AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06247

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06247.t1 MTR_3g098810 93.361 241 16 0 1 241 1 241 2.45e-147 410
MS.gene06247.t1 MTR_8g099750 69.417 206 50 3 1 206 1 193 8.85e-101 292
MS.gene06247.t1 MTR_3g098810 94.805 154 8 0 1 154 1 154 3.24e-99 286
MS.gene06247.t1 MTR_7g005280 62.011 179 56 5 1 178 1 168 1.23e-71 219
MS.gene06247.t1 MTR_7g085220 48.810 168 77 3 12 172 6 171 6.68e-52 172
MS.gene06247.t1 MTR_2g080010 49.711 173 75 4 14 176 15 185 3.64e-50 167
MS.gene06247.t1 MTR_3g088110 47.027 185 84 5 13 195 6 178 8.72e-50 164
MS.gene06247.t1 MTR_4g081870 49.693 163 74 3 12 172 7 163 1.11e-49 164
MS.gene06247.t1 MTR_5g041940 50.000 160 72 3 14 171 3 156 5.00e-49 162
MS.gene06247.t1 MTR_4g089135 46.667 180 75 3 13 173 14 191 1.07e-48 163
MS.gene06247.t1 MTR_8g094580 48.780 164 75 3 10 171 3 159 1.34e-48 161
MS.gene06247.t1 MTR_2g093810 50.877 171 71 5 14 182 14 173 2.58e-48 162
MS.gene06247.t1 MTR_2157s0010 44.565 184 89 4 14 185 8 190 7.93e-48 159
MS.gene06247.t1 MTR_7g100990 48.125 160 77 3 13 170 10 165 8.70e-48 160
MS.gene06247.t1 MTR_8g059170 48.171 164 73 4 14 174 14 168 1.26e-45 155
MS.gene06247.t1 MTR_2g079990 48.148 162 72 3 14 173 16 167 2.30e-45 155
MS.gene06247.t1 MTR_3g096920 46.341 164 78 3 10 171 3 158 4.68e-45 152
MS.gene06247.t1 MTR_2g068880 38.785 214 105 4 6 193 13 226 2.19e-43 149
MS.gene06247.t1 MTR_5g090970 47.170 159 79 3 16 170 20 177 1.11e-42 147
MS.gene06247.t1 MTR_5g090970 46.875 160 79 3 16 170 20 178 1.30e-42 147
MS.gene06247.t1 MTR_5g012080 45.882 170 73 5 9 171 2 159 1.56e-42 147
MS.gene06247.t1 MTR_4g101680 43.353 173 81 4 9 176 2 162 2.70e-42 147
MS.gene06247.t1 MTR_4g036030 45.833 168 74 5 9 171 2 157 4.24e-42 146
MS.gene06247.t1 MTR_8g076110 44.848 165 74 3 14 173 6 158 4.66e-42 145
MS.gene06247.t1 MTR_8g024480 44.186 172 82 4 9 171 10 176 9.85e-42 147
MS.gene06247.t1 MTR_3g064580 47.531 162 70 4 14 170 6 157 1.13e-41 150
MS.gene06247.t1 MTR_2g062730 43.529 170 80 5 10 174 6 164 1.74e-41 145
MS.gene06247.t1 MTR_4g108760 41.341 179 93 5 14 188 17 187 1.92e-41 145
MS.gene06247.t1 MTR_5g069030 44.379 169 80 3 11 175 22 180 2.25e-41 149
MS.gene06247.t1 MTR_5g076850 45.342 161 74 3 14 170 6 156 2.31e-41 149
MS.gene06247.t1 MTR_3g435150 44.444 162 80 4 14 173 16 169 3.25e-41 143
MS.gene06247.t1 MTR_2g068920 37.915 211 110 5 16 205 23 233 3.98e-41 142
MS.gene06247.t1 MTR_5g021710 46.386 166 72 4 14 174 8 161 4.71e-41 144
MS.gene06247.t1 MTR_6g084430 42.767 159 77 3 14 170 5 151 5.36e-41 143
MS.gene06247.t1 MTR_3g109340 43.210 162 81 3 14 173 22 174 6.14e-41 144
MS.gene06247.t1 MTR_8g467490 42.135 178 92 4 8 176 4 179 7.50e-41 144
MS.gene06247.t1 MTR_3g109340 43.210 162 80 3 14 173 22 173 8.34e-41 143
MS.gene06247.t1 MTR_6g011860 41.808 177 95 3 2 173 3 176 9.83e-41 144
MS.gene06247.t1 MTR_5g014300 43.452 168 79 4 10 170 2 160 1.22e-40 142
MS.gene06247.t1 MTR_3g093050 43.275 171 83 3 11 177 19 179 1.37e-40 147
MS.gene06247.t1 MTR_3g093050 43.275 171 83 3 11 177 19 179 2.37e-40 146
MS.gene06247.t1 MTR_3g096920 39.000 200 77 4 10 171 3 195 2.51e-40 141
MS.gene06247.t1 MTR_5g040420 39.896 193 101 4 16 195 16 206 2.64e-40 142
MS.gene06247.t1 MTR_2g079990 41.848 184 79 3 14 173 16 195 5.27e-40 142
MS.gene06247.t1 MTR_1g096430 43.023 172 79 4 14 179 7 165 9.62e-40 140
MS.gene06247.t1 MTR_3g070030 44.311 167 84 3 7 171 12 171 1.00e-39 140
MS.gene06247.t1 MTR_6g477900 37.688 199 101 4 14 199 6 194 1.06e-39 137
MS.gene06247.t1 MTR_3g093040 41.667 168 84 3 14 177 108 265 1.22e-39 139
MS.gene06247.t1 MTR_1g008740 38.806 201 98 6 14 202 27 214 1.40e-39 140
MS.gene06247.t1 MTR_1g008740 38.806 201 98 6 14 202 13 200 1.60e-39 139
MS.gene06247.t1 MTR_6g012670 43.558 163 76 4 13 170 19 170 2.47e-39 138
MS.gene06247.t1 MTR_4g035590 44.172 163 73 4 14 171 8 157 3.92e-39 139
MS.gene06247.t1 MTR_4g098630 44.720 161 78 4 14 170 6 159 7.84e-39 137
MS.gene06247.t1 MTR_7g085260 40.223 179 96 5 14 186 17 190 1.78e-38 137
MS.gene06247.t1 MTR_2g078700 42.236 161 85 4 12 170 21 175 2.25e-38 137
MS.gene06247.t1 MTR_2g064090 42.857 161 79 3 14 170 6 157 6.95e-38 135
MS.gene06247.t1 MTR_3g096140 41.875 160 79 3 16 171 9 158 1.12e-37 133
MS.gene06247.t1 MTR_1g069805 42.073 164 81 4 12 173 8 159 4.90e-37 131
MS.gene06247.t1 MTR_3g096140 41.875 160 79 3 16 171 9 158 7.81e-37 133
MS.gene06247.t1 MTR_6g032770 40.964 166 88 5 14 177 18 175 1.27e-36 132
MS.gene06247.t1 MTR_4g134460 42.945 163 78 4 16 176 56 205 1.48e-36 134
MS.gene06247.t1 MTR_3g116070 45.714 140 71 3 14 150 23 160 4.04e-35 128
MS.gene06247.t1 MTR_2g064470 39.877 163 85 5 12 172 9 160 4.14e-35 127
MS.gene06247.t1 MTR_4g075980 44.755 143 74 3 1 141 4 143 6.24e-35 126
MS.gene06247.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 7.30e-35 127
MS.gene06247.t1 MTR_7g097090 42.767 159 77 4 12 168 8 154 8.25e-35 126
MS.gene06247.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 1.16e-34 129
MS.gene06247.t1 MTR_1g097300 42.138 159 78 3 16 170 21 169 2.22e-34 129
MS.gene06247.t1 MTR_7g011120 38.235 170 96 3 7 171 1 166 2.27e-34 125
MS.gene06247.t1 MTR_8g093580 39.157 166 87 3 10 171 2 157 3.55e-34 128
MS.gene06247.t1 MTR_8g063550 39.157 166 87 3 10 171 2 157 3.90e-34 127
MS.gene06247.t1 MTR_7g011130 37.640 178 92 4 7 171 12 183 4.51e-34 125
MS.gene06247.t1 MTR_8g023860 39.877 163 79 5 11 168 9 157 1.05e-33 125
MS.gene06247.t1 MTR_1g090720 43.478 161 83 2 14 170 42 198 4.10e-33 125
MS.gene06247.t1 MTR_1g090723 41.566 166 75 7 16 173 10 161 4.18e-33 126
MS.gene06247.t1 MTR_8g023840 41.509 159 74 6 14 167 11 155 4.31e-33 124
MS.gene06247.t1 MTR_1g090723 41.566 166 75 7 16 173 10 161 4.80e-33 126
MS.gene06247.t1 MTR_1g090723 41.566 166 76 7 16 173 10 162 1.01e-32 125
MS.gene06247.t1 MTR_3g070040 42.857 154 81 4 18 171 12 158 1.81e-32 120
MS.gene06247.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 5.68e-32 123
MS.gene06247.t1 MTR_2g086880 42.105 133 70 2 10 139 14 142 5.99e-32 122
MS.gene06247.t1 MTR_0036s0150 39.053 169 85 5 16 178 7 163 5.90e-31 119
MS.gene06247.t1 MTR_4g094302 35.185 162 95 3 14 174 11 163 1.48e-30 112
MS.gene06247.t1 MTR_8g023930 37.500 168 86 5 14 176 24 177 1.64e-30 118
MS.gene06247.t1 MTR_8g094580 48.148 108 49 2 64 171 5 105 2.44e-30 112
MS.gene06247.t1 MTR_3g096140 38.776 147 76 3 29 171 1 137 2.67e-29 112
MS.gene06247.t1 MTR_8g023900 37.576 165 84 5 17 176 196 346 5.61e-29 114
MS.gene06247.t1 MTR_8g023900 33.951 162 90 6 14 170 12 161 6.21e-23 97.1
MS.gene06247.t1 MTR_2g086690 38.889 162 85 4 15 168 5 160 3.17e-28 107
MS.gene06247.t1 MTR_4g052620 39.759 166 81 6 14 169 5 161 3.29e-28 108
MS.gene06247.t1 MTR_4g094302 41.085 129 66 3 14 141 11 130 1.76e-27 103
MS.gene06247.t1 MTR_7g070140 58.228 79 31 1 65 143 17 93 1.07e-24 95.5
MS.gene06247.t1 MTR_8g093790 35.185 162 73 7 13 172 9 140 4.67e-24 95.1
MS.gene06247.t1 MTR_7g105170 33.136 169 97 6 14 172 4 166 6.31e-24 96.7
MS.gene06247.t1 MTR_8g023880 30.899 178 86 7 12 170 5 164 7.11e-21 89.0
MS.gene06247.t1 MTR_3g096400 31.902 163 95 6 13 168 6 159 4.51e-19 82.8
MS.gene06247.t1 MTR_7g070150 43.333 90 33 3 112 201 8 79 5.26e-17 73.9
MS.gene06247.t1 MTR_7g116460 30.688 189 101 10 20 198 11 179 1.38e-13 67.8
MS.gene06247.t1 MTR_7g083330 29.771 131 82 4 13 139 17 141 3.81e-12 63.5
MS.gene06247.t1 MTR_7g083360 29.197 137 87 4 7 139 3 133 2.03e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06247.t1 AT5G13180 51.101 227 70 5 1 203 1 210 1.04e-67 209
MS.gene06247.t1 AT2G33480 57.143 175 63 5 1 174 1 164 3.27e-63 198
MS.gene06247.t1 AT2G33480 56.000 175 63 4 1 174 1 162 7.84e-63 197
MS.gene06247.t1 AT3G04070 49.432 176 77 4 8 175 4 175 6.43e-54 177
MS.gene06247.t1 AT1G01720 39.381 226 124 5 13 236 6 220 6.36e-51 167
MS.gene06247.t1 AT3G04070 45.745 188 82 4 8 175 4 191 2.31e-50 168
MS.gene06247.t1 AT1G61110 49.153 177 69 4 10 173 12 180 3.88e-49 164
MS.gene06247.t1 AT1G77450 45.503 189 86 5 6 185 1 181 4.36e-49 162
MS.gene06247.t1 AT1G69490 48.765 162 75 3 12 171 7 162 9.33e-49 161
MS.gene06247.t1 AT3G15510 47.305 167 79 3 18 177 21 185 6.90e-47 159
MS.gene06247.t1 AT4G17980 46.061 165 79 3 10 170 2 160 4.55e-46 154
MS.gene06247.t1 AT4G27410 46.541 159 73 3 14 170 14 162 5.32e-46 155
MS.gene06247.t1 AT5G08790 48.750 160 74 3 14 171 7 160 5.76e-46 155
MS.gene06247.t1 AT5G39610 45.930 172 79 5 14 181 20 181 1.00e-45 154
MS.gene06247.t1 AT4G17980 46.061 165 79 3 10 170 2 160 1.22e-45 154
MS.gene06247.t1 AT5G46590 45.000 180 79 4 10 185 2 165 3.19e-45 153
MS.gene06247.t1 AT1G52890 47.531 162 73 3 14 173 14 165 5.46e-45 153
MS.gene06247.t1 AT3G15500 44.199 181 85 4 14 192 14 180 1.64e-44 152
MS.gene06247.t1 AT1G52880 48.750 160 78 2 18 173 21 180 3.72e-44 151
MS.gene06247.t1 AT5G63790 46.875 160 77 3 14 171 50 203 7.54e-44 150
MS.gene06247.t1 AT5G63790 46.875 160 77 3 14 171 60 213 1.08e-43 150
MS.gene06247.t1 AT1G12260 44.767 172 78 4 9 175 2 161 1.40e-43 150
MS.gene06247.t1 AT4G27410 43.182 176 71 4 14 170 14 179 1.67e-43 149
MS.gene06247.t1 AT5G46590 48.052 154 71 3 10 159 2 150 2.18e-43 148
MS.gene06247.t1 AT5G39820 44.767 172 76 4 16 170 22 191 2.24e-43 149
MS.gene06247.t1 AT1G33060 46.584 161 72 3 14 170 24 174 4.17e-43 154
MS.gene06247.t1 AT5G07680 44.578 166 82 4 14 177 3 160 4.38e-43 148
MS.gene06247.t1 AT1G12260 44.767 172 78 4 9 175 2 161 4.84e-43 150
MS.gene06247.t1 AT5G07680 44.578 166 82 4 14 177 17 174 4.91e-43 148
MS.gene06247.t1 AT1G33060 46.584 161 72 3 14 170 24 174 5.21e-43 154
MS.gene06247.t1 AT5G61430 44.578 166 82 4 14 177 16 173 6.41e-43 148
MS.gene06247.t1 AT1G65910 46.584 161 72 3 14 170 6 156 1.38e-42 152
MS.gene06247.t1 AT1G62700 45.833 168 74 4 9 171 2 157 2.43e-42 148
MS.gene06247.t1 AT1G62700 45.833 168 74 4 9 171 2 157 2.43e-42 148
MS.gene06247.t1 AT5G66300 40.000 225 112 8 14 231 12 220 9.58e-42 144
MS.gene06247.t1 AT4G35580 44.643 168 75 4 14 175 9 164 1.01e-41 149
MS.gene06247.t1 AT4G35580 44.643 168 75 4 14 175 9 164 1.08e-41 149
MS.gene06247.t1 AT4G35580 46.012 163 70 4 14 170 9 159 1.14e-41 149
MS.gene06247.t1 AT3G04060 42.286 175 80 4 11 177 17 178 1.32e-41 145
MS.gene06247.t1 AT5G62380 41.765 170 82 3 11 175 4 161 1.37e-41 145
MS.gene06247.t1 AT5G62380 41.765 170 82 3 11 175 4 161 1.37e-41 145
MS.gene06247.t1 AT1G79580 45.509 167 74 5 10 171 13 167 1.47e-41 145
MS.gene06247.t1 AT1G79580 45.509 167 74 5 10 171 13 167 1.47e-41 145
MS.gene06247.t1 AT1G79580 45.509 167 74 5 10 171 13 167 1.47e-41 145
MS.gene06247.t1 AT1G79580 45.509 167 74 5 10 171 13 167 1.47e-41 145
MS.gene06247.t1 AT1G79580 45.509 167 74 5 10 171 13 167 1.47e-41 145
MS.gene06247.t1 AT3G10490 45.062 162 74 4 14 170 27 178 1.56e-41 142
MS.gene06247.t1 AT3G10480 45.342 161 74 3 14 170 27 177 1.71e-41 147
MS.gene06247.t1 AT4G36160 46.012 163 71 4 14 171 10 160 2.09e-41 145
MS.gene06247.t1 AT4G36160 46.012 163 71 4 14 171 10 160 2.09e-41 145
MS.gene06247.t1 AT4G36160 46.012 163 71 4 14 171 14 164 2.24e-41 145
MS.gene06247.t1 AT2G46770 43.182 176 82 5 9 171 11 181 2.40e-41 145
MS.gene06247.t1 AT3G03200 45.963 161 74 5 14 170 6 157 6.16e-41 146
MS.gene06247.t1 AT1G33280 44.172 163 73 3 14 171 8 157 8.85e-41 142
MS.gene06247.t1 AT2G18060 45.399 163 72 4 14 171 9 159 1.11e-40 143
MS.gene06247.t1 AT2G18060 45.399 163 72 4 14 171 9 159 1.11e-40 143
MS.gene06247.t1 AT5G17260 45.679 162 73 4 14 170 6 157 1.13e-40 145
MS.gene06247.t1 AT1G32510 44.186 172 84 3 12 176 4 170 1.15e-40 141
MS.gene06247.t1 AT1G32770 42.222 180 87 5 3 171 5 178 1.15e-40 143
MS.gene06247.t1 AT3G10480 45.679 162 73 4 14 170 27 178 1.37e-40 144
MS.gene06247.t1 AT4G10350 43.558 163 77 3 14 171 9 161 2.06e-40 142
MS.gene06247.t1 AT3G61910 41.111 180 88 5 4 170 1 175 2.67e-40 141
MS.gene06247.t1 AT3G10490 45.062 162 74 4 14 170 27 178 4.90e-40 143
MS.gene06247.t1 AT3G18400 44.025 159 76 4 14 170 5 152 6.05e-40 140
MS.gene06247.t1 AT1G71930 43.678 174 80 5 12 179 7 168 7.99e-40 140
MS.gene06247.t1 AT1G71930 43.678 174 80 5 12 179 7 168 7.99e-40 140
MS.gene06247.t1 AT3G17730 44.099 161 76 4 14 170 6 156 1.20e-39 137
MS.gene06247.t1 AT2G24430 41.358 162 84 3 14 173 16 168 1.60e-39 139
MS.gene06247.t1 AT2G24430 41.358 162 84 3 14 173 16 168 1.60e-39 139
MS.gene06247.t1 AT1G76420 41.520 171 85 4 14 180 22 181 1.86e-39 139
MS.gene06247.t1 AT3G29035 49.231 130 60 2 14 141 24 149 1.92e-39 139
MS.gene06247.t1 AT1G26870 45.062 162 82 3 14 170 16 175 2.79e-39 140
MS.gene06247.t1 AT2G43000 47.134 157 72 5 16 170 20 167 3.80e-39 137
MS.gene06247.t1 AT5G18270 42.012 169 89 4 4 170 11 172 9.51e-39 137
MS.gene06247.t1 AT5G18270 42.012 169 89 4 4 170 11 172 1.10e-38 137
MS.gene06247.t1 AT5G24590 35.652 230 133 5 11 235 10 229 2.21e-38 139
MS.gene06247.t1 AT1G54330 40.476 168 80 4 14 177 6 157 8.05e-38 134
MS.gene06247.t1 AT5G53950 42.767 159 83 4 14 170 17 169 9.46e-38 135
MS.gene06247.t1 AT2G17040 41.875 160 79 4 16 173 8 155 2.39e-37 132
MS.gene06247.t1 AT3G12977 37.714 175 96 4 12 183 16 180 2.79e-37 132
MS.gene06247.t1 AT2G02450 42.945 163 78 5 16 176 53 202 3.86e-37 134
MS.gene06247.t1 AT2G02450 42.945 163 78 5 16 176 53 202 6.62e-37 134
MS.gene06247.t1 AT3G10500 42.442 172 81 4 8 173 3 162 1.12e-36 135
MS.gene06247.t1 AT3G15170 38.323 167 83 4 12 170 18 172 1.71e-36 131
MS.gene06247.t1 AT1G56010 38.690 168 91 5 12 175 17 176 6.75e-36 129
MS.gene06247.t1 AT3G10480 38.974 195 71 5 14 170 27 211 1.29e-35 132
MS.gene06247.t1 AT3G49530 38.889 162 86 3 14 171 13 165 2.66e-35 130
MS.gene06247.t1 AT3G12910 42.073 164 85 4 16 170 23 185 2.72e-35 127
MS.gene06247.t1 AT3G49530 38.889 162 86 3 14 171 13 165 7.47e-35 129
MS.gene06247.t1 AT1G34190 41.509 159 79 3 16 170 18 166 1.54e-34 130
MS.gene06247.t1 AT5G04410 39.521 167 87 3 8 170 3 159 3.92e-34 129
MS.gene06247.t1 AT1G34180 40.252 159 81 3 16 170 18 166 1.12e-32 123
MS.gene06247.t1 AT2G33480 51.724 116 45 4 59 174 3 107 1.96e-32 117
MS.gene06247.t1 AT1G34180 43.056 144 74 2 16 155 18 157 3.20e-32 123
MS.gene06247.t1 AT5G09330 41.212 165 83 3 10 170 2 156 3.63e-32 122
MS.gene06247.t1 AT5G09330 41.212 165 83 3 10 170 2 156 3.63e-32 122
MS.gene06247.t1 AT5G09330 41.212 165 83 3 10 170 2 156 3.63e-32 122
MS.gene06247.t1 AT5G09330 41.212 165 83 3 10 170 2 156 3.63e-32 122
MS.gene06247.t1 AT5G09330 41.212 165 83 3 10 170 2 156 3.63e-32 122
MS.gene06247.t1 AT4G28530 39.674 184 81 6 7 172 3 174 1.06e-31 119
MS.gene06247.t1 AT1G34180 38.012 171 80 3 16 170 18 178 1.20e-31 120
MS.gene06247.t1 AT1G34180 40.385 156 73 2 16 155 18 169 2.67e-31 121
MS.gene06247.t1 AT5G64060 38.182 165 88 3 10 170 2 156 4.01e-31 117
MS.gene06247.t1 AT3G44290 36.301 146 86 2 7 149 7 148 8.34e-30 111
MS.gene06247.t1 AT5G50820 36.364 176 101 5 5 177 7 174 2.25e-29 109
MS.gene06247.t1 AT2G27300 40.602 133 72 2 10 139 10 138 2.28e-29 112
MS.gene06247.t1 AT3G44290 28.968 252 140 6 7 240 7 237 2.61e-29 112
MS.gene06247.t1 AT5G04395 38.889 144 72 2 14 142 28 170 6.43e-29 108
MS.gene06247.t1 AT5G22290 39.370 127 70 2 16 139 23 145 2.06e-28 110
MS.gene06247.t1 AT5G64530 35.465 172 89 5 14 176 3 161 3.87e-26 100
MS.gene06247.t1 AT4G01550 40.881 159 77 5 17 170 7 153 4.46e-26 105
MS.gene06247.t1 AT4G01520 43.796 137 68 5 15 144 5 139 4.88e-26 103
MS.gene06247.t1 AT4G01540 43.704 135 67 5 17 144 7 139 1.43e-25 103
MS.gene06247.t1 AT4G01540 43.704 135 67 5 17 144 7 139 1.75e-25 103
MS.gene06247.t1 AT4G01540 43.704 135 67 5 17 144 7 139 2.14e-25 103
MS.gene06247.t1 AT5G64530 41.860 129 61 4 14 141 3 118 2.35e-25 97.8
MS.gene06247.t1 AT4G01540 43.704 135 67 5 17 144 7 139 2.90e-25 103
MS.gene06247.t1 AT1G32870 39.548 177 89 6 7 178 5 168 3.15e-25 103
MS.gene06247.t1 AT1G32870 39.548 177 89 6 7 178 5 168 3.62e-25 103
MS.gene06247.t1 AT1G32870 39.548 177 89 6 7 178 41 204 4.29e-25 103
MS.gene06247.t1 AT5G61430 43.860 114 56 3 64 177 5 110 1.19e-24 99.0
MS.gene06247.t1 AT3G12977 41.379 116 57 3 63 177 16 121 3.96e-24 96.7
MS.gene06247.t1 AT4G10350 43.243 111 53 2 61 171 14 114 9.14e-24 97.1
MS.gene06247.t1 AT5G14000 31.765 170 101 3 7 174 8 164 1.65e-23 94.4
MS.gene06247.t1 AT3G44350 35.758 165 91 5 17 174 8 164 1.74e-23 95.1
MS.gene06247.t1 AT1G02230 39.456 147 76 5 15 155 4 143 1.77e-23 97.4
MS.gene06247.t1 AT5G14000 34.247 146 90 2 7 150 8 149 3.92e-23 92.0
MS.gene06247.t1 AT1G56010 40.708 113 58 3 64 175 5 109 3.95e-23 94.7
MS.gene06247.t1 AT5G22380 32.990 194 111 6 17 198 8 194 5.51e-23 94.0
MS.gene06247.t1 AT3G44350 36.486 148 82 4 17 157 8 150 2.51e-22 90.1
MS.gene06247.t1 AT3G10490 47.727 88 35 3 84 170 1 78 1.14e-19 86.7
MS.gene06247.t1 AT3G10490 47.727 88 35 3 84 170 1 78 1.14e-19 86.7
MS.gene06247.t1 AT1G02250 34.591 159 84 6 15 167 4 148 9.82e-19 84.3
MS.gene06247.t1 AT2G43000 48.936 94 39 4 77 170 5 89 3.89e-18 80.1
MS.gene06247.t1 AT1G01010 38.346 133 70 4 17 139 6 136 5.63e-18 82.8
MS.gene06247.t1 AT3G04420 37.681 138 70 5 15 143 4 134 1.09e-17 80.5
MS.gene06247.t1 AT3G04420 37.681 138 70 5 15 143 4 134 1.48e-17 80.9
MS.gene06247.t1 AT4G28530 41.228 114 49 3 7 102 3 116 2.81e-16 77.0
MS.gene06247.t1 AT2G18060 43.902 82 34 2 90 171 2 71 2.67e-15 73.6
MS.gene06247.t1 AT3G56530 32.716 162 88 6 14 168 52 199 5.40e-15 73.6
MS.gene06247.t1 AT1G02220 34.839 155 79 6 15 156 4 149 3.05e-14 71.6
MS.gene06247.t1 AT5G50820 31.034 116 74 2 64 177 14 125 6.49e-11 59.3
MS.gene06247.t1 AT3G04430 29.851 134 78 4 20 140 6 136 8.87e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGTGCTGTTTCGATACT+TGG 0.265925 3.1:+78725862 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3.1:-78725832 MS.gene06247:CDS
CAAAACTATGGAAACGAGAT+AGG 0.347341 3.1:-78725499 MS.gene06247:CDS
AAAAGAAGTAATATAGAAAT+CGG 0.379573 3.1:-78725445 MS.gene06247:CDS
CTCATAAAATCAAAGAATCT+TGG 0.393607 3.1:+78725370 None:intergenic
TATCAAGGAAAATCTCCAAT+TGG 0.420986 3.1:-78725725 MS.gene06247:CDS
ATTAGTATTCATCACCGTAT+TGG 0.436278 3.1:+78725408 None:intergenic
AATTGAAGCAGGCAATTGAT+AGG 0.447214 3.1:+78726125 None:intergenic
CAATGAGTTCGAGATCCAAT+TGG 0.465475 3.1:+78725710 None:intergenic
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3.1:-78725821 MS.gene06247:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3.1:-78725657 MS.gene06247:intron
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3.1:+78725669 None:intergenic
ATGGAAACGAGATAGGGAAC+TGG 0.484070 3.1:-78725492 MS.gene06247:CDS
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3.1:+78726071 None:intergenic
CAATTGGATCTCGAACTCAT+TGG 0.497017 3.1:-78725709 MS.gene06247:CDS
GTTTCTTCATCACTAAGTAA+TGG 0.512585 3.1:-78725779 MS.gene06247:CDS
ATCTCAGGAATAATTGAAGC+AGG 0.517678 3.1:+78726114 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3.1:+78725826 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3.1:+78726099 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.532891 3.1:-78725770 MS.gene06247:CDS
TATGATCCCTGGGATTTGCC+AGG 0.534942 3.1:-78726078 MS.gene06247:intron
TGGGTGCAGATGCAAAACTA+TGG 0.562905 3.1:-78725511 MS.gene06247:intron
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3.1:-78726089 MS.gene06247:CDS
AAGACGAGCTCTTCGTCCGT+TGG 0.567604 3.1:+78726174 None:intergenic
GGTGTAAGCAGATTGCCTCC+TGG 0.568317 3.1:-78726210 MS.gene06247:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3.1:-78725888 MS.gene06247:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3.1:-78725839 MS.gene06247:CDS
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3.1:-78726088 MS.gene06247:CDS
AACCAACTCTGGTTATTGGA+AGG 0.581092 3.1:-78725828 MS.gene06247:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3.1:-78725350 MS.gene06247:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3.1:-78725771 MS.gene06247:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3.1:-78725299 MS.gene06247:CDS
AAAACTATGGAAACGAGATA+GGG 0.606762 3.1:-78725498 MS.gene06247:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3.1:-78725401 MS.gene06247:CDS
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3.1:+78726072 None:intergenic
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3.1:-78725920 MS.gene06247:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3.1:-78725422 MS.gene06247:CDS
TGGAAACGAGATAGGGAACT+GGG 0.648812 3.1:-78725491 MS.gene06247:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3.1:-78725274 MS.gene06247:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCAAATTATTTATATA+TGG + chr3.1:78725537-78725556 None:intergenic 10.0%
!! AAAAGAAGTAATATAGAAAT+CGG - chr3.1:78726044-78726063 MS.gene06247:intron 15.0%
!! ATAGCCATATATAAATAATT+TGG - chr3.1:78725530-78725549 MS.gene06247:intron 15.0%
!! AGGACTATATATATGATTAA+TGG + chr3.1:78725869-78725888 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG - chr3.1:78725749-78725768 MS.gene06247:CDS 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG - chr3.1:78726121-78726140 MS.gene06247:CDS 20.0%
! CTCATAAAATCAAAGAATCT+TGG + chr3.1:78726122-78726141 None:intergenic 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG - chr3.1:78725560-78725579 MS.gene06247:intron 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG - chr3.1:78726120-78726139 MS.gene06247:CDS 25.0%
AAAACTATGGAAACGAGATA+GGG - chr3.1:78725991-78726010 MS.gene06247:intron 30.0%
AAGCTGAACTTTGTCAAAAA+TGG - chr3.1:78725258-78725277 MS.gene06247:CDS 30.0%
ATCTAGAAAAATGAGCAGTA+GGG + chr3.1:78726166-78726185 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG - chr3.1:78725958-78725977 MS.gene06247:intron 30.0%
ATTAGTATTCATCACCGTAT+TGG + chr3.1:78726084-78726103 None:intergenic 30.0%
GTTTCTTCATCACTAAGTAA+TGG - chr3.1:78725710-78725729 MS.gene06247:CDS 30.0%
TATCAAGGAAAATCTCCAAT+TGG - chr3.1:78725764-78725783 MS.gene06247:CDS 30.0%
TGCCTTAACTGTTAAATGTT+GGG - chr3.1:78725959-78725978 MS.gene06247:intron 30.0%
TGTGTGTAATTAGGAAATTG+TGG - chr3.1:78725569-78725588 MS.gene06247:intron 30.0%
TTACATGATGAAGACCAATA+CGG - chr3.1:78726067-78726086 MS.gene06247:intron 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG + chr3.1:78725889-78725908 None:intergenic 30.0%
AATTGAAGCAGGCAATTGAT+AGG + chr3.1:78725367-78725386 None:intergenic 35.0%
ATCTCAGGAATAATTGAAGC+AGG + chr3.1:78725378-78725397 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG - chr3.1:78725990-78726009 MS.gene06247:intron 35.0%
CACCCAACATTTAACAGTTA+AGG + chr3.1:78725964-78725983 None:intergenic 35.0%
CAGTAGTTTCTAAGCTAACT+AGG + chr3.1:78725823-78725842 None:intergenic 35.0%
GATCTAGAAAAATGAGCAGT+AGG + chr3.1:78726167-78726186 None:intergenic 35.0%
GGTGATGAATACTAATGTTG+AGG - chr3.1:78726088-78726107 MS.gene06247:CDS 35.0%
TAAGTATTTCTTCAGCAGCA+AGG - chr3.1:78725601-78725620 MS.gene06247:intron 35.0%
TCTTCATCAGAAGAAAGATG+CGG - chr3.1:78726215-78726234 MS.gene06247:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG - chr3.1:78725718-78725737 MS.gene06247:CDS 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG - chr3.1:78725299-78725318 MS.gene06247:CDS 35.0%
AACCAACTCTGGTTATTGGA+AGG - chr3.1:78725661-78725680 MS.gene06247:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG - chr3.1:78725832-78725851 MS.gene06247:CDS 40.0%
ATGAACAGAACAACCAACTC+TGG - chr3.1:78725650-78725669 MS.gene06247:intron 40.0%
CAAAGTGACAATGACCGAAT+TGG - chr3.1:78725898-78725917 MS.gene06247:CDS 40.0%
CAATGAGTTCGAGATCCAAT+TGG + chr3.1:78725782-78725801 None:intergenic 40.0%
CAATTGGATCTCGAACTCAT+TGG - chr3.1:78725780-78725799 MS.gene06247:CDS 40.0%
GAACAACCAACTCTGGTTAT+TGG - chr3.1:78725657-78725676 MS.gene06247:intron 40.0%
GTTGGCTGAAAACAAAAACC+AGG + chr3.1:78725300-78725319 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG + chr3.1:78725393-78725412 None:intergenic 40.0%
! CAATTCGGTCATTGTCACTT+TGG + chr3.1:78725900-78725919 None:intergenic 40.0%
! TCACTAAGTAATGGAATCGC+GGG - chr3.1:78725719-78725738 MS.gene06247:CDS 40.0%
ATGGAAACGAGATAGGGAAC+TGG - chr3.1:78725997-78726016 MS.gene06247:intron 45.0%
ATGTCTGCAAGTATGATCCC+TGG - chr3.1:78725400-78725419 MS.gene06247:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG + chr3.1:78726161-78726180 None:intergenic 45.0%
GGCTGAAAACAAAAACCAGG+AGG + chr3.1:78725297-78725316 None:intergenic 45.0%
TAAGTACCTGGCAAATCCCA+GGG + chr3.1:78725420-78725439 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG - chr3.1:78725668-78725687 MS.gene06247:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG + chr3.1:78725915-78725934 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG - chr3.1:78725427-78725446 MS.gene06247:CDS 45.0%
TGCCTTCCAATAACCAGAGT+TGG + chr3.1:78725666-78725685 None:intergenic 45.0%
TGGAAACGAGATAGGGAACT+GGG - chr3.1:78725998-78726017 MS.gene06247:intron 45.0%
TGGGTGCAGATGCAAAACTA+TGG - chr3.1:78725978-78725997 MS.gene06247:intron 45.0%
TGTCTGCAAGTATGATCCCT+GGG - chr3.1:78725401-78725420 MS.gene06247:CDS 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG - chr3.1:78726190-78726209 MS.gene06247:CDS 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG + chr3.1:78725432-78725451 None:intergenic 45.0%
CTAAGTACCTGGCAAATCCC+AGG + chr3.1:78725421-78725440 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG - chr3.1:78725910-78725929 MS.gene06247:CDS 50.0%
TATGATCCCTGGGATTTGCC+AGG - chr3.1:78725411-78725430 MS.gene06247:CDS 50.0%
!! GCGAGTGCTGTTTCGATACT+TGG + chr3.1:78725630-78725649 None:intergenic 50.0%
AAGACGAGCTCTTCGTCCGT+TGG + chr3.1:78725318-78725337 None:intergenic 55.0%
GGTGTAAGCAGATTGCCTCC+TGG - chr3.1:78725279-78725298 MS.gene06247:CDS 55.0%
! GAGGGTACACAACTCAGCTC+CGG - chr3.1:78726139-78726158 MS.gene06247:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 78725252 78726259 78725252 ID=MS.gene06247
chr3.1 mRNA 78725252 78726259 78725252 ID=MS.gene06247.t1;Parent=MS.gene06247
chr3.1 exon 78726079 78726259 78726079 ID=MS.gene06247.t1.exon1;Parent=MS.gene06247.t1
chr3.1 CDS 78726079 78726259 78726079 ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1
chr3.1 exon 78725658 78725929 78725658 ID=MS.gene06247.t1.exon2;Parent=MS.gene06247.t1
chr3.1 CDS 78725658 78725929 78725658 ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1
chr3.1 exon 78725252 78725524 78725252 ID=MS.gene06247.t1.exon3;Parent=MS.gene06247.t1
chr3.1 CDS 78725252 78725524 78725252 ID=cds.MS.gene06247.t1;Parent=MS.gene06247.t1
Gene Sequence

>MS.gene06247

ATGGAAAAGCTGAACTTTGTCAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGCTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGTACTTAGCAAACTAGGCTCAACACAATCATGTTACTTTTGTGCTCTATAATATAATGTGATAGATCATAGATGTTAATACAAAAATGATTTAATATATAGCCATATATAAATAATTTGGTTAAATATTTTATGTGTGTGTGTAATTAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAATTGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGGTAATTAATATTCCATTAATCATATATATAGTCCTTTTTACAACCAAAGTGACAATGACCGAATTGGAGTAGATCGTGGCAGCAAAGTCACTCTATCACTTATAATGCCTTAACTGTTAAATGTTGGGTGCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAATCGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>MS.gene06247.t1

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPIGSRTHWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIEIGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF