MS.gene95616:CDS |
| CTCTTCAGGGTGAGCTTCCG+CGG | 0.521828 | 7.4:-34722909 | None:intergenic |
| AAATCTCATAATGATTGTAC+TGG | 0.522929 | 7.4:+34720355 | MS.gene95616:CDS |
| AAGCTTGTTTCTTGTTTGAG+AGG | 0.522959 | 7.4:-34724759 | None:intergenic |
| GTTAATGGTGTAAAAGTGGC+AGG | 0.523950 | 7.4:+34721541 | MS.gene95616:CDS |
| ATGGAATCATTAAAATGCAT+TGG | 0.524032 | 7.4:+34720636 | MS.gene95616:CDS |
| GACATCCTCTGCATCTGCGC+AGG | 0.526251 | 7.4:+34720827 | MS.gene95616:CDS |
| CATAATAGTGTATTTGTCCA+GGG | 0.526367 | 7.4:-34720764 | None:intergenic |
| TTCTAGGCGGTATTGTCAAA+GGG | 0.527510 | 7.4:+34724107 | MS.gene95616:CDS |
| TCACAGCAAAGCAGCACAAG+TGG | 0.527534 | 7.4:-34723025 | None:intergenic |
| TAAGAAACCGATACGAAAAG+TGG | 0.528713 | 7.4:+34723177 | MS.gene95616:CDS |
| GCAGCACAAGTGGATCCAAA+TGG | 0.530204 | 7.4:-34723015 | None:intergenic |
| GTCGCTGGACTCCGGAAACC+CGG | 0.530556 | 7.4:-34718149 | None:intergenic |
| CTATTTATCTTATCGAGGGA+TGG | 0.531683 | 7.4:+34722465 | MS.gene95616:CDS |
| TGGAAGTGAATCTGACAAAG+AGG | 0.532081 | 7.4:-34724215 | None:intergenic |
| TAACTCTTGAATGGTCATCT+GGG | 0.533292 | 7.4:+34720613 | MS.gene95616:CDS |
| GAAGTAGAAGCTGTAGTTTG+AGG | 0.535734 | 7.4:-34724418 | None:intergenic |
| CTTTAAATGTAATGGCCGGT+TGG | 0.536958 | 7.4:-34722529 | None:intergenic |
| GCGAGAACTGAAGAAGAAGA+TGG | 0.538241 | 7.4:-34716125 | None:intergenic |
| ATTGGTTGGTCGCTGGACTC+CGG | 0.542026 | 7.4:-34718157 | None:intergenic |
| GTAATTGGTGAGCTTGAGCT+AGG | 0.545627 | 7.4:-34722348 | None:intergenic |
| TACTGCCAAGTATAGGAGCA+AGG | 0.547133 | 7.4:+34720703 | MS.gene95616:CDS |
| ATCTTAAAGACTGCTCTGAT+GGG | 0.549270 | 7.4:+34721740 | MS.gene95616:CDS |
| AAAGAATTCCAACAATTGGT+TGG | 0.550006 | 7.4:-34718171 | None:intergenic |
| CGAAAGTGCCATTAAGCGTA+AGG | 0.550013 | 7.4:-34720668 | None:intergenic |
| CTGGCTGTGGGCAATGAATG+TGG | 0.552459 | 7.4:+34721613 | MS.gene95616:CDS |
| ACTTCCTTACAAATACTTGG+AGG | 0.553928 | 7.4:+34717064 | MS.gene95616:CDS |
| ATTATAATATACAGTTATGT+CGG | 0.554827 | 7.4:+34717673 | MS.gene95616:intron |
| TCTTGAATGGTCATCTGGGA+TGG | 0.556295 | 7.4:+34720617 | MS.gene95616:CDS |
| AGTGGCCGATGAAAAGGAAG+TGG | 0.556924 | 7.4:+34724249 | MS.gene95616:CDS |
| AAATGACCGAAATTGGAGGT+TGG | 0.557233 | 7.4:-34724172 | None:intergenic |
| GTTTCTTGTTTGAGAGGCAA+CGG | 0.558418 | 7.4:-34724753 | None:intergenic |
| TTAACCATGGACAAGTGGCT+GGG | 0.558643 | 7.4:-34721115 | None:intergenic |
| TAATAATCTCTTCGCAAACA+TGG | 0.559287 | 7.4:-34715921 | None:intergenic |
| GATACTATTTATCTTATCGA+GGG | 0.563370 | 7.4:+34722461 | MS.gene95616:CDS |
| TTCCAAATGACCGAAATTGG+AGG | 0.563828 | 7.4:-34724176 | None:intergenic |
| CTGAAAACTAGCTCAATACC+TGG | 0.566842 | 7.4:+34721052 | MS.gene95616:CDS |
| CACAATCTGTCCATAATCAT+CGG | 0.567485 | 7.4:-34723656 | None:intergenic |
| ACTGCCAAGTATAGGAGCAA+GGG | 0.568001 | 7.4:+34720704 | MS.gene95616:CDS |
| TTTGAACAAGAAGCTGAACC+AGG | 0.568438 | 7.4:-34721070 | None:intergenic |
| TTAGCCATAGGTACTAGCAC+TGG | 0.570963 | 7.4:-34720855 | None:intergenic |
| ACAATACCGCCTAGAATCGC+TGG | 0.571926 | 7.4:-34724100 | None:intergenic |
| ATTCCTTTAAATGTAATGGC+CGG | 0.572797 | 7.4:-34722533 | None:intergenic |
| TCGGCCACTACTACCACTGT+TGG | 0.573495 | 7.4:-34724235 | None:intergenic |
| TCAAATTGGCCCTTAACTGG+GGG | 0.574355 | 7.4:+34721088 | MS.gene95616:CDS |
| TTTACCAGATTTGGAACTGG+TGG | 0.575160 | 7.4:+34723567 | MS.gene95616:CDS |
| CAGCACAAGTTTCAGCAGCA+AGG | 0.575593 | 7.4:+34716050 | MS.gene95616:intron |
| GGTATTGTCAAAGGGTTGAA+AGG | 0.577937 | 7.4:+34724115 | MS.gene95616:CDS |
| TGTGTTTCTTGGTGGTGGAA+AGG | 0.578182 | 7.4:+34720036 | MS.gene95616:CDS |
| CTTGTCATTTGATACTTCCG+AGG | 0.579603 | 7.4:-34722861 | None:intergenic |
| GTTAAAGATGGATTAGCCAT+AGG | 0.580992 | 7.4:-34720867 | None:intergenic |
| ACCGCTTTCTCTGTCATCAG+TGG | 0.581441 | 7.4:+34717536 | MS.gene95616:CDS |
| CTGCCAAGTATAGGAGCAAG+GGG | 0.582079 | 7.4:+34720705 | MS.gene95616:CDS |
| ATTGGCGGTGATAACATTGA+AGG | 0.582531 | 7.4:+34717020 | MS.gene95616:CDS |
| GCTTCCGCGGTACTCTTCAA+GGG | 0.583873 | 7.4:-34722896 | None:intergenic |
| AGATAAGTCACAAAGTGATA+GGG | 0.585441 | 7.4:+34724540 | MS.gene95616:intron |
| GGTCAGTTGTTTGTGTATGG+TGG | 0.585640 | 7.4:+34720376 | MS.gene95616:CDS |
| TCCATAATCATCGGAACACA+TGG | 0.587707 | 7.4:-34723647 | None:intergenic |
| TCCCGGTCATTGTCTTGCAA+TGG | 0.588527 | 7.4:+34720320 | MS.gene95616:CDS |
| AAACTCCTGCGCAGATGCAG+AGG | 0.588563 | 7.4:-34720832 | None:intergenic |
| TTGTTGATTGCATTTCAGGA+TGG | 0.588937 | 7.4:+34719977 | MS.gene95616:CDS |
| GTGGAATTATAAAGTGAACA+TGG | 0.590013 | 7.4:+34723618 | MS.gene95616:CDS |
| AGATACTATTTATCTTATCG+AGG | 0.592947 | 7.4:+34722460 | MS.gene95616:CDS |
| CAATGCAGAAAGAAGAATCC+CGG | 0.595689 | 7.4:+34720303 | MS.gene95616:CDS |
| CTAATGATGATGTAAAGCCA+AGG | 0.597325 | 7.4:+34724584 | MS.gene95616:CDS |
| TGAAAATGCGGCATCAGCAG+CGG | 0.598708 | 7.4:-34723954 | None:intergenic |
| ATAAAGTTTGACTCCGAGGA+AGG | 0.599536 | 7.4:+34717721 | MS.gene95616:CDS |
| GGAAGACTTAAGGTGATTGG+CGG | 0.599982 | 7.4:+34717005 | MS.gene95616:CDS |
| AAAGTGATGTAAATAGTCCA+AGG | 0.600594 | 7.4:+34722403 | MS.gene95616:CDS |
| ATAAGACAAGATTGGATGTG+TGG | 0.606078 | 7.4:-34721203 | None:intergenic |
| AGAACGTTGTCGTGAAGACA+AGG | 0.607591 | 7.4:-34723926 | None:intergenic |
| GGAAGTGAATCTGACAAAGA+GGG | 0.610454 | 7.4:-34724214 | None:intergenic |
| TCTTCATGAGAGTTTCCTGA+AGG | 0.614998 | 7.4:-34722438 | None:intergenic |
| ATGGATATCCCCAGAGTGTG+TGG | 0.616612 | 7.4:-34722996 | None:intergenic |
| TTGTTAAGACCATGGAAAGG+AGG | 0.620536 | 7.4:+34725869 | MS.gene95616:CDS |
| CCATGGAAAGGAGGAAATGG+TGG | 0.620933 | 7.4:+34725878 | MS.gene95616:CDS |
| GTCAGATTCACTTCCAACAG+TGG | 0.622879 | 7.4:+34724222 | MS.gene95616:CDS |
| TATTTGCTACATAGAAGGAG+AGG | 0.628298 | 7.4:+34721225 | MS.gene95616:CDS |
| TCAGAGAATAAGCCAGCGCA+CGG | 0.629437 | 7.4:+34725798 | MS.gene95616:intron |
| ATCAAATGACAAGCAGCATG+AGG | 0.630126 | 7.4:+34722871 | MS.gene95616:CDS |
| AGATGATAGCATCACAACCT+CGG | 0.632465 | 7.4:+34722844 | MS.gene95616:intron |
| TTCATCGAAAACTCTAGCTG+AGG | 0.632853 | 7.4:+34720926 | MS.gene95616:CDS |
| TAATGATGATGTAAAGCCAA+GGG | 0.634140 | 7.4:+34724585 | MS.gene95616:CDS |
| GCCACTGATGACAGAGAAAG+CGG | 0.636498 | 7.4:-34717537 | None:intergenic |
| ACTTCCAACAGTGGTAGTAG+TGG | 0.637558 | 7.4:+34724231 | MS.gene95616:CDS |
| ATTGCCCACAGCCAGAAGCA+AGG | 0.639276 | 7.4:-34721605 | None:intergenic |
| AGTTATGTCGGAGATGAGCA+TGG | 0.640292 | 7.4:+34717685 | MS.gene95616:intron |
| TGTGATAAAGTTTGACTCCG+AGG | 0.642851 | 7.4:+34717717 | MS.gene95616:CDS |
| TTCAGAAACCACACACTCTG+GGG | 0.645320 | 7.4:+34722988 | MS.gene95616:CDS |
| TTGTCAGCTAAATTTCTAAG+GGG | 0.648364 | 7.4:+34717769 | MS.gene95616:CDS |
| TGATTATGGACAGATTGTGC+TGG | 0.650059 | 7.4:+34723660 | MS.gene95616:CDS |
| CTGGCCTTTAGAAGGTGCTG+CGG | 0.650245 | 7.4:-34720239 | None:intergenic |
| AACTGCTGTAAATTCATCAG+AGG | 0.652665 | 7.4:+34722952 | MS.gene95616:CDS |
| ACCATTGCAAGACAATGACC+GGG | 0.652887 | 7.4:-34720321 | None:intergenic |
| ATTGTCAAAGGGTTGAAAGG+AGG | 0.661007 | 7.4:+34724118 | MS.gene95616:CDS |
| GCAGTCCATGACGCTCCACA+AGG | 0.663227 | 7.4:+34722048 | MS.gene95616:intron |
| ATTTGAAGAGAATGAAAATG+CGG | 0.663872 | 7.4:-34723966 | None:intergenic |
| CAAGAAACAAGCTTATGGAG+AGG | 0.669710 | 7.4:+34724768 | MS.gene95616:CDS |
| AAACGAGCTTGTTAAGACCA+TGG | 0.673577 | 7.4:+34725861 | MS.gene95616:CDS |
| TGGTGGTGACGAAATTGGAT+CGG | 0.673771 | 7.4:+34720393 | MS.gene95616:CDS |
| TTTCAGTTCCTACAAAACAA+GGG | 0.674185 | 7.4:+34717206 | MS.gene95616:intron |
| AGGGAGAAATTATTTCAAGG+CGG | 0.707967 | 7.4:+34724559 | MS.gene95616:CDS |
| AGCTTGTTAAGACCATGGAA+AGG | 0.710363 | 7.4:+34725866 | MS.gene95616:CDS |
| ACTGTGCCAGCGATTCTAGG+CGG | 0.756920 | 7.4:+34724094 | MS.gene95616:CDS |
| GGAACCCTTGAAGAGTACCG+CGG | 0.763892 | 7.4:+34722892 | MS.gene95616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34715923 | 34725909 | 34715923 | ID=MS.gene95616 |
| chr7.4 | mRNA | 34715923 | 34725909 | 34715923 | ID=MS.gene95616.t1;Parent=MS.gene95616 |
| chr7.4 | exon | 34715923 | 34715970 | 34715923 | ID=MS.gene95616.t1.exon1;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34715923 | 34715970 | 34715923 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34716053 | 34716186 | 34716053 | ID=MS.gene95616.t1.exon2;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34716053 | 34716186 | 34716053 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34717001 | 34717085 | 34717001 | ID=MS.gene95616.t1.exon3;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34717001 | 34717085 | 34717001 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34717212 | 34717265 | 34717212 | ID=MS.gene95616.t1.exon4;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34717212 | 34717265 | 34717212 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34717479 | 34717570 | 34717479 | ID=MS.gene95616.t1.exon5;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34717479 | 34717570 | 34717479 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34717687 | 34717790 | 34717687 | ID=MS.gene95616.t1.exon6;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34717687 | 34717790 | 34717687 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34718143 | 34718218 | 34718143 | ID=MS.gene95616.t1.exon7;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34718143 | 34718218 | 34718143 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34719976 | 34720429 | 34719976 | ID=MS.gene95616.t1.exon8;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34719976 | 34720429 | 34719976 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34720609 | 34720947 | 34720609 | ID=MS.gene95616.t1.exon9;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34720609 | 34720947 | 34720609 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34721040 | 34721246 | 34721040 | ID=MS.gene95616.t1.exon10;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34721040 | 34721246 | 34721040 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34721541 | 34721639 | 34721541 | ID=MS.gene95616.t1.exon11;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34721541 | 34721639 | 34721541 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34721727 | 34721799 | 34721727 | ID=MS.gene95616.t1.exon12;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34721727 | 34721799 | 34721727 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34722052 | 34722179 | 34722052 | ID=MS.gene95616.t1.exon13;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34722052 | 34722179 | 34722052 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34722294 | 34722582 | 34722294 | ID=MS.gene95616.t1.exon14;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34722294 | 34722582 | 34722294 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34722846 | 34723087 | 34722846 | ID=MS.gene95616.t1.exon15;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34722846 | 34723087 | 34722846 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34723172 | 34723296 | 34723172 | ID=MS.gene95616.t1.exon16;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34723172 | 34723296 | 34723172 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34723564 | 34723681 | 34723564 | ID=MS.gene95616.t1.exon17;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34723564 | 34723681 | 34723564 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34723757 | 34723812 | 34723757 | ID=MS.gene95616.t1.exon18;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34723757 | 34723812 | 34723757 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34723910 | 34724003 | 34723910 | ID=MS.gene95616.t1.exon19;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34723910 | 34724003 | 34723910 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34724091 | 34724283 | 34724091 | ID=MS.gene95616.t1.exon20;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34724091 | 34724283 | 34724091 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34724398 | 34724469 | 34724398 | ID=MS.gene95616.t1.exon21;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34724398 | 34724469 | 34724398 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34724542 | 34724651 | 34724542 | ID=MS.gene95616.t1.exon22;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34724542 | 34724651 | 34724542 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34724743 | 34724805 | 34724743 | ID=MS.gene95616.t1.exon23;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34724743 | 34724805 | 34724743 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| chr7.4 | exon | 34725802 | 34725909 | 34725802 | ID=MS.gene95616.t1.exon24;Parent=MS.gene95616.t1 |
| chr7.4 | CDS | 34725802 | 34725909 | 34725802 | ID=cds.MS.gene95616.t1;Parent=MS.gene95616.t1 |
| Gene Sequence |
| Protein sequence |
