Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99141.t1 | XP_013443840.1 | 89 | 191 | 13 | 2 | 1 | 191 | 1 | 183 | 2.20E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99141.t1 | Q96316 | 48.0 | 127 | 61 | 2 | 1 | 127 | 1 | 122 | 4.7e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99141.t1 | A0A072TWJ3 | 89.0 | 191 | 13 | 2 | 1 | 191 | 1 | 183 | 1.6e-68 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene99141 | 0.812128 | 4.96E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene99141 | 0.820456 | 6.79E-53 | -1.69E-46 |
| MS.gene052494 | MS.gene99141 | 0.824523 | 7.71E-54 | -1.69E-46 |
| MS.gene055124 | MS.gene99141 | 0.807218 | 5.63E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene99141 | 0.80547 | 1.31E-49 | -1.69E-46 |
| MS.gene055400 | MS.gene99141 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene055401 | MS.gene99141 | 0.830836 | 2.35E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene99141 | -0.803112 | 4.07E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene99141 | 0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene057291 | MS.gene99141 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene057293 | MS.gene99141 | 0.811336 | 7.37E-51 | -1.69E-46 |
| MS.gene058068 | MS.gene99141 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene99141 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene058109 | MS.gene99141 | 0.800575 | 1.35E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene99141 | 0.830794 | 2.40E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene99141 | 0.829162 | 6.01E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene99141 | 0.82646 | 2.68E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene99141 | -0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene059045 | MS.gene99141 | 0.844242 | 8.54E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99141.t1 | MTR_8g007020 | 91.623 | 191 | 8 | 2 | 1 | 191 | 1 | 183 | 6.59e-108 | 311 |
| MS.gene99141.t1 | MTR_8g007035 | 84.848 | 198 | 20 | 2 | 1 | 191 | 1 | 195 | 1.00e-88 | 263 |
| MS.gene99141.t1 | MTR_3g099570 | 46.479 | 142 | 66 | 4 | 2 | 139 | 5 | 140 | 8.51e-30 | 111 |
| MS.gene99141.t1 | MTR_3g099540 | 47.368 | 133 | 63 | 4 | 2 | 133 | 5 | 131 | 6.47e-29 | 107 |
| MS.gene99141.t1 | MTR_3g099580 | 46.497 | 157 | 74 | 5 | 2 | 158 | 5 | 151 | 1.50e-26 | 103 |
| MS.gene99141.t1 | MTR_3g099980 | 50.862 | 116 | 51 | 4 | 10 | 123 | 11 | 122 | 4.67e-26 | 102 |
| MS.gene99141.t1 | MTR_3g099680 | 50.862 | 116 | 51 | 4 | 10 | 123 | 11 | 122 | 6.27e-26 | 102 |
| MS.gene99141.t1 | MTR_2g088990 | 38.926 | 149 | 83 | 4 | 8 | 155 | 11 | 152 | 1.04e-25 | 102 |
| MS.gene99141.t1 | MTR_5g006040 | 37.107 | 159 | 84 | 6 | 9 | 162 | 11 | 158 | 3.97e-25 | 99.4 |
| MS.gene99141.t1 | MTR_1g104800 | 32.515 | 163 | 95 | 5 | 11 | 170 | 12 | 162 | 2.25e-23 | 94.7 |
| MS.gene99141.t1 | MTR_6g080660 | 38.400 | 125 | 69 | 3 | 6 | 127 | 7 | 126 | 5.41e-21 | 89.0 |
| MS.gene99141.t1 | MTR_4g114870 | 43.066 | 137 | 63 | 6 | 10 | 136 | 10 | 141 | 1.38e-20 | 90.9 |
| MS.gene99141.t1 | MTR_4g114870 | 43.810 | 105 | 49 | 5 | 24 | 123 | 191 | 290 | 4.94e-17 | 80.9 |
| MS.gene99141.t1 | MTR_6g023760 | 46.226 | 106 | 51 | 3 | 19 | 123 | 21 | 121 | 5.44e-20 | 85.5 |
| MS.gene99141.t1 | MTR_1g090190 | 34.091 | 132 | 82 | 2 | 21 | 152 | 20 | 146 | 6.61e-20 | 85.5 |
| MS.gene99141.t1 | MTR_8g086360 | 31.683 | 202 | 121 | 6 | 1 | 196 | 1 | 191 | 1.31e-19 | 84.7 |
| MS.gene99141.t1 | MTR_1g112700 | 36.842 | 152 | 83 | 7 | 2 | 147 | 9 | 153 | 3.98e-19 | 83.2 |
| MS.gene99141.t1 | MTR_2g043730 | 41.463 | 123 | 61 | 6 | 3 | 122 | 9 | 123 | 4.52e-18 | 79.0 |
| MS.gene99141.t1 | MTR_7g086100 | 39.344 | 122 | 63 | 4 | 4 | 124 | 11 | 122 | 4.99e-18 | 81.6 |
| MS.gene99141.t1 | MTR_7g086160 | 37.705 | 122 | 71 | 3 | 5 | 125 | 8 | 125 | 1.84e-17 | 78.2 |
| MS.gene99141.t1 | MTR_1g090420 | 29.940 | 167 | 105 | 5 | 5 | 164 | 11 | 172 | 2.20e-17 | 79.3 |
| MS.gene99141.t1 | MTR_7g086140 | 37.705 | 122 | 70 | 4 | 5 | 125 | 8 | 124 | 8.41e-17 | 76.6 |
| MS.gene99141.t1 | MTR_7g086190 | 37.705 | 122 | 70 | 4 | 5 | 125 | 8 | 124 | 8.41e-17 | 76.6 |
| MS.gene99141.t1 | MTR_3g089035 | 42.991 | 107 | 52 | 5 | 19 | 124 | 28 | 126 | 1.24e-16 | 75.1 |
| MS.gene99141.t1 | MTR_8g089110 | 40.336 | 119 | 60 | 6 | 5 | 122 | 11 | 119 | 1.43e-16 | 74.7 |
| MS.gene99141.t1 | MTR_1g105130 | 35.965 | 114 | 68 | 3 | 12 | 124 | 13 | 122 | 2.54e-16 | 75.1 |
| MS.gene99141.t1 | MTR_1g105120 | 35.965 | 114 | 68 | 3 | 12 | 124 | 13 | 122 | 2.54e-16 | 75.1 |
| MS.gene99141.t1 | MTR_4g078410 | 32.335 | 167 | 104 | 4 | 21 | 184 | 22 | 182 | 1.53e-15 | 73.6 |
| MS.gene99141.t1 | MTR_2g090580 | 35.359 | 181 | 94 | 7 | 21 | 184 | 24 | 198 | 1.77e-15 | 73.9 |
| MS.gene99141.t1 | MTR_6g083240 | 37.589 | 141 | 73 | 6 | 21 | 151 | 24 | 159 | 2.80e-15 | 72.8 |
| MS.gene99141.t1 | MTR_2g043790 | 43.810 | 105 | 50 | 5 | 19 | 122 | 2 | 98 | 9.44e-15 | 69.3 |
| MS.gene99141.t1 | MTR_7g086090 | 37.190 | 121 | 65 | 4 | 4 | 123 | 11 | 121 | 1.16e-14 | 72.4 |
| MS.gene99141.t1 | MTR_7g086280 | 36.364 | 121 | 66 | 4 | 4 | 123 | 11 | 121 | 2.88e-14 | 70.1 |
| MS.gene99141.t1 | MTR_0334s0010 | 35.772 | 123 | 66 | 5 | 11 | 125 | 10 | 127 | 5.72e-14 | 69.7 |
| MS.gene99141.t1 | MTR_2g101300 | 33.813 | 139 | 77 | 5 | 21 | 150 | 24 | 156 | 9.31e-14 | 68.9 |
| MS.gene99141.t1 | MTR_7g086230 | 37.736 | 106 | 60 | 3 | 19 | 123 | 21 | 121 | 1.20e-13 | 68.2 |
| MS.gene99141.t1 | MTR_7g086220 | 32.540 | 126 | 79 | 4 | 1 | 125 | 3 | 123 | 1.24e-13 | 67.8 |
| MS.gene99141.t1 | MTR_1g014120 | 34.000 | 150 | 87 | 6 | 1 | 143 | 1 | 145 | 4.94e-13 | 66.6 |
| MS.gene99141.t1 | MTR_8g463180 | 36.029 | 136 | 73 | 7 | 6 | 133 | 5 | 134 | 1.58e-12 | 67.0 |
| MS.gene99141.t1 | MTR_4g007250 | 34.615 | 104 | 61 | 4 | 21 | 123 | 26 | 123 | 2.55e-12 | 64.3 |
| MS.gene99141.t1 | MTR_6g013420 | 32.192 | 146 | 82 | 7 | 10 | 152 | 24 | 155 | 4.31e-12 | 63.9 |
| MS.gene99141.t1 | MTR_4g114830 | 38.000 | 100 | 51 | 6 | 21 | 112 | 25 | 121 | 4.75e-12 | 63.5 |
| MS.gene99141.t1 | MTR_3g105930 | 31.973 | 147 | 81 | 5 | 39 | 182 | 47 | 177 | 6.90e-12 | 63.5 |
| MS.gene99141.t1 | MTR_6g013200 | 29.091 | 165 | 103 | 7 | 1 | 157 | 10 | 168 | 8.26e-12 | 63.2 |
| MS.gene99141.t1 | MTR_4g130780 | 32.000 | 125 | 74 | 5 | 5 | 123 | 10 | 129 | 1.89e-11 | 62.0 |
| MS.gene99141.t1 | MTR_8g088830 | 39.423 | 104 | 53 | 6 | 21 | 122 | 25 | 120 | 2.23e-11 | 60.5 |
| MS.gene99141.t1 | MTR_2g079030 | 33.766 | 154 | 92 | 5 | 6 | 154 | 7 | 155 | 3.47e-11 | 63.9 |
| MS.gene99141.t1 | MTR_6g022170 | 32.258 | 124 | 73 | 5 | 21 | 139 | 31 | 148 | 3.89e-11 | 60.8 |
| MS.gene99141.t1 | MTR_6g013170 | 33.858 | 127 | 76 | 5 | 26 | 151 | 33 | 152 | 9.51e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99141.t1 | AT3G60270 | 54.545 | 110 | 45 | 2 | 17 | 126 | 19 | 123 | 4.09e-33 | 120 |
| MS.gene99141.t1 | AT2G44790 | 54.054 | 111 | 44 | 2 | 17 | 127 | 25 | 128 | 5.50e-33 | 120 |
| MS.gene99141.t1 | AT3G60280 | 51.818 | 110 | 48 | 2 | 17 | 126 | 17 | 121 | 1.23e-31 | 117 |
| MS.gene99141.t1 | AT2G32300 | 48.760 | 121 | 52 | 4 | 21 | 136 | 23 | 138 | 5.02e-28 | 109 |
| MS.gene99141.t1 | AT2G32300 | 48.760 | 121 | 52 | 4 | 21 | 136 | 53 | 168 | 1.11e-27 | 108 |
| MS.gene99141.t1 | AT1G72230 | 41.358 | 162 | 84 | 4 | 2 | 163 | 3 | 153 | 2.33e-25 | 100 |
| MS.gene99141.t1 | AT3G27200 | 40.800 | 125 | 68 | 3 | 1 | 124 | 3 | 122 | 3.65e-24 | 96.7 |
| MS.gene99141.t1 | AT5G07475 | 34.884 | 172 | 102 | 3 | 3 | 169 | 4 | 170 | 6.24e-24 | 96.7 |
| MS.gene99141.t1 | AT2G31050 | 41.429 | 140 | 70 | 5 | 8 | 140 | 8 | 142 | 8.64e-23 | 93.6 |
| MS.gene99141.t1 | AT5G26330 | 35.878 | 131 | 78 | 3 | 1 | 128 | 1 | 128 | 4.14e-21 | 89.0 |
| MS.gene99141.t1 | AT2G26720 | 38.129 | 139 | 74 | 5 | 9 | 140 | 9 | 142 | 6.87e-21 | 89.0 |
| MS.gene99141.t1 | AT1G22480 | 49.485 | 97 | 44 | 2 | 32 | 128 | 27 | 118 | 2.94e-20 | 86.3 |
| MS.gene99141.t1 | AT3G17675 | 37.500 | 104 | 59 | 3 | 21 | 123 | 29 | 127 | 3.93e-17 | 76.6 |
| MS.gene99141.t1 | AT5G20230 | 35.955 | 178 | 96 | 7 | 23 | 190 | 24 | 193 | 8.14e-17 | 77.4 |
| MS.gene99141.t1 | AT2G25060 | 37.778 | 135 | 70 | 6 | 8 | 133 | 15 | 144 | 1.85e-16 | 76.3 |
| MS.gene99141.t1 | AT1G79800 | 36.000 | 125 | 69 | 4 | 23 | 142 | 33 | 151 | 1.15e-15 | 74.3 |
| MS.gene99141.t1 | AT2G02850 | 40.000 | 115 | 60 | 5 | 11 | 124 | 23 | 129 | 1.99e-15 | 72.0 |
| MS.gene99141.t1 | AT4G31840 | 31.606 | 193 | 104 | 9 | 2 | 185 | 3 | 176 | 3.62e-15 | 72.4 |
| MS.gene99141.t1 | AT4G28365 | 33.929 | 168 | 90 | 7 | 10 | 164 | 13 | 172 | 1.58e-14 | 71.2 |
| MS.gene99141.t1 | AT5G53870 | 32.995 | 197 | 94 | 11 | 9 | 178 | 10 | 195 | 2.43e-13 | 70.1 |
| MS.gene99141.t1 | AT1G64640 | 31.818 | 132 | 80 | 4 | 21 | 145 | 30 | 158 | 3.33e-13 | 67.4 |
| MS.gene99141.t1 | AT5G53870 | 32.995 | 197 | 94 | 11 | 9 | 178 | 10 | 195 | 3.99e-13 | 69.3 |
| MS.gene99141.t1 | AT4G23160 | 46.377 | 69 | 37 | 0 | 217 | 285 | 85 | 153 | 1.05e-12 | 68.9 |
| MS.gene99141.t1 | AT4G23160 | 46.377 | 69 | 37 | 0 | 217 | 285 | 85 | 153 | 1.05e-12 | 68.9 |
| MS.gene99141.t1 | AT4G27520 | 35.200 | 125 | 69 | 5 | 9 | 126 | 12 | 131 | 2.30e-12 | 67.0 |
| MS.gene99141.t1 | AT5G15350 | 29.412 | 187 | 87 | 7 | 6 | 181 | 1 | 153 | 5.90e-12 | 63.5 |
| MS.gene99141.t1 | AT4G30590 | 41.860 | 86 | 44 | 3 | 41 | 125 | 50 | 130 | 6.02e-12 | 63.9 |
| MS.gene99141.t1 | AT4G12880 | 31.148 | 122 | 77 | 4 | 4 | 123 | 9 | 125 | 2.79e-11 | 60.8 |
| MS.gene99141.t1 | AT3G20570 | 32.353 | 170 | 104 | 6 | 1 | 164 | 5 | 169 | 6.39e-11 | 61.2 |
Find 52 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTCAGCAATGATTT+TGG | 0.095923 | 8.2:-82747608 | MS.gene99141:CDS |
| TCCATCATCATAGCTCTTTA+TGG | 0.186656 | 8.2:+82747915 | None:intergenic |
| TCATCATTCATTGCAGTATC+AGG | 0.280202 | 8.2:+82746542 | None:intergenic |
| GATTATACCAAATGGGCTTC+TGG | 0.307591 | 8.2:-82748273 | MS.gene99141:CDS |
| CCATCACCACCAAAGGATAA+TGG | 0.368895 | 8.2:-82747676 | MS.gene99141:CDS |
| CTATGATGATGGAGATTCTA+AGG | 0.371455 | 8.2:-82747905 | MS.gene99141:CDS |
| AGAAAAGCATTGATGTGAAA+TGG | 0.374457 | 8.2:-82746364 | MS.gene99141:CDS |
| ACTCCATCAACAACTCCTTC+AGG | 0.392365 | 8.2:-82747715 | MS.gene99141:CDS |
| GTCCCTGAAGGAGTTGTTGA+TGG | 0.397137 | 8.2:+82747712 | None:intergenic |
| TAATTAAGTGGTTCAACATC+AGG | 0.405707 | 8.2:+82746491 | None:intergenic |
| TACAAAGAAGCAATGCAAAT+AGG | 0.411748 | 8.2:-82746470 | MS.gene99141:CDS |
| AAGGAGTTGATTATACCAAA+TGG | 0.424289 | 8.2:-82748281 | MS.gene99141:CDS |
| CCATTATCCTTTGGTGGTGA+TGG | 0.426718 | 8.2:+82747676 | None:intergenic |
| ATTGCTTCTTTGTAATTAAG+TGG | 0.431847 | 8.2:+82746479 | None:intergenic |
| GTTGTTGATGGAGTAGTTGA+TGG | 0.440380 | 8.2:+82747724 | None:intergenic |
| CTAACAGCTCCATTATCCTT+TGG | 0.447592 | 8.2:+82747667 | None:intergenic |
| AAGGTTGCATTGACTAAAGC+AGG | 0.472415 | 8.2:-82747886 | MS.gene99141:CDS |
| GGTACCACTTGGAGTTGGGG+TGG | 0.472947 | 8.2:+82747777 | None:intergenic |
| AAATCAGTTGCAAATGCATA+AGG | 0.473584 | 8.2:+82748333 | None:intergenic |
| CATCAACTTCATTCACTTGG+TGG | 0.484952 | 8.2:+82747971 | None:intergenic |
| AAGCAATGCAAATAGGTGTA+TGG | 0.486766 | 8.2:-82746463 | MS.gene99141:CDS |
| CTCCATCAACAACTCCTTCA+GGG | 0.489544 | 8.2:-82747714 | MS.gene99141:CDS |
| GTGGCTAGAAGCTGTGAGAT+TGG | 0.489808 | 8.2:-82746284 | MS.gene99141:CDS |
| AGGAGTTGATTATACCAAAT+GGG | 0.490730 | 8.2:-82748280 | MS.gene99141:CDS |
| CCAGGTCATTGTACTAGTAC+TGG | 0.496658 | 8.2:-82747838 | MS.gene99141:CDS |
| TTCAAAGTTGGTGATAACTT+AGG | 0.497746 | 8.2:-82748243 | MS.gene99141:intron |
| TTTGCAACTGATTTCACTGT+TGG | 0.522709 | 8.2:-82748324 | MS.gene99141:CDS |
| GAAGTTGAGTTTGTCCCTGA+AGG | 0.522749 | 8.2:+82747700 | None:intergenic |
| CTATTGAGAAGACTAACATC+TGG | 0.526520 | 8.2:-82746412 | MS.gene99141:CDS |
| ACAGCTCCATTATCCTTTGG+TGG | 0.526576 | 8.2:+82747670 | None:intergenic |
| AACTTCATTCACTTGGTGGA+AGG | 0.528629 | 8.2:+82747975 | None:intergenic |
| TACTTCATATGTCCTACTCC+AGG | 0.534065 | 8.2:-82747856 | MS.gene99141:CDS |
| ACCATAAAGAGCTATGATGA+TGG | 0.545401 | 8.2:-82747916 | MS.gene99141:CDS |
| CATCAAAAGACTAACACCAT+TGG | 0.545497 | 8.2:+82747639 | None:intergenic |
| TTTCATCAACTTCATTCACT+TGG | 0.552459 | 8.2:+82747968 | None:intergenic |
| GTGAATGAAGTTGATGAAAG+TGG | 0.554625 | 8.2:-82747964 | MS.gene99141:CDS |
| TTCACTGTTGGTGATGCCAG+TGG | 0.555149 | 8.2:-82748312 | MS.gene99141:CDS |
| AACTTCTCCATCACCACCAA+AGG | 0.566009 | 8.2:-82747683 | MS.gene99141:CDS |
| CTGTTGGTGATGCCAGTGGA+TGG | 0.566622 | 8.2:-82748308 | MS.gene99141:CDS |
| AACTCCTTGAGTCCATCCAC+TGG | 0.575230 | 8.2:+82748296 | None:intergenic |
| CACTTGACTTGAAGATTGTG+AGG | 0.582738 | 8.2:-82746570 | MS.gene99141:intron |
| GATACTGCAATGAATGATGA+AGG | 0.593277 | 8.2:-82746539 | MS.gene99141:CDS |
| CTAGTACAATGACCTGGAGT+AGG | 0.594294 | 8.2:+82747844 | None:intergenic |
| GTAGTTGATGGAGTGCCACT+TGG | 0.611661 | 8.2:+82747736 | None:intergenic |
| CAATTTCAAAACACAAAGCA+AGG | 0.617863 | 8.2:-82746310 | MS.gene99141:CDS |
| CCAGTACTAGTACAATGACC+TGG | 0.623789 | 8.2:+82747838 | None:intergenic |
| GATGCCAGTGGATGGACTCA+AGG | 0.625162 | 8.2:-82748300 | MS.gene99141:CDS |
| CCACCAACAAAATCTCCAAG+TGG | 0.631426 | 8.2:-82747751 | MS.gene99141:CDS |
| AGCACCACCCCAACTCCAAG+TGG | 0.637196 | 8.2:-82747781 | MS.gene99141:CDS |
| GGTCATTGTACTAGTACTGG+TGG | 0.645353 | 8.2:-82747835 | MS.gene99141:CDS |
| AAAACACAAAGCAAGGCTAG+TGG | 0.645363 | 8.2:-82746303 | MS.gene99141:CDS |
| GGAGCTGTTAGTGTTTCCAA+TGG | 0.664368 | 8.2:-82747655 | MS.gene99141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTTATAAGCA+AGG | - | chr8.2:82746450-82746469 | MS.gene99141:CDS | 10.0% |
| !!! | TTGATCTCTTTTTTAATTAA+AGG | + | chr8.2:82747196-82747215 | None:intergenic | 15.0% |
| !! | CATCTTAATTTATGTATTCT+TGG | - | chr8.2:82747102-82747121 | MS.gene99141:intron | 20.0% |
| !! | GAAAAAACAGTGTTTAAATA+TGG | - | chr8.2:82746649-82746668 | MS.gene99141:intron | 20.0% |
| !!! | AAATTCTTCAAAATCTTTTG+AGG | + | chr8.2:82747457-82747476 | None:intergenic | 20.0% |
| !!! | TATATCAAACTTTTTCAATG+TGG | + | chr8.2:82746541-82746560 | None:intergenic | 20.0% |
| ! | ATTGCTTCTTTGTAATTAAG+TGG | + | chr8.2:82748173-82748192 | None:intergenic | 25.0% |
| !! | ACTTTTAAATGCTTCACATT+TGG | + | chr8.2:82747717-82747736 | None:intergenic | 25.0% |
| !! | TCATTTGAGGTACTTATTAT+AGG | - | chr8.2:82747253-82747272 | MS.gene99141:intron | 25.0% |
| !! | TTTGTTTCAGCAATGATTTT+GGG | - | chr8.2:82747042-82747061 | MS.gene99141:intron | 25.0% |
| !!! | ATTAAGATTTTGAGAACTGA+TGG | - | chr8.2:82747410-82747429 | MS.gene99141:intron | 25.0% |
| !!! | TTCTTTCTTTGTTTTGTTGT+TGG | - | chr8.2:82746288-82746307 | MS.gene99141:CDS | 25.0% |
| AAATCAGTTGCAAATGCATA+AGG | + | chr8.2:82746319-82746338 | None:intergenic | 30.0% | |
| AACACAATGACTTAGTAGAA+AGG | - | chr8.2:82747526-82747545 | MS.gene99141:intron | 30.0% | |
| ATCATACATTCTGATATACG+TGG | - | chr8.2:82747229-82747248 | MS.gene99141:intron | 30.0% | |
| CAATTTCAAAACACAAAGCA+AGG | - | chr8.2:82748339-82748358 | MS.gene99141:CDS | 30.0% | |
| TAATTAAGTGGTTCAACATC+AGG | + | chr8.2:82748161-82748180 | None:intergenic | 30.0% | |
| TACAAAGAAGCAATGCAAAT+AGG | - | chr8.2:82748179-82748198 | MS.gene99141:intron | 30.0% | |
| TCTGGAAAAACATTCAAAGT+TGG | - | chr8.2:82746394-82746413 | MS.gene99141:CDS | 30.0% | |
| TGATGATAGAAGTGAGAAAA+TGG | - | chr8.2:82747788-82747807 | MS.gene99141:CDS | 30.0% | |
| TTCTACTAAGTCATTGTGTT+GGG | + | chr8.2:82747526-82747545 | None:intergenic | 30.0% | |
| TTTCATCAACTTCATTCACT+TGG | + | chr8.2:82746684-82746703 | None:intergenic | 30.0% | |
| TTTCTACTAAGTCATTGTGT+TGG | + | chr8.2:82747527-82747546 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGATTATACCAAA+TGG | - | chr8.2:82746368-82746387 | MS.gene99141:CDS | 30.0% |
| ! | AGGAGTTGATTATACCAAAT+GGG | - | chr8.2:82746369-82746388 | MS.gene99141:CDS | 30.0% |
| ! | AGTGAGAAAATGGTAATGAT+AGG | - | chr8.2:82747798-82747817 | MS.gene99141:CDS | 30.0% |
| ! | TTGAGGTACTTATTATAGGA+GGG | - | chr8.2:82747257-82747276 | MS.gene99141:intron | 30.0% |
| ! | TTTGAGGTACTTATTATAGG+AGG | - | chr8.2:82747256-82747275 | MS.gene99141:intron | 30.0% |
| !! | AGAAAAGCATTGATGTGAAA+TGG | - | chr8.2:82748285-82748304 | MS.gene99141:CDS | 30.0% |
| !! | CAAAAGTATTAGAAGAAGCT+TGG | - | chr8.2:82747679-82747698 | MS.gene99141:CDS | 30.0% |
| !! | CTTTGTTTCAGCAATGATTT+TGG | - | chr8.2:82747041-82747060 | MS.gene99141:intron | 30.0% |
| !! | TGATGTGAAATGGATTTTGA+AGG | - | chr8.2:82748295-82748314 | MS.gene99141:CDS | 30.0% |
| !! | TTCAAAGTTGGTGATAACTT+AGG | - | chr8.2:82746406-82746425 | MS.gene99141:CDS | 30.0% |
| !! | TTTGTTTTCAGCTTCTTTGT+CGG | + | chr8.2:82747663-82747682 | None:intergenic | 30.0% |
| !!! | AATGGTGTTAGTCTTTTGAT+GGG | - | chr8.2:82747012-82747031 | MS.gene99141:intron | 30.0% |
| !!! | ATTTGCACCTTTTGAGTTTT+GGG | + | chr8.2:82747858-82747877 | None:intergenic | 30.0% |
| !!! | GAAGAATTTTTTGCTAGAGA+AGG | - | chr8.2:82747468-82747487 | MS.gene99141:intron | 30.0% |
| !!! | TATTTGCACCTTTTGAGTTT+TGG | + | chr8.2:82747859-82747878 | None:intergenic | 30.0% |
| !!! | TTTTTTATAAGCAAGGAGAG+AGG | - | chr8.2:82746457-82746476 | MS.gene99141:CDS | 30.0% |
| AAGCAATGCAAATAGGTGTA+TGG | - | chr8.2:82748186-82748205 | MS.gene99141:intron | 35.0% | |
| ACCATAAAGAGCTATGATGA+TGG | - | chr8.2:82746733-82746752 | MS.gene99141:intron | 35.0% | |
| ACGAAAACGAAACACAAAAC+TGG | - | chr8.2:82747898-82747917 | MS.gene99141:CDS | 35.0% | |
| ATGAGCATACTAGAATGTTG+TGG | - | chr8.2:82747305-82747324 | MS.gene99141:intron | 35.0% | |
| CATCAAAAGACTAACACCAT+TGG | + | chr8.2:82747013-82747032 | None:intergenic | 35.0% | |
| CGAAAACGAAACACAAAACT+GGG | - | chr8.2:82747899-82747918 | MS.gene99141:CDS | 35.0% | |
| CTATTGAGAAGACTAACATC+TGG | - | chr8.2:82748237-82748256 | MS.gene99141:intron | 35.0% | |
| GATACTGCAATGAATGATGA+AGG | - | chr8.2:82748110-82748129 | MS.gene99141:intron | 35.0% | |
| GTATTAGAAGAAGCTTGGAA+TGG | - | chr8.2:82747684-82747703 | MS.gene99141:CDS | 35.0% | |
| TCACAATCTTCAAGTCAAGT+GGG | + | chr8.2:82748080-82748099 | None:intergenic | 35.0% | |
| TCATCATTCATTGCAGTATC+AGG | + | chr8.2:82748110-82748129 | None:intergenic | 35.0% | |
| TCCATCATCATAGCTCTTTA+TGG | + | chr8.2:82746737-82746756 | None:intergenic | 35.0% | |
| TCTACTAAGTCATTGTGTTG+GGG | + | chr8.2:82747525-82747544 | None:intergenic | 35.0% | |
| TGATATACGTGGATCATTTG+AGG | - | chr8.2:82747240-82747259 | MS.gene99141:intron | 35.0% | |
| TTCACTTTGATCTGATTCAG+CGG | + | chr8.2:82747964-82747983 | None:intergenic | 35.0% | |
| ! | TCAATGCTTTTCTTCTTCTC+TGG | + | chr8.2:82748278-82748297 | None:intergenic | 35.0% |
| ! | TTGTTTTCAGCTTCTTTGTC+GGG | + | chr8.2:82747662-82747681 | None:intergenic | 35.0% |
| ! | TTTGCAACTGATTTCACTGT+TGG | - | chr8.2:82746325-82746344 | MS.gene99141:CDS | 35.0% |
| !! | AAGATTTTGAGAACTGATGG+TGG | - | chr8.2:82747413-82747432 | MS.gene99141:intron | 35.0% |
| !! | CTATGATGATGGAGATTCTA+AGG | - | chr8.2:82746744-82746763 | MS.gene99141:intron | 35.0% |
| !! | GGAACTTGTCTAGTTCTATA+TGG | + | chr8.2:82748059-82748078 | None:intergenic | 35.0% |
| !! | GTGAATGAAGTTGATGAAAG+TGG | - | chr8.2:82746685-82746704 | MS.gene99141:intron | 35.0% |
| !!! | AGCAATGATTTTGGGTTTGA+TGG | - | chr8.2:82747050-82747069 | MS.gene99141:intron | 35.0% |
| !!! | ATTTTGGGTTTGATGGTCTA+GGG | - | chr8.2:82747057-82747076 | MS.gene99141:intron | 35.0% |
| !!! | CAATGGTGTTAGTCTTTTGA+TGG | - | chr8.2:82747011-82747030 | MS.gene99141:intron | 35.0% |
| AAAACACAAAGCAAGGCTAG+TGG | - | chr8.2:82748346-82748365 | MS.gene99141:CDS | 40.0% | |
| CATCAACTTCATTCACTTGG+TGG | + | chr8.2:82746681-82746700 | None:intergenic | 40.0% | |
| CTAACAGCTCCATTATCCTT+TGG | + | chr8.2:82746985-82747004 | None:intergenic | 40.0% | |
| CTCACAATCTTCAAGTCAAG+TGG | + | chr8.2:82748081-82748100 | None:intergenic | 40.0% | |
| GCATGATCCCAAAACTCAAA+AGG | - | chr8.2:82747848-82747867 | MS.gene99141:CDS | 40.0% | |
| GTTCTATATGGTCTCACTAC+AGG | + | chr8.2:82748047-82748066 | None:intergenic | 40.0% | |
| TACTTCATATGTCCTACTCC+AGG | - | chr8.2:82746793-82746812 | MS.gene99141:intron | 40.0% | |
| ! | AACTTCATTCACTTGGTGGA+AGG | + | chr8.2:82746677-82746696 | None:intergenic | 40.0% |
| ! | AAGAAGCATGCTCAAGCAAA+AGG | - | chr8.2:82747575-82747594 | MS.gene99141:intron | 40.0% |
| ! | ACTTGGAGATTTTGTTGGTG+GGG | + | chr8.2:82746899-82746918 | None:intergenic | 40.0% |
| ! | CACTTGACTTGAAGATTGTG+AGG | - | chr8.2:82748079-82748098 | MS.gene99141:intron | 40.0% |
| ! | CACTTGGAGATTTTGTTGGT+GGG | + | chr8.2:82746900-82746919 | None:intergenic | 40.0% |
| ! | GATTATACCAAATGGGCTTC+TGG | - | chr8.2:82746376-82746395 | MS.gene99141:CDS | 40.0% |
| ! | GTTGTTGATGGAGTAGTTGA+TGG | + | chr8.2:82746928-82746947 | None:intergenic | 40.0% |
| ! | TGTTTTTCCAGAAGCCCATT+TGG | + | chr8.2:82746386-82746405 | None:intergenic | 40.0% |
| !! | AAGGTTGCATTGACTAAAGC+AGG | - | chr8.2:82746763-82746782 | MS.gene99141:intron | 40.0% |
| !! | TTTGAGAACTGATGGTGGTA+AGG | - | chr8.2:82747418-82747437 | MS.gene99141:intron | 40.0% |
| !!! | GATTTTGGGTTTGATGGTCT+AGG | - | chr8.2:82747056-82747075 | MS.gene99141:intron | 40.0% |
| AACTTCTCCATCACCACCAA+AGG | - | chr8.2:82746966-82746985 | MS.gene99141:intron | 45.0% | |
| ACAGCTCCATTATCCTTTGG+TGG | + | chr8.2:82746982-82747001 | None:intergenic | 45.0% | |
| ACTCCATCAACAACTCCTTC+AGG | - | chr8.2:82746934-82746953 | MS.gene99141:intron | 45.0% | |
| CCACCAACAAAATCTCCAAG+TGG | - | chr8.2:82746898-82746917 | MS.gene99141:intron | 45.0% | |
| CCAGGTCATTGTACTAGTAC+TGG | - | chr8.2:82746811-82746830 | MS.gene99141:intron | 45.0% | |
| CCAGTACTAGTACAATGACC+TGG | + | chr8.2:82746814-82746833 | None:intergenic | 45.0% | |
| CCATCACCACCAAAGGATAA+TGG | - | chr8.2:82746973-82746992 | MS.gene99141:intron | 45.0% | |
| CTAGTACAATGACCTGGAGT+AGG | + | chr8.2:82746808-82746827 | None:intergenic | 45.0% | |
| CTCCATCAACAACTCCTTCA+GGG | - | chr8.2:82746935-82746954 | MS.gene99141:intron | 45.0% | |
| GAAGTTGAGTTTGTCCCTGA+AGG | + | chr8.2:82746952-82746971 | None:intergenic | 45.0% | |
| GAGAGAGGACAAACATCAAG+AGG | - | chr8.2:82746472-82746491 | MS.gene99141:CDS | 45.0% | |
| GGAGCTGTTAGTGTTTCCAA+TGG | - | chr8.2:82746994-82747013 | MS.gene99141:intron | 45.0% | |
| ! | AGCTTGCTTCTCTTTGCATC+AGG | + | chr8.2:82747768-82747787 | None:intergenic | 45.0% |
| ! | AGGACAAGCCTCACAAGTTT+TGG | - | chr8.2:82747595-82747614 | MS.gene99141:intron | 45.0% |
| ! | CCACTTGGAGATTTTGTTGG+TGG | + | chr8.2:82746901-82746920 | None:intergenic | 45.0% |
| ! | GACAAGCCTCACAAGTTTTG+GGG | - | chr8.2:82747597-82747616 | MS.gene99141:intron | 45.0% |
| ! | GGACAAGCCTCACAAGTTTT+GGG | - | chr8.2:82747596-82747615 | MS.gene99141:intron | 45.0% |
| ! | GGTCATTGTACTAGTACTGG+TGG | - | chr8.2:82746814-82746833 | MS.gene99141:intron | 45.0% |
| ! | TCATTGTGTTGGGGAGTGTA+GGG | + | chr8.2:82747516-82747535 | None:intergenic | 45.0% |
| !! | ACTGATGGTGGTAAGGACTA+AGG | - | chr8.2:82747425-82747444 | MS.gene99141:intron | 45.0% |
| !! | CCATTATCCTTTGGTGGTGA+TGG | + | chr8.2:82746976-82746995 | None:intergenic | 45.0% |
| !! | CTTGGAGATTTTGTTGGTGG+GGG | + | chr8.2:82746898-82746917 | None:intergenic | 45.0% |
| !! | TTGGAGATTTTGTTGGTGGG+GGG | + | chr8.2:82746897-82746916 | None:intergenic | 45.0% |
| !!! | GTGCCACTTGGAGATTTTGT+TGG | + | chr8.2:82746904-82746923 | None:intergenic | 45.0% |
| AACTCCTTGAGTCCATCCAC+TGG | + | chr8.2:82746356-82746375 | None:intergenic | 50.0% | |
| GCTTCTCCCCAAAACTTGTG+AGG | + | chr8.2:82747606-82747625 | None:intergenic | 50.0% | |
| GTCCCTGAAGGAGTTGTTGA+TGG | + | chr8.2:82746940-82746959 | None:intergenic | 50.0% | |
| GTGGCTAGAAGCTGTGAGAT+TGG | - | chr8.2:82748365-82748384 | MS.gene99141:CDS | 50.0% | |
| ! | GTCATTGTGTTGGGGAGTGT+AGG | + | chr8.2:82747517-82747536 | None:intergenic | 50.0% |
| !! | GTAGTTGATGGAGTGCCACT+TGG | + | chr8.2:82746916-82746935 | None:intergenic | 50.0% |
| !! | TGGAGATTTTGTTGGTGGGG+GGG | + | chr8.2:82746896-82746915 | None:intergenic | 50.0% |
| !! | TTCACTGTTGGTGATGCCAG+TGG | - | chr8.2:82746337-82746356 | MS.gene99141:CDS | 50.0% |
| ! | GATGCCAGTGGATGGACTCA+AGG | - | chr8.2:82746349-82746368 | MS.gene99141:CDS | 55.0% |
| !! | CTGTTGGTGATGCCAGTGGA+TGG | - | chr8.2:82746341-82746360 | MS.gene99141:CDS | 55.0% |
| AGCACCACCCCAACTCCAAG+TGG | - | chr8.2:82746868-82746887 | MS.gene99141:intron | 60.0% | |
| GGTACCACTTGGAGTTGGGG+TGG | + | chr8.2:82746875-82746894 | None:intergenic | 60.0% | |
| !! | GGGGGGTACCACTTGGAGTT+GGG | + | chr8.2:82746879-82746898 | None:intergenic | 60.0% |
| !! | GGGGGTACCACTTGGAGTTG+GGG | + | chr8.2:82746878-82746897 | None:intergenic | 60.0% |
| !! | GGGGGGGTACCACTTGGAGT+TGG | + | chr8.2:82746880-82746899 | None:intergenic | 65.0% |
| !! | GTTGGTGGGGGGGTACCACT+TGG | + | chr8.2:82746886-82746905 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 82746268 | 82748403 | 82746268 | ID=MS.gene99141 |
| chr8.2 | mRNA | 82746268 | 82748403 | 82746268 | ID=MS.gene99141.t1;Parent=MS.gene99141 |
| chr8.2 | exon | 82748244 | 82748403 | 82748244 | ID=MS.gene99141.t1.exon1;Parent=MS.gene99141.t1 |
| chr8.2 | CDS | 82748244 | 82748403 | 82748244 | ID=cds.MS.gene99141.t1;Parent=MS.gene99141.t1 |
| chr8.2 | exon | 82747608 | 82748021 | 82747608 | ID=MS.gene99141.t1.exon2;Parent=MS.gene99141.t1 |
| chr8.2 | CDS | 82747608 | 82748021 | 82747608 | ID=cds.MS.gene99141.t1;Parent=MS.gene99141.t1 |
| chr8.2 | exon | 82746268 | 82746578 | 82746268 | ID=MS.gene99141.t1.exon3;Parent=MS.gene99141.t1 |
| chr8.2 | CDS | 82746268 | 82746578 | 82746268 | ID=cds.MS.gene99141.t1;Parent=MS.gene99141.t1 |
| Gene Sequence |
| Protein sequence |
