Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055463.t1 | XP_003610817.1 | 97.2 | 216 | 6 | 0 | 1 | 216 | 76 | 291 | 1.00E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055463.t1 | G7K556 | 97.2 | 216 | 6 | 0 | 1 | 216 | 76 | 291 | 7.5e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055463 | MS.gene055464 | 0.812964 | 3.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGAGTTCCTTGAATTTA+AGG | 0.162942 | 5.1:+26287157 | MS.gene055463:CDS |
| GTCCAAACATGCTTGTCTTT+TGG | 0.226912 | 5.1:-26287244 | None:intergenic |
| TCCTTAGCACAGCTCCGATA+TGG | 0.248467 | 5.1:+26285644 | MS.gene055463:CDS |
| TACTTCCAAATCCTAAATTA+TGG | 0.275004 | 5.1:+26284998 | MS.gene055463:CDS |
| ACATACCATAATTTAGGATT+TGG | 0.298779 | 5.1:-26285003 | None:intergenic |
| GAAGTATAACTTTACAAGTT+AGG | 0.321243 | 5.1:-26284981 | None:intergenic |
| TGATCTCAGTACTTGATTTA+CGG | 0.326854 | 5.1:-26287894 | None:intergenic |
| CTCTGGTGCTGATGCTCCCT+TGG | 0.331844 | 5.1:-26287858 | None:intergenic |
| GAGAGCACACTCTTTGTTCC+GGG | 0.351339 | 5.1:-26285547 | None:intergenic |
| TTACAAGTTAGGAATCCTTT+AGG | 0.352898 | 5.1:-26284970 | None:intergenic |
| ATCCAAAAGACAAGCATGTT+TGG | 0.358398 | 5.1:+26287242 | MS.gene055463:CDS |
| AGAGAGCACACTCTTTGTTC+CGG | 0.360940 | 5.1:-26285548 | None:intergenic |
| CCTCCTTGCCCTTAAATTCA+AGG | 0.368520 | 5.1:-26287166 | None:intergenic |
| AAGAGGTTCCTTACAGGATC+AGG | 0.374138 | 5.1:-26284634 | None:intergenic |
| GGAGAGTTCCTTGAATTTAA+GGG | 0.377759 | 5.1:+26287158 | MS.gene055463:CDS |
| TCAGTTGCACCAACTGTTCA+TGG | 0.383310 | 5.1:-26285522 | None:intergenic |
| CAAAGAGTGTGCTCTCTAGC+TGG | 0.413619 | 5.1:+26285554 | MS.gene055463:CDS |
| AAAGGCAGCAAGTATGTATT+GGG | 0.428495 | 5.1:+26287137 | MS.gene055463:CDS |
| GTAAAGAATACCTTTCTTAG+TGG | 0.432856 | 5.1:+26285577 | MS.gene055463:CDS |
| GAAAGGCAGCAAGTATGTAT+TGG | 0.437053 | 5.1:+26287136 | MS.gene055463:CDS |
| CAGAGAGCTACTAGTGATAT+CGG | 0.442531 | 5.1:+26284525 | None:intergenic |
| CAGTTCAAGGGGATGGTAGT+TGG | 0.442677 | 5.1:+26284572 | MS.gene055463:CDS |
| TACAAAACTTGAAGCGTAGA+AGG | 0.445109 | 5.1:-26287815 | None:intergenic |
| AGTTCAAGGGGATGGTAGTT+GGG | 0.450991 | 5.1:+26284573 | MS.gene055463:CDS |
| AGAGGAGTTGTTCTACCTAA+AGG | 0.458571 | 5.1:+26284955 | MS.gene055463:CDS |
| CCTTAGCACAGCTCCGATAT+GGG | 0.458981 | 5.1:+26285645 | MS.gene055463:CDS |
| TGTTCATGGGTAATAACTTC+AGG | 0.467363 | 5.1:-26285508 | None:intergenic |
| AACTCCTCTTTGTTCAAGAT+AGG | 0.470713 | 5.1:-26284941 | None:intergenic |
| TGAATTTAAGGGCAAGGAGG+GGG | 0.482520 | 5.1:+26287169 | MS.gene055463:CDS |
| ATCATTCTTCCCACTAAGAA+AGG | 0.488207 | 5.1:-26285587 | None:intergenic |
| CTTGAATTTAAGGGCAAGGA+GGG | 0.496833 | 5.1:+26287167 | MS.gene055463:CDS |
| GTAACTAACCTATCCCATAT+CGG | 0.509751 | 5.1:-26285658 | None:intergenic |
| TAAAGAATACCTTTCTTAGT+GGG | 0.519984 | 5.1:+26285578 | MS.gene055463:CDS |
| GATATCGGTGAAGAACTTCT+CGG | 0.527229 | 5.1:+26284540 | MS.gene055463:CDS |
| TTGAATTTAAGGGCAAGGAG+GGG | 0.528134 | 5.1:+26287168 | MS.gene055463:CDS |
| CTCCCTTGGTTCTGTAGTCA+CGG | 0.532065 | 5.1:-26287844 | None:intergenic |
| GTTCCTTGAATTTAAGGGCA+AGG | 0.535185 | 5.1:+26287163 | MS.gene055463:CDS |
| GTTGGAAGAAGTAAGAAAGC+AGG | 0.540992 | 5.1:+26284903 | MS.gene055463:intron |
| TGGGAAATCACTAGCAGGAA+TGG | 0.544917 | 5.1:-26285485 | None:intergenic |
| CATATTAGAAGATCAAAAGT+TGG | 0.546113 | 5.1:+26287209 | MS.gene055463:CDS |
| ATATCGGTGAAGAACTTCTC+GGG | 0.548520 | 5.1:+26284541 | MS.gene055463:CDS |
| AAGACAAGCATGTTTGGACT+AGG | 0.550639 | 5.1:+26287248 | MS.gene055463:CDS |
| ACGGTCACTTCGTTCCACTC+TGG | 0.551455 | 5.1:-26287875 | None:intergenic |
| CAGTTGGTGCAACTGAAGCC+CGG | 0.558138 | 5.1:+26285529 | MS.gene055463:CDS |
| CAGTTGCACCAACTGTTCAT+GGG | 0.560744 | 5.1:-26285521 | None:intergenic |
| AAAGAGTGTGCTCTCTAGCT+GGG | 0.564254 | 5.1:+26285555 | MS.gene055463:CDS |
| CCCATATCGGAGCTGTGCTA+AGG | 0.568778 | 5.1:-26285645 | None:intergenic |
| TCATGGGTAATAACTTCAGG+TGG | 0.572116 | 5.1:-26285505 | None:intergenic |
| AGTTGGGCCTGTGAAAAGCC+AGG | 0.575563 | 5.1:+26284589 | MS.gene055463:CDS |
| AGAGGTTCCTTACAGGATCA+GGG | 0.579456 | 5.1:-26284633 | None:intergenic |
| CCTTGAATTTAAGGGCAAGG+AGG | 0.585033 | 5.1:+26287166 | MS.gene055463:CDS |
| GCACAGCTCCGATATGGGAT+AGG | 0.585641 | 5.1:+26285650 | MS.gene055463:CDS |
| AGTTATTACCCATGAACAGT+TGG | 0.586406 | 5.1:+26285513 | MS.gene055463:CDS |
| TCCTTACAGGATCAGGGTGA+CGG | 0.588996 | 5.1:-26284627 | None:intergenic |
| TCAGGTGGGAAATCACTAGC+AGG | 0.590475 | 5.1:-26285490 | None:intergenic |
| GCTTGCAGGTTGGAACTGAA+AGG | 0.595661 | 5.1:+26287119 | MS.gene055463:intron |
| TTCCGTGACTACAGAACCAA+GGG | 0.621677 | 5.1:+26287842 | MS.gene055463:CDS |
| TTTGTTCAAGATAGGACTCG+AGG | 0.627057 | 5.1:-26284933 | None:intergenic |
| CATGGGTAATAACTTCAGGT+GGG | 0.643301 | 5.1:-26285504 | None:intergenic |
| GAGTCCTATCTTGAACAAAG+AGG | 0.656933 | 5.1:+26284937 | MS.gene055463:CDS |
| TTTCCGTGACTACAGAACCA+AGG | 0.679639 | 5.1:+26287841 | MS.gene055463:CDS |
| AGGGAGCATCAGCACCAGAG+TGG | 0.687214 | 5.1:+26287861 | MS.gene055463:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAATAACAAAATTTAAT+GGG | + | chr5.1:26287318-26287337 | MS.gene055463:intron | 10.0% |
| !! | AAAATAATATGATGTTTCAT+TGG | - | chr5.1:26286463-26286482 | None:intergenic | 15.0% |
| !! | AAGAACTAATTAAAAAAGAA+TGG | - | chr5.1:26285214-26285233 | None:intergenic | 15.0% |
| !! | AGTATTAAATAAAACATTGA+GGG | - | chr5.1:26287402-26287421 | None:intergenic | 15.0% |
| !! | GCTATAATAACAAAATTTAA+TGG | + | chr5.1:26287317-26287336 | MS.gene055463:intron | 15.0% |
| !! | TAAATAGTTAAGTGTATAAT+AGG | - | chr5.1:26286487-26286506 | None:intergenic | 15.0% |
| !! | TAGTATTAAATAAAACATTG+AGG | - | chr5.1:26287403-26287422 | None:intergenic | 15.0% |
| !!! | ACTTTAAAATTTTCCAAATT+TGG | + | chr5.1:26285139-26285158 | MS.gene055463:intron | 15.0% |
| !!! | ATAACTCAATTCTTTAATTT+CGG | + | chr5.1:26286575-26286594 | MS.gene055463:intron | 15.0% |
| !!! | ATTCTTTTTTAATTAGTTCT+TGG | + | chr5.1:26285213-26285232 | MS.gene055463:intron | 15.0% |
| !!! | TATTTAATATGACCAAATTT+TGG | + | chr5.1:26287071-26287090 | MS.gene055463:intron | 15.0% |
| !!! | TTTTCAATAACATTAATGAA+GGG | + | chr5.1:26286540-26286559 | MS.gene055463:intron | 15.0% |
| !! | ACATTCATAATTTATTCAAG+AGG | - | chr5.1:26284654-26284673 | None:intergenic | 20.0% |
| !! | ATCTTATTCAAACATAGATT+AGG | - | chr5.1:26286041-26286060 | None:intergenic | 20.0% |
| !! | ATTACTGTCTAAACTATAAT+TGG | + | chr5.1:26285253-26285272 | MS.gene055463:intron | 20.0% |
| !! | ATTAGAAAGATAAGAACAAA+TGG | - | chr5.1:26285683-26285702 | None:intergenic | 20.0% |
| !! | TCAAAAACATACCATAATTT+AGG | - | chr5.1:26285012-26285031 | None:intergenic | 20.0% |
| !! | TCTATTATATAACTTAGAGA+AGG | - | chr5.1:26287584-26287603 | None:intergenic | 20.0% |
| !! | TTTAACCAACAATATGAAAA+AGG | - | chr5.1:26286285-26286304 | None:intergenic | 20.0% |
| !!! | AATGGATTATACATATGAAT+AGG | - | chr5.1:26285196-26285215 | None:intergenic | 20.0% |
| !!! | GAATTGTGTTGTTAATAAAT+TGG | + | chr5.1:26285275-26285294 | MS.gene055463:intron | 20.0% |
| !!! | GTTTTCAATAACATTAATGA+AGG | + | chr5.1:26286539-26286558 | MS.gene055463:intron | 20.0% |
| !!! | TAGTACTATTGATTACTAAA+AGG | + | chr5.1:26286359-26286378 | MS.gene055463:intron | 20.0% |
| !!! | TGTTTGTTAAATCATATGAA+CGG | + | chr5.1:26284762-26284781 | MS.gene055463:intron | 20.0% |
| !!! | TTATGATGTAAAAAAAGCAT+TGG | + | chr5.1:26285350-26285369 | MS.gene055463:intron | 20.0% |
| !!! | TTTTCATATTGTTGGTTAAA+GGG | + | chr5.1:26286285-26286304 | MS.gene055463:intron | 20.0% |
| !!! | TTTTTCATATTGTTGGTTAA+AGG | + | chr5.1:26286284-26286303 | MS.gene055463:intron | 20.0% |
| !!! | TTTTTCCTTTTTCATATTGT+TGG | + | chr5.1:26286277-26286296 | MS.gene055463:intron | 20.0% |
| ! | AAAATAATCAAACCGTGTAT+TGG | - | chr5.1:26285112-26285131 | None:intergenic | 25.0% |
| ! | AAACTTTCTGCAATCATATT+TGG | + | chr5.1:26285720-26285739 | MS.gene055463:intron | 25.0% |
| ! | AATATCTGTTGTAACCAAAA+TGG | - | chr5.1:26287478-26287497 | None:intergenic | 25.0% |
| ! | ATCAATCCATTTCTGAATAT+TGG | + | chr5.1:26285808-26285827 | MS.gene055463:intron | 25.0% |
| ! | ATTACATAGCAAATGTTGAT+AGG | + | chr5.1:26286309-26286328 | MS.gene055463:intron | 25.0% |
| ! | ATTTCTTAATCTGTGTGAAA+TGG | + | chr5.1:26286613-26286632 | MS.gene055463:intron | 25.0% |
| ! | CATATTAGAAGATCAAAAGT+TGG | + | chr5.1:26287209-26287228 | MS.gene055463:CDS | 25.0% |
| ! | GAAGTATAACTTTACAAGTT+AGG | - | chr5.1:26284984-26285003 | None:intergenic | 25.0% |
| ! | GATGTTTCTTTAACTAACAT+GGG | + | chr5.1:26287779-26287798 | MS.gene055463:intron | 25.0% |
| ! | GATTAGGAATACTAGTAATT+AGG | - | chr5.1:26286025-26286044 | None:intergenic | 25.0% |
| ! | GTGAGTAAAAAACCAAAATT+TGG | - | chr5.1:26287086-26287105 | None:intergenic | 25.0% |
| ! | TAAAGAATACCTTTCTTAGT+GGG | + | chr5.1:26285578-26285597 | MS.gene055463:CDS | 25.0% |
| ! | TACTTCCAAATCCTAAATTA+TGG | + | chr5.1:26284998-26285017 | MS.gene055463:CDS | 25.0% |
| ! | TATGGAAGAAGTTACTAATT+TGG | - | chr5.1:26284859-26284878 | None:intergenic | 25.0% |
| ! | TCAATATATGAAGCCAAATT+TGG | - | chr5.1:26285155-26285174 | None:intergenic | 25.0% |
| ! | TCTCAAAGCAACTTAAATTT+GGG | - | chr5.1:26286400-26286419 | None:intergenic | 25.0% |
| ! | TGATGTTTCTTTAACTAACA+TGG | + | chr5.1:26287778-26287797 | MS.gene055463:intron | 25.0% |
| ! | TGTAAAGTGACTTACAATTT+GGG | - | chr5.1:26286437-26286456 | None:intergenic | 25.0% |
| ! | TTCTCAAAGCAACTTAAATT+TGG | - | chr5.1:26286401-26286420 | None:intergenic | 25.0% |
| ! | TTGTAAAGTGACTTACAATT+TGG | - | chr5.1:26286438-26286457 | None:intergenic | 25.0% |
| ! | TTGTATTTAGATGCTGTTAA+TGG | + | chr5.1:26285749-26285768 | MS.gene055463:intron | 25.0% |
| !! | AAAAAGTACGATTTGTGTAT+TGG | - | chr5.1:26286171-26286190 | None:intergenic | 25.0% |
| !! | AAACATTTGAGATGCATTAT+AGG | - | chr5.1:26285962-26285981 | None:intergenic | 25.0% |
| !! | AAATTAAGAATTGCTCTAAG+AGG | - | chr5.1:26286722-26286741 | None:intergenic | 25.0% |
| !! | AACATTTGAGATGCATTATA+GGG | - | chr5.1:26285961-26285980 | None:intergenic | 25.0% |
| !! | ACATACCATAATTTAGGATT+TGG | - | chr5.1:26285006-26285025 | None:intergenic | 25.0% |
| !! | ATCTATATTTGAGACAGAAT+TGG | - | chr5.1:26285918-26285937 | None:intergenic | 25.0% |
| !! | ATTTTATAGAAAAGAGTCAC+AGG | - | chr5.1:26287680-26287699 | None:intergenic | 25.0% |
| !! | GCTTAGATATTTTCCTATTT+GGG | + | chr5.1:26286977-26286996 | MS.gene055463:intron | 25.0% |
| !! | TCTAGTTTCATTGTTTATCT+AGG | - | chr5.1:26286144-26286163 | None:intergenic | 25.0% |
| !! | TGCTTAGATATTTTCCTATT+TGG | + | chr5.1:26286976-26286995 | MS.gene055463:intron | 25.0% |
| !! | TTTCATATTGTTGGTTAAAG+GGG | + | chr5.1:26286286-26286305 | MS.gene055463:intron | 25.0% |
| !!! | ACAAATCGTACTTTTTATTG+GGG | + | chr5.1:26286175-26286194 | MS.gene055463:intron | 25.0% |
| !!! | ACACAAATCGTACTTTTTAT+TGG | + | chr5.1:26286173-26286192 | MS.gene055463:intron | 25.0% |
| !!! | AGGTATTTAACTTGAGATTA+GGG | - | chr5.1:26286124-26286143 | None:intergenic | 25.0% |
| !!! | CACAAATCGTACTTTTTATT+GGG | + | chr5.1:26286174-26286193 | MS.gene055463:intron | 25.0% |
| !!! | CTTCATATATTGACTTGTTA+TGG | + | chr5.1:26285162-26285181 | MS.gene055463:intron | 25.0% |
| !!! | TAGATTTTAGAAACTGCTTT+TGG | + | chr5.1:26284738-26284757 | MS.gene055463:intron | 25.0% |
| !!! | TAGGTATTTAACTTGAGATT+AGG | - | chr5.1:26286125-26286144 | None:intergenic | 25.0% |
| !!! | TTTGTTCCTATTTTGTTATG+AGG | + | chr5.1:26284800-26284819 | MS.gene055463:intron | 25.0% |
| AAAGCAACTTAAATTTGGGA+TGG | - | chr5.1:26286396-26286415 | None:intergenic | 30.0% | |
| AATGTTCTGATTCTTGATCT+TGG | - | chr5.1:26287611-26287630 | None:intergenic | 30.0% | |
| ACAATCTCAGAAACTCTATT+TGG | + | chr5.1:26285856-26285875 | MS.gene055463:intron | 30.0% | |
| AGAATCAGAACATTGAACAT+TGG | + | chr5.1:26287617-26287636 | MS.gene055463:intron | 30.0% | |
| ATACAGCCTCATAACAAAAT+AGG | - | chr5.1:26284809-26284828 | None:intergenic | 30.0% | |
| ATACTAGTAATTAGGATGTC+TGG | - | chr5.1:26286017-26286036 | None:intergenic | 30.0% | |
| ATCAAGATCTGATTAGACTA+TGG | - | chr5.1:26287455-26287474 | None:intergenic | 30.0% | |
| ATCCATTTCTGAATATTGGT+AGG | + | chr5.1:26285812-26285831 | MS.gene055463:intron | 30.0% | |
| ATCCTACCAATATTCAGAAA+TGG | - | chr5.1:26285817-26285836 | None:intergenic | 30.0% | |
| CAGCAAGTACTTATATTTCA+AGG | - | chr5.1:26285039-26285058 | None:intergenic | 30.0% | |
| CATAAGACAGAGGTAATTAT+CGG | - | chr5.1:26287714-26287733 | None:intergenic | 30.0% | |
| CATTCTGTTATAAAAGGATG+TGG | - | chr5.1:26286850-26286869 | None:intergenic | 30.0% | |
| CTTGAAGTTGAAACAAAGAT+TGG | + | chr5.1:26287354-26287373 | MS.gene055463:intron | 30.0% | |
| GTAAAGAATACCTTTCTTAG+TGG | + | chr5.1:26285577-26285596 | MS.gene055463:CDS | 30.0% | |
| TCATAAATACTGCTTGTCAA+TGG | - | chr5.1:26285336-26285355 | None:intergenic | 30.0% | |
| TTACAAGTTAGGAATCCTTT+AGG | - | chr5.1:26284973-26284992 | None:intergenic | 30.0% | |
| TTCTGAATATTGGTAGGATA+AGG | + | chr5.1:26285818-26285837 | MS.gene055463:intron | 30.0% | |
| TTTACTCACAACAGATTGTT+TGG | + | chr5.1:26287097-26287116 | MS.gene055463:intron | 30.0% | |
| TTTCTCAACTTGTATACAGT+TGG | + | chr5.1:26284885-26284904 | MS.gene055463:intron | 30.0% | |
| ! | AATCAGATCTTGATCCATTT+TGG | + | chr5.1:26287461-26287480 | MS.gene055463:intron | 30.0% |
| ! | ATGGTTTTTGCCACTAATTA+AGG | - | chr5.1:26287436-26287455 | None:intergenic | 30.0% |
| ! | ATTCATGATTTGCCAATACA+CGG | + | chr5.1:26285097-26285116 | MS.gene055463:intron | 30.0% |
| ! | CAAGTTGAGAAAACGAATTA+TGG | - | chr5.1:26284877-26284896 | None:intergenic | 30.0% |
| ! | GGTCAAAATGACTTGTAATT+CGG | + | chr5.1:26286634-26286653 | MS.gene055463:intron | 30.0% |
| ! | GTCAAAATGACTTGTAATTC+GGG | + | chr5.1:26286635-26286654 | MS.gene055463:intron | 30.0% |
| ! | TATATTTGAGACAGAATTGG+AGG | - | chr5.1:26285915-26285934 | None:intergenic | 30.0% |
| ! | TCCTTTTATAACAGAATGTG+TGG | + | chr5.1:26286852-26286871 | MS.gene055463:intron | 30.0% |
| ! | TGGTTTTTGCCACTAATTAA+GGG | - | chr5.1:26287435-26287454 | None:intergenic | 30.0% |
| ! | TTACTCAGTTTTCTTTTGAC+TGG | - | chr5.1:26285390-26285409 | None:intergenic | 30.0% |
| ! | TTATAGGGTTTTCATTCAGT+CGG | - | chr5.1:26285946-26285965 | None:intergenic | 30.0% |
| ! | TTTTTATTGGGGAAATACCT+TGG | + | chr5.1:26286186-26286205 | MS.gene055463:intron | 30.0% |
| !! | TTTTGTTATGAGGCTGTATT+AGG | + | chr5.1:26284810-26284829 | MS.gene055463:intron | 30.0% |
| !!! | CTGCGATGGTTTTTTTTTTT+GGG | + | chr5.1:26284702-26284721 | MS.gene055463:intron | 30.0% |
| AAAAGAGTCACAGGTAACTA+GGG | - | chr5.1:26287671-26287690 | None:intergenic | 35.0% | |
| AAAGGCAGCAAGTATGTATT+GGG | + | chr5.1:26287137-26287156 | MS.gene055463:CDS | 35.0% | |
| AACATTGCACCCTACATAAT+AGG | + | chr5.1:26286943-26286962 | MS.gene055463:intron | 35.0% | |
| AACTCCTCTTTGTTCAAGAT+AGG | - | chr5.1:26284944-26284963 | None:intergenic | 35.0% | |
| ACTTTGGATCAGTGTACTAT+CGG | + | chr5.1:26287034-26287053 | MS.gene055463:intron | 35.0% | |
| AGTTATTACCCATGAACAGT+TGG | + | chr5.1:26285513-26285532 | MS.gene055463:CDS | 35.0% | |
| ATCATTCTTCCCACTAAGAA+AGG | - | chr5.1:26285590-26285609 | None:intergenic | 35.0% | |
| ATCCAAAAGACAAGCATGTT+TGG | + | chr5.1:26287242-26287261 | MS.gene055463:CDS | 35.0% | |
| CAACCAAATCCCTTAATTAG+TGG | + | chr5.1:26287423-26287442 | MS.gene055463:intron | 35.0% | |
| CGATAATTACCTCTGTCTTA+TGG | + | chr5.1:26287712-26287731 | MS.gene055463:intron | 35.0% | |
| GCCACACATTCTGTTATAAA+AGG | - | chr5.1:26286856-26286875 | None:intergenic | 35.0% | |
| GGAGAGTTCCTTGAATTTAA+GGG | + | chr5.1:26287158-26287177 | MS.gene055463:CDS | 35.0% | |
| GTAACTAACCTATCCCATAT+CGG | - | chr5.1:26285661-26285680 | None:intergenic | 35.0% | |
| GTGTACTATCGGATAATTGT+TGG | + | chr5.1:26287045-26287064 | MS.gene055463:intron | 35.0% | |
| TACAAAACTTGAAGCGTAGA+AGG | - | chr5.1:26287818-26287837 | None:intergenic | 35.0% | |
| TATTAGGTGTGGAAGGAAAT+GGG | + | chr5.1:26284826-26284845 | MS.gene055463:intron | 35.0% | |
| TCAGAAACTCTATTTGGAGA+AGG | + | chr5.1:26285862-26285881 | MS.gene055463:intron | 35.0% | |
| TGTTCATGGGTAATAACTTC+AGG | - | chr5.1:26285511-26285530 | None:intergenic | 35.0% | |
| TTATTCAAGAGGTTCCTTAC+AGG | - | chr5.1:26284643-26284662 | None:intergenic | 35.0% | |
| TTGCCACTAATTAAGGGATT+TGG | - | chr5.1:26287429-26287448 | None:intergenic | 35.0% | |
| ! | AACTTGAGATTAGGGTTTTC+TGG | - | chr5.1:26286116-26286135 | None:intergenic | 35.0% |
| ! | CAACTTAAATTTGGGATGGA+GGG | - | chr5.1:26286392-26286411 | None:intergenic | 35.0% |
| ! | CTTGACAACACTTTTGCTTA+GGG | + | chr5.1:26285775-26285794 | MS.gene055463:intron | 35.0% |
| ! | CTTGGCAAAAGGAACATTTT+GGG | + | chr5.1:26286204-26286223 | MS.gene055463:intron | 35.0% |
| ! | TTGACAACACTTTTGCTTAG+GGG | + | chr5.1:26285776-26285795 | MS.gene055463:intron | 35.0% |
| ! | TTGGCAAAAGGAACATTTTG+GGG | + | chr5.1:26286205-26286224 | MS.gene055463:intron | 35.0% |
| !! | AAAAAAAGCATTGGTCCATC+TGG | + | chr5.1:26285359-26285378 | MS.gene055463:intron | 35.0% |
| !! | AACATTGAACATTGGCTCTA+CGG | + | chr5.1:26287625-26287644 | MS.gene055463:intron | 35.0% |
| !! | AAGAATTGCTCTAAGAGGTT+GGG | - | chr5.1:26286717-26286736 | None:intergenic | 35.0% |
| !! | ATACTGTTTTATTGCTGCGA+TGG | + | chr5.1:26284688-26284707 | MS.gene055463:intron | 35.0% |
| !! | TAAGAATTGCTCTAAGAGGT+TGG | - | chr5.1:26286718-26286737 | None:intergenic | 35.0% |
| !! | TTTTGACTGGATAAACCAGA+TGG | - | chr5.1:26285377-26285396 | None:intergenic | 35.0% |
| !!! | GCTGCGATGGTTTTTTTTTT+TGG | + | chr5.1:26284701-26284720 | MS.gene055463:intron | 35.0% |
| AAGACAAGCATGTTTGGACT+AGG | + | chr5.1:26287248-26287267 | MS.gene055463:CDS | 40.0% | |
| AATTCGGGATGATAAATCCC+TGG | + | chr5.1:26286650-26286669 | MS.gene055463:intron | 40.0% | |
| AGAGGAGTTGTTCTACCTAA+AGG | + | chr5.1:26284955-26284974 | MS.gene055463:CDS | 40.0% | |
| ATATCGGTGAAGAACTTCTC+GGG | + | chr5.1:26284541-26284560 | MS.gene055463:CDS | 40.0% | |
| ATGTAGAAAAATGAGCGCGA+AGG | - | chr5.1:26286917-26286936 | None:intergenic | 40.0% | |
| ATTTGGAGAAGGCTCGATAA+CGG | + | chr5.1:26285873-26285892 | MS.gene055463:intron | 40.0% | |
| CAAAGTCAAGCAGATGTGTT+AGG | - | chr5.1:26287020-26287039 | None:intergenic | 40.0% | |
| CATGGGTAATAACTTCAGGT+GGG | - | chr5.1:26285507-26285526 | None:intergenic | 40.0% | |
| CCTCTGTCTTATGGAAGATA+AGG | + | chr5.1:26287721-26287740 | MS.gene055463:intron | 40.0% | |
| CCTTATCTTCCATAAGACAG+AGG | - | chr5.1:26287724-26287743 | None:intergenic | 40.0% | |
| CTAACACATCTGCTTGACTT+TGG | + | chr5.1:26287018-26287037 | MS.gene055463:intron | 40.0% | |
| CTTGAATTTAAGGGCAAGGA+GGG | + | chr5.1:26287167-26287186 | MS.gene055463:CDS | 40.0% | |
| GAAAAGAGTCACAGGTAACT+AGG | - | chr5.1:26287672-26287691 | None:intergenic | 40.0% | |
| GAAAGGCAGCAAGTATGTAT+TGG | + | chr5.1:26287136-26287155 | MS.gene055463:CDS | 40.0% | |
| GAGTCCTATCTTGAACAAAG+AGG | + | chr5.1:26284937-26284956 | MS.gene055463:CDS | 40.0% | |
| GATATCGGTGAAGAACTTCT+CGG | + | chr5.1:26284540-26284559 | MS.gene055463:CDS | 40.0% | |
| GATGATAAATCCCTGGTTTC+CGG | + | chr5.1:26286657-26286676 | MS.gene055463:intron | 40.0% | |
| GGAAAACTATCTCTTCTCAG+AGG | - | chr5.1:26286689-26286708 | None:intergenic | 40.0% | |
| GGAATGGTACTGCAAATACA+AGG | - | chr5.1:26285472-26285491 | None:intergenic | 40.0% | |
| GGGAGAGTTCCTTGAATTTA+AGG | + | chr5.1:26287157-26287176 | MS.gene055463:CDS | 40.0% | |
| GTATTAGGTGTGGAAGGAAA+TGG | + | chr5.1:26284825-26284844 | MS.gene055463:intron | 40.0% | |
| GTTCCTTGAATTTAAGGGCA+AGG | + | chr5.1:26287163-26287182 | MS.gene055463:CDS | 40.0% | |
| GTTGGAAGAAGTAAGAAAGC+AGG | + | chr5.1:26284903-26284922 | MS.gene055463:intron | 40.0% | |
| TCATGGGTAATAACTTCAGG+TGG | - | chr5.1:26285508-26285527 | None:intergenic | 40.0% | |
| TTATGAGGCTGTATTAGGTG+TGG | + | chr5.1:26284815-26284834 | MS.gene055463:intron | 40.0% | |
| TTGAATTTAAGGGCAAGGAG+GGG | + | chr5.1:26287168-26287187 | MS.gene055463:CDS | 40.0% | |
| TTGGGGTTATCTGTTGTACA+GGG | + | chr5.1:26286222-26286241 | MS.gene055463:intron | 40.0% | |
| TTTGTTCAAGATAGGACTCG+AGG | - | chr5.1:26284936-26284955 | None:intergenic | 40.0% | |
| ! | CCAAAATGTTCCTTTTGCCA+AGG | - | chr5.1:26286206-26286225 | None:intergenic | 40.0% |
| ! | CCTTGACAACACTTTTGCTT+AGG | + | chr5.1:26285774-26285793 | MS.gene055463:intron | 40.0% |
| ! | CCTTGGCAAAAGGAACATTT+TGG | + | chr5.1:26286203-26286222 | MS.gene055463:intron | 40.0% |
| ! | CGGTCAACTTTATGTTTTCC+TGG | - | chr5.1:26284610-26284629 | None:intergenic | 40.0% |
| ! | GCAACTTAAATTTGGGATGG+AGG | - | chr5.1:26286393-26286412 | None:intergenic | 40.0% |
| ! | GTCCAAACATGCTTGTCTTT+TGG | - | chr5.1:26287247-26287266 | None:intergenic | 40.0% |
| ! | TTTGGGGTTATCTGTTGTAC+AGG | + | chr5.1:26286221-26286240 | MS.gene055463:intron | 40.0% |
| !! | ATGTTTTCCTGGCTTTTCAC+AGG | - | chr5.1:26284599-26284618 | None:intergenic | 40.0% |
| !! | ATTTTGACAGTTCAAGGGGA+TGG | + | chr5.1:26284565-26284584 | MS.gene055463:CDS | 40.0% |
| !! | CCTAAGCAAAAGTGTTGTCA+AGG | - | chr5.1:26285777-26285796 | None:intergenic | 40.0% |
| !! | CGGGAATTTTGACAGTTCAA+GGG | + | chr5.1:26284560-26284579 | MS.gene055463:CDS | 40.0% |
| !! | GGGAATTTTGACAGTTCAAG+GGG | + | chr5.1:26284561-26284580 | MS.gene055463:CDS | 40.0% |
| !! | TCGGGAATTTTGACAGTTCA+AGG | + | chr5.1:26284559-26284578 | MS.gene055463:CDS | 40.0% |
| AAGAGGTTCCTTACAGGATC+AGG | - | chr5.1:26284637-26284656 | None:intergenic | 45.0% | |
| AGAGGTTCCTTACAGGATCA+GGG | - | chr5.1:26284636-26284655 | None:intergenic | 45.0% | |
| AGTTCAAGGGGATGGTAGTT+GGG | + | chr5.1:26284573-26284592 | MS.gene055463:CDS | 45.0% | |
| CAGTTGCACCAACTGTTCAT+GGG | - | chr5.1:26285524-26285543 | None:intergenic | 45.0% | |
| CCTCCTTGCCCTTAAATTCA+AGG | - | chr5.1:26287169-26287188 | None:intergenic | 45.0% | |
| CCTTGAATTTAAGGGCAAGG+AGG | + | chr5.1:26287166-26287185 | MS.gene055463:CDS | 45.0% | |
| GCTTTGCTGGGTCTATAAGT+AGG | - | chr5.1:26285995-26286014 | None:intergenic | 45.0% | |
| TCAGTTGCACCAACTGTTCA+TGG | - | chr5.1:26285525-26285544 | None:intergenic | 45.0% | |
| TGAATTTAAGGGCAAGGAGG+GGG | + | chr5.1:26287169-26287188 | MS.gene055463:CDS | 45.0% | |
| TGCACCCTACATAATAGGCT+CGG | + | chr5.1:26286948-26286967 | MS.gene055463:intron | 45.0% | |
| TGGGAAATCACTAGCAGGAA+TGG | - | chr5.1:26285488-26285507 | None:intergenic | 45.0% | |
| TGGGGAAATACCTTGGCAAA+AGG | + | chr5.1:26286193-26286212 | MS.gene055463:intron | 45.0% | |
| TTCCGTGACTACAGAACCAA+GGG | + | chr5.1:26287842-26287861 | MS.gene055463:CDS | 45.0% | |
| TTGCCCGAGCCTATTATGTA+GGG | - | chr5.1:26286955-26286974 | None:intergenic | 45.0% | |
| TTTCCGTGACTACAGAACCA+AGG | + | chr5.1:26287841-26287860 | MS.gene055463:CDS | 45.0% | |
| ! | AAAGAGTGTGCTCTCTAGCT+GGG | + | chr5.1:26285555-26285574 | MS.gene055463:CDS | 45.0% |
| ! | AGAGAGCACACTCTTTGTTC+CGG | - | chr5.1:26285551-26285570 | None:intergenic | 45.0% |
| !! | AGATTGTTTGGCTTGCAGGT+TGG | + | chr5.1:26287109-26287128 | MS.gene055463:intron | 45.0% |
| !! | ATTAGGATGTCTGGCTTTGC+TGG | - | chr5.1:26286008-26286027 | None:intergenic | 45.0% |
| !! | CAACAGATTGTTTGGCTTGC+AGG | + | chr5.1:26287105-26287124 | MS.gene055463:intron | 45.0% |
| !! | TTAGGATGTCTGGCTTTGCT+GGG | - | chr5.1:26286007-26286026 | None:intergenic | 45.0% |
| ATTTGGGTCCACACTCATCC+AGG | + | chr5.1:26286993-26287012 | MS.gene055463:intron | 50.0% | |
| CAAGCAGATGTGTTAGGACC+TGG | - | chr5.1:26287014-26287033 | None:intergenic | 50.0% | |
| CAGTTCAAGGGGATGGTAGT+TGG | + | chr5.1:26284572-26284591 | MS.gene055463:CDS | 50.0% | |
| CCTTAGCACAGCTCCGATAT+GGG | + | chr5.1:26285645-26285664 | MS.gene055463:CDS | 50.0% | |
| CTCTTCTCAGAGGATTGCTC+CGG | - | chr5.1:26286679-26286698 | None:intergenic | 50.0% | |
| GAGGCTGTATTAGGTGTGGA+AGG | + | chr5.1:26284819-26284838 | MS.gene055463:intron | 50.0% | |
| GCACCCTACATAATAGGCTC+GGG | + | chr5.1:26286949-26286968 | MS.gene055463:intron | 50.0% | |
| GGATGAGTGTGGACCCAAAT+AGG | - | chr5.1:26286993-26287012 | None:intergenic | 50.0% | |
| GTTGCCCGAGCCTATTATGT+AGG | - | chr5.1:26286956-26286975 | None:intergenic | 50.0% | |
| TCAGGTGGGAAATCACTAGC+AGG | - | chr5.1:26285493-26285512 | None:intergenic | 50.0% | |
| TCCTTACAGGATCAGGGTGA+CGG | - | chr5.1:26284630-26284649 | None:intergenic | 50.0% | |
| TCCTTAGCACAGCTCCGATA+TGG | + | chr5.1:26285644-26285663 | MS.gene055463:CDS | 50.0% | |
| TGCGACGTGGTAGAGAATGA+AGG | - | chr5.1:26286892-26286911 | None:intergenic | 50.0% | |
| TGTTAGGACCTGGATGAGTG+TGG | - | chr5.1:26287004-26287023 | None:intergenic | 50.0% | |
| ! | CAAAGAGTGTGCTCTCTAGC+TGG | + | chr5.1:26285554-26285573 | MS.gene055463:CDS | 50.0% |
| ! | GAGAGCACACTCTTTGTTCC+GGG | - | chr5.1:26285550-26285569 | None:intergenic | 50.0% |
| ! | GCTTGCAGGTTGGAACTGAA+AGG | + | chr5.1:26287119-26287138 | MS.gene055463:intron | 50.0% |
| !! | CTCCCTTGGTTCTGTAGTCA+CGG | - | chr5.1:26287847-26287866 | None:intergenic | 50.0% |
| ACCGTCACCCTGATCCTGTA+AGG | + | chr5.1:26284626-26284645 | MS.gene055463:intron | 55.0% | |
| ACGGTCACTTCGTTCCACTC+TGG | - | chr5.1:26287878-26287897 | None:intergenic | 55.0% | |
| AGAGGATTGCTCCGGAAACC+AGG | - | chr5.1:26286671-26286690 | None:intergenic | 55.0% | |
| AGTTGGGCCTGTGAAAAGCC+AGG | + | chr5.1:26284589-26284608 | MS.gene055463:CDS | 55.0% | |
| CCCATATCGGAGCTGTGCTA+AGG | - | chr5.1:26285648-26285667 | None:intergenic | 55.0% | |
| GAGGATTGCTCCGGAAACCA+GGG | - | chr5.1:26286670-26286689 | None:intergenic | 55.0% | |
| GCACAGCTCCGATATGGGAT+AGG | + | chr5.1:26285650-26285669 | MS.gene055463:CDS | 55.0% | |
| ! | CAGTTGGTGCAACTGAAGCC+CGG | + | chr5.1:26285529-26285548 | MS.gene055463:CDS | 55.0% |
| !! | GCTCTAAGAGGTTGGGCAGA+GGG | - | chr5.1:26286710-26286729 | None:intergenic | 55.0% |
| !! | TGCTCTAAGAGGTTGGGCAG+AGG | - | chr5.1:26286711-26286730 | None:intergenic | 55.0% |
| !! | AGGGAGCATCAGCACCAGAG+TGG | + | chr5.1:26287861-26287880 | MS.gene055463:CDS | 60.0% |
| !! | CTCTGGTGCTGATGCTCCCT+TGG | - | chr5.1:26287861-26287880 | None:intergenic | 60.0% |
| GAGCGCGAAGGAATGCGACG+TGG | - | chr5.1:26286905-26286924 | None:intergenic | 65.0% | |
| GGGCAAGGAGGGGGATGTTG+AGG | + | chr5.1:26287178-26287197 | MS.gene055463:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26284528 | 26287904 | 26284528 | ID=MS.gene055463 |
| chr5.1 | mRNA | 26284528 | 26287904 | 26284528 | ID=MS.gene055463.t1;Parent=MS.gene055463 |
| chr5.1 | exon | 26284528 | 26284642 | 26284528 | ID=MS.gene055463.t1.exon1;Parent=MS.gene055463.t1 |
| chr5.1 | CDS | 26284528 | 26284642 | 26284528 | ID=cds.MS.gene055463.t1;Parent=MS.gene055463.t1 |
| chr5.1 | exon | 26284904 | 26285019 | 26284904 | ID=MS.gene055463.t1.exon2;Parent=MS.gene055463.t1 |
| chr5.1 | CDS | 26284904 | 26285019 | 26284904 | ID=cds.MS.gene055463.t1;Parent=MS.gene055463.t1 |
| chr5.1 | exon | 26285483 | 26285671 | 26285483 | ID=MS.gene055463.t1.exon3;Parent=MS.gene055463.t1 |
| chr5.1 | CDS | 26285483 | 26285671 | 26285483 | ID=cds.MS.gene055463.t1;Parent=MS.gene055463.t1 |
| chr5.1 | exon | 26287127 | 26287269 | 26287127 | ID=MS.gene055463.t1.exon4;Parent=MS.gene055463.t1 |
| chr5.1 | CDS | 26287127 | 26287269 | 26287127 | ID=cds.MS.gene055463.t1;Parent=MS.gene055463.t1 |
| chr5.1 | exon | 26287813 | 26287904 | 26287813 | ID=MS.gene055463.t1.exon5;Parent=MS.gene055463.t1 |
| chr5.1 | CDS | 26287813 | 26287904 | 26287813 | ID=cds.MS.gene055463.t1;Parent=MS.gene055463.t1 |
| Gene Sequence |
| Protein sequence |
