AlfalfaGEDB | MS.gene06247

M. sativa cultivar XinJiangDaYe / MS.gene06247

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06247.t1	XP_003602768.1	93.4	241	16	0	1	241	1	241	7.70E-128	466.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06247.t1	Q9FY93	60.6	170	57	3	1	170	1	160	2.2e-51	203.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06247.t1	G7J3B8	93.4	241	16	0	1	241	1	241	5.5e-128	466.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene06247.t1	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055523	MS.gene06247	0.820416	6.94E-53	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06247.t1	MTR_3g098810	93.361	241	16	0	1	241	1	241	2.45e-147	410
MS.gene06247.t1	MTR_8g099750	69.417	206	50	3	1	206	1	193	8.85e-101	292
MS.gene06247.t1	MTR_3g098810	94.805	154	8	0	1	154	1	154	3.24e-99	286
MS.gene06247.t1	MTR_7g005280	62.011	179	56	5	1	178	1	168	1.23e-71	219
MS.gene06247.t1	MTR_7g085220	48.810	168	77	3	12	172	6	171	6.68e-52	172
MS.gene06247.t1	MTR_2g080010	49.711	173	75	4	14	176	15	185	3.64e-50	167
MS.gene06247.t1	MTR_3g088110	47.027	185	84	5	13	195	6	178	8.72e-50	164
MS.gene06247.t1	MTR_4g081870	49.693	163	74	3	12	172	7	163	1.11e-49	164
MS.gene06247.t1	MTR_5g041940	50.000	160	72	3	14	171	3	156	5.00e-49	162
MS.gene06247.t1	MTR_4g089135	46.667	180	75	3	13	173	14	191	1.07e-48	163

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06247.t1	AT5G13180	51.101	227	70	5	1	203	1	210	1.04e-67	209
MS.gene06247.t1	AT2G33480	57.143	175	63	5	1	174	1	164	3.27e-63	198
MS.gene06247.t1	AT2G33480	56.000	175	63	4	1	174	1	162	7.84e-63	197
MS.gene06247.t1	AT3G04070	49.432	176	77	4	8	175	4	175	6.43e-54	177
MS.gene06247.t1	AT1G01720	39.381	226	124	5	13	236	6	220	6.36e-51	167
MS.gene06247.t1	AT3G04070	45.745	188	82	4	8	175	4	191	2.31e-50	168
MS.gene06247.t1	AT1G61110	49.153	177	69	4	10	173	12	180	3.88e-49	164
MS.gene06247.t1	AT1G77450	45.503	189	86	5	6	185	1	181	4.36e-49	162
MS.gene06247.t1	AT1G69490	48.765	162	75	3	12	171	7	162	9.33e-49	161
MS.gene06247.t1	AT3G15510	47.305	167	79	3	18	177	21	185	6.90e-47	159

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

Find 39 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATGGAAACGAGATA+GGG	0.606762	3.1:-78725498	MS.gene06247:CDS
AAAAGAAGTAATATAGAAAT+CGG	0.379573	3.1:-78725445	MS.gene06247:CDS
AACCAACTCTGGTTATTGGA+AGG	0.581092	3.1:-78725828	MS.gene06247:CDS
AAGACGAGCTCTTCGTCCGT+TGG	0.567604	3.1:+78726174	None:intergenic
AATTGAAGCAGGCAATTGAT+AGG	0.447214	3.1:+78726125	None:intergenic
AGAAACTACTGCTTGCAATC+AGG	0.467745	3.1:-78725657	MS.gene06247:intron
ATCACTAAGTAATGGAATCG+CGG	0.598075	3.1:-78725771	MS.gene06247:CDS
ATCTCAGGAATAATTGAAGC+AGG	0.517678	3.1:+78726114	None:intergenic
ATGAACAGAACAACCAACTC+TGG	0.580063	3.1:-78725839	MS.gene06247:CDS
ATGGAAACGAGATAGGGAAC+TGG	0.484070	3.1:-78725492	MS.gene06247:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTATGGAAACGAGATA+GGG	-	chr3.1:78725991-78726010	MS.gene06247:intron	30.0%
AAGCTGAACTTTGTCAAAAA+TGG	-	chr3.1:78725258-78725277	MS.gene06247:CDS	30.0%
ATCTAGAAAAATGAGCAGTA+GGG	+	chr3.1:78726166-78726185	None:intergenic	30.0%
ATGCCTTAACTGTTAAATGT+TGG	-	chr3.1:78725958-78725977	MS.gene06247:intron	30.0%
ATTAGTATTCATCACCGTAT+TGG	+	chr3.1:78726084-78726103	None:intergenic	30.0%
GTTTCTTCATCACTAAGTAA+TGG	-	chr3.1:78725710-78725729	MS.gene06247:CDS	30.0%
TATCAAGGAAAATCTCCAAT+TGG	-	chr3.1:78725764-78725783	MS.gene06247:CDS	30.0%
TGCCTTAACTGTTAAATGTT+GGG	-	chr3.1:78725959-78725978	MS.gene06247:intron	30.0%
TGTGTGTAATTAGGAAATTG+TGG	-	chr3.1:78725569-78725588	MS.gene06247:intron	30.0%
TTACATGATGAAGACCAATA+CGG	-	chr3.1:78726067-78726086	MS.gene06247:intron	30.0%

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	78725252	78726259	78725252	ID=MS.gene06247
chr3.1	mRNA	78725252	78726259	78725252	ID=MS.gene06247.t1;Parent=MS.gene06247
chr3.1	exon	78726079	78726259	78726079	ID=MS.gene06247.t1.exon1;Parent=MS.gene06247.t1
chr3.1	CDS	78726079	78726259	78726079	ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1
chr3.1	exon	78725658	78725929	78725658	ID=MS.gene06247.t1.exon2;Parent=MS.gene06247.t1
chr3.1	CDS	78725658	78725929	78725658	ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1
chr3.1	exon	78725252	78725524	78725252	ID=MS.gene06247.t1.exon3;Parent=MS.gene06247.t1
chr3.1	CDS	78725252	78725524	78725252	ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1

Gene Sequence

>MS.gene06247

ATGGAAAAGCTGAACTTTGTCAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGTACTTAGCAAACTAGGCTCAACACAATCATGTTACTTTTGTGCTCTATAATATAATGTGATAGATCATAGATGTTAATACAAAAATGATTTAATATATAGCCATATATAAATAATTTGGTTAAATATTTTATGTGTGTGTGTAATTAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAATTGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGGTAATTAATATTCCATTAATCATATATATAGTCCTTTTTACAACCAAAGTGACAATGACCGAATTGGAGTAGATCGTGGCAGCAAAGTCACTCTATCACTTATAATGCCTTAACTGTTAAATGTTGGGTGCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAATCGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA

Protein sequence

>MS.gene06247.t1

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPIGSRTHWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIEIGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF