Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055400.t1 | XP_013443840.1 | 94.6 | 186 | 10 | 0 | 1 | 186 | 1 | 186 | 1.10E-73 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055400.t1 | Q96316 | 47.6 | 124 | 63 | 1 | 1 | 124 | 1 | 122 | 6.0e-28 | 125.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055400.t1 | A0A072TWJ3 | 94.6 | 186 | 10 | 0 | 1 | 186 | 1 | 186 | 8.0e-74 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055400 | MS.gene99141 | 0.806 | 1.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055400.t1 | MTR_8g007020 | 96.774 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 4.61e-130 | 362 |
| MS.gene055400.t1 | MTR_8g007035 | 80.808 | 198 | 26 | 1 | 1 | 186 | 1 | 198 | 2.05e-96 | 278 |
| MS.gene055400.t1 | MTR_3g099580 | 54.622 | 119 | 51 | 2 | 2 | 120 | 5 | 120 | 7.11e-35 | 121 |
| MS.gene055400.t1 | MTR_3g099570 | 47.482 | 139 | 66 | 3 | 2 | 136 | 5 | 140 | 5.28e-33 | 116 |
| MS.gene055400.t1 | MTR_3g099540 | 48.462 | 130 | 63 | 3 | 2 | 130 | 5 | 131 | 3.37e-32 | 113 |
| MS.gene055400.t1 | MTR_3g099980 | 52.212 | 113 | 51 | 3 | 10 | 120 | 11 | 122 | 2.51e-29 | 108 |
| MS.gene055400.t1 | MTR_3g099680 | 52.212 | 113 | 51 | 3 | 10 | 120 | 11 | 122 | 2.55e-29 | 108 |
| MS.gene055400.t1 | MTR_5g006040 | 36.913 | 149 | 87 | 4 | 9 | 152 | 11 | 157 | 6.55e-29 | 106 |
| MS.gene055400.t1 | MTR_2g088990 | 42.975 | 121 | 64 | 3 | 8 | 127 | 11 | 127 | 8.07e-28 | 104 |
| MS.gene055400.t1 | MTR_1g104800 | 34.228 | 149 | 93 | 3 | 11 | 156 | 12 | 158 | 4.86e-27 | 101 |
| MS.gene055400.t1 | MTR_6g080660 | 39.344 | 122 | 69 | 2 | 6 | 124 | 7 | 126 | 1.55e-24 | 95.5 |
| MS.gene055400.t1 | MTR_4g114870 | 44.030 | 134 | 63 | 5 | 10 | 133 | 10 | 141 | 1.17e-23 | 96.3 |
| MS.gene055400.t1 | MTR_4g114870 | 45.098 | 102 | 49 | 4 | 24 | 120 | 191 | 290 | 3.43e-20 | 86.7 |
| MS.gene055400.t1 | MTR_1g090190 | 35.878 | 131 | 78 | 2 | 21 | 147 | 20 | 148 | 1.21e-23 | 92.4 |
| MS.gene055400.t1 | MTR_6g023760 | 47.573 | 103 | 51 | 2 | 19 | 120 | 21 | 121 | 2.51e-23 | 91.7 |
| MS.gene055400.t1 | MTR_1g112700 | 37.500 | 152 | 85 | 6 | 2 | 147 | 9 | 156 | 2.93e-23 | 91.7 |
| MS.gene055400.t1 | MTR_2g043730 | 42.500 | 120 | 61 | 5 | 3 | 119 | 9 | 123 | 5.22e-21 | 84.0 |
| MS.gene055400.t1 | MTR_7g086100 | 43.269 | 104 | 56 | 2 | 19 | 121 | 21 | 122 | 5.23e-21 | 86.7 |
| MS.gene055400.t1 | MTR_7g086160 | 38.655 | 119 | 71 | 2 | 5 | 122 | 8 | 125 | 6.97e-21 | 84.7 |
| MS.gene055400.t1 | MTR_7g086140 | 38.400 | 125 | 69 | 3 | 5 | 122 | 1 | 124 | 1.38e-20 | 84.0 |
| MS.gene055400.t1 | MTR_7g086190 | 38.400 | 125 | 69 | 3 | 5 | 122 | 1 | 124 | 1.38e-20 | 84.0 |
| MS.gene055400.t1 | MTR_3g089005 | 40.000 | 120 | 66 | 4 | 1 | 119 | 10 | 124 | 3.80e-20 | 82.0 |
| MS.gene055400.t1 | MTR_1g105130 | 36.937 | 111 | 68 | 2 | 12 | 121 | 13 | 122 | 7.59e-20 | 82.0 |
| MS.gene055400.t1 | MTR_1g105120 | 36.937 | 111 | 68 | 2 | 12 | 121 | 13 | 122 | 7.59e-20 | 82.0 |
| MS.gene055400.t1 | MTR_8g089110 | 41.525 | 118 | 58 | 5 | 8 | 119 | 7 | 119 | 1.81e-19 | 80.1 |
| MS.gene055400.t1 | MTR_8g086360 | 30.769 | 195 | 118 | 6 | 1 | 187 | 1 | 186 | 3.85e-19 | 80.9 |
| MS.gene055400.t1 | MTR_3g089035 | 44.231 | 104 | 52 | 4 | 19 | 121 | 28 | 126 | 4.30e-19 | 79.3 |
| MS.gene055400.t1 | MTR_1g090420 | 29.487 | 156 | 102 | 4 | 5 | 156 | 11 | 162 | 3.69e-18 | 79.0 |
| MS.gene055400.t1 | MTR_4g078410 | 33.742 | 163 | 99 | 4 | 21 | 176 | 22 | 182 | 8.44e-18 | 77.4 |
| MS.gene055400.t1 | MTR_2g043790 | 45.098 | 102 | 50 | 4 | 19 | 119 | 2 | 98 | 1.08e-17 | 74.7 |
| MS.gene055400.t1 | MTR_7g086090 | 40.777 | 103 | 58 | 2 | 19 | 120 | 21 | 121 | 2.41e-17 | 77.4 |
| MS.gene055400.t1 | MTR_4g067200 | 39.640 | 111 | 58 | 4 | 21 | 124 | 25 | 133 | 3.98e-17 | 75.1 |
| MS.gene055400.t1 | MTR_4g066110 | 39.640 | 111 | 58 | 4 | 21 | 124 | 25 | 133 | 3.98e-17 | 75.1 |
| MS.gene055400.t1 | MTR_0334s0010 | 36.364 | 121 | 67 | 4 | 10 | 122 | 9 | 127 | 7.32e-17 | 75.1 |
| MS.gene055400.t1 | MTR_6g083240 | 38.298 | 141 | 69 | 6 | 21 | 145 | 24 | 162 | 8.05e-17 | 74.7 |
| MS.gene055400.t1 | MTR_7g086220 | 33.333 | 123 | 79 | 3 | 1 | 122 | 3 | 123 | 9.00e-17 | 73.9 |
| MS.gene055400.t1 | MTR_7g086280 | 36.441 | 118 | 67 | 3 | 4 | 120 | 11 | 121 | 1.75e-16 | 73.6 |
| MS.gene055400.t1 | MTR_7g086230 | 38.835 | 103 | 60 | 2 | 19 | 120 | 21 | 121 | 1.97e-16 | 73.6 |
| MS.gene055400.t1 | MTR_8g463180 | 36.842 | 133 | 73 | 6 | 6 | 130 | 5 | 134 | 2.01e-16 | 75.9 |
| MS.gene055400.t1 | MTR_2g101300 | 34.752 | 141 | 75 | 4 | 21 | 156 | 24 | 152 | 3.37e-16 | 73.2 |
| MS.gene055400.t1 | MTR_1g014120 | 33.557 | 149 | 90 | 4 | 1 | 142 | 1 | 147 | 6.30e-16 | 72.4 |
| MS.gene055400.t1 | MTR_2g090580 | 34.831 | 178 | 91 | 8 | 21 | 176 | 24 | 198 | 1.29e-15 | 72.0 |
| MS.gene055400.t1 | MTR_6g013420 | 33.094 | 139 | 79 | 6 | 10 | 145 | 24 | 151 | 6.39e-15 | 69.7 |
| MS.gene055400.t1 | MTR_2g079030 | 35.616 | 146 | 83 | 5 | 21 | 157 | 22 | 165 | 6.82e-15 | 72.4 |
| MS.gene055400.t1 | MTR_6g013200 | 30.189 | 159 | 96 | 6 | 3 | 149 | 8 | 163 | 1.09e-14 | 68.9 |
| MS.gene055400.t1 | MTR_4g130780 | 32.787 | 122 | 74 | 4 | 5 | 120 | 10 | 129 | 1.10e-14 | 68.9 |
| MS.gene055400.t1 | MTR_4g007250 | 35.644 | 101 | 61 | 3 | 21 | 120 | 26 | 123 | 1.18e-14 | 68.6 |
| MS.gene055400.t1 | MTR_8g088830 | 40.594 | 101 | 53 | 5 | 21 | 119 | 25 | 120 | 3.89e-14 | 66.2 |
| MS.gene055400.t1 | MTR_3g105930 | 34.307 | 137 | 83 | 5 | 39 | 174 | 47 | 177 | 4.06e-14 | 67.4 |
| MS.gene055400.t1 | MTR_6g022170 | 33.058 | 121 | 73 | 4 | 21 | 136 | 31 | 148 | 1.25e-13 | 65.9 |
| MS.gene055400.t1 | MTR_4g124280 | 33.333 | 144 | 84 | 5 | 20 | 154 | 21 | 161 | 2.14e-13 | 66.6 |
| MS.gene055400.t1 | MTR_4g081100 | 29.187 | 209 | 109 | 7 | 8 | 183 | 16 | 218 | 2.70e-13 | 65.9 |
| MS.gene055400.t1 | MTR_2g090575 | 36.196 | 163 | 86 | 8 | 9 | 156 | 8 | 167 | 8.41e-13 | 65.9 |
| MS.gene055400.t1 | MTR_2g025580 | 35.644 | 101 | 57 | 3 | 24 | 120 | 27 | 123 | 9.24e-13 | 63.5 |
| MS.gene055400.t1 | MTR_6g013170 | 29.630 | 162 | 94 | 5 | 26 | 186 | 33 | 175 | 2.27e-12 | 62.8 |
| MS.gene055400.t1 | MTR_4g130800 | 32.000 | 125 | 77 | 4 | 5 | 123 | 10 | 132 | 3.04e-12 | 63.9 |
| MS.gene055400.t1 | MTR_8g099220 | 37.143 | 105 | 58 | 4 | 21 | 120 | 26 | 127 | 1.16e-11 | 59.7 |
| MS.gene055400.t1 | MTR_2g083250 | 33.036 | 112 | 66 | 3 | 21 | 125 | 23 | 132 | 1.56e-11 | 61.6 |
| MS.gene055400.t1 | MTR_4g112310 | 30.769 | 117 | 75 | 3 | 38 | 154 | 2 | 112 | 2.55e-11 | 58.9 |
| MS.gene055400.t1 | MTR_8g095020 | 31.496 | 127 | 74 | 4 | 5 | 122 | 1 | 123 | 7.08e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055400.t1 | AT3G60270 | 55.140 | 107 | 46 | 1 | 17 | 123 | 19 | 123 | 1.88e-35 | 123 |
| MS.gene055400.t1 | AT2G44790 | 54.630 | 108 | 45 | 1 | 17 | 124 | 25 | 128 | 2.13e-35 | 123 |
| MS.gene055400.t1 | AT3G60280 | 52.336 | 107 | 49 | 1 | 17 | 123 | 17 | 121 | 1.08e-33 | 119 |
| MS.gene055400.t1 | AT2G32300 | 50.000 | 118 | 52 | 3 | 21 | 133 | 23 | 138 | 1.72e-31 | 115 |
| MS.gene055400.t1 | AT2G32300 | 46.099 | 141 | 69 | 4 | 21 | 159 | 53 | 188 | 3.05e-31 | 115 |
| MS.gene055400.t1 | AT1G72230 | 43.537 | 147 | 74 | 2 | 12 | 158 | 11 | 148 | 1.33e-28 | 105 |
| MS.gene055400.t1 | AT3G27200 | 41.803 | 122 | 68 | 2 | 1 | 121 | 3 | 122 | 1.26e-27 | 102 |
| MS.gene055400.t1 | AT2G31050 | 42.029 | 138 | 71 | 4 | 7 | 137 | 7 | 142 | 2.44e-26 | 100 |
| MS.gene055400.t1 | AT5G07475 | 36.774 | 155 | 91 | 2 | 3 | 152 | 4 | 156 | 2.68e-26 | 99.8 |
| MS.gene055400.t1 | AT2G26720 | 38.971 | 136 | 74 | 4 | 9 | 137 | 9 | 142 | 2.15e-24 | 95.1 |
| MS.gene055400.t1 | AT5G26330 | 36.290 | 124 | 74 | 3 | 1 | 121 | 1 | 122 | 2.59e-24 | 94.4 |
| MS.gene055400.t1 | AT1G22480 | 51.064 | 94 | 44 | 1 | 32 | 125 | 27 | 118 | 5.71e-23 | 90.5 |
| MS.gene055400.t1 | AT2G25060 | 32.609 | 184 | 98 | 6 | 8 | 185 | 15 | 178 | 2.22e-20 | 84.0 |
| MS.gene055400.t1 | AT3G17675 | 38.614 | 101 | 59 | 2 | 21 | 120 | 29 | 127 | 2.57e-20 | 82.4 |
| MS.gene055400.t1 | AT5G20230 | 38.889 | 126 | 67 | 4 | 23 | 140 | 24 | 147 | 5.64e-19 | 80.9 |
| MS.gene055400.t1 | AT4G31840 | 32.812 | 192 | 99 | 10 | 2 | 185 | 3 | 172 | 1.82e-18 | 79.0 |
| MS.gene055400.t1 | AT1G79800 | 36.885 | 122 | 69 | 3 | 23 | 139 | 33 | 151 | 2.55e-18 | 79.0 |
| MS.gene055400.t1 | AT2G02850 | 41.071 | 112 | 60 | 4 | 11 | 121 | 23 | 129 | 2.71e-18 | 77.4 |
| MS.gene055400.t1 | AT4G28365 | 33.742 | 163 | 91 | 6 | 9 | 156 | 12 | 172 | 6.37e-17 | 75.5 |
| MS.gene055400.t1 | AT5G53870 | 33.333 | 159 | 89 | 5 | 9 | 155 | 10 | 163 | 1.21e-16 | 77.0 |
| MS.gene055400.t1 | AT5G53870 | 33.333 | 159 | 89 | 5 | 9 | 155 | 10 | 163 | 1.69e-16 | 76.6 |
| MS.gene055400.t1 | AT4G27520 | 36.000 | 125 | 71 | 4 | 6 | 123 | 9 | 131 | 1.80e-16 | 76.3 |
| MS.gene055400.t1 | AT1G64640 | 33.333 | 135 | 77 | 3 | 21 | 151 | 30 | 155 | 3.04e-16 | 73.6 |
| MS.gene055400.t1 | AT4G30590 | 32.877 | 146 | 89 | 5 | 41 | 185 | 50 | 187 | 3.15e-15 | 70.9 |
| MS.gene055400.t1 | AT5G15350 | 29.518 | 166 | 88 | 5 | 10 | 173 | 15 | 153 | 1.48e-14 | 68.6 |
| MS.gene055400.t1 | AT3G20570 | 35.156 | 128 | 75 | 5 | 1 | 122 | 5 | 130 | 1.64e-14 | 68.9 |
| MS.gene055400.t1 | AT5G57920 | 32.653 | 98 | 63 | 2 | 39 | 135 | 43 | 138 | 1.18e-13 | 66.2 |
| MS.gene055400.t1 | AT5G57920 | 32.323 | 99 | 64 | 2 | 39 | 136 | 75 | 171 | 1.55e-13 | 66.6 |
| MS.gene055400.t1 | AT5G57920 | 32.653 | 98 | 63 | 2 | 39 | 135 | 42 | 137 | 2.03e-13 | 65.9 |
| MS.gene055400.t1 | AT3G53330 | 34.400 | 125 | 76 | 4 | 20 | 140 | 184 | 306 | 2.48e-13 | 67.4 |
| MS.gene055400.t1 | AT4G12880 | 34.211 | 114 | 69 | 4 | 10 | 120 | 15 | 125 | 4.00e-13 | 63.9 |
| MS.gene055400.t1 | AT3G18590 | 34.959 | 123 | 71 | 3 | 5 | 121 | 8 | 127 | 1.21e-12 | 63.5 |
| MS.gene055400.t1 | AT4G32490 | 36.275 | 102 | 60 | 3 | 24 | 122 | 31 | 130 | 3.58e-12 | 63.2 |
| MS.gene055400.t1 | AT1G48940 | 32.500 | 120 | 74 | 2 | 5 | 118 | 7 | 125 | 6.61e-12 | 61.6 |
| MS.gene055400.t1 | AT1G17800 | 34.400 | 125 | 72 | 6 | 4 | 122 | 18 | 138 | 1.80e-11 | 59.7 |
| MS.gene055400.t1 | AT5G25090 | 27.907 | 129 | 84 | 4 | 2 | 123 | 3 | 129 | 2.29e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTCAGCAATGATTT+TGG | 0.095923 | 8.1:-86640021 | MS.gene055400:CDS |
| TCCATCATCATAGCTCTTTA+TGG | 0.186656 | 8.1:+86640313 | None:intergenic |
| GATTATACCAAATGGGCTTC+TGG | 0.307591 | 8.1:-86640629 | MS.gene055400:CDS |
| CTATGATGATGGAGATTCTA+AGG | 0.371455 | 8.1:-86640303 | MS.gene055400:CDS |
| CCATCACCACCAAAGGATAA+TGG | 0.381313 | 8.1:-86640089 | MS.gene055400:CDS |
| CCATTATCCTTTGGTGGTGA+TGG | 0.391531 | 8.1:+86640089 | None:intergenic |
| AAGGAGTTGATTATACCAAA+TGG | 0.424289 | 8.1:-86640637 | MS.gene055400:CDS |
| GGAGTTGATGGTGTGGTTGA+TGG | 0.435848 | 8.1:+86640134 | None:intergenic |
| GGTGCCACTTGGAGTTGGGG+TGG | 0.440747 | 8.1:+86640175 | None:intergenic |
| CTAACAGCTCCATTATCCTT+TGG | 0.447592 | 8.1:+86640080 | None:intergenic |
| TTTGTCTCTGAAGGAGTTGA+TGG | 0.448936 | 8.1:+86640122 | None:intergenic |
| AAGGTTGCATTGACTAAAGC+AGG | 0.472415 | 8.1:-86640284 | MS.gene055400:CDS |
| AAATCAGTTGCAAATGCATA+AGG | 0.473584 | 8.1:+86640689 | None:intergenic |
| CATCAACTTCATTCACTTGG+TGG | 0.484952 | 8.1:+86640369 | None:intergenic |
| AGGAGTTGATTATACCAAAT+GGG | 0.490730 | 8.1:-86640636 | MS.gene055400:CDS |
| TTCAAAGTTGGTGATAACTT+AGG | 0.497746 | 8.1:-86640599 | MS.gene055400:intron |
| CCAGGTCATTGTACTAGTAC+TGG | 0.514602 | 8.1:-86640236 | MS.gene055400:CDS |
| GTAGTTGAGTTTGTCTCTGA+AGG | 0.518680 | 8.1:+86640113 | None:intergenic |
| TTTGCAACTGATTTCACTGT+TGG | 0.522709 | 8.1:-86640680 | MS.gene055400:CDS |
| ACAGCTCCATTATCCTTTGG+TGG | 0.526576 | 8.1:+86640083 | None:intergenic |
| AACTTCATTCACTTGGTGGA+AGG | 0.528629 | 8.1:+86640373 | None:intergenic |
| ACCATAAAGAGCTATGATGA+TGG | 0.545401 | 8.1:-86640314 | MS.gene055400:CDS |
| CATCAAAAGACTAACACCAT+TGG | 0.545497 | 8.1:+86640052 | None:intergenic |
| TTTCATCAACTTCATTCACT+TGG | 0.552459 | 8.1:+86640366 | None:intergenic |
| GTGAATGAAGTTGATGAAAG+TGG | 0.554625 | 8.1:-86640362 | MS.gene055400:CDS |
| TTCACTGTTGGTGATGCCAG+TGG | 0.555149 | 8.1:-86640668 | MS.gene055400:CDS |
| AACTACTCCATCACCACCAA+AGG | 0.566009 | 8.1:-86640096 | MS.gene055400:CDS |
| CTGTTGGTGATGCCAGTGGA+TGG | 0.566622 | 8.1:-86640664 | MS.gene055400:CDS |
| AACTCCTTGAGTCCATCCAC+TGG | 0.575230 | 8.1:+86640652 | None:intergenic |
| TACTTCATATGTCCCACACC+AGG | 0.575563 | 8.1:-86640254 | MS.gene055400:CDS |
| ACTAGTACAATGACCTGGTG+TGG | 0.596881 | 8.1:+86640241 | None:intergenic |
| CTCTGAAGGAGTTGATGGTG+TGG | 0.606388 | 8.1:+86640127 | None:intergenic |
| AGCACCACCCCAACTCCAAG+TGG | 0.615986 | 8.1:-86640179 | MS.gene055400:CDS |
| GATGCCAGTGGATGGACTCA+AGG | 0.625162 | 8.1:-86640656 | MS.gene055400:CDS |
| CTAGTACAATGACCTGGTGT+GGG | 0.628674 | 8.1:+86640242 | None:intergenic |
| CCAGTACTAGTACAATGACC+TGG | 0.660294 | 8.1:+86640236 | None:intergenic |
| GGAGCTGTTAGTGTTTCCAA+TGG | 0.664368 | 8.1:-86640068 | MS.gene055400:CDS |
| GGTCATTGTACTAGTACTGG+TGG | 0.665208 | 8.1:-86640233 | MS.gene055400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAACAGTGTTTAAATA+TGG | - | chr8.1:86640346-86640365 | MS.gene055400:CDS | 20.0% |
| !!! | TATATCAAACATTTTCAATG+TGG | + | chr8.1:86640242-86640261 | None:intergenic | 20.0% |
| !! | ATCTTTCTTTGTTCTTTTGT+TGG | - | chr8.1:86640027-86640046 | MS.gene055400:CDS | 25.0% |
| !! | TTTGTTTCAGCAATGATTTT+GGG | - | chr8.1:86640724-86640743 | MS.gene055400:CDS | 25.0% |
| AAATCAGTTGCAAATGCATA+AGG | + | chr8.1:86640058-86640077 | None:intergenic | 30.0% | |
| TCTGGAAAAACATTCAAAGT+TGG | - | chr8.1:86640133-86640152 | MS.gene055400:CDS | 30.0% | |
| TTTCATCAACTTCATTCACT+TGG | + | chr8.1:86640381-86640400 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGATTATACCAAA+TGG | - | chr8.1:86640107-86640126 | MS.gene055400:CDS | 30.0% |
| ! | AGGAGTTGATTATACCAAAT+GGG | - | chr8.1:86640108-86640127 | MS.gene055400:CDS | 30.0% |
| !! | CTTTGTTTCAGCAATGATTT+TGG | - | chr8.1:86640723-86640742 | MS.gene055400:CDS | 30.0% |
| !! | TTCAAAGTTGGTGATAACTT+AGG | - | chr8.1:86640145-86640164 | MS.gene055400:CDS | 30.0% |
| !!! | AATGGTGTTAGTCTTTTGAT+GGG | - | chr8.1:86640694-86640713 | MS.gene055400:CDS | 30.0% |
| ACCATAAAGAGCTATGATGA+TGG | - | chr8.1:86640430-86640449 | MS.gene055400:intron | 35.0% | |
| CATCAAAAGACTAACACCAT+TGG | + | chr8.1:86640695-86640714 | None:intergenic | 35.0% | |
| TCCATCATCATAGCTCTTTA+TGG | + | chr8.1:86640434-86640453 | None:intergenic | 35.0% | |
| ! | TTGATGGAGATTTTGTTGGT+GGG | + | chr8.1:86640597-86640616 | None:intergenic | 35.0% |
| ! | TTTGCAACTGATTTCACTGT+TGG | - | chr8.1:86640064-86640083 | MS.gene055400:CDS | 35.0% |
| !! | CTATGATGATGGAGATTCTA+AGG | - | chr8.1:86640441-86640460 | MS.gene055400:intron | 35.0% |
| !! | GTGAATGAAGTTGATGAAAG+TGG | - | chr8.1:86640382-86640401 | MS.gene055400:CDS | 35.0% |
| !!! | AGCAATGATTTTGGGTTTGA+TGG | - | chr8.1:86640732-86640751 | MS.gene055400:CDS | 35.0% |
| !!! | CAATGGTGTTAGTCTTTTGA+TGG | - | chr8.1:86640693-86640712 | MS.gene055400:CDS | 35.0% |
| CATCAACTTCATTCACTTGG+TGG | + | chr8.1:86640378-86640397 | None:intergenic | 40.0% | |
| CTAACAGCTCCATTATCCTT+TGG | + | chr8.1:86640667-86640686 | None:intergenic | 40.0% | |
| GTAGTTGAGTTTGTCTCTGA+AGG | + | chr8.1:86640634-86640653 | None:intergenic | 40.0% | |
| ! | AACTTCATTCACTTGGTGGA+AGG | + | chr8.1:86640374-86640393 | None:intergenic | 40.0% |
| ! | GATTATACCAAATGGGCTTC+TGG | - | chr8.1:86640115-86640134 | MS.gene055400:CDS | 40.0% |
| ! | TGATGGAGATTTTGTTGGTG+GGG | + | chr8.1:86640596-86640615 | None:intergenic | 40.0% |
| ! | TGTTTTTCCAGAAGCCCATT+TGG | + | chr8.1:86640125-86640144 | None:intergenic | 40.0% |
| ! | TTTGTCTCTGAAGGAGTTGA+TGG | + | chr8.1:86640625-86640644 | None:intergenic | 40.0% |
| !! | AAGGTTGCATTGACTAAAGC+AGG | - | chr8.1:86640460-86640479 | MS.gene055400:intron | 40.0% |
| !! | GTTGATGGAGATTTTGTTGG+TGG | + | chr8.1:86640598-86640617 | None:intergenic | 40.0% |
| !!! | GTGGTTGATGGAGATTTTGT+TGG | + | chr8.1:86640601-86640620 | None:intergenic | 40.0% |
| AACTACTCCATCACCACCAA+AGG | - | chr8.1:86640648-86640667 | MS.gene055400:CDS | 45.0% | |
| ACAGCTCCATTATCCTTTGG+TGG | + | chr8.1:86640664-86640683 | None:intergenic | 45.0% | |
| ACTAGTACAATGACCTGGTG+TGG | + | chr8.1:86640506-86640525 | None:intergenic | 45.0% | |
| CCAGGTCATTGTACTAGTAC+TGG | - | chr8.1:86640508-86640527 | MS.gene055400:intron | 45.0% | |
| CCAGTACTAGTACAATGACC+TGG | + | chr8.1:86640511-86640530 | None:intergenic | 45.0% | |
| CCATCACCACCAAAGGATAA+TGG | - | chr8.1:86640655-86640674 | MS.gene055400:CDS | 45.0% | |
| CTAGTACAATGACCTGGTGT+GGG | + | chr8.1:86640505-86640524 | None:intergenic | 45.0% | |
| GGAGCTGTTAGTGTTTCCAA+TGG | - | chr8.1:86640676-86640695 | MS.gene055400:CDS | 45.0% | |
| TACTTCATATGTCCCACACC+AGG | - | chr8.1:86640490-86640509 | MS.gene055400:intron | 45.0% | |
| ! | GGTCATTGTACTAGTACTGG+TGG | - | chr8.1:86640511-86640530 | MS.gene055400:intron | 45.0% |
| !! | ATGGAGATTTTGTTGGTGGG+GGG | + | chr8.1:86640594-86640613 | None:intergenic | 45.0% |
| !! | CCATTATCCTTTGGTGGTGA+TGG | + | chr8.1:86640658-86640677 | None:intergenic | 45.0% |
| !! | GATGGAGATTTTGTTGGTGG+GGG | + | chr8.1:86640595-86640614 | None:intergenic | 45.0% |
| AACTCCTTGAGTCCATCCAC+TGG | + | chr8.1:86640095-86640114 | None:intergenic | 50.0% | |
| !! | CTCTGAAGGAGTTGATGGTG+TGG | + | chr8.1:86640620-86640639 | None:intergenic | 50.0% |
| !! | GGAGTTGATGGTGTGGTTGA+TGG | + | chr8.1:86640613-86640632 | None:intergenic | 50.0% |
| !! | TGGAGATTTTGTTGGTGGGG+GGG | + | chr8.1:86640593-86640612 | None:intergenic | 50.0% |
| !! | TTCACTGTTGGTGATGCCAG+TGG | - | chr8.1:86640076-86640095 | MS.gene055400:CDS | 50.0% |
| ! | GATGCCAGTGGATGGACTCA+AGG | - | chr8.1:86640088-86640107 | MS.gene055400:CDS | 55.0% |
| !! | CTGTTGGTGATGCCAGTGGA+TGG | - | chr8.1:86640080-86640099 | MS.gene055400:CDS | 55.0% |
| AGCACCACCCCAACTCCAAG+TGG | - | chr8.1:86640565-86640584 | MS.gene055400:intron | 60.0% | |
| !! | GGGGGGTGCCACTTGGAGTT+GGG | + | chr8.1:86640576-86640595 | None:intergenic | 65.0% |
| !! | GGGGGTGCCACTTGGAGTTG+GGG | + | chr8.1:86640575-86640594 | None:intergenic | 65.0% |
| !! | GGTGCCACTTGGAGTTGGGG+TGG | + | chr8.1:86640572-86640591 | None:intergenic | 65.0% |
| !! | GGGGGGGTGCCACTTGGAGT+TGG | + | chr8.1:86640577-86640596 | None:intergenic | 70.0% |
| !! | GTTGGTGGGGGGGTGCCACT+TGG | + | chr8.1:86640583-86640602 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 86640007 | 86640759 | 86640007 | ID=MS.gene055400 |
| chr8.1 | mRNA | 86640007 | 86640759 | 86640007 | ID=MS.gene055400.t1;Parent=MS.gene055400 |
| chr8.1 | exon | 86640600 | 86640759 | 86640600 | ID=MS.gene055400.t1.exon1;Parent=MS.gene055400.t1 |
| chr8.1 | CDS | 86640600 | 86640759 | 86640600 | ID=cds.MS.gene055400.t1;Parent=MS.gene055400.t1 |
| chr8.1 | exon | 86640007 | 86640410 | 86640007 | ID=MS.gene055400.t1.exon2;Parent=MS.gene055400.t1 |
| chr8.1 | CDS | 86640007 | 86640410 | 86640007 | ID=cds.MS.gene055400.t1;Parent=MS.gene055400.t1 |
| Gene Sequence |
| Protein sequence |
