AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055523

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055523.t1 MTR_3g098810 93.776 241 15 0 1 241 1 241 1.43e-148 414
MS.gene055523.t1 MTR_8g099750 69.903 206 49 3 1 206 1 193 5.75e-102 295
MS.gene055523.t1 MTR_3g098810 95.455 154 7 0 1 154 1 154 1.35e-100 290
MS.gene055523.t1 MTR_7g005280 62.011 179 56 5 1 178 1 168 4.52e-72 221
MS.gene055523.t1 MTR_7g085220 48.810 168 77 3 12 172 6 171 3.70e-52 172
MS.gene055523.t1 MTR_2g080010 49.711 173 75 4 14 176 15 185 1.98e-50 168
MS.gene055523.t1 MTR_4g081870 49.693 163 74 3 12 172 7 163 4.38e-50 165
MS.gene055523.t1 MTR_3g088110 47.802 182 81 5 13 192 6 175 5.04e-50 165
MS.gene055523.t1 MTR_5g041940 50.000 160 72 3 14 171 3 156 2.40e-49 162
MS.gene055523.t1 MTR_8g094580 48.780 164 75 3 10 171 3 159 6.29e-49 162
MS.gene055523.t1 MTR_4g089135 46.667 180 75 3 13 173 14 191 7.62e-49 164
MS.gene055523.t1 MTR_2g093810 50.877 171 71 5 14 182 14 173 1.33e-48 162
MS.gene055523.t1 MTR_2157s0010 44.565 184 89 4 14 185 8 190 3.85e-48 160
MS.gene055523.t1 MTR_7g100990 48.125 160 77 3 13 170 10 165 4.38e-48 161
MS.gene055523.t1 MTR_8g059170 48.171 164 73 4 14 174 14 168 5.65e-46 156
MS.gene055523.t1 MTR_2g079990 48.148 162 72 3 14 173 16 167 1.08e-45 156
MS.gene055523.t1 MTR_3g096920 46.341 164 78 3 10 171 3 158 2.60e-45 153
MS.gene055523.t1 MTR_5g012080 46.471 170 72 5 9 171 2 159 8.33e-44 151
MS.gene055523.t1 MTR_4g101680 43.931 173 80 4 9 176 2 162 1.26e-43 150
MS.gene055523.t1 MTR_2g068880 39.336 211 102 4 6 190 13 223 1.41e-43 149
MS.gene055523.t1 MTR_8g076110 45.455 165 73 3 14 173 6 158 1.86e-43 149
MS.gene055523.t1 MTR_4g036030 46.429 168 73 5 9 171 2 157 2.23e-43 150
MS.gene055523.t1 MTR_5g090970 47.170 159 79 3 16 170 20 177 4.84e-43 148
MS.gene055523.t1 MTR_5g090970 46.875 160 79 3 16 170 20 178 7.13e-43 147
MS.gene055523.t1 MTR_5g021710 46.988 166 71 4 14 174 8 161 2.45e-42 147
MS.gene055523.t1 MTR_8g024480 44.186 172 82 4 9 171 10 176 3.92e-42 148
MS.gene055523.t1 MTR_3g064580 47.531 162 70 4 14 170 6 157 3.95e-42 152
MS.gene055523.t1 MTR_2g062730 43.529 170 80 5 10 174 6 164 6.82e-42 145
MS.gene055523.t1 MTR_4g108760 41.341 179 93 5 14 188 17 187 8.04e-42 146
MS.gene055523.t1 MTR_5g076850 45.342 161 74 3 14 170 6 156 9.36e-42 150
MS.gene055523.t1 MTR_5g069030 44.379 169 80 3 11 175 22 180 1.32e-41 150
MS.gene055523.t1 MTR_3g435150 44.444 162 80 4 14 173 16 169 1.70e-41 144
MS.gene055523.t1 MTR_2g068920 37.915 211 110 5 16 205 23 233 1.89e-41 143
MS.gene055523.t1 MTR_6g084430 42.767 159 77 3 14 170 5 151 3.19e-41 144
MS.gene055523.t1 MTR_8g467490 41.436 181 99 3 1 176 1 179 3.30e-41 145
MS.gene055523.t1 MTR_3g109340 43.210 162 81 3 14 173 22 174 3.77e-41 144
MS.gene055523.t1 MTR_3g109340 43.210 162 80 3 14 173 22 173 4.42e-41 144
MS.gene055523.t1 MTR_6g011860 41.808 177 95 3 2 173 3 176 4.70e-41 144
MS.gene055523.t1 MTR_1g096430 43.605 172 78 4 14 179 7 165 5.05e-41 143
MS.gene055523.t1 MTR_3g093040 42.262 168 83 3 14 177 108 265 5.48e-41 142
MS.gene055523.t1 MTR_3g093050 43.275 171 83 3 11 177 19 179 8.20e-41 147
MS.gene055523.t1 MTR_5g040420 39.896 193 101 4 16 195 16 206 1.23e-40 144
MS.gene055523.t1 MTR_3g093050 43.275 171 83 3 11 177 19 179 1.27e-40 147
MS.gene055523.t1 MTR_3g096920 39.000 200 77 4 10 171 3 195 1.33e-40 142
MS.gene055523.t1 MTR_2g079990 41.848 184 79 3 14 173 16 195 2.25e-40 142
MS.gene055523.t1 MTR_6g477900 37.688 199 101 4 14 199 6 194 4.96e-40 138
MS.gene055523.t1 MTR_3g070030 44.311 167 84 3 7 171 12 171 5.43e-40 141
MS.gene055523.t1 MTR_5g014300 43.452 168 79 4 10 170 2 160 8.03e-40 140
MS.gene055523.t1 MTR_1g008740 38.806 201 98 6 14 202 13 200 8.39e-40 140
MS.gene055523.t1 MTR_1g008740 38.806 201 98 6 14 202 27 214 9.97e-40 140
MS.gene055523.t1 MTR_6g012670 43.558 163 76 4 13 170 19 170 1.27e-39 139
MS.gene055523.t1 MTR_4g035590 44.172 163 73 4 14 171 8 157 1.61e-39 140
MS.gene055523.t1 MTR_7g085260 40.223 179 96 5 14 186 17 190 1.02e-38 138
MS.gene055523.t1 MTR_2g078700 42.236 161 85 4 12 170 21 175 1.11e-38 138
MS.gene055523.t1 MTR_2g064090 42.857 161 79 3 14 170 6 157 1.96e-38 137
MS.gene055523.t1 MTR_1g069805 42.683 164 80 4 12 173 8 159 2.07e-38 135
MS.gene055523.t1 MTR_4g098630 44.720 161 78 4 14 170 6 159 4.28e-38 135
MS.gene055523.t1 MTR_3g096140 41.875 160 79 3 16 171 9 158 5.21e-38 134
MS.gene055523.t1 MTR_3g096140 41.875 160 79 3 16 171 9 158 3.55e-37 134
MS.gene055523.t1 MTR_6g032770 40.964 166 88 5 14 177 18 175 7.43e-37 133
MS.gene055523.t1 MTR_4g134460 42.945 163 78 4 16 176 56 205 8.21e-37 134
MS.gene055523.t1 MTR_7g097090 43.396 159 76 4 12 168 8 154 3.36e-36 129
MS.gene055523.t1 MTR_2g064470 39.877 163 85 5 12 172 9 160 1.87e-35 128
MS.gene055523.t1 MTR_3g116070 47.368 133 65 3 14 143 23 153 2.55e-35 129
MS.gene055523.t1 MTR_4g075980 44.755 143 74 3 1 141 4 143 2.65e-35 127
MS.gene055523.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 2.99e-35 128
MS.gene055523.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 5.90e-35 129
MS.gene055523.t1 MTR_1g097300 42.138 159 78 3 16 170 21 169 1.00e-34 130
MS.gene055523.t1 MTR_7g011120 38.235 170 96 3 7 171 1 166 1.08e-34 126
MS.gene055523.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 1.74e-34 128
MS.gene055523.t1 MTR_8g093580 39.157 166 87 3 10 171 2 157 1.97e-34 129
MS.gene055523.t1 MTR_7g011130 37.640 178 92 4 7 171 12 183 3.03e-34 126
MS.gene055523.t1 MTR_8g023860 39.877 163 79 5 11 168 9 157 1.13e-33 125
MS.gene055523.t1 MTR_1g090720 43.478 161 83 2 14 170 42 198 1.19e-33 126
MS.gene055523.t1 MTR_1g090723 41.566 166 75 7 16 173 10 161 1.30e-33 127
MS.gene055523.t1 MTR_1g090723 41.566 166 75 7 16 173 10 161 1.87e-33 127
MS.gene055523.t1 MTR_1g090723 41.566 166 76 7 16 173 10 162 3.42e-33 126
MS.gene055523.t1 MTR_8g023840 41.509 159 74 6 14 167 11 155 4.35e-33 124
MS.gene055523.t1 MTR_3g070040 42.857 154 81 4 18 171 12 158 9.48e-33 121
MS.gene055523.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 2.80e-32 123
MS.gene055523.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 2.85e-32 124
MS.gene055523.t1 MTR_4g094302 35.802 162 94 3 14 174 11 163 7.52e-32 115
MS.gene055523.t1 MTR_0036s0150 40.361 166 77 6 16 173 7 158 2.02e-31 121
MS.gene055523.t1 MTR_8g094580 48.148 108 49 2 64 171 5 105 1.36e-30 113
MS.gene055523.t1 MTR_8g023930 37.500 168 86 5 14 176 24 177 1.69e-30 118
MS.gene055523.t1 MTR_3g096140 38.776 147 76 3 29 171 1 137 1.36e-29 113
MS.gene055523.t1 MTR_8g023900 37.576 165 84 5 17 176 196 346 5.67e-29 114
MS.gene055523.t1 MTR_8g023900 33.951 162 90 6 14 170 12 161 6.15e-23 97.1
MS.gene055523.t1 MTR_4g094302 41.860 129 65 3 14 141 11 130 7.79e-29 107
MS.gene055523.t1 MTR_2g086690 38.650 163 86 4 15 169 5 161 1.45e-28 108
MS.gene055523.t1 MTR_4g052620 39.759 166 81 6 14 169 5 161 1.80e-28 108
MS.gene055523.t1 MTR_7g105170 33.728 169 96 6 14 172 4 166 3.23e-25 100
MS.gene055523.t1 MTR_7g070140 58.228 79 31 1 65 143 17 93 3.79e-25 96.7
MS.gene055523.t1 MTR_8g093790 35.185 162 73 7 13 172 9 140 4.77e-24 95.1
MS.gene055523.t1 MTR_8g023880 30.899 178 86 7 12 170 5 164 7.04e-21 89.0
MS.gene055523.t1 MTR_3g096400 31.902 163 95 6 13 168 6 159 1.63e-19 84.0
MS.gene055523.t1 MTR_7g070150 43.333 90 33 3 112 201 8 79 1.90e-17 75.1
MS.gene055523.t1 MTR_7g116460 30.688 189 101 10 20 198 11 179 1.39e-13 67.8
MS.gene055523.t1 MTR_7g083330 29.771 131 82 4 13 139 17 141 1.74e-12 64.7
MS.gene055523.t1 MTR_7g083360 29.197 137 87 4 7 139 3 133 9.29e-12 61.6
MS.gene055523.t1 MTR_7g083370 30.935 139 82 6 7 139 3 133 9.71e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055523.t1 AT5G13180 51.101 227 70 5 1 203 1 210 2.60e-68 211
MS.gene055523.t1 AT2G33480 57.714 175 62 5 1 174 1 164 1.87e-64 202
MS.gene055523.t1 AT2G33480 56.571 175 62 4 1 174 1 162 4.82e-64 201
MS.gene055523.t1 AT3G04070 49.432 176 77 4 8 175 4 175 3.13e-54 177
MS.gene055523.t1 AT1G01720 39.381 226 124 5 13 236 6 220 2.72e-51 169
MS.gene055523.t1 AT3G04070 45.745 188 82 4 8 175 4 191 1.43e-50 169
MS.gene055523.t1 AT1G77450 46.032 189 85 5 6 185 1 181 1.97e-50 165
MS.gene055523.t1 AT1G61110 48.333 180 72 4 7 173 9 180 1.74e-49 165
MS.gene055523.t1 AT1G69490 48.765 162 75 3 12 171 7 162 4.07e-49 162
MS.gene055523.t1 AT3G15510 47.305 167 79 3 18 177 21 185 3.42e-47 160
MS.gene055523.t1 AT4G27410 46.541 159 73 3 14 170 14 162 2.62e-46 156
MS.gene055523.t1 AT5G08790 48.750 160 74 3 14 171 7 160 2.63e-46 155
MS.gene055523.t1 AT5G39610 45.930 172 79 5 14 181 20 181 4.17e-46 155
MS.gene055523.t1 AT4G17980 46.061 165 79 3 10 170 2 160 2.69e-45 152
MS.gene055523.t1 AT1G52890 47.531 162 73 3 14 173 14 165 2.72e-45 154
MS.gene055523.t1 AT1G12260 45.349 172 77 4 9 175 2 161 6.93e-45 154
MS.gene055523.t1 AT3G15500 44.199 181 85 4 14 192 14 180 7.28e-45 153
MS.gene055523.t1 AT4G17980 46.061 165 79 3 10 170 2 160 8.47e-45 152
MS.gene055523.t1 AT1G52880 48.750 160 78 2 18 173 21 180 1.71e-44 152
MS.gene055523.t1 AT5G46590 45.000 180 79 4 10 185 2 165 1.85e-44 151
MS.gene055523.t1 AT1G12260 45.349 172 77 4 9 175 2 161 2.39e-44 153
MS.gene055523.t1 AT5G63790 46.875 160 77 3 14 171 50 203 4.06e-44 150
MS.gene055523.t1 AT5G63790 46.875 160 77 3 14 171 60 213 5.10e-44 150
MS.gene055523.t1 AT4G27410 43.182 176 71 4 14 170 14 179 7.74e-44 150
MS.gene055523.t1 AT1G62700 46.429 168 73 4 9 171 2 157 1.12e-43 152
MS.gene055523.t1 AT1G62700 46.429 168 73 4 9 171 2 157 1.12e-43 152
MS.gene055523.t1 AT5G39820 44.767 172 76 4 16 170 22 191 1.46e-43 150
MS.gene055523.t1 AT5G07680 44.578 166 82 4 14 177 3 160 1.84e-43 149
MS.gene055523.t1 AT1G33060 46.584 161 72 3 14 170 24 174 1.92e-43 155
MS.gene055523.t1 AT5G07680 44.578 166 82 4 14 177 17 174 2.16e-43 149
MS.gene055523.t1 AT1G33060 46.584 161 72 3 14 170 24 174 2.33e-43 155
MS.gene055523.t1 AT5G61430 44.578 166 82 4 14 177 16 173 3.31e-43 149
MS.gene055523.t1 AT5G66300 40.444 225 111 8 14 231 12 220 3.60e-43 148
MS.gene055523.t1 AT1G65910 47.205 161 71 3 14 170 6 156 4.60e-43 154
MS.gene055523.t1 AT5G62380 42.353 170 81 3 11 175 4 161 6.93e-43 148
MS.gene055523.t1 AT5G62380 42.353 170 81 3 11 175 4 161 6.93e-43 148
MS.gene055523.t1 AT4G36160 46.626 163 70 4 14 171 10 160 9.88e-43 149
MS.gene055523.t1 AT4G36160 46.626 163 70 4 14 171 10 160 9.88e-43 149
MS.gene055523.t1 AT4G36160 46.626 163 70 4 14 171 14 164 1.03e-42 149
MS.gene055523.t1 AT5G46590 48.052 154 71 3 10 159 2 150 1.55e-42 145
MS.gene055523.t1 AT3G10490 45.062 162 74 4 14 170 27 178 3.53e-42 144
MS.gene055523.t1 AT3G10480 45.342 161 74 3 14 170 27 177 4.46e-42 149
MS.gene055523.t1 AT1G79580 45.509 167 74 5 10 171 13 167 4.59e-42 147
MS.gene055523.t1 AT1G79580 45.509 167 74 5 10 171 13 167 4.59e-42 147
MS.gene055523.t1 AT1G79580 45.509 167 74 5 10 171 13 167 4.59e-42 147
MS.gene055523.t1 AT1G79580 45.509 167 74 5 10 171 13 167 4.59e-42 147
MS.gene055523.t1 AT1G79580 45.509 167 74 5 10 171 13 167 4.59e-42 147
MS.gene055523.t1 AT2G18060 46.012 163 71 4 14 171 9 159 5.06e-42 147
MS.gene055523.t1 AT2G18060 46.012 163 71 4 14 171 9 159 5.06e-42 147
MS.gene055523.t1 AT4G35580 44.643 168 75 4 14 175 9 164 5.43e-42 150
MS.gene055523.t1 AT4G35580 44.643 168 75 4 14 175 9 164 5.85e-42 150
MS.gene055523.t1 AT2G46770 43.182 176 82 5 9 171 11 181 5.87e-42 146
MS.gene055523.t1 AT4G35580 46.012 163 70 4 14 170 9 159 5.97e-42 149
MS.gene055523.t1 AT3G04060 42.286 175 80 4 11 177 17 178 6.53e-42 145
MS.gene055523.t1 AT3G03200 45.963 161 74 5 14 170 6 157 2.12e-41 147
MS.gene055523.t1 AT1G33280 44.172 163 73 3 14 171 8 157 2.86e-41 143
MS.gene055523.t1 AT5G17260 45.679 162 73 4 14 170 6 157 3.26e-41 147
MS.gene055523.t1 AT3G10480 45.679 162 73 4 14 170 27 178 3.40e-41 146
MS.gene055523.t1 AT1G32770 42.222 180 87 5 3 171 5 178 3.44e-41 144
MS.gene055523.t1 AT1G71930 44.253 174 79 5 12 179 7 168 4.63e-41 143
MS.gene055523.t1 AT1G71930 44.253 174 79 5 12 179 7 168 4.63e-41 143
MS.gene055523.t1 AT4G10350 43.558 163 77 3 14 171 9 161 7.68e-41 143
MS.gene055523.t1 AT3G61910 41.111 180 88 5 4 170 1 175 9.05e-41 142
MS.gene055523.t1 AT3G10490 45.062 162 74 4 14 170 27 178 1.33e-40 145
MS.gene055523.t1 AT3G18400 44.025 159 76 4 14 170 5 152 3.44e-40 140
MS.gene055523.t1 AT1G32510 44.186 172 84 3 12 176 4 170 3.76e-40 140
MS.gene055523.t1 AT3G17730 44.099 161 76 4 14 170 6 156 4.77e-40 138
MS.gene055523.t1 AT3G29035 49.231 130 60 2 14 141 24 149 8.28e-40 140
MS.gene055523.t1 AT1G76420 41.520 171 85 4 14 180 22 181 8.77e-40 140
MS.gene055523.t1 AT2G24430 41.358 162 84 3 14 173 16 168 9.28e-40 139
MS.gene055523.t1 AT2G24430 41.358 162 84 3 14 173 16 168 9.28e-40 139
MS.gene055523.t1 AT1G26870 45.062 162 82 3 14 170 16 175 1.34e-39 141
MS.gene055523.t1 AT2G43000 47.134 157 72 5 16 170 20 167 1.96e-39 137
MS.gene055523.t1 AT5G18270 42.012 169 89 4 4 170 11 172 4.73e-39 138
MS.gene055523.t1 AT5G18270 42.012 169 89 4 4 170 11 172 5.04e-39 138
MS.gene055523.t1 AT5G24590 35.652 230 133 5 11 235 10 229 8.17e-39 140
MS.gene055523.t1 AT1G54330 40.476 168 80 4 14 177 6 157 2.42e-38 135
MS.gene055523.t1 AT5G53950 42.767 159 83 4 14 170 17 169 4.08e-38 137
MS.gene055523.t1 AT2G17040 41.875 160 79 4 16 173 8 155 7.64e-38 133
MS.gene055523.t1 AT3G12977 38.150 173 94 4 14 183 18 180 1.56e-37 133
MS.gene055523.t1 AT2G02450 42.945 163 78 5 16 176 53 202 1.91e-37 135
MS.gene055523.t1 AT2G02450 42.945 163 78 5 16 176 53 202 2.85e-37 135
MS.gene055523.t1 AT3G10500 42.442 172 81 4 8 173 3 162 4.98e-37 136
MS.gene055523.t1 AT3G15170 38.323 167 83 4 12 170 18 172 7.47e-37 132
MS.gene055523.t1 AT1G56010 38.690 168 91 5 12 175 17 176 3.06e-36 130
MS.gene055523.t1 AT3G10480 38.974 195 71 5 14 170 27 211 3.21e-36 134
MS.gene055523.t1 AT3G49530 38.889 162 86 3 14 171 13 165 1.23e-35 130
MS.gene055523.t1 AT3G12910 42.073 164 85 4 16 170 23 185 1.41e-35 128
MS.gene055523.t1 AT3G49530 38.889 162 86 3 14 171 13 165 3.03e-35 130
MS.gene055523.t1 AT1G34190 41.509 159 79 3 16 170 18 166 7.42e-35 130
MS.gene055523.t1 AT5G04410 39.521 167 87 3 8 170 3 159 1.99e-34 129
MS.gene055523.t1 AT1G34180 40.881 159 80 3 16 170 18 166 8.05e-34 126
MS.gene055523.t1 AT2G33480 52.586 116 44 4 59 174 3 107 1.25e-33 120
MS.gene055523.t1 AT1G34180 43.750 144 73 2 16 155 18 157 2.25e-33 127
MS.gene055523.t1 AT4G28530 40.217 184 80 6 7 172 3 174 5.86e-33 122
MS.gene055523.t1 AT1G34180 38.596 171 79 3 16 170 18 178 7.13e-33 124
MS.gene055523.t1 AT5G09330 41.212 165 83 3 10 170 2 156 1.54e-32 124
MS.gene055523.t1 AT5G09330 41.212 165 83 3 10 170 2 156 1.54e-32 124
MS.gene055523.t1 AT5G09330 41.212 165 83 3 10 170 2 156 1.54e-32 124
MS.gene055523.t1 AT5G09330 41.212 165 83 3 10 170 2 156 1.54e-32 124
MS.gene055523.t1 AT5G09330 41.212 165 83 3 10 170 2 156 1.54e-32 124
MS.gene055523.t1 AT1G34180 41.026 156 72 2 16 155 18 169 1.89e-32 124
MS.gene055523.t1 AT5G64060 38.182 165 88 3 10 170 2 156 1.73e-31 119
MS.gene055523.t1 AT5G04395 39.583 144 71 2 14 142 28 170 2.14e-30 112
MS.gene055523.t1 AT3G44290 36.301 146 86 2 7 149 7 148 2.82e-30 112
MS.gene055523.t1 AT5G50820 36.364 176 101 5 5 177 7 174 8.63e-30 110
MS.gene055523.t1 AT2G27300 40.602 133 72 2 10 139 10 138 8.86e-30 114
MS.gene055523.t1 AT3G44290 28.968 252 140 6 7 240 7 237 9.44e-30 114
MS.gene055523.t1 AT5G22290 39.370 127 70 2 16 139 23 145 9.36e-29 111
MS.gene055523.t1 AT4G01520 43.796 137 68 5 15 144 5 139 1.14e-26 105
MS.gene055523.t1 AT4G01550 40.881 159 77 5 17 170 7 153 1.93e-26 106
MS.gene055523.t1 AT1G32870 40.113 177 88 6 7 178 5 168 2.31e-26 107
MS.gene055523.t1 AT1G32870 40.113 177 88 6 7 178 41 204 2.84e-26 107
MS.gene055523.t1 AT1G32870 40.113 177 88 6 7 178 5 168 2.86e-26 106
MS.gene055523.t1 AT5G64530 35.465 172 89 5 14 176 3 161 3.55e-26 100
MS.gene055523.t1 AT4G01540 43.704 135 67 5 17 144 7 139 3.81e-26 105
MS.gene055523.t1 AT4G01540 43.704 135 67 5 17 144 7 139 4.47e-26 105
MS.gene055523.t1 AT4G01540 43.704 135 67 5 17 144 7 139 5.80e-26 105
MS.gene055523.t1 AT4G01540 43.704 135 67 5 17 144 7 139 7.78e-26 104
MS.gene055523.t1 AT5G64530 41.860 129 61 4 14 141 3 118 2.33e-25 97.8
MS.gene055523.t1 AT5G61430 43.860 114 56 3 64 177 5 110 5.91e-25 99.8
MS.gene055523.t1 AT3G12977 41.379 116 57 3 63 177 16 121 2.15e-24 97.4
MS.gene055523.t1 AT4G10350 43.243 111 53 2 61 171 14 114 3.54e-24 98.2
MS.gene055523.t1 AT1G02230 39.456 147 76 5 15 155 4 143 5.10e-24 99.0
MS.gene055523.t1 AT3G44350 35.758 165 91 5 17 174 8 164 1.30e-23 95.5
MS.gene055523.t1 AT5G14000 30.994 171 103 3 6 174 7 164 1.62e-23 94.4
MS.gene055523.t1 AT1G56010 40.708 113 58 3 64 175 5 109 2.03e-23 95.5
MS.gene055523.t1 AT5G14000 33.562 146 91 2 7 150 8 149 3.96e-23 92.0
MS.gene055523.t1 AT5G22380 32.990 194 111 6 17 198 8 194 4.62e-23 94.0
MS.gene055523.t1 AT3G44350 36.486 148 82 4 17 157 8 150 1.86e-22 90.5
MS.gene055523.t1 AT3G10490 47.727 88 35 3 84 170 1 78 3.04e-20 88.6
MS.gene055523.t1 AT3G10490 47.727 88 35 3 84 170 1 78 3.04e-20 88.6
MS.gene055523.t1 AT1G02250 34.591 159 84 6 15 167 4 148 3.65e-19 85.5
MS.gene055523.t1 AT1G01010 38.806 134 68 5 17 139 6 136 1.68e-18 84.0
MS.gene055523.t1 AT2G43000 48.936 94 39 4 77 170 5 89 2.13e-18 80.9
MS.gene055523.t1 AT3G04420 37.681 138 70 5 15 143 4 134 3.79e-18 82.0
MS.gene055523.t1 AT3G04420 37.681 138 70 5 15 143 4 134 4.84e-18 82.0
MS.gene055523.t1 AT2G18060 45.122 82 33 2 90 171 2 71 1.75e-16 77.0
MS.gene055523.t1 AT4G28530 41.228 114 49 3 7 102 3 116 2.50e-16 77.0
MS.gene055523.t1 AT3G56530 33.333 162 87 6 14 168 52 199 4.32e-16 76.6
MS.gene055523.t1 AT1G02220 34.839 155 79 6 15 156 4 149 3.10e-14 71.6
MS.gene055523.t1 AT5G50820 31.034 116 74 2 64 177 14 125 2.56e-11 60.5
MS.gene055523.t1 AT3G55210 27.374 179 94 7 14 173 11 172 7.16e-11 61.2
MS.gene055523.t1 AT3G04430 29.851 134 78 4 20 140 6 136 8.95e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGTGCTGTTTCGATACT+TGG 0.265925 3.2:+82236799 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3.2:-82236769 MS.gene055523:CDS
CAAAACTATGGAAACGAGAT+AGG 0.347341 3.2:-82236436 MS.gene055523:CDS
AAAAGAAGTAATATAGAAAT+CGG 0.379573 3.2:-82236382 MS.gene055523:CDS
CTCATAAAATCAAAGAATCT+TGG 0.393607 3.2:+82236307 None:intergenic
CAATGAGTTCGAGATCCATT+TGG 0.411374 3.2:+82236647 None:intergenic
ATTAGTATTCATCACCGTAT+TGG 0.436278 3.2:+82236345 None:intergenic
AATTGAAGCAGGCAATTGAT+AGG 0.447214 3.2:+82237062 None:intergenic
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3.2:-82236758 MS.gene055523:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3.2:-82236594 MS.gene055523:intron
TATCAAGGAAAATCTCCAAA+TGG 0.482794 3.2:-82236662 MS.gene055523:CDS
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3.2:+82236606 None:intergenic
ATGGAAACGAGATAGGGAAC+TGG 0.484070 3.2:-82236429 MS.gene055523:CDS
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3.2:+82237008 None:intergenic
CAAATGGATCTCGAACTCAT+TGG 0.497017 3.2:-82236646 MS.gene055523:CDS
GTTTCTTCATCACTAAGTAA+TGG 0.512585 3.2:-82236716 MS.gene055523:CDS
ATCTCAGGAATAATTGAAGC+AGG 0.517678 3.2:+82237051 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3.2:+82236763 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3.2:+82237036 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.532891 3.2:-82236707 MS.gene055523:CDS
TATGATCCCTGGGATTTGCC+AGG 0.534942 3.2:-82237015 MS.gene055523:intron
TGGGTGCAGATGCAAAACTA+TGG 0.562905 3.2:-82236448 MS.gene055523:intron
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3.2:-82237026 MS.gene055523:CDS
AAGACGAGCTCTTCGTCCGT+TGG 0.567604 3.2:+82237111 None:intergenic
GGTGTAAGCAGATTGCCTCC+TGG 0.568317 3.2:-82237147 MS.gene055523:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3.2:-82236825 MS.gene055523:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3.2:-82236776 MS.gene055523:CDS
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3.2:-82237025 MS.gene055523:CDS
AACCAACTCTGGTTATTGGA+AGG 0.581092 3.2:-82236765 MS.gene055523:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3.2:-82236287 MS.gene055523:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3.2:-82236708 MS.gene055523:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3.2:-82236236 MS.gene055523:CDS
AAAACTATGGAAACGAGATA+GGG 0.606762 3.2:-82236435 MS.gene055523:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3.2:-82236338 MS.gene055523:CDS
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3.2:+82237009 None:intergenic
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3.2:-82236857 MS.gene055523:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3.2:-82236359 MS.gene055523:CDS
TGGAAACGAGATAGGGAACT+GGG 0.648812 3.2:-82236428 MS.gene055523:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3.2:-82236211 MS.gene055523:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCAAATTATTTATATA+TGG + chr3.2:82236474-82236493 None:intergenic 10.0%
!! AAAAGAAGTAATATAGAAAT+CGG - chr3.2:82236981-82237000 MS.gene055523:intron 15.0%
!! ATAGCCATATATAAATAATT+TGG - chr3.2:82236467-82236486 MS.gene055523:intron 15.0%
!! AGGACTATATATATGATTAA+TGG + chr3.2:82236806-82236825 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG - chr3.2:82236686-82236705 MS.gene055523:CDS 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG - chr3.2:82237058-82237077 MS.gene055523:CDS 20.0%
!!! TTTTATGTATGTGTGTAATT+AGG - chr3.2:82236497-82236516 MS.gene055523:intron 20.0%
! CTCATAAAATCAAAGAATCT+TGG + chr3.2:82237059-82237078 None:intergenic 25.0%
!! AAGCTGAATTTTGTCAAAAA+TGG - chr3.2:82236195-82236214 MS.gene055523:CDS 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG - chr3.2:82237057-82237076 MS.gene055523:CDS 25.0%
AAAACTATGGAAACGAGATA+GGG - chr3.2:82236928-82236947 MS.gene055523:intron 30.0%
ATCTAGAAAAATGAGCAGTA+GGG + chr3.2:82237103-82237122 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG - chr3.2:82236895-82236914 MS.gene055523:intron 30.0%
ATTAGTATTCATCACCGTAT+TGG + chr3.2:82237021-82237040 None:intergenic 30.0%
GTTTCTTCATCACTAAGTAA+TGG - chr3.2:82236647-82236666 MS.gene055523:CDS 30.0%
TATCAAGGAAAATCTCCAAA+TGG - chr3.2:82236701-82236720 MS.gene055523:CDS 30.0%
TGCCTTAACTGTTAAATGTT+GGG - chr3.2:82236896-82236915 MS.gene055523:intron 30.0%
TGTGTGTAATTAGGAAATTG+TGG - chr3.2:82236506-82236525 MS.gene055523:intron 30.0%
TTACATGATGAAGACCAATA+CGG - chr3.2:82237004-82237023 MS.gene055523:intron 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG + chr3.2:82236826-82236845 None:intergenic 30.0%
AATTGAAGCAGGCAATTGAT+AGG + chr3.2:82236304-82236323 None:intergenic 35.0%
ATCTCAGGAATAATTGAAGC+AGG + chr3.2:82236315-82236334 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG - chr3.2:82236927-82236946 MS.gene055523:intron 35.0%
CACCCAACATTTAACAGTTA+AGG + chr3.2:82236901-82236920 None:intergenic 35.0%
CAGTAGTTTCTAAGCTAACT+AGG + chr3.2:82236760-82236779 None:intergenic 35.0%
GATCTAGAAAAATGAGCAGT+AGG + chr3.2:82237104-82237123 None:intergenic 35.0%
GGTGATGAATACTAATGTTG+AGG - chr3.2:82237025-82237044 MS.gene055523:CDS 35.0%
TAAGTATTTCTTCAGCAGCA+AGG - chr3.2:82236538-82236557 MS.gene055523:intron 35.0%
TCTTCATCAGAAGAAAGATG+CGG - chr3.2:82237152-82237171 MS.gene055523:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG - chr3.2:82236655-82236674 MS.gene055523:CDS 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG - chr3.2:82236236-82236255 MS.gene055523:CDS 35.0%
AACCAACTCTGGTTATTGGA+AGG - chr3.2:82236598-82236617 MS.gene055523:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG - chr3.2:82236769-82236788 MS.gene055523:CDS 40.0%
ATGAACAGAACAACCAACTC+TGG - chr3.2:82236587-82236606 MS.gene055523:intron 40.0%
CAAAGTGACAATGACCGAAT+TGG - chr3.2:82236835-82236854 MS.gene055523:CDS 40.0%
CAAATGGATCTCGAACTCAT+TGG - chr3.2:82236717-82236736 MS.gene055523:CDS 40.0%
CAATGAGTTCGAGATCCATT+TGG + chr3.2:82236719-82236738 None:intergenic 40.0%
GAACAACCAACTCTGGTTAT+TGG - chr3.2:82236594-82236613 MS.gene055523:intron 40.0%
GTTGGCTGAAAACAAAAACC+AGG + chr3.2:82236237-82236256 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG + chr3.2:82236330-82236349 None:intergenic 40.0%
! CAATTCGGTCATTGTCACTT+TGG + chr3.2:82236837-82236856 None:intergenic 40.0%
! TCACTAAGTAATGGAATCGC+GGG - chr3.2:82236656-82236675 MS.gene055523:CDS 40.0%
ATGGAAACGAGATAGGGAAC+TGG - chr3.2:82236934-82236953 MS.gene055523:intron 45.0%
ATGTCTGCAAGTATGATCCC+TGG - chr3.2:82236337-82236356 MS.gene055523:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG + chr3.2:82237098-82237117 None:intergenic 45.0%
GGCTGAAAACAAAAACCAGG+AGG + chr3.2:82236234-82236253 None:intergenic 45.0%
TAAGTACCTGGCAAATCCCA+GGG + chr3.2:82236357-82236376 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG - chr3.2:82236605-82236624 MS.gene055523:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG + chr3.2:82236852-82236871 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG - chr3.2:82236364-82236383 MS.gene055523:CDS 45.0%
TGCCTTCCAATAACCAGAGT+TGG + chr3.2:82236603-82236622 None:intergenic 45.0%
TGGAAACGAGATAGGGAACT+GGG - chr3.2:82236935-82236954 MS.gene055523:intron 45.0%
TGGGTGCAGATGCAAAACTA+TGG - chr3.2:82236915-82236934 MS.gene055523:intron 45.0%
TGTCTGCAAGTATGATCCCT+GGG - chr3.2:82236338-82236357 MS.gene055523:CDS 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG - chr3.2:82237127-82237146 MS.gene055523:CDS 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG + chr3.2:82236369-82236388 None:intergenic 45.0%
CTAAGTACCTGGCAAATCCC+AGG + chr3.2:82236358-82236377 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG - chr3.2:82236847-82236866 MS.gene055523:CDS 50.0%
TATGATCCCTGGGATTTGCC+AGG - chr3.2:82236348-82236367 MS.gene055523:CDS 50.0%
!! GCGAGTGCTGTTTCGATACT+TGG + chr3.2:82236567-82236586 None:intergenic 50.0%
AAGACGAGCTCTTCGTCCGT+TGG + chr3.2:82236255-82236274 None:intergenic 55.0%
GGTGTAAGCAGATTGCCTCC+TGG - chr3.2:82236216-82236235 MS.gene055523:CDS 55.0%
! GAGGGTACACAACTCAGCTC+CGG - chr3.2:82237076-82237095 MS.gene055523:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 82236189 82237196 82236189 ID=MS.gene055523
chr3.2 mRNA 82236189 82237196 82236189 ID=MS.gene055523.t1;Parent=MS.gene055523
chr3.2 exon 82237016 82237196 82237016 ID=MS.gene055523.t1.exon1;Parent=MS.gene055523.t1
chr3.2 CDS 82237016 82237196 82237016 ID=cds.MS.gene055523.t1;Parent=MS.gene055523.t1
chr3.2 exon 82236595 82236866 82236595 ID=MS.gene055523.t1.exon2;Parent=MS.gene055523.t1
chr3.2 CDS 82236595 82236866 82236595 ID=cds.MS.gene055523.t1;Parent=MS.gene055523.t1
chr3.2 exon 82236189 82236461 82236189 ID=MS.gene055523.t1.exon3;Parent=MS.gene055523.t1
chr3.2 CDS 82236189 82236461 82236189 ID=cds.MS.gene055523.t1;Parent=MS.gene055523.t1
Gene Sequence

>MS.gene055523

ATGGAAAAGCTGAATTTTGTCAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGTACTTAGCAAACTAGGCTCAACACAATCATGTTACTTTTGTGCTCTATAATATAATGTGACAGATCATAGATGTTAATACAAAAATGATTTAATATATAGCCATATATAAATAATTTGGTTAAATATTTTATGTATGTGTGTAATTAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGGTAATTAATATTCCATTAATCATATATATAGTCCTTTTTACAACCAAAGTGACAATGACCGAATTGGAGTAGATCGTGGCAGCAAAGTCACTCTATCACTTATAATGCCTTAACTGTTAAATGTTGGGTGCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAATCGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>MS.gene055523.t1

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIEIGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF