AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05573

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05573.t1 MTR_3g463370 76.071 280 27 2 1 279 1 241 1.36e-145 408
MS.gene05573.t1 MTR_8g023510 71.429 266 66 4 1 263 3 261 2.37e-126 361
MS.gene05573.t1 MTR_4g023810 57.261 241 93 3 22 262 25 255 1.85e-92 274
MS.gene05573.t1 MTR_8g068040 38.491 265 138 7 9 261 10 261 9.75e-51 167
MS.gene05573.t1 MTR_5g031100 39.630 270 133 8 17 261 14 278 2.75e-50 167
MS.gene05573.t1 MTR_5g031120 40.221 271 131 8 17 261 14 279 4.68e-50 166
MS.gene05573.t1 MTR_8g068030 37.956 274 131 9 9 261 10 265 6.72e-50 166
MS.gene05573.t1 MTR_5g031140 39.209 278 140 9 7 261 15 286 5.75e-49 164
MS.gene05573.t1 MTR_5g031160 39.921 253 134 8 22 261 40 287 8.41e-49 163
MS.gene05573.t1 MTR_3g054170 41.667 264 141 5 1 261 1 254 4.06e-48 160
MS.gene05573.t1 MTR_8g068050 40.299 268 138 8 10 264 18 276 1.04e-45 163
MS.gene05573.t1 MTR_3g027280 41.085 258 127 9 12 257 18 262 1.09e-45 155
MS.gene05573.t1 MTR_3g054180 41.948 267 138 6 1 261 5 260 3.00e-45 153
MS.gene05573.t1 MTR_5g031090 37.698 252 133 9 27 261 31 275 4.06e-43 148
MS.gene05573.t1 MTR_3g047140 40.076 262 140 8 6 261 11 261 4.83e-43 148
MS.gene05573.t1 MTR_8g067980 41.700 247 117 12 31 262 26 260 1.18e-40 141
MS.gene05573.t1 MTR_1g090973 36.861 274 157 7 6 274 11 273 1.55e-40 142
MS.gene05573.t1 MTR_0684s0020 37.313 268 154 6 7 271 13 269 1.66e-40 142
MS.gene05573.t1 MTR_0163s0020 37.313 268 154 6 7 271 14 270 1.94e-40 141
MS.gene05573.t1 MTR_5g031030 36.800 250 134 8 27 261 34 274 9.29e-40 139
MS.gene05573.t1 MTR_8g067940 36.803 269 150 9 11 261 15 281 9.35e-39 137
MS.gene05573.t1 MTR_1g090957 38.610 259 120 10 12 257 18 250 1.88e-38 136
MS.gene05573.t1 MTR_3g054200 37.121 264 153 5 1 261 1 254 9.09e-36 129
MS.gene05573.t1 MTR_8g067930 37.209 258 141 7 16 261 11 259 1.39e-35 135
MS.gene05573.t1 MTR_8g067690 36.437 247 139 7 32 268 63 301 3.36e-35 134
MS.gene05573.t1 MTR_8g067990 39.095 243 123 11 31 259 26 257 1.14e-34 126
MS.gene05573.t1 MTR_8g067720 32.103 271 160 7 1 261 1 257 1.49e-34 132
MS.gene05573.t1 MTR_4g093080 35.798 257 143 10 16 261 14 259 2.25e-34 132
MS.gene05573.t1 MTR_8g067630 39.545 220 116 6 32 242 33 244 2.70e-34 130
MS.gene05573.t1 MTR_1g090943 35.531 273 159 9 9 276 15 275 1.01e-33 124
MS.gene05573.t1 MTR_8g067960 37.131 237 126 9 37 261 16 241 4.42e-33 121
MS.gene05573.t1 MTR_1g090930 38.583 254 126 9 16 256 22 258 8.74e-33 122
MS.gene05573.t1 MTR_4g093140 33.588 262 151 9 12 263 18 266 1.59e-32 126
MS.gene05573.t1 MTR_1g090937 35.060 251 137 8 15 256 21 254 1.15e-31 118
MS.gene05573.t1 MTR_8g067735 33.577 274 154 9 1 261 20 278 2.63e-31 122
MS.gene05573.t1 MTR_4g093110 32.955 264 150 10 12 263 18 266 5.92e-30 119
MS.gene05573.t1 MTR_1g014240 32.340 235 131 7 43 261 53 275 3.32e-27 110
MS.gene05573.t1 MTR_7g116130 35.206 267 142 14 12 262 11 262 2.08e-26 108
MS.gene05573.t1 MTR_4g093040 38.265 196 100 9 67 250 73 259 5.12e-26 107
MS.gene05573.t1 MTR_7g115740 33.700 273 154 11 18 275 14 274 9.24e-26 106
MS.gene05573.t1 MTR_1g090960 32.028 281 131 8 6 274 11 243 1.27e-25 102
MS.gene05573.t1 MTR_4g093040 38.710 186 93 9 77 250 1 177 7.84e-25 103
MS.gene05573.t1 MTR_1g048360 33.636 220 120 9 51 259 56 260 1.83e-23 100
MS.gene05573.t1 MTR_4g093070 32.889 225 115 8 58 263 61 268 2.60e-23 99.8
MS.gene05573.t1 MTR_7g062940 29.588 267 153 7 12 257 3 255 4.21e-20 90.1
MS.gene05573.t1 MTR_4g093050 29.658 263 157 10 15 259 12 264 2.55e-17 82.0
MS.gene05573.t1 MTR_8g068050 37.209 129 75 2 10 133 18 145 7.71e-17 80.5
MS.gene05573.t1 MTR_5g068770 27.891 294 156 14 4 259 2 277 9.77e-16 77.4
MS.gene05573.t1 MTR_7g062950 27.925 265 160 8 12 257 3 255 1.30e-15 77.0
MS.gene05573.t1 MTR_5g025020 31.401 207 117 8 66 256 85 282 2.82e-15 75.9
MS.gene05573.t1 MTR_1g052275 28.947 266 159 8 12 257 3 258 3.17e-15 75.9
MS.gene05573.t1 MTR_7g062890 28.571 266 154 8 14 257 5 256 3.71e-15 75.5
MS.gene05573.t1 MTR_4g056320 27.757 263 136 8 6 261 14 229 4.66e-15 73.6
MS.gene05573.t1 MTR_7g062700 29.818 275 150 10 8 257 2 258 6.18e-15 75.1
MS.gene05573.t1 MTR_5g077100 29.956 227 133 7 48 264 45 255 9.91e-15 74.3
MS.gene05573.t1 MTR_7g062750 28.302 265 162 7 12 257 3 258 1.42e-14 73.9
MS.gene05573.t1 MTR_7g063030 25.556 270 173 6 4 257 3 260 4.42e-14 72.4
MS.gene05573.t1 MTR_7g063030 27.459 244 151 6 32 257 19 254 7.07e-14 72.0
MS.gene05573.t1 MTR_7g063010 27.547 265 153 10 14 257 10 256 1.36e-13 70.9
MS.gene05573.t1 MTR_5g035910 27.899 276 156 13 7 257 6 263 3.77e-13 69.7
MS.gene05573.t1 MTR_7g062680 29.143 175 114 4 12 185 3 168 2.58e-12 67.0
MS.gene05573.t1 MTR_7g062990 27.170 265 161 8 14 257 6 259 2.69e-12 67.0
MS.gene05573.t1 MTR_7g062770 30.932 236 133 7 43 257 34 260 9.02e-12 65.5
MS.gene05573.t1 MTR_7g115740 32.164 171 101 8 18 180 14 177 1.96e-11 64.3
MS.gene05573.t1 MTR_7g062900 27.234 235 134 8 43 257 34 251 2.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05573.t1 AT5G10530 34.601 263 152 9 11 263 4 256 4.00e-30 119
MS.gene05573.t1 AT5G65600 33.478 230 137 6 32 250 38 262 4.98e-27 110
MS.gene05573.t1 AT4G02420 31.496 254 139 8 25 257 21 260 1.39e-22 97.8
MS.gene05573.t1 AT2G37710 30.588 255 142 8 25 257 20 261 7.45e-22 95.5
MS.gene05573.t1 AT4G02410 32.411 253 146 7 25 260 22 266 7.24e-21 92.4
MS.gene05573.t1 AT3G16530 28.315 279 154 11 14 259 6 271 1.42e-19 86.3
MS.gene05573.t1 AT5G01560 30.556 252 144 10 32 259 30 274 7.44e-19 86.7
MS.gene05573.t1 AT3G15356 29.804 255 131 10 40 258 28 270 7.55e-19 84.3
MS.gene05573.t1 AT5G01550 28.622 283 163 10 9 259 15 290 1.13e-18 86.3
MS.gene05573.t1 AT4G29050 32.203 236 126 10 48 262 53 275 3.06e-18 84.7
MS.gene05573.t1 AT4G29050 32.203 236 126 10 48 262 39 261 3.59e-18 84.7
MS.gene05573.t1 AT2G29250 28.958 259 155 8 17 257 14 261 7.03e-18 83.6
MS.gene05573.t1 AT5G01540 29.020 255 151 8 29 259 30 278 9.87e-18 83.2
MS.gene05573.t1 AT3G53810 29.771 262 145 10 24 262 19 264 1.74e-17 82.8
MS.gene05573.t1 AT3G55550 29.918 244 144 7 32 258 26 259 1.25e-16 80.1
MS.gene05573.t1 AT5G60280 29.389 262 145 11 17 257 14 256 2.39e-16 79.3
MS.gene05573.t1 AT3G08870 27.907 258 155 10 26 259 30 280 5.81e-16 78.2
MS.gene05573.t1 AT3G08870 28.016 257 154 10 27 259 52 301 5.93e-16 78.2
MS.gene05573.t1 AT5G60310 30.000 270 148 11 12 259 9 259 9.78e-16 77.4
MS.gene05573.t1 AT2G29220 26.966 267 166 8 10 258 7 262 7.38e-15 74.7
MS.gene05573.t1 AT5G03140 29.817 218 132 7 48 255 51 257 3.24e-14 72.8
MS.gene05573.t1 AT5G60300 29.249 253 139 11 28 257 23 258 6.72e-14 72.0
MS.gene05573.t1 AT5G60300 29.249 253 139 11 28 257 23 258 6.72e-14 72.0
MS.gene05573.t1 AT5G60300 29.249 253 139 11 28 257 23 258 8.03e-14 71.6
MS.gene05573.t1 AT1G70110 27.801 241 139 10 43 262 33 259 1.05e-13 71.2
MS.gene05573.t1 AT1G53080 29.577 284 155 12 10 259 6 278 2.45e-13 68.9
MS.gene05573.t1 AT1G07460 27.758 281 148 11 12 260 6 263 3.85e-13 68.9
MS.gene05573.t1 AT5G06740 31.401 207 115 10 64 258 66 257 4.06e-13 69.7
MS.gene05573.t1 AT5G06740 31.401 207 115 10 64 258 78 269 4.20e-13 69.7
MS.gene05573.t1 AT5G55830 27.574 272 162 11 6 259 12 266 4.92e-13 69.3
MS.gene05573.t1 AT2G43700 29.185 233 138 9 41 255 24 247 5.09e-13 69.3
MS.gene05573.t1 AT2G43700 29.358 218 128 8 56 255 14 223 2.24e-12 67.4
MS.gene05573.t1 AT2G43700 29.358 218 128 8 56 255 14 223 2.24e-12 67.4
MS.gene05573.t1 AT2G43700 29.358 218 128 8 56 255 14 223 2.24e-12 67.4
MS.gene05573.t1 AT2G43700 29.358 218 128 8 56 255 14 223 2.24e-12 67.4
MS.gene05573.t1 AT5G03350 28.470 281 147 14 14 258 6 268 2.61e-12 65.9
MS.gene05573.t1 AT3G53380 33.206 262 141 13 10 255 1 244 4.08e-12 66.6
MS.gene05573.t1 AT4G04960 30.275 218 120 7 58 255 48 253 3.55e-11 63.5
MS.gene05573.t1 AT4G04960 30.275 218 120 7 58 255 48 253 4.48e-11 63.5

Find 73 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTATATTTCCGGGTTT+TGG 0.175284 3.2:-54149395 None:intergenic
ACCTGTGCTACTTATATTTC+CGG 0.201477 3.2:-54149402 None:intergenic
CTTGGAAGATGAGATTCTTT+TGG 0.243189 3.2:-54149040 None:intergenic
CAACAGTTTGAATTGATTCT+TGG 0.258091 3.2:-54149334 None:intergenic
ATTCTGCCCCTATTCACATT+TGG 0.267516 3.2:+54149138 MS.gene05573:CDS
TTCTGCCCCTATTCACATTT+GGG 0.317850 3.2:+54149139 MS.gene05573:CDS
CCTCCTTGACTATTTGATTT+CGG 0.321923 3.2:-54149281 None:intergenic
AACCACTGTGCCGTGGAGTT+TGG 0.330414 3.2:+54149463 MS.gene05573:CDS
CTTCCCTGTTGAGGTAGTTT+CGG 0.335227 3.2:-54149069 None:intergenic
TGCTATCCCAAATGTGAATA+GGG 0.336758 3.2:-54149145 None:intergenic
ACACTTTCTATAATGTTGAT+TGG 0.349095 3.2:+54149369 MS.gene05573:CDS
TTGCTATCCCAAATGTGAAT+AGG 0.349217 3.2:-54149146 None:intergenic
AATGTTGTGATAGGGTTTAA+TGG 0.356600 3.2:+54149503 MS.gene05573:CDS
GGAGAGGATAAAAGAGAAGT+TGG 0.357894 3.2:-54148931 None:intergenic
GTGGGTAAGGATTGGTTTCT+CGG 0.358994 3.2:+54149619 MS.gene05573:CDS
CACTTTCTATAATGTTGATT+GGG 0.365069 3.2:+54149370 MS.gene05573:CDS
GAGTTTGGAAAATAATAAAA+AGG 0.376135 3.2:+54149478 MS.gene05573:CDS
CCTGTGCTACTTATATTTCC+GGG 0.376831 3.2:-54149401 None:intergenic
AGTAGCACAGGTCGACATAT+TGG 0.377327 3.2:+54149413 MS.gene05573:CDS
CACATTTGGGATAGCAAAAC+CGG 0.385321 3.2:+54149152 MS.gene05573:CDS
TTCAAAGTTAGCCACGCTTC+CGG 0.394516 3.2:-54149171 None:intergenic
GATGCCGAAACTACCTCAAC+AGG 0.405066 3.2:+54149065 MS.gene05573:CDS
TACCTTCACCTTTACAATAA+CGG 0.427007 3.2:+54149196 MS.gene05573:CDS
AAGTCATGTTGTGCCTTTGA+AGG 0.442955 3.2:+54149583 MS.gene05573:CDS
AAGGCAGTCAAGAACTCTAT+TGG 0.455172 3.2:+54149104 MS.gene05573:CDS
TCAAAGGCACAACATGACTT+AGG 0.457672 3.2:-54149580 None:intergenic
TGTTGATGTTGAATATCCTT+TGG 0.459621 3.2:+54149544 MS.gene05573:CDS
GATGAAGAATGTTAAGGAGA+TGG 0.464083 3.2:-54148952 None:intergenic
TAGCAAGATGAAGAATGTTA+AGG 0.465993 3.2:-54148958 None:intergenic
ATGTTGTTCCTGAGTGGGTA+AGG 0.471213 3.2:+54149606 MS.gene05573:CDS
TCTGCAACATTATAAGTATT+AGG 0.482296 3.2:-54149221 None:intergenic
ATCAACACTCAACACATTTG+TGG 0.492912 3.2:-54149528 None:intergenic
GACAAACTTTGTGATGGAAA+AGG 0.501076 3.2:-54149012 None:intergenic
TTGAACAGAGCTTGAAACAT+TGG 0.515799 3.2:-54149729 None:intergenic
AATAGAGTTCTTGACTGCCT+TGG 0.516176 3.2:-54149102 None:intergenic
ATTAGGCGCCGTTATTGTAA+AGG 0.518797 3.2:-54149204 None:intergenic
ATTGGTTTCTCGGCTGCCAC+CGG 0.521378 3.2:+54149629 MS.gene05573:CDS
GTTCCTGAGTGGGTAAGGAT+TGG 0.522326 3.2:+54149611 MS.gene05573:CDS
AAAAGGCTAATGTTGTGATA+GGG 0.526554 3.2:+54149495 MS.gene05573:CDS
GAGGATAAAAGAGAAGTTGG+AGG 0.529010 3.2:-54148928 None:intergenic
CAAAGGCACAACATGACTTA+GGG 0.534314 3.2:-54149579 None:intergenic
CAAAAGAATCTCATCTTCCA+AGG 0.534638 3.2:+54149041 MS.gene05573:CDS
AATAGTCAAGGAGGATACCT+TGG 0.535136 3.2:+54149290 MS.gene05573:CDS
CTTCATCTTGCTAATGAACA+AGG 0.543146 3.2:+54148968 MS.gene05573:CDS
CCCGGAAATATAAGTAGCAC+AGG 0.544449 3.2:+54149401 MS.gene05573:CDS
TTTGATTCAAAGTTGAACCT+AGG 0.546087 3.2:+54149689 MS.gene05573:CDS
ATGTTCTGCATATTCGTCTC+CGG 0.546836 3.2:-54149648 None:intergenic
GATTTCGGCCGAGTATCAAT+CGG 0.548354 3.2:-54149266 None:intergenic
TCATTGCACCGATTGATACT+CGG 0.548886 3.2:+54149258 MS.gene05573:CDS
CGCCGTTATTGTAAAGGTGA+AGG 0.549680 3.2:-54149198 None:intergenic
GTCTGGGACAAACTTTGTGA+TGG 0.552038 3.2:-54149018 None:intergenic
AGGTAGTTTCGGCATCCCCT+TGG 0.552638 3.2:-54149058 None:intergenic
CATTGATGATATCAAAACCT+AGG 0.562473 3.2:-54149706 None:intergenic
GTTGATTGGGATCCAAAACC+CGG 0.571452 3.2:+54149383 MS.gene05573:CDS
AAACCAATCCTTACCCACTC+AGG 0.577788 3.2:-54149614 None:intergenic
GAAGGATGTTGTTCCTGAGT+GGG 0.579500 3.2:+54149601 MS.gene05573:CDS
TCAGGAACAACATCCTTCAA+AGG 0.591464 3.2:-54149596 None:intergenic
AGAATCAATTCAAACTGTTG+CGG 0.597952 3.2:+54149337 MS.gene05573:CDS
TGAAGGATGTTGTTCCTGAG+TGG 0.603177 3.2:+54149600 MS.gene05573:CDS
AAAAGAATCTCATCTTCCAA+GGG 0.603230 3.2:+54149042 MS.gene05573:CDS
GCTATCCCAAATGTGAATAG+GGG 0.608736 3.2:-54149144 None:intergenic
AGGGTATAATGATGAACCAA+AGG 0.609528 3.2:-54149560 None:intergenic
AGAATGTTAAGGAGATGGAG+AGG 0.611140 3.2:-54148947 None:intergenic
CGGCCGAAATCAAATAGTCA+AGG 0.616165 3.2:+54149278 MS.gene05573:CDS
TTCTGCATATTCGTCTCCGG+TGG 0.623722 3.2:-54149645 None:intergenic
AATCGATAACCACTGTGCCG+TGG 0.624556 3.2:+54149456 MS.gene05573:CDS
GGATAGCAAAACCGGAAGCG+TGG 0.638962 3.2:+54149160 MS.gene05573:CDS
AATACTTATAATGTTGCAGA+CGG 0.651921 3.2:+54149224 MS.gene05573:CDS
AAAGAATCTCATCTTCCAAG+GGG 0.694279 3.2:+54149043 MS.gene05573:CDS
CCGAAATCAAATAGTCAAGG+AGG 0.706634 3.2:+54149281 MS.gene05573:CDS
AGGGAAGTTAAAACTCACCA+AGG 0.707830 3.2:+54149085 MS.gene05573:CDS
TTCCAAACTCCACGGCACAG+TGG 0.731168 3.2:-54149465 None:intergenic
ATGCCGAAACTACCTCAACA+GGG 0.739112 3.2:+54149066 MS.gene05573:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGTTTGGAAAATAATAAAA+AGG + chr3.2:54149478-54149497 MS.gene05573:CDS 20.0%
! AATACTTATAATGTTGCAGA+CGG + chr3.2:54149224-54149243 MS.gene05573:CDS 25.0%
! ACACTTTCTATAATGTTGAT+TGG + chr3.2:54149369-54149388 MS.gene05573:CDS 25.0%
! TCTGCAACATTATAAGTATT+AGG - chr3.2:54149224-54149243 None:intergenic 25.0%
!! CACTTTCTATAATGTTGATT+GGG + chr3.2:54149370-54149389 MS.gene05573:CDS 25.0%
!! TTATTATTTTCCAAACTCCA+CGG - chr3.2:54149476-54149495 None:intergenic 25.0%
AAAAAGGCTAATGTTGTGAT+AGG + chr3.2:54149494-54149513 MS.gene05573:CDS 30.0%
AAAAGAATCTCATCTTCCAA+GGG + chr3.2:54149042-54149061 MS.gene05573:CDS 30.0%
AAAAGGCTAATGTTGTGATA+GGG + chr3.2:54149495-54149514 MS.gene05573:CDS 30.0%
AATGTTGTGATAGGGTTTAA+TGG + chr3.2:54149503-54149522 MS.gene05573:CDS 30.0%
AGAATCAATTCAAACTGTTG+CGG + chr3.2:54149337-54149356 MS.gene05573:CDS 30.0%
TACCTTCACCTTTACAATAA+CGG + chr3.2:54149196-54149215 MS.gene05573:CDS 30.0%
TAGCAAGATGAAGAATGTTA+AGG - chr3.2:54148961-54148980 None:intergenic 30.0%
TGTTGATGTTGAATATCCTT+TGG + chr3.2:54149544-54149563 MS.gene05573:CDS 30.0%
TTTGATTCAAAGTTGAACCT+AGG + chr3.2:54149689-54149708 MS.gene05573:CDS 30.0%
! CAACAGTTTGAATTGATTCT+TGG - chr3.2:54149337-54149356 None:intergenic 30.0%
! CATTGATGATATCAAAACCT+AGG - chr3.2:54149709-54149728 None:intergenic 30.0%
!!! CAGAACATGATATTTTTTCG+TGG + chr3.2:54149663-54149682 MS.gene05573:CDS 30.0%
AAAGAATCTCATCTTCCAAG+GGG + chr3.2:54149043-54149062 MS.gene05573:CDS 35.0%
AGGGTATAATGATGAACCAA+AGG - chr3.2:54149563-54149582 None:intergenic 35.0%
ATCAACACTCAACACATTTG+TGG - chr3.2:54149531-54149550 None:intergenic 35.0%
CAAAAGAATCTCATCTTCCA+AGG + chr3.2:54149041-54149060 MS.gene05573:CDS 35.0%
CTTCATCTTGCTAATGAACA+AGG + chr3.2:54148968-54148987 MS.gene05573:CDS 35.0%
GATGAAGAATGTTAAGGAGA+TGG - chr3.2:54148955-54148974 None:intergenic 35.0%
TGCTATCCCAAATGTGAATA+GGG - chr3.2:54149148-54149167 None:intergenic 35.0%
TTGAACAGAGCTTGAAACAT+TGG - chr3.2:54149732-54149751 None:intergenic 35.0%
TTGCTATCCCAAATGTGAAT+AGG - chr3.2:54149149-54149168 None:intergenic 35.0%
! AAGATGAGATTCTTTTGGTC+TGG - chr3.2:54149038-54149057 None:intergenic 35.0%
! AGATGAGATTCTTTTGGTCT+GGG - chr3.2:54149037-54149056 None:intergenic 35.0%
! CCTCCTTGACTATTTGATTT+CGG - chr3.2:54149284-54149303 None:intergenic 35.0%
! CTACTTATATTTCCGGGTTT+TGG - chr3.2:54149398-54149417 None:intergenic 35.0%
! CTTGGAAGATGAGATTCTTT+TGG - chr3.2:54149043-54149062 None:intergenic 35.0%
! GACAAACTTTGTGATGGAAA+AGG - chr3.2:54149015-54149034 None:intergenic 35.0%
!! ACCTGTGCTACTTATATTTC+CGG - chr3.2:54149405-54149424 None:intergenic 35.0%
!! TTTTGCTATCGAAAACTCCA+AGG - chr3.2:54149310-54149329 None:intergenic 35.0%
AAGGCAGTCAAGAACTCTAT+TGG + chr3.2:54149104-54149123 MS.gene05573:CDS 40.0%
AAGTCATGTTGTGCCTTTGA+AGG + chr3.2:54149583-54149602 MS.gene05573:CDS 40.0%
AATAGAGTTCTTGACTGCCT+TGG - chr3.2:54149105-54149124 None:intergenic 40.0%
AATAGTCAAGGAGGATACCT+TGG + chr3.2:54149290-54149309 MS.gene05573:CDS 40.0%
AGAATGTTAAGGAGATGGAG+AGG - chr3.2:54148950-54148969 None:intergenic 40.0%
AGGGAAGTTAAAACTCACCA+AGG + chr3.2:54149085-54149104 MS.gene05573:CDS 40.0%
ATGTTCTGCATATTCGTCTC+CGG - chr3.2:54149651-54149670 None:intergenic 40.0%
ATTCTGCCCCTATTCACATT+TGG + chr3.2:54149138-54149157 MS.gene05573:CDS 40.0%
CCGAAATCAAATAGTCAAGG+AGG + chr3.2:54149281-54149300 MS.gene05573:CDS 40.0%
GAGGATAAAAGAGAAGTTGG+AGG - chr3.2:54148931-54148950 None:intergenic 40.0%
GCTATCCCAAATGTGAATAG+GGG - chr3.2:54149147-54149166 None:intergenic 40.0%
GGAGAGGATAAAAGAGAAGT+TGG - chr3.2:54148934-54148953 None:intergenic 40.0%
TCAGGAACAACATCCTTCAA+AGG - chr3.2:54149599-54149618 None:intergenic 40.0%
TTCTGCCCCTATTCACATTT+GGG + chr3.2:54149139-54149158 MS.gene05573:CDS 40.0%
! ATTAGGCGCCGTTATTGTAA+AGG - chr3.2:54149207-54149226 None:intergenic 40.0%
! CAAAGGCACAACATGACTTA+GGG - chr3.2:54149582-54149601 None:intergenic 40.0%
! CACATTTGGGATAGCAAAAC+CGG + chr3.2:54149152-54149171 MS.gene05573:CDS 40.0%
! TCAAAGGCACAACATGACTT+AGG - chr3.2:54149583-54149602 None:intergenic 40.0%
!! CCTGTGCTACTTATATTTCC+GGG - chr3.2:54149404-54149423 None:intergenic 40.0%
!! TCATTGCACCGATTGATACT+CGG + chr3.2:54149258-54149277 MS.gene05573:CDS 40.0%
!!! GAGTTTTAACTTCCCTGTTG+AGG - chr3.2:54149081-54149100 None:intergenic 40.0%
AAACCAATCCTTACCCACTC+AGG - chr3.2:54149617-54149636 None:intergenic 45.0%
AGTAGCACAGGTCGACATAT+TGG + chr3.2:54149413-54149432 MS.gene05573:CDS 45.0%
ATGCCGAAACTACCTCAACA+GGG + chr3.2:54149066-54149085 MS.gene05573:CDS 45.0%
ATGTTGTTCCTGAGTGGGTA+AGG + chr3.2:54149606-54149625 MS.gene05573:CDS 45.0%
CCCGGAAATATAAGTAGCAC+AGG + chr3.2:54149401-54149420 MS.gene05573:CDS 45.0%
CGCCGTTATTGTAAAGGTGA+AGG - chr3.2:54149201-54149220 None:intergenic 45.0%
CGGCCGAAATCAAATAGTCA+AGG + chr3.2:54149278-54149297 MS.gene05573:CDS 45.0%
CTTCCCTGTTGAGGTAGTTT+CGG - chr3.2:54149072-54149091 None:intergenic 45.0%
GAAGGATGTTGTTCCTGAGT+GGG + chr3.2:54149601-54149620 MS.gene05573:CDS 45.0%
GATTTCGGCCGAGTATCAAT+CGG - chr3.2:54149269-54149288 None:intergenic 45.0%
GTTGATTGGGATCCAAAACC+CGG + chr3.2:54149383-54149402 MS.gene05573:CDS 45.0%
TGAAGGATGTTGTTCCTGAG+TGG + chr3.2:54149600-54149619 MS.gene05573:CDS 45.0%
TTCAAAGTTAGCCACGCTTC+CGG - chr3.2:54149174-54149193 None:intergenic 45.0%
! GTCTGGGACAAACTTTGTGA+TGG - chr3.2:54149021-54149040 None:intergenic 45.0%
!! GTGGGTAAGGATTGGTTTCT+CGG + chr3.2:54149619-54149638 MS.gene05573:CDS 45.0%
AATCGATAACCACTGTGCCG+TGG + chr3.2:54149456-54149475 MS.gene05573:CDS 50.0%
GATGCCGAAACTACCTCAAC+AGG + chr3.2:54149065-54149084 MS.gene05573:CDS 50.0%
GTTCCTGAGTGGGTAAGGAT+TGG + chr3.2:54149611-54149630 MS.gene05573:CDS 50.0%
TTCTGCATATTCGTCTCCGG+TGG - chr3.2:54149648-54149667 None:intergenic 50.0%
AACCACTGTGCCGTGGAGTT+TGG + chr3.2:54149463-54149482 MS.gene05573:CDS 55.0%
AGGTAGTTTCGGCATCCCCT+TGG - chr3.2:54149061-54149080 None:intergenic 55.0%
GGATAGCAAAACCGGAAGCG+TGG + chr3.2:54149160-54149179 MS.gene05573:CDS 55.0%
TTCCAAACTCCACGGCACAG+TGG - chr3.2:54149468-54149487 None:intergenic 55.0%
! ATTGGTTTCTCGGCTGCCAC+CGG + chr3.2:54149629-54149648 MS.gene05573:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 54148921 54149760 54148921 ID=MS.gene05573
chr3.2 mRNA 54148921 54149760 54148921 ID=MS.gene05573.t1;Parent=MS.gene05573
chr3.2 exon 54148921 54149760 54148921 ID=MS.gene05573.t1.exon1;Parent=MS.gene05573.t1
chr3.2 CDS 54148921 54149760 54148921 ID=cds.MS.gene05573.t1;Parent=MS.gene05573.t1
Gene Sequence

>MS.gene05573

ATGTCTTCCTCCAACTTCTCTTTTATCCTCTCCATCTCCTTAACATTCTTCATCTTGCTAATGAACAAGGTGAATTCAGCAGAAACAACTTCCTTTTCCATCACAAAGTTTGTCCCAGACCAAAAGAATCTCATCTTCCAAGGGGATGCCGAAACTACCTCAACAGGGAAGTTAAAACTCACCAAGGCAGTCAAGAACTCTATTGGTAGAGCTCTTTATTCTGCCCCTATTCACATTTGGGATAGCAAAACCGGAAGCGTGGCTAACTTTGAAACTACCTTCACCTTTACAATAACGGCGCCTAATACTTATAATGTTGCAGACGGTCTTGCATTCTTCATTGCACCGATTGATACTCGGCCGAAATCAAATAGTCAAGGAGGATACCTTGGAGTTTTCGATAGCAAAACTTACCAAGAATCAATTCAAACTGTTGCGGTTGAAATTGACACTTTCTATAATGTTGATTGGGATCCAAAACCCGGAAATATAAGTAGCACAGGTCGACATATTGGAATCAATGTAAACTCTATCAAATCGATAACCACTGTGCCGTGGAGTTTGGAAAATAATAAAAAGGCTAATGTTGTGATAGGGTTTAATGGTGCCACAAATGTGTTGAGTGTTGATGTTGAATATCCTTTGGTTCATCATTATACCCTAAGTCATGTTGTGCCTTTGAAGGATGTTGTTCCTGAGTGGGTAAGGATTGGTTTCTCGGCTGCCACCGGAGACGAATATGCAGAACATGATATTTTTTCGTGGTCTTTTGATTCAAAGTTGAACCTAGGTTTTGATATCATCAATGCCAATGTTTCAAGCTCTGTTCAAGATGCATAG
Protein sequence

>MS.gene05573.t1

MSSSNFSFILSISLTFFILLMNKVNSAETTSFSITKFVPDQKNLIFQGDAETTSTGKLKLTKAVKNSIGRALYSAPIHIWDSKTGSVANFETTFTFTITAPNTYNVADGLAFFIAPIDTRPKSNSQGGYLGVFDSKTYQESIQTVAVEIDTFYNVDWDPKPGNISSTGRHIGINVNSIKSITTVPWSLENNKKANVVIGFNGATNVLSVDVEYPLVHHYTLSHVVPLKDVVPEWVRIGFSAATGDEYAEHDIFSWSFDSKLNLGFDIINANVSSSVQDA