AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055758

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055758.t1 MTR_2g090950 68.584 226 66 4 1 225 18 239 2.91e-98 287
MS.gene055758.t1 MTR_2g090905 94.309 123 6 1 39 160 2 124 9.55e-81 238
MS.gene055758.t1 MTR_3g099650 35.915 142 79 4 14 155 55 184 5.06e-25 102
MS.gene055758.t1 MTR_2g436100 37.097 186 89 8 13 188 26 193 6.70e-25 100
MS.gene055758.t1 MTR_3g110190 39.394 132 72 3 22 153 15 138 4.89e-24 99.0
MS.gene055758.t1 MTR_5g064990 34.694 147 85 4 11 154 52 190 2.29e-23 97.8
MS.gene055758.t1 MTR_5g064980 33.974 156 82 6 20 167 54 196 8.20e-23 96.3
MS.gene055758.t1 MTR_4g120270 38.608 158 81 4 2 153 3 150 2.92e-22 92.8
MS.gene055758.t1 MTR_1g074190 35.878 131 74 3 23 152 55 176 4.61e-21 90.9
MS.gene055758.t1 MTR_3g071300 32.886 149 86 4 8 154 19 155 8.81e-21 86.7
MS.gene055758.t1 MTR_5g071930 37.313 134 73 3 18 149 7 131 1.02e-20 87.0
MS.gene055758.t1 MTR_5g066250 36.522 115 62 2 40 154 104 207 1.23e-20 90.5
MS.gene055758.t1 MTR_3g100400 45.122 82 39 1 73 154 128 203 2.22e-20 89.7
MS.gene055758.t1 MTR_3g078120 32.192 146 92 3 18 163 1 139 7.79e-20 83.6
MS.gene055758.t1 MTR_3g464780 43.182 88 42 2 68 152 95 177 8.32e-20 85.9
MS.gene055758.t1 MTR_7g113800 33.577 137 77 4 19 155 46 168 8.52e-20 87.4
MS.gene055758.t1 MTR_1g082550 31.655 139 83 2 17 155 49 175 2.36e-19 86.3
MS.gene055758.t1 MTR_6g087150 48.101 79 35 1 74 152 92 164 2.41e-19 86.3
MS.gene055758.t1 MTR_5g076990 34.266 143 78 5 13 153 24 152 6.54e-19 84.3
MS.gene055758.t1 MTR_8g066780 31.343 134 88 1 19 152 58 187 1.69e-18 84.0
MS.gene055758.t1 MTR_3g091620 34.783 115 67 3 36 150 64 170 2.06e-18 83.6
MS.gene055758.t1 MTR_8g066740 33.333 144 78 5 13 153 24 152 2.22e-18 82.8
MS.gene055758.t1 MTR_4g129420 44.211 95 47 2 59 152 100 189 2.91e-18 84.0
MS.gene055758.t1 MTR_7g117540 32.847 137 79 3 16 152 23 146 3.50e-18 82.0
MS.gene055758.t1 MTR_2g096350 44.304 79 40 2 74 152 106 180 6.10e-18 80.1
MS.gene055758.t1 MTR_8g023400 32.877 146 80 4 15 152 27 162 7.67e-18 81.6
MS.gene055758.t1 MTR_4g063070 46.250 80 39 2 73 152 306 381 7.90e-18 82.4
MS.gene055758.t1 MTR_8g063660 31.429 140 75 3 23 149 5 136 1.06e-17 81.3
MS.gene055758.t1 MTR_5g034790 32.886 149 81 4 15 150 43 185 1.12e-17 81.6
MS.gene055758.t1 MTR_1g492830 33.094 139 79 4 17 152 6 133 1.42e-17 79.3
MS.gene055758.t1 MTR_7g116220 29.861 144 96 3 9 150 2 142 1.51e-17 78.2
MS.gene055758.t1 MTR_5g030010 31.429 140 86 2 17 152 60 193 2.89e-17 80.5
MS.gene055758.t1 MTR_6g007737 35.461 141 79 3 19 153 71 205 3.62e-17 80.5
MS.gene055758.t1 MTR_1g070140 31.387 137 88 2 17 152 44 175 4.25e-17 79.7
MS.gene055758.t1 MTR_7g096690 39.744 78 45 1 75 152 70 145 6.82e-17 79.0
MS.gene055758.t1 MTR_5g026730 35.374 147 70 6 15 154 13 141 1.00e-16 75.9
MS.gene055758.t1 MTR_8g073120 33.065 124 73 3 29 150 26 141 1.04e-16 76.6
MS.gene055758.t1 MTR_1g100737 39.506 81 48 1 73 153 90 169 1.11e-16 76.3
MS.gene055758.t1 MTR_7g108855 41.772 79 42 1 76 154 67 141 2.19e-16 75.5
MS.gene055758.t1 MTR_5g082940 40.476 84 46 1 75 158 75 154 2.97e-16 74.3
MS.gene055758.t1 MTR_1g043410 35.714 98 54 2 75 166 94 188 6.43e-16 76.3
MS.gene055758.t1 MTR_5g024730 33.884 121 74 2 29 149 33 147 7.83e-16 74.3
MS.gene055758.t1 MTR_5g026720 29.530 149 87 3 9 154 7 140 1.07e-15 72.8
MS.gene055758.t1 MTR_6g055030 33.333 126 76 3 58 180 79 199 1.20e-15 75.5
MS.gene055758.t1 MTR_7g116180 40.506 79 38 2 75 150 67 139 1.29e-15 73.2
MS.gene055758.t1 MTR_8g009190 30.216 139 89 3 16 154 22 152 1.35e-15 75.1
MS.gene055758.t1 MTR_8g089880 39.241 79 42 1 74 152 126 198 1.37e-15 74.7
MS.gene055758.t1 MTR_8g019710 44.118 68 34 1 86 153 37 100 1.43e-15 71.6
MS.gene055758.t1 MTR_4g106680 33.803 142 80 5 17 152 44 177 1.77e-15 74.7
MS.gene055758.t1 MTR_1g070425 40.506 79 38 2 75 150 68 140 2.31e-15 72.4
MS.gene055758.t1 MTR_7g076250 40.000 75 40 2 75 149 63 132 2.39e-15 72.4
MS.gene055758.t1 MTR_8g092960 31.333 150 82 5 2 149 42 172 3.04e-15 72.8
MS.gene055758.t1 MTR_2g044570 46.377 69 34 1 84 152 63 128 3.58e-15 73.9
MS.gene055758.t1 MTR_3g114500 38.235 102 49 2 59 155 27 119 4.76e-15 70.1
MS.gene055758.t1 MTR_8g092840 32.450 151 82 4 2 149 49 182 6.99e-15 72.0
MS.gene055758.t1 MTR_2g041200 46.479 71 38 0 84 154 86 156 8.99e-15 70.9
MS.gene055758.t1 MTR_3g086700 47.458 59 31 0 96 154 64 122 1.02e-14 70.9
MS.gene055758.t1 MTR_3g094000 27.044 159 86 3 15 173 43 171 1.33e-14 70.1
MS.gene055758.t1 MTR_3g095560 34.586 133 68 3 17 149 65 178 1.53e-14 71.2
MS.gene055758.t1 MTR_1g026070 39.286 84 42 1 73 156 46 120 1.63e-14 68.9
MS.gene055758.t1 MTR_4g030070 38.372 86 46 1 69 154 79 157 1.81e-14 70.9
MS.gene055758.t1 MTR_7g116200 29.861 144 88 4 11 150 2 136 2.53e-14 69.3
MS.gene055758.t1 MTR_3g086730 47.458 59 31 0 96 154 64 122 3.06e-14 70.5
MS.gene055758.t1 MTR_8g093010 29.252 147 82 4 3 149 52 176 3.13e-14 70.1
MS.gene055758.t1 MTR_3g078470 32.323 99 56 3 57 150 55 147 4.45e-14 69.7
MS.gene055758.t1 MTR_5g064890 53.191 47 22 0 106 152 153 199 4.68e-14 71.2
MS.gene055758.t1 MTR_3g078450 29.032 124 72 4 32 150 35 147 5.44e-14 69.3
MS.gene055758.t1 MTR_7g079280 34.568 81 49 1 74 154 79 155 5.78e-14 68.6
MS.gene055758.t1 MTR_2g055790 53.846 52 24 0 105 156 98 149 6.97e-14 68.6
MS.gene055758.t1 MTR_1g056350 36.250 80 48 1 75 154 74 150 7.52e-14 67.8
MS.gene055758.t1 MTR_7g059360 59.184 49 20 0 106 154 157 205 9.68e-14 68.9
MS.gene055758.t1 MTR_5g092790 41.026 78 42 1 75 152 157 230 9.94e-14 68.9
MS.gene055758.t1 MTR_2g035800 39.506 81 43 1 73 153 74 148 1.06e-13 67.4
MS.gene055758.t1 MTR_7g073200 33.654 104 58 3 60 163 69 161 1.19e-13 67.8
MS.gene055758.t1 MTR_8g071815 42.254 71 39 1 84 154 69 137 1.27e-13 67.4
MS.gene055758.t1 MTR_4g094725 30.000 150 77 5 7 149 20 148 1.71e-13 66.6
MS.gene055758.t1 MTR_2g009310 54.167 48 22 0 105 152 159 206 1.92e-13 69.7
MS.gene055758.t1 MTR_5g092750 54.348 46 21 0 107 152 185 230 3.37e-13 67.4
MS.gene055758.t1 MTR_8g092985 40.260 77 41 1 73 149 109 180 7.61e-13 66.2
MS.gene055758.t1 MTR_3g116000 35.385 130 68 5 23 149 30 146 9.43e-13 65.5
MS.gene055758.t1 MTR_4g056590 35.897 78 41 1 75 152 100 168 1.01e-12 65.5
MS.gene055758.t1 MTR_4g093830 41.250 80 43 1 106 181 151 230 1.05e-12 67.4
MS.gene055758.t1 MTR_8g092930 59.091 44 18 0 106 149 138 181 1.65e-12 65.5
MS.gene055758.t1 MTR_5g026260 42.857 77 33 4 79 152 482 550 2.61e-12 66.6
MS.gene055758.t1 MTR_5g022920 33.628 113 59 2 49 149 123 231 2.78e-12 64.7
MS.gene055758.t1 MTR_8g074900 55.102 49 22 0 101 149 174 222 2.93e-12 64.7
MS.gene055758.t1 MTR_8g092990 56.818 44 19 0 106 149 140 183 3.07e-12 64.7
MS.gene055758.t1 MTR_8g092970 56.818 44 19 0 106 149 130 173 3.34e-12 64.3
MS.gene055758.t1 MTR_4g022410 46.032 63 28 1 90 152 102 158 3.35e-12 63.9
MS.gene055758.t1 MTR_3g012550 31.111 90 58 1 75 164 80 165 3.75e-12 63.5
MS.gene055758.t1 MTR_8g032690 48.837 43 22 0 107 149 19 61 4.55e-12 61.6
MS.gene055758.t1 MTR_6g055030 41.667 72 42 0 109 180 97 168 5.24e-12 64.7
MS.gene055758.t1 MTR_8g028465 32.500 80 46 1 75 154 90 161 6.15e-12 63.5
MS.gene055758.t1 MTR_4g116460 34.211 76 48 2 78 152 412 486 6.72e-12 65.1
MS.gene055758.t1 MTR_4g116460 34.211 76 48 2 78 152 455 529 7.52e-12 65.1
MS.gene055758.t1 MTR_7g079290 32.500 80 52 1 75 154 125 202 7.92e-12 63.2
MS.gene055758.t1 MTR_4g108830 36.250 80 44 1 73 152 119 191 1.09e-11 62.4
MS.gene055758.t1 MTR_4g108830 36.250 80 44 1 73 152 147 219 1.16e-11 62.8
MS.gene055758.t1 MTR_8g099515 39.506 81 41 2 75 153 309 383 1.33e-11 64.3
MS.gene055758.t1 MTR_1g090480 27.407 135 84 5 24 154 25 149 1.83e-11 61.2
MS.gene055758.t1 MTR_3g091200 36.264 91 51 3 74 163 302 386 2.08e-11 63.5
MS.gene055758.t1 MTR_8g027980 38.158 76 40 2 79 152 94 164 3.25e-11 62.4
MS.gene055758.t1 MTR_4g064550 42.623 61 34 1 92 152 200 259 3.48e-11 62.4
MS.gene055758.t1 MTR_6g007670 38.889 72 37 1 81 152 14 78 3.89e-11 62.0
MS.gene055758.t1 MTR_6g007680 39.130 69 36 1 84 152 49 111 4.64e-11 60.1
MS.gene055758.t1 MTR_8g099495 48.936 47 24 0 107 153 347 393 6.57e-11 62.0
MS.gene055758.t1 MTR_1g090450 60.000 35 14 0 115 149 115 149 6.92e-11 59.7
MS.gene055758.t1 MTR_3g081030 35.897 78 43 1 79 156 98 168 7.49e-11 60.5
MS.gene055758.t1 MTR_7g117350 32.500 80 54 0 75 154 290 369 7.80e-11 62.0
MS.gene055758.t1 MTR_7g117350 32.500 80 54 0 75 154 282 361 8.32e-11 61.6
MS.gene055758.t1 MTR_7g078150 44.643 56 30 1 105 159 88 143 8.63e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055758.t1 AT2G42350 43.005 193 85 8 37 225 46 217 3.18e-40 138
MS.gene055758.t1 AT2G42360 40.000 225 107 8 14 225 27 236 3.26e-39 136
MS.gene055758.t1 AT3G16720 40.252 159 77 5 3 153 17 165 1.37e-25 102
MS.gene055758.t1 AT4G15975 46.316 95 42 2 62 154 36 123 1.15e-22 93.2
MS.gene055758.t1 AT2G35420 32.667 150 81 3 14 156 16 152 9.92e-22 91.3
MS.gene055758.t1 AT2G20030 48.101 79 35 1 74 152 97 169 4.35e-21 91.7
MS.gene055758.t1 AT5G05810 46.341 82 38 1 73 154 118 193 4.99e-21 91.7
MS.gene055758.t1 AT2G35000 35.115 131 81 2 23 152 53 180 9.22e-21 90.5
MS.gene055758.t1 AT4G09120 33.880 183 96 6 22 204 53 210 9.52e-21 90.1
MS.gene055758.t1 AT2G47560 32.877 146 89 3 13 158 23 159 1.79e-20 87.4
MS.gene055758.t1 AT1G35330 33.333 135 84 3 24 155 46 177 1.79e-20 89.0
MS.gene055758.t1 AT2G34990 34.194 155 86 6 18 170 37 177 3.15e-20 88.2
MS.gene055758.t1 AT1G20823 37.778 135 69 5 19 149 30 153 3.22e-20 85.9
MS.gene055758.t1 AT2G34990 34.194 155 86 6 18 170 15 155 3.23e-20 87.8
MS.gene055758.t1 AT3G05200 31.618 136 82 2 17 152 49 173 3.45e-20 89.0
MS.gene055758.t1 AT1G72200 35.211 142 82 4 14 154 59 191 1.04e-19 87.8
MS.gene055758.t1 AT4G40070 34.127 126 77 3 30 155 53 172 1.58e-19 86.3
MS.gene055758.t1 AT4G09100 37.302 126 71 3 29 154 15 132 1.62e-19 82.0
MS.gene055758.t1 AT5G43420 43.678 87 39 2 75 152 98 183 1.63e-19 87.0
MS.gene055758.t1 AT4G17905 33.566 143 84 4 17 152 62 200 2.53e-19 85.5
MS.gene055758.t1 AT1G22500 35.211 142 70 5 21 154 38 165 3.35e-19 86.3
MS.gene055758.t1 AT2G34000 33.557 149 87 3 6 154 2 138 3.60e-19 81.6
MS.gene055758.t1 AT4G28890 44.304 79 38 1 74 152 96 168 3.88e-19 86.3
MS.gene055758.t1 AT5G27420 33.813 139 74 4 27 159 55 181 4.69e-19 85.5
MS.gene055758.t1 AT4G09130 35.075 134 76 3 62 193 78 202 4.82e-19 85.5
MS.gene055758.t1 AT4G17905 33.566 143 84 4 17 152 88 226 5.67e-19 85.1
MS.gene055758.t1 AT5G46650 32.168 143 87 5 17 154 25 162 1.05e-18 83.6
MS.gene055758.t1 AT1G23980 34.228 149 79 5 13 149 45 186 1.33e-18 84.3
MS.gene055758.t1 AT3G62690 36.111 144 79 6 15 154 26 160 1.84e-18 82.4
MS.gene055758.t1 AT1G04360 45.783 83 40 2 73 152 99 179 1.97e-18 84.0
MS.gene055758.t1 AT4G09110 35.443 158 76 8 8 162 40 174 2.68e-18 82.8
MS.gene055758.t1 AT4G10150 30.636 173 97 4 24 189 36 192 2.95e-18 81.3
MS.gene055758.t1 AT4G30400 44.565 92 45 2 59 149 90 176 5.09e-18 83.2
MS.gene055758.t1 AT1G72310 38.525 122 62 3 73 193 100 209 9.05e-18 81.6
MS.gene055758.t1 AT1G53820 44.944 89 40 2 66 152 84 165 1.09e-17 81.3
MS.gene055758.t1 AT3G14320 41.573 89 45 1 64 152 52 133 1.98e-17 78.6
MS.gene055758.t1 AT2G17450 44.048 84 46 1 72 154 66 149 2.99e-17 77.4
MS.gene055758.t1 AT2G18650 43.158 95 48 2 59 152 82 171 3.09e-17 80.9
MS.gene055758.t1 AT1G72220 28.649 185 105 7 8 179 74 244 5.38e-17 80.1
MS.gene055758.t1 AT1G76410 36.220 127 68 4 28 149 28 146 6.75e-17 76.6
MS.gene055758.t1 AT5G40250 32.237 152 92 4 19 159 45 196 2.16e-16 78.2
MS.gene055758.t1 AT1G49230 37.594 133 62 4 17 149 62 173 4.18e-16 75.1
MS.gene055758.t1 AT5G17600 31.655 139 81 3 18 152 59 187 5.50e-16 77.0
MS.gene055758.t1 AT4G33565 41.975 81 35 2 75 152 191 262 6.23e-16 76.6
MS.gene055758.t1 AT3G48030 45.000 80 33 2 73 149 100 171 8.68e-16 75.1
MS.gene055758.t1 AT3G48030 45.000 80 33 2 73 149 178 249 8.89e-16 76.3
MS.gene055758.t1 AT4G10160 28.402 169 100 4 24 189 28 178 9.02e-16 74.3
MS.gene055758.t1 AT1G32361 38.384 99 50 3 71 166 126 216 1.03e-15 75.9
MS.gene055758.t1 AT3G18930 42.683 82 43 1 75 152 120 201 1.21e-15 76.3
MS.gene055758.t1 AT3G18930 42.683 82 43 1 75 152 120 201 1.21e-15 76.3
MS.gene055758.t1 AT3G18930 42.683 82 43 1 75 152 120 201 1.21e-15 76.3
MS.gene055758.t1 AT3G10910 32.353 136 75 3 17 149 35 156 2.06e-15 72.4
MS.gene055758.t1 AT5G58580 41.250 80 42 1 73 152 109 183 2.33e-15 74.7
MS.gene055758.t1 AT5G10380 35.088 114 68 1 72 185 106 213 2.81e-15 74.3
MS.gene055758.t1 AT4G17920 31.915 141 85 5 17 153 23 156 3.20e-15 73.9
MS.gene055758.t1 AT3G60220 34.028 144 86 2 80 223 93 227 3.99e-15 74.3
MS.gene055758.t1 AT3G03550 45.333 75 35 2 76 150 134 202 4.45e-15 74.3
MS.gene055758.t1 AT2G27940 35.526 76 42 1 75 150 115 183 4.54e-15 72.8
MS.gene055758.t1 AT5G57750 34.014 147 84 6 11 149 23 164 8.64e-15 71.6
MS.gene055758.t1 AT4G17245 34.028 144 70 5 10 152 29 148 9.45e-15 70.5
MS.gene055758.t1 AT3G61550 35.789 95 56 1 75 164 99 193 9.49e-15 71.2
MS.gene055758.t1 AT2G46160 32.609 92 60 1 75 164 104 195 2.07e-14 70.5
MS.gene055758.t1 AT2G46160 32.609 92 60 1 75 164 104 195 2.07e-14 70.5
MS.gene055758.t1 AT3G11110 33.108 148 82 6 10 152 17 152 2.16e-14 69.3
MS.gene055758.t1 AT3G19140 40.000 80 41 1 74 153 53 125 3.20e-14 68.2
MS.gene055758.t1 AT1G49220 34.014 147 71 6 10 149 50 177 4.20e-14 70.5
MS.gene055758.t1 AT5G01880 35.644 101 57 2 49 149 55 147 5.14e-14 68.2
MS.gene055758.t1 AT1G49200 33.103 145 75 6 10 149 51 178 5.28e-14 69.7
MS.gene055758.t1 AT1G53010 31.757 148 86 3 17 149 25 172 6.25e-14 68.6
MS.gene055758.t1 AT1G33480 30.864 162 89 6 75 221 75 228 7.46e-14 69.7
MS.gene055758.t1 AT4G35480 35.514 107 59 2 58 154 54 160 8.14e-14 68.6
MS.gene055758.t1 AT1G49210 33.099 142 79 5 10 149 50 177 8.75e-14 68.9
MS.gene055758.t1 AT2G37580 44.286 70 33 1 90 159 131 194 9.87e-14 68.9
MS.gene055758.t1 AT2G17730 37.234 94 55 2 60 152 151 241 1.12e-13 68.9
MS.gene055758.t1 AT1G74410 34.524 84 49 1 70 153 145 222 2.38e-13 67.8
MS.gene055758.t1 AT1G28040 32.836 134 77 5 19 149 172 295 2.72e-13 68.6
MS.gene055758.t1 AT2G46493 37.895 95 49 3 60 149 91 180 5.66e-13 65.9
MS.gene055758.t1 AT5G06490 34.066 91 51 2 75 160 96 182 6.46e-13 66.2
MS.gene055758.t1 AT2G18670 37.079 89 50 2 75 163 83 165 7.71e-13 65.5
MS.gene055758.t1 AT5G66070 51.923 52 25 0 98 149 167 218 7.94e-13 66.2
MS.gene055758.t1 AT5G66070 51.923 52 25 0 98 149 167 218 7.94e-13 66.2
MS.gene055758.t1 AT4G30370 37.179 78 43 1 75 152 89 160 9.62e-13 65.1
MS.gene055758.t1 AT5G07040 25.191 131 90 2 24 154 19 141 1.12e-12 64.7
MS.gene055758.t1 AT5G66070 51.923 52 25 0 98 149 191 242 1.62e-12 65.9
MS.gene055758.t1 AT2G46495 32.374 139 82 5 16 154 241 367 2.05e-12 66.6
MS.gene055758.t1 AT5G05280 56.818 44 19 0 106 149 112 155 2.20e-12 64.3
MS.gene055758.t1 AT2G25410 31.333 150 88 6 10 154 235 374 2.78e-12 66.2
MS.gene055758.t1 AT4G35840 37.500 96 55 2 55 149 142 233 2.81e-12 65.1
MS.gene055758.t1 AT5G53110 30.233 129 81 2 25 153 257 376 3.61e-12 65.9
MS.gene055758.t1 AT3G18773 40.260 77 41 1 73 149 101 172 4.06e-12 64.3
MS.gene055758.t1 AT2G35910 36.250 80 45 1 75 154 121 194 4.89e-12 63.9
MS.gene055758.t1 AT5G42200 47.059 51 27 0 106 156 103 153 5.39e-12 62.8
MS.gene055758.t1 AT5G47610 38.571 70 38 1 83 152 88 152 5.53e-12 62.8
MS.gene055758.t1 AT3G20395 37.333 75 39 1 75 149 147 213 7.71e-12 63.5
MS.gene055758.t1 AT5G66160 37.634 93 47 4 76 164 207 292 1.23e-11 63.9
MS.gene055758.t1 AT1G26800 48.936 47 23 1 106 152 112 157 1.42e-11 62.4
MS.gene055758.t1 AT1G80400 34.375 96 44 3 75 152 305 399 2.24e-11 63.5
MS.gene055758.t1 AT4G26580 36.000 75 47 1 75 149 257 330 2.42e-11 63.2
MS.gene055758.t1 AT4G26580 36.000 75 47 1 75 149 257 330 2.42e-11 63.2
MS.gene055758.t1 AT3G60966 45.763 59 30 1 96 154 53 109 3.33e-11 60.1
MS.gene055758.t1 AT2G46495 38.272 81 47 2 74 154 262 339 4.13e-11 62.4
MS.gene055758.t1 AT2G44578 43.750 64 34 1 107 170 70 131 9.20e-11 58.9
MS.gene055758.t1 AT3G43430 49.123 57 20 1 107 154 83 139 9.59e-11 59.3

Find 61 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCACATTCAACAATATTAT+TGG 0.123870 2.1:-10042149 None:intergenic
CTTCTCGGAGGATTCTTATT+AGG 0.160412 2.1:+10042422 MS.gene055758:CDS
TGTTGGGTGGTTCTGTTAAT+TGG 0.182461 2.1:-10042045 None:intergenic
AAGAAACTATGCATCATTTA+AGG 0.219432 2.1:+10042561 MS.gene055758:CDS
CTTATTAGGGATAGATCTTT+AGG 0.260219 2.1:+10042436 MS.gene055758:CDS
TCAACCTTGGTTCGACAAAT+TGG 0.263735 2.1:-10042283 None:intergenic
AACAATAGAAAGTATAGATT+TGG 0.269300 2.1:+10042537 MS.gene055758:CDS
CTCAATGCTGAAATATCTTT+GGG 0.301879 2.1:-10042397 None:intergenic
GCTCAATGCTGAAATATCTT+TGG 0.304836 2.1:-10042398 None:intergenic
TTCTCGGAGGATTCTTATTA+GGG 0.306636 2.1:+10042423 MS.gene055758:CDS
TCATTAATCACGAAGCTCTT+AGG 0.311772 2.1:+10041975 MS.gene055758:CDS
GGAAGAGTAGTGATGAGCTT+AGG 0.348515 2.1:-10042079 None:intergenic
ATCAATGAAGTTGGTGACTT+TGG 0.365957 2.1:-10042588 None:intergenic
AAATAGTGCTAAGGAAACTA+TGG 0.397834 2.1:-10041912 None:intergenic
ACTACCATGAGTAACTTCTA+TGG 0.409036 2.1:+10041842 None:intergenic
GTTGGGTGGTTCTGTTAATT+GGG 0.421651 2.1:-10042044 None:intergenic
TCAAATGGTGGTGGTGTTAG+TGG 0.422429 2.1:+10042370 MS.gene055758:CDS
TTTCAGCATTGAGCTCTTCT+CGG 0.434663 2.1:+10042407 MS.gene055758:CDS
GGTGTGTTTGAGTTTATTGC+AGG 0.439036 2.1:+10042171 MS.gene055758:CDS
GAAGAGTAGTGATGAGCTTA+GGG 0.463676 2.1:-10042078 None:intergenic
CCATCTGAATGCACATCAAA+TGG 0.464565 2.1:+10042355 MS.gene055758:CDS
TGAAAACTATGCTTACAATT+CGG 0.483904 2.1:-10042217 None:intergenic
ATGCAAATCATCAATGAAGT+TGG 0.485224 2.1:-10042597 None:intergenic
TAATCGTGAGGAGTACTAGA+AGG 0.494576 2.1:-10042469 None:intergenic
CTTAGGGTCGAGACCAGTGT+TGG 0.501922 2.1:-10042062 None:intergenic
TTCAAGCCTCGGCTCAACCT+TGG 0.504204 2.1:-10042296 None:intergenic
GGTGAGTCTCACATCGCCAT+TGG 0.505187 2.1:-10042005 None:intergenic
ATCATGATTTAGAGCGGCAA+TGG 0.507782 2.1:+10042503 MS.gene055758:CDS
CGTGAGGAGTACTAGAAGGT+TGG 0.517114 2.1:-10042465 None:intergenic
CTCTTCACAAGATCTACTCC+AGG 0.542499 2.1:+10041951 MS.gene055758:CDS
TTAGGGTCGAGACCAGTGTT+GGG 0.551891 2.1:-10042061 None:intergenic
AACAAAGTGGGGCCCTCGCG+TGG 0.553114 2.1:-10042325 None:intergenic
AGCTTCGTGATTAATGAACC+TGG 0.563619 2.1:-10041969 None:intergenic
CGTGGCTCTAGTTCAAGCCT+CGG 0.570266 2.1:-10042307 None:intergenic
AGATGGTGGTTCAAACAAAG+TGG 0.581605 2.1:-10042338 None:intergenic
CCATTTGATGTGCATTCAGA+TGG 0.582468 2.1:-10042355 None:intergenic
GATGGTGGTTCAAACAAAGT+GGG 0.588352 2.1:-10042337 None:intergenic
CAATAATATTGTTGAATGTG+CGG 0.603074 2.1:+10042150 MS.gene055758:CDS
TTTGATGTGCATTCAGATGG+TGG 0.603135 2.1:-10042352 None:intergenic
TAATTGGGTGTGAGCTTGAG+TGG 0.608708 2.1:-10042029 None:intergenic
GGCTATCGAGACCATGAGAA+CGG 0.609439 2.1:+10041863 MS.gene055758:CDS
GGGTCGAGACCAGTGTTGGG+TGG 0.609948 2.1:-10042058 None:intergenic
CAGCATTGAGCTCTTCTCGG+AGG 0.613663 2.1:+10042410 MS.gene055758:CDS
ATGTGGGTTGTATTGACAAG+TGG 0.615353 2.1:+10042239 MS.gene055758:CDS
CAATTGATCATGATTTAGAG+CGG 0.621510 2.1:+10042497 MS.gene055758:CDS
CAAATGGTGGTGGTGTTAGT+GGG 0.623939 2.1:+10042371 MS.gene055758:CDS
GTGTCCAATTTGTCGAACCA+AGG 0.627627 2.1:+10042279 MS.gene055758:CDS
TTAACAGAACCACCCAACAC+TGG 0.637515 2.1:+10042049 MS.gene055758:CDS
GCTTGAACTAGAGCCACGCG+AGG 0.644876 2.1:+10042312 MS.gene055758:CDS
CAATGCTGAAATATCTTTGG+GGG 0.646583 2.1:-10042395 None:intergenic
ATAGCCATAGAAGTTACTCA+TGG 0.648247 2.1:-10041846 None:intergenic
GTCGAACCAAGGTTGAGCCG+AGG 0.648386 2.1:+10042290 MS.gene055758:CDS
GAATGCACATCAAATGGTGG+TGG 0.649668 2.1:+10042361 MS.gene055758:CDS
TCAATGCTGAAATATCTTTG+GGG 0.653177 2.1:-10042396 None:intergenic
GCTCTTAGGAGAGCAGCCAA+TGG 0.666165 2.1:+10041989 MS.gene055758:CDS
TGCAGGATGAAGAAATGATG+AGG 0.669651 2.1:+10042188 MS.gene055758:CDS
CTTGAACTAGAGCCACGCGA+GGG 0.677949 2.1:+10042313 MS.gene055758:CDS
ATGGTGGTTCAAACAAAGTG+GGG 0.678900 2.1:-10042336 None:intergenic
TCAATTGTAATATAATCGTG+AGG 0.701557 2.1:-10042481 None:intergenic
TTGGGTGTGAGCTTGAGTGG+CGG 0.703498 2.1:-10042026 None:intergenic
TCTGAATGCACATCAAATGG+TGG 0.727041 2.1:+10042358 MS.gene055758:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATTAAAAATAGTGCTA+AGG - chr2.1:10041924-10041943 None:intergenic 20.0%
!!! AACAATAGAAAGTATAGATT+TGG + chr2.1:10042537-10042556 MS.gene055758:CDS 20.0%
! AAGAAACTATGCATCATTTA+AGG + chr2.1:10042561-10042580 MS.gene055758:CDS 25.0%
! CAATAATATTGTTGAATGTG+CGG + chr2.1:10042150-10042169 MS.gene055758:CDS 25.0%
! TCAATTGTAATATAATCGTG+AGG - chr2.1:10042484-10042503 None:intergenic 25.0%
! TGAAAACTATGCTTACAATT+CGG - chr2.1:10042220-10042239 None:intergenic 25.0%
AAATAGTGCTAAGGAAACTA+TGG - chr2.1:10041915-10041934 None:intergenic 30.0%
CAATTGATCATGATTTAGAG+CGG + chr2.1:10042497-10042516 MS.gene055758:CDS 30.0%
CGCACATTCAACAATATTAT+TGG - chr2.1:10042152-10042171 None:intergenic 30.0%
CTCAATGCTGAAATATCTTT+GGG - chr2.1:10042400-10042419 None:intergenic 30.0%
CTTATTAGGGATAGATCTTT+AGG + chr2.1:10042436-10042455 MS.gene055758:CDS 30.0%
TCAATGCTGAAATATCTTTG+GGG - chr2.1:10042399-10042418 None:intergenic 30.0%
! TGTAAGCATAGTTTTCATGT+GGG + chr2.1:10042223-10042242 MS.gene055758:CDS 30.0%
! TTGTAAGCATAGTTTTCATG+TGG + chr2.1:10042222-10042241 MS.gene055758:CDS 30.0%
!! TTTTGTTTGAAGAGGAAAGT+AGG - chr2.1:10042103-10042122 None:intergenic 30.0%
CAATGCTGAAATATCTTTGG+GGG - chr2.1:10042398-10042417 None:intergenic 35.0%
GCTCAATGCTGAAATATCTT+TGG - chr2.1:10042401-10042420 None:intergenic 35.0%
TCATTAATCACGAAGCTCTT+AGG + chr2.1:10041975-10041994 MS.gene055758:CDS 35.0%
TTCTCGGAGGATTCTTATTA+GGG + chr2.1:10042423-10042442 MS.gene055758:CDS 35.0%
!! CTTGATGCTTTTGTTTGAAG+AGG - chr2.1:10042111-10042130 None:intergenic 35.0%
AGCTTCGTGATTAATGAACC+TGG - chr2.1:10041972-10041991 None:intergenic 40.0%
ATGGTGGTTCAAACAAAGTG+GGG - chr2.1:10042339-10042358 None:intergenic 40.0%
CCATCTGAATGCACATCAAA+TGG + chr2.1:10042355-10042374 MS.gene055758:CDS 40.0%
CCATTTGATGTGCATTCAGA+TGG - chr2.1:10042358-10042377 None:intergenic 40.0%
CTTCTCGGAGGATTCTTATT+AGG + chr2.1:10042422-10042441 MS.gene055758:CDS 40.0%
GAAGAGTAGTGATGAGCTTA+GGG - chr2.1:10042081-10042100 None:intergenic 40.0%
TCTGAATGCACATCAAATGG+TGG + chr2.1:10042358-10042377 MS.gene055758:CDS 40.0%
TGCAGGATGAAGAAATGATG+AGG + chr2.1:10042188-10042207 MS.gene055758:CDS 40.0%
TTTGATGTGCATTCAGATGG+TGG - chr2.1:10042355-10042374 None:intergenic 40.0%
! AGATGGTGGTTCAAACAAAG+TGG - chr2.1:10042341-10042360 None:intergenic 40.0%
! ATCATGATTTAGAGCGGCAA+TGG + chr2.1:10042503-10042522 MS.gene055758:CDS 40.0%
! ATGTGGGTTGTATTGACAAG+TGG + chr2.1:10042239-10042258 MS.gene055758:CDS 40.0%
! GATGGTGGTTCAAACAAAGT+GGG - chr2.1:10042340-10042359 None:intergenic 40.0%
! GGTGTGTTTGAGTTTATTGC+AGG + chr2.1:10042171-10042190 MS.gene055758:CDS 40.0%
! GTTGGGTGGTTCTGTTAATT+GGG - chr2.1:10042047-10042066 None:intergenic 40.0%
! TCAACCTTGGTTCGACAAAT+TGG - chr2.1:10042286-10042305 None:intergenic 40.0%
! TGTTGGGTGGTTCTGTTAAT+TGG - chr2.1:10042048-10042067 None:intergenic 40.0%
! TTTCAGCATTGAGCTCTTCT+CGG + chr2.1:10042407-10042426 MS.gene055758:CDS 40.0%
! TTTTGTTGAAGCCGTTCTCA+TGG - chr2.1:10041877-10041896 None:intergenic 40.0%
!! TAATCGTGAGGAGTACTAGA+AGG - chr2.1:10042472-10042491 None:intergenic 40.0%
CTCTTCACAAGATCTACTCC+AGG + chr2.1:10041951-10041970 MS.gene055758:CDS 45.0%
GAATGCACATCAAATGGTGG+TGG + chr2.1:10042361-10042380 MS.gene055758:CDS 45.0%
GGAAGAGTAGTGATGAGCTT+AGG - chr2.1:10042082-10042101 None:intergenic 45.0%
GTGTCCAATTTGTCGAACCA+AGG + chr2.1:10042279-10042298 MS.gene055758:CDS 45.0%
TAATTGGGTGTGAGCTTGAG+TGG - chr2.1:10042032-10042051 None:intergenic 45.0%
TTAACAGAACCACCCAACAC+TGG + chr2.1:10042049-10042068 MS.gene055758:CDS 45.0%
!! CAAATGGTGGTGGTGTTAGT+GGG + chr2.1:10042371-10042390 MS.gene055758:CDS 45.0%
!! TCAAATGGTGGTGGTGTTAG+TGG + chr2.1:10042370-10042389 MS.gene055758:CDS 45.0%
GGCTATCGAGACCATGAGAA+CGG + chr2.1:10041863-10041882 MS.gene055758:CDS 50.0%
TTAGGGTCGAGACCAGTGTT+GGG - chr2.1:10042064-10042083 None:intergenic 50.0%
!! CGTGAGGAGTACTAGAAGGT+TGG - chr2.1:10042468-10042487 None:intergenic 50.0%
CTTAGGGTCGAGACCAGTGT+TGG - chr2.1:10042065-10042084 None:intergenic 55.0%
CTTGAACTAGAGCCACGCGA+GGG + chr2.1:10042313-10042332 MS.gene055758:CDS 55.0%
GCTCTTAGGAGAGCAGCCAA+TGG + chr2.1:10041989-10042008 MS.gene055758:CDS 55.0%
GGTGAGTCTCACATCGCCAT+TGG - chr2.1:10042008-10042027 None:intergenic 55.0%
TTCAAGCCTCGGCTCAACCT+TGG - chr2.1:10042299-10042318 None:intergenic 55.0%
TTGGGTGTGAGCTTGAGTGG+CGG - chr2.1:10042029-10042048 None:intergenic 55.0%
! CAGCATTGAGCTCTTCTCGG+AGG + chr2.1:10042410-10042429 MS.gene055758:CDS 55.0%
!! CGTGGCTCTAGTTCAAGCCT+CGG - chr2.1:10042310-10042329 None:intergenic 55.0%
GCTTGAACTAGAGCCACGCG+AGG + chr2.1:10042312-10042331 MS.gene055758:CDS 60.0%
GTCGAACCAAGGTTGAGCCG+AGG + chr2.1:10042290-10042309 MS.gene055758:CDS 60.0%
AACAAAGTGGGGCCCTCGCG+TGG - chr2.1:10042328-10042347 None:intergenic 65.0%
! GGGTCGAGACCAGTGTTGGG+TGG - chr2.1:10042061-10042080 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10041848 10042609 10041848 ID=MS.gene055758
chr2.1 mRNA 10041848 10042609 10041848 ID=MS.gene055758.t1;Parent=MS.gene055758
chr2.1 exon 10041848 10042609 10041848 ID=MS.gene055758.t1.exon1;Parent=MS.gene055758.t1
chr2.1 CDS 10041848 10042609 10041848 ID=cds.MS.gene055758.t1;Parent=MS.gene055758.t1
Gene Sequence

>MS.gene055758

ATGAGTAACTTCTATGGCTATCGAGACCATGAGAACGGCTTCAACAAAATAATGTTGCTTAGCACCATAGTTTCCTTAGCACTATTTTTAATTCTAATGTTCGCTCTTCACAAGATCTACTCCAGGTTCATTAATCACGAAGCTCTTAGGAGAGCAGCCAATGGCGATGTGAGACTCACCGCCACTCAAGCTCACACCCAATTAACAGAACCACCCAACACTGGTCTCGACCCTAAGCTCATCACTACTCTTCCTACTTTCCTCTTCAAACAAAAGCATCAAGAAGAAAATAACAATGTTTCCAATAATATTGTTGAATGTGCGGTGTGTTTGAGTTTATTGCAGGATGAAGAAATGATGAGGTTGCTTCCGAATTGTAAGCATAGTTTTCATGTGGGTTGTATTGACAAGTGGTTAGCTTCGCATTCAACGTGTCCAATTTGTCGAACCAAGGTTGAGCCGAGGCTTGAACTAGAGCCACGCGAGGGCCCCACTTTGTTTGAACCACCATCTGAATGCACATCAAATGGTGGTGGTGTTAGTGGGTCCCCCAAAGATATTTCAGCATTGAGCTCTTCTCGGAGGATTCTTATTAGGGATAGATCTTTAGGAAGAATCCAACCTTCTAGTACTCCTCACGATTATATTACAATTGATCATGATTTAGAGCGGCAATGGCTTTCTTCTTTAACAATAGAAAGTATAGATTTGGAAAGAAACTATGCATCATTTAAGGTTAGCCAAAGTCACCAACTTCATTGA
Protein sequence

>MS.gene055758.t1

MSNFYGYRDHENGFNKIMLLSTIVSLALFLILMFALHKIYSRFINHEALRRAANGDVRLTATQAHTQLTEPPNTGLDPKLITTLPTFLFKQKHQEENNNVSNNIVECAVCLSLLQDEEMMRLLPNCKHSFHVGCIDKWLASHSTCPICRTKVEPRLELEPREGPTLFEPPSECTSNGGGVSGSPKDISALSSSRRILIRDRSLGRIQPSSTPHDYITIDHDLERQWLSSLTIESIDLERNYASFKVSQSHQLH