AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055788

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055788.t1 MTR_2g090595 98.228 395 7 0 19 413 110 504 0.0 808
MS.gene055788.t1 MTR_2g090595 96.552 319 11 0 20 338 111 429 0.0 525
MS.gene055788.t1 MTR_4g088520 46.766 402 178 9 20 413 58 431 2.52e-113 339
MS.gene055788.t1 MTR_4g088520 44.385 374 172 9 48 413 1 346 1.03e-94 288
MS.gene055788.t1 MTR_6g080720 54.464 112 50 1 17 128 23 133 3.30e-39 139
MS.gene055788.t1 MTR_4g091110 61.458 96 36 1 19 114 84 178 2.55e-37 136
MS.gene055788.t1 MTR_4g058600 76.364 55 13 0 48 102 1 55 9.14e-26 99.8
MS.gene055788.t1 MTR_7g056100 30.709 127 71 3 289 413 44 155 5.19e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055788.t1 AT5G44280 47.772 404 188 10 23 412 3 397 4.40e-113 337
MS.gene055788.t1 AT5G44280 47.304 408 192 10 19 412 121 519 5.26e-112 338
MS.gene055788.t1 AT1G03770 45.823 395 184 6 21 412 1 368 6.42e-99 300
MS.gene055788.t1 AT1G03770 45.823 395 184 6 21 412 1 368 6.42e-99 300
MS.gene055788.t1 AT1G03770 45.844 397 185 6 19 412 90 459 8.97e-99 302
MS.gene055788.t1 AT1G03770 45.844 397 185 6 19 412 88 457 9.12e-99 302
MS.gene055788.t1 AT1G03770 45.161 403 185 7 19 412 90 465 3.08e-96 296
MS.gene055788.t1 AT5G44280 41.019 412 215 12 19 412 121 522 1.97e-84 267
MS.gene055788.t1 AT1G03770 43.750 368 177 6 48 412 1 341 4.78e-83 258
MS.gene055788.t1 AT1G28327 24.281 313 170 11 119 411 7 272 2.40e-11 64.3

Find 88 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCATACTTCTCAATATT+TGG 0.065158 2.1:+10372630 None:intergenic
GATCCAAAAGCATATTTAAA+AGG 0.120306 2.1:-10370899 MS.gene055788:CDS
TACAAGTTGAAATGAAAATT+TGG 0.225776 2.1:-10373966 MS.gene055788:CDS
TCTGAAGAAAACGAGGAAAA+TGG 0.308264 2.1:-10372034 MS.gene055788:CDS
GCACAATGTGTGCGGCAAGC+AGG 0.325018 2.1:+10372711 None:intergenic
TCATCTCATGTTCGTTTCTC+TGG 0.325095 2.1:-10371536 MS.gene055788:CDS
TAAGAAAACAAGAACTGTTA+TGG 0.327255 2.1:-10372949 MS.gene055788:CDS
GAGAAAATCGAGGAGCTTCT+AGG 0.334537 2.1:-10371856 MS.gene055788:CDS
TTGGATATAGAGTAGCAATA+AGG 0.342425 2.1:+10372649 None:intergenic
AAATGAAAATTTGGCATGTC+TGG 0.342620 2.1:-10373957 MS.gene055788:CDS
CATATTTAAAAGGGGCCATT+TGG 0.343398 2.1:-10370889 MS.gene055788:intron
AAACATTGACCTGCTTATTT+CGG 0.344036 2.1:+10372470 None:intergenic
CAAAAGCTAGAAAGCTTACT+TGG 0.360216 2.1:-10371826 MS.gene055788:CDS
GTTGAGATACTGGCAGTTAA+AGG 0.360477 2.1:-10371059 MS.gene055788:CDS
GCAATAAGGGCATCGTAGTT+TGG 0.366494 2.1:+10372663 None:intergenic
ATCCAAAAGCATATTTAAAA+GGG 0.378293 2.1:-10370898 MS.gene055788:CDS
TTTCGGAGTAACACAAGATA+TGG 0.404440 2.1:-10371791 MS.gene055788:CDS
TGGATATAGAGTAGCAATAA+GGG 0.426431 2.1:+10372650 None:intergenic
TGGAAGCATAGAAAGTGATA+TGG 0.432789 2.1:-10371888 MS.gene055788:CDS
AATGAAAGAGACTCATCTTC+CGG 0.441228 2.1:-10372007 MS.gene055788:CDS
AATGATTATGAACATGTTAA+CGG 0.443349 2.1:-10373989 MS.gene055788:CDS
CTTTCTATGCTTCCACCATC+AGG 0.449616 2.1:+10371896 None:intergenic
AGTTGAAGAAGTTGAGATAC+TGG 0.455290 2.1:-10371069 MS.gene055788:CDS
ATCCTTGAATATCACTAGCT+TGG 0.455511 2.1:+10372056 None:intergenic
ACGAGGATCTCACTTCATAA+AGG 0.459351 2.1:+10371446 None:intergenic
CTCTCAGCCCTCATCGTCAA+TGG 0.465700 2.1:-10371924 MS.gene055788:CDS
TATTGAGAAGTATGAGGAAG+AGG 0.469487 2.1:-10372625 MS.gene055788:intron
ACAAGATATGGCAGTGGTGG+TGG 0.479840 2.1:-10371779 MS.gene055788:CDS
AGAAAGCTTACTTGGGGAAG+GGG 0.485877 2.1:-10371818 MS.gene055788:CDS
TCCAAATATTGAGAAGTATG+AGG 0.490054 2.1:-10372631 MS.gene055788:CDS
CAAAGAAACTACACCAAGGC+TGG 0.492616 2.1:-10371512 MS.gene055788:CDS
CATTGACAAATCAATGCGAC+TGG 0.495504 2.1:-10372898 MS.gene055788:CDS
AGGTTCTTGACAGACACATT+TGG 0.497021 2.1:+10371466 None:intergenic
CACAATGTGTGCGGCAAGCA+GGG 0.500661 2.1:+10372712 None:intergenic
GACTCATCTTCCGGTGATGA+GGG 0.508584 2.1:-10371998 MS.gene055788:CDS
CCTAGACATTCGACCACTAC+GGG 0.509009 2.1:+10371739 None:intergenic
AACCAAGCTAGTGATATTCA+AGG 0.512189 2.1:-10372058 MS.gene055788:CDS
GTCCAATGTCCAATTTGCCT+TGG 0.513498 2.1:-10373817 MS.gene055788:intron
AGATGAAGCTTCTCCAGCCT+TGG 0.519875 2.1:+10371499 None:intergenic
AGCTGATGAGGATTCAGTCC+TGG 0.521897 2.1:-10371009 MS.gene055788:CDS
TTTCGATGAGCTATCATCGT+TGG 0.522619 2.1:-10370985 MS.gene055788:CDS
AAAAGCTAGAAAGCTTACTT+GGG 0.524304 2.1:-10371825 MS.gene055788:CDS
GGCAGTGGTGGTGGTAGCAA+CGG 0.528099 2.1:-10371770 MS.gene055788:CDS
GTCACAAATGAACTTGAACT+TGG 0.528949 2.1:+10372124 None:intergenic
GGGCTGAGAGGAGCGAACTC+TGG 0.529329 2.1:+10371937 None:intergenic
ATGATAGCTCATCGAAATCC+AGG 0.532453 2.1:+10370991 None:intergenic
GGAGAAGAACCGAAATAAGC+AGG 0.536321 2.1:-10372479 MS.gene055788:intron
ACCTAGACATTCGACCACTA+CGG 0.538677 2.1:+10371738 None:intergenic
CTCATCTTCCGGTGATGAGG+GGG 0.542483 2.1:-10371996 MS.gene055788:CDS
CCCGTAGTGGTCGAATGTCT+AGG 0.544547 2.1:-10371739 MS.gene055788:CDS
CTAGAAAGCTTACTTGGGGA+AGG 0.545363 2.1:-10371820 MS.gene055788:CDS
AGACTCATCTTCCGGTGATG+AGG 0.546223 2.1:-10371999 MS.gene055788:CDS
AAGCTTACTTGGGGAAGGGG+TGG 0.546390 2.1:-10371815 MS.gene055788:CDS
TCAACTTCTTCAACTGTCAA+AGG 0.556424 2.1:+10371077 None:intergenic
ATCAAAGAAACCTTCAGTCT+AGG 0.562587 2.1:-10372087 MS.gene055788:CDS
GGAGCTTGAATTTCGTGAAG+AGG 0.563934 2.1:-10372500 MS.gene055788:CDS
GATTCAAGCTTCAATAGCAA+AGG 0.564070 2.1:-10372194 MS.gene055788:CDS
TAGAAAGCTTACTTGGGGAA+GGG 0.564314 2.1:-10371819 MS.gene055788:CDS
AAATCGAGGAGCTTCTAGGC+TGG 0.565613 2.1:-10371852 MS.gene055788:CDS
CAATGCATTCCCTGCAAAAG+CGG 0.577701 2.1:+10372916 None:intergenic
TCGTCAATGGCAAGTCCTGA+TGG 0.582981 2.1:-10371911 MS.gene055788:CDS
TTGTGACAAGACAGCTGATG+AGG 0.583484 2.1:-10371021 MS.gene055788:CDS
GGACTTGCCATTGACGATGA+GGG 0.585871 2.1:+10371917 None:intergenic
GACGGCTAGCACAATGTGTG+CGG 0.610661 2.1:+10372703 None:intergenic
TACCAAGGCAAATTGGACAT+TGG 0.611122 2.1:+10373815 None:intergenic
TTCAGATTCTGGCATACAAG+AGG 0.611493 2.1:-10370599 MS.gene055788:intron
TCCAAAAGCATATTTAAAAG+GGG 0.611532 2.1:-10370897 MS.gene055788:CDS
AACACAAGATATGGCAGTGG+TGG 0.615387 2.1:-10371782 MS.gene055788:CDS
GATCATCTCTCAAGGAGCGA+CGG 0.617352 2.1:+10372685 None:intergenic
TAGTGGTCGAATGTCTAGGT+TGG 0.617463 2.1:-10371735 MS.gene055788:CDS
AGGACTTGCCATTGACGATG+AGG 0.621059 2.1:+10371916 None:intergenic
ATTGACAAATCAATGCGACT+GGG 0.624131 2.1:-10372897 MS.gene055788:CDS
GTAGTTTGGATCATCTCTCA+AGG 0.629290 2.1:+10372677 None:intergenic
GATTCTGGCATACAAGAGGA+AGG 0.641703 2.1:-10370595 MS.gene055788:CDS
ACTCATCTTCCGGTGATGAG+GGG 0.642493 2.1:-10371997 MS.gene055788:CDS
CATTGACGATGAGGGCTGAG+AGG 0.642573 2.1:+10371925 None:intergenic
AGTAACACAAGATATGGCAG+TGG 0.654930 2.1:-10371785 MS.gene055788:CDS
TTTGCAAGCTCATGAAACTG+TGG 0.659544 2.1:-10370931 MS.gene055788:CDS
TCAATGGCAAGTCCTGATGG+TGG 0.664275 2.1:-10371908 MS.gene055788:CDS
CTTGAATGAGAACACTGATG+AGG 0.666277 2.1:-10371696 MS.gene055788:intron
AACGGCAAGAGTTCCCGTAG+TGG 0.671350 2.1:-10371752 MS.gene055788:CDS
GCATACAAGAGGAAGGTGTG+AGG 0.682202 2.1:-10370588 None:intergenic
GATATAAATAGAGAAAATCG+AGG 0.683062 2.1:-10371866 MS.gene055788:CDS
TCAAGGATCTGAAGAAAACG+AGG 0.686356 2.1:-10372041 MS.gene055788:CDS
AAAGCTAGAAAGCTTACTTG+GGG 0.686965 2.1:-10371824 MS.gene055788:CDS
TCATCTTCCGGTGATGAGGG+GGG 0.693570 2.1:-10371995 MS.gene055788:CDS
TTGACAAATCAATGCGACTG+GGG 0.721274 2.1:-10372896 MS.gene055788:intron
TGGACAAAGAAACTACACCA+AGG 0.745241 2.1:-10371516 MS.gene055788:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATCATAAATAATAAATC+CGG + chr2.1:10371821-10371840 None:intergenic 10.0%
!! AAATGTTACTAATATTTAGT+TGG - chr2.1:10370895-10370914 MS.gene055788:CDS 15.0%
!! ATTAGATACAATAGAAAATA+TGG + chr2.1:10370957-10370976 None:intergenic 15.0%
!! ATTGAAAGAACAATTTAATA+TGG + chr2.1:10370660-10370679 None:intergenic 15.0%
!! TGTCAATTATATTTATAACA+AGG - chr2.1:10371066-10371085 MS.gene055788:CDS 15.0%
!! TTATAAGATATGTATTTAGT+TGG + chr2.1:10372264-10372283 None:intergenic 15.0%
!! TTGAAAGAACAATTTAATAT+GGG + chr2.1:10370659-10370678 None:intergenic 15.0%
!!! AATATATTAACAAAGCATTT+TGG + chr2.1:10373351-10373370 None:intergenic 15.0%
!!! ATTATACAATTGTTTTCAAT+GGG + chr2.1:10373392-10373411 None:intergenic 15.0%
!!! TAATAAAATTTGAAATTGCA+TGG + chr2.1:10371502-10371521 None:intergenic 15.0%
!!! TATTATACAATTGTTTTCAA+TGG + chr2.1:10373393-10373412 None:intergenic 15.0%
!!! TTTTCTCAAATTTATTATCA+TGG + chr2.1:10373781-10373800 None:intergenic 15.0%
!! GATAAGATTCAAGATTAATA+AGG + chr2.1:10372312-10372331 None:intergenic 20.0%
!! TATGATATATATATCATCTC+AGG - chr2.1:10371832-10371851 MS.gene055788:CDS 20.0%
!!! ATCCAAAAGCATATTTAAAA+GGG - chr2.1:10373680-10373699 MS.gene055788:intron 20.0%
!!! ATTGTGAATACTGATTTAAA+AGG - chr2.1:10371323-10371342 MS.gene055788:intron 20.0%
!!! ATTTTCGTAGTATACTTAAT+TGG - chr2.1:10371095-10371114 MS.gene055788:CDS 20.0%
!!! TACAAGTTGAAATGAAAATT+TGG - chr2.1:10370612-10370631 MS.gene055788:intron 20.0%
!!! TTATACAATTGTTTTCAATG+GGG + chr2.1:10373391-10373410 None:intergenic 20.0%
!!! TTTCTTTTATCACTTATTTC+TGG - chr2.1:10373155-10373174 MS.gene055788:intron 20.0%
!!! TTTTTTTCTTCTTTCTTTTC+TGG - chr2.1:10372359-10372378 MS.gene055788:intron 20.0%
! AAATCTTAATACTCACCAAA+TGG + chr2.1:10373707-10373726 None:intergenic 25.0%
! AAATGTAATCACATGTGTTA+TGG - chr2.1:10373811-10373830 MS.gene055788:intron 25.0%
! ACTTTGTCCTAATATATACA+CGG - chr2.1:10371996-10372015 MS.gene055788:CDS 25.0%
! AGCGGCATATTAAATAAATA+AGG + chr2.1:10371729-10371748 None:intergenic 25.0%
! ATAAGTGATAAAAGAAAACG+AGG + chr2.1:10373152-10373171 None:intergenic 25.0%
! ATAGAAAATATGGAACTAAG+AGG + chr2.1:10370947-10370966 None:intergenic 25.0%
! GATATAAATAGAGAAAATCG+AGG - chr2.1:10372712-10372731 MS.gene055788:CDS 25.0%
! GGCATATTAAATAAATAAGG+TGG + chr2.1:10371726-10371745 None:intergenic 25.0%
! TAAGAAAACAAGAACTGTTA+TGG - chr2.1:10371629-10371648 MS.gene055788:intron 25.0%
!! ATCTAAGATCATTTGTTACT+TGG - chr2.1:10371280-10371299 MS.gene055788:intron 25.0%
!! CAATAGCAAAGGTTTTTAAA+CGG - chr2.1:10372395-10372414 MS.gene055788:intron 25.0%
!! CACTAGCTAAATTTTACAAA+AGG + chr2.1:10372037-10372056 None:intergenic 25.0%
!! GATCCAAAAGCATATTTAAA+AGG - chr2.1:10373679-10373698 MS.gene055788:intron 25.0%
!! TACGTAGTAACATTTTTCAT+TGG + chr2.1:10372943-10372962 None:intergenic 25.0%
!! TCCAAAAGCATATTTAAAAG+GGG - chr2.1:10373681-10373700 MS.gene055788:intron 25.0%
!!! CTTCAAAAAACAAAGCATTT+TGG + chr2.1:10373323-10373342 None:intergenic 25.0%
AAAAACATACCAAGGCAAAT+TGG + chr2.1:10370773-10370792 None:intergenic 30.0%
AAAAGCTAGAAAGCTTACTT+GGG - chr2.1:10372753-10372772 MS.gene055788:intron 30.0%
AAACATTGACCTGCTTATTT+CGG + chr2.1:10372111-10372130 None:intergenic 30.0%
AAATGAAAATTTGGCATGTC+TGG - chr2.1:10370621-10370640 MS.gene055788:intron 30.0%
ACATCAATCAGTAAAACATG+TGG + chr2.1:10372205-10372224 None:intergenic 30.0%
ACCATAACCTACTTCATTAT+TGG - chr2.1:10370977-10370996 MS.gene055788:CDS 30.0%
AGACAAATGCTAAAAACAAC+AGG + chr2.1:10371465-10371484 None:intergenic 30.0%
CGAATTTCCAATAATGAAGT+AGG + chr2.1:10370987-10371006 None:intergenic 30.0%
GTAAGATAAGCATGAATACA+TGG + chr2.1:10371035-10371054 None:intergenic 30.0%
GTCCATTACAAGAGAAAAAA+AGG + chr2.1:10372921-10372940 None:intergenic 30.0%
TCCAATAATGAAGTAGGTTA+TGG + chr2.1:10370981-10371000 None:intergenic 30.0%
TCCTCATACTTCTCAATATT+TGG + chr2.1:10371951-10371970 None:intergenic 30.0%
TGGAAATTCGATCATATTGA+AGG - chr2.1:10370997-10371016 MS.gene055788:CDS 30.0%
TGGATATAGAGTAGCAATAA+GGG + chr2.1:10371931-10371950 None:intergenic 30.0%
TGTGAACTCGTTTCTATAAA+CGG - chr2.1:10371354-10371373 MS.gene055788:intron 30.0%
TTCAAACTGAGACTTATTCA+TGG + chr2.1:10371241-10371260 None:intergenic 30.0%
TTGGATATAGAGTAGCAATA+AGG + chr2.1:10371932-10371951 None:intergenic 30.0%
! ATTTCCAGTTCATCTTTTTG+TGG + chr2.1:10373627-10373646 None:intergenic 30.0%
! TAAGTTGTTGACTATCTACA+TGG - chr2.1:10372225-10372244 MS.gene055788:intron 30.0%
! TATTTTATTAGCACCAGATG+TGG - chr2.1:10371411-10371430 MS.gene055788:intron 30.0%
! TCCAAATATTGAGAAGTATG+AGG - chr2.1:10371947-10371966 MS.gene055788:CDS 30.0%
! TGTATTTAGTTGGTATGCTA+CGG + chr2.1:10372254-10372273 None:intergenic 30.0%
!! ATGTTTTTGTTCAACCTTTC+TGG - chr2.1:10370785-10370804 MS.gene055788:intron 30.0%
!! CAAAAAACAAAGCATTTTGG+TGG + chr2.1:10373320-10373339 None:intergenic 30.0%
!!! ATCTCTTTCGTTTTTTCTGT+CGG + chr2.1:10372618-10372637 None:intergenic 30.0%
!!! CTCCTTTTTTTCTCTTGTAA+TGG - chr2.1:10372916-10372935 MS.gene055788:CDS 30.0%
!!! TTTTCTGTTGTTTCAGATTC+TGG - chr2.1:10373968-10373987 MS.gene055788:CDS 30.0%
AAAGCTAGAAAGCTTACTTG+GGG - chr2.1:10372754-10372773 MS.gene055788:intron 35.0%
AACAGGACCGTGTATATATT+AGG + chr2.1:10372006-10372025 None:intergenic 35.0%
AACCAAGCTAGTGATATTCA+AGG - chr2.1:10372520-10372539 MS.gene055788:intron 35.0%
AATGAAAGAGACTCATCTTC+CGG - chr2.1:10372571-10372590 MS.gene055788:intron 35.0%
ACTATTACAGAGCTATCACT+AGG - chr2.1:10370920-10370939 MS.gene055788:CDS 35.0%
AGATAAGCAAAGTAGAGACA+AGG + chr2.1:10371770-10371789 None:intergenic 35.0%
AGATCCACAAAAAGATGAAC+TGG - chr2.1:10373620-10373639 MS.gene055788:intron 35.0%
AGTTGAAGAAGTTGAGATAC+TGG - chr2.1:10373509-10373528 MS.gene055788:intron 35.0%
ATAATTCAAGCATAAGCTGC+AGG + chr2.1:10371541-10371560 None:intergenic 35.0%
ATCAAAGAAACCTTCAGTCT+AGG - chr2.1:10372491-10372510 MS.gene055788:CDS 35.0%
ATCCTTGAATATCACTAGCT+TGG + chr2.1:10372525-10372544 None:intergenic 35.0%
ATGTAATGTCTGTATGTGAC+CGG - chr2.1:10371799-10371818 MS.gene055788:CDS 35.0%
ATTGACAAATCAATGCGACT+GGG - chr2.1:10371681-10371700 MS.gene055788:intron 35.0%
CAAAAGCTAGAAAGCTTACT+TGG - chr2.1:10372752-10372771 MS.gene055788:intron 35.0%
CATATTTAAAAGGGGCCATT+TGG - chr2.1:10373689-10373708 MS.gene055788:intron 35.0%
CCATGTTTGTGCTTTATAGA+AGG + chr2.1:10373738-10373757 None:intergenic 35.0%
CCTTCTATAAAGCACAAACA+TGG - chr2.1:10373735-10373754 MS.gene055788:intron 35.0%
CGTAGTATACTTAATTGGTC+AGG - chr2.1:10371100-10371119 MS.gene055788:intron 35.0%
CTGTTCAAACACAAAATGCT+TGG + chr2.1:10371602-10371621 None:intergenic 35.0%
GACAGAAAAAACGAAAGAGA+TGG - chr2.1:10372617-10372636 MS.gene055788:intron 35.0%
GATTCAAGCTTCAATAGCAA+AGG - chr2.1:10372384-10372403 MS.gene055788:intron 35.0%
GGTTGAACAAAAACATACCA+AGG + chr2.1:10370781-10370800 None:intergenic 35.0%
GTCACAAATGAACTTGAACT+TGG + chr2.1:10372457-10372476 None:intergenic 35.0%
GTGAACTCGTTTCTATAAAC+GGG - chr2.1:10371355-10371374 MS.gene055788:intron 35.0%
TCAACTTCTTCAACTGTCAA+AGG + chr2.1:10373504-10373523 None:intergenic 35.0%
TCTGAAGAAAACGAGGAAAA+TGG - chr2.1:10372544-10372563 MS.gene055788:intron 35.0%
TGACATTTAACAACCACATC+TGG + chr2.1:10371427-10371446 None:intergenic 35.0%
TGCAGCTTATGCTTGAATTA+TGG - chr2.1:10371540-10371559 MS.gene055788:CDS 35.0%
TTTCGGAGTAACACAAGATA+TGG - chr2.1:10372787-10372806 MS.gene055788:intron 35.0%
! CAAGCATTTTGTGTTTGAAC+AGG - chr2.1:10371600-10371619 MS.gene055788:intron 35.0%
! GCCCCTTTTAAATATGCTTT+TGG + chr2.1:10373685-10373704 None:intergenic 35.0%
! TACAAAAGGTGCATGTAAAC+AGG + chr2.1:10372023-10372042 None:intergenic 35.0%
! TATTGAGAAGTATGAGGAAG+AGG - chr2.1:10371953-10371972 MS.gene055788:CDS 35.0%
! TGGAAGCATAGAAAGTGATA+TGG - chr2.1:10372690-10372709 MS.gene055788:CDS 35.0%
! TTTTGTTCAACCTTTCTGGA+TGG - chr2.1:10370789-10370808 MS.gene055788:intron 35.0%
!! AAAACAAAGCATTTTGGTGG+AGG + chr2.1:10373317-10373336 None:intergenic 35.0%
AACAACAGGCAATCACACTA+TGG + chr2.1:10371451-10371470 None:intergenic 40.0%
ACGAGGATCTCACTTCATAA+AGG + chr2.1:10373135-10373154 None:intergenic 40.0%
AGGTTCTTGACAGACACATT+TGG + chr2.1:10373115-10373134 None:intergenic 40.0%
AGTAACACAAGATATGGCAG+TGG - chr2.1:10372793-10372812 MS.gene055788:intron 40.0%
ATGATAGCTCATCGAAATCC+AGG + chr2.1:10373590-10373609 None:intergenic 40.0%
ATTAGGACAAAGTAGTGAGC+TGG + chr2.1:10371989-10372008 None:intergenic 40.0%
CATTGACAAATCAATGCGAC+TGG - chr2.1:10371680-10371699 MS.gene055788:intron 40.0%
CTCAACTATACCATCCAGAA+AGG + chr2.1:10370802-10370821 None:intergenic 40.0%
CTTGAATGAGAACACTGATG+AGG - chr2.1:10372882-10372901 MS.gene055788:intron 40.0%
GAAATTCAAGCTCCTGCAAT+GGG + chr2.1:10372072-10372091 None:intergenic 40.0%
GAGTTGAACTTGATATCCAG+AGG - chr2.1:10373207-10373226 MS.gene055788:intron 40.0%
GTAGTTTGGATCATCTCTCA+AGG + chr2.1:10371904-10371923 None:intergenic 40.0%
GTTGAGATACTGGCAGTTAA+AGG - chr2.1:10373519-10373538 MS.gene055788:intron 40.0%
TACCAAGGCAAATTGGACAT+TGG + chr2.1:10370766-10370785 None:intergenic 40.0%
TAGAAAGCTTACTTGGGGAA+GGG - chr2.1:10372759-10372778 MS.gene055788:intron 40.0%
TCAAGGATCTGAAGAAAACG+AGG - chr2.1:10372537-10372556 MS.gene055788:intron 40.0%
TCATCTCATGTTCGTTTCTC+TGG - chr2.1:10373042-10373061 MS.gene055788:intron 40.0%
TGGACAAAGAAACTACACCA+AGG - chr2.1:10373062-10373081 MS.gene055788:intron 40.0%
TTCAGATTCTGGCATACAAG+AGG - chr2.1:10373979-10373998 MS.gene055788:CDS 40.0%
TTGACAAATCAATGCGACTG+GGG - chr2.1:10371682-10371701 MS.gene055788:intron 40.0%
TTTCGATGAGCTATCATCGT+TGG - chr2.1:10373593-10373612 MS.gene055788:intron 40.0%
TTTGCAAGCTCATGAAACTG+TGG - chr2.1:10373647-10373666 MS.gene055788:intron 40.0%
! GACATGCTATTTGAATGACG+TGG - chr2.1:10371377-10371396 MS.gene055788:intron 40.0%
AACACAAGATATGGCAGTGG+TGG - chr2.1:10372796-10372815 MS.gene055788:intron 45.0%
ACCTAGACATTCGACCACTA+CGG + chr2.1:10372843-10372862 None:intergenic 45.0%
ACTTCAACTGCAACTGTCAG+CGG + chr2.1:10371747-10371766 None:intergenic 45.0%
AGAAAGCTTACTTGGGGAAG+GGG - chr2.1:10372760-10372779 MS.gene055788:intron 45.0%
CAAAGAAACTACACCAAGGC+TGG - chr2.1:10373066-10373085 MS.gene055788:intron 45.0%
CAATGCATTCCCTGCAAAAG+CGG + chr2.1:10371665-10371684 None:intergenic 45.0%
CGAAATTCAAGCTCCTGCAA+TGG + chr2.1:10372073-10372092 None:intergenic 45.0%
CTAGAAAGCTTACTTGGGGA+AGG - chr2.1:10372758-10372777 MS.gene055788:intron 45.0%
CTTTCTATGCTTCCACCATC+AGG + chr2.1:10372685-10372704 None:intergenic 45.0%
GAGAAAATCGAGGAGCTTCT+AGG - chr2.1:10372722-10372741 MS.gene055788:CDS 45.0%
GATTCTGGCATACAAGAGGA+AGG - chr2.1:10373983-10374002 MS.gene055788:CDS 45.0%
GGAGAAGAACCGAAATAAGC+AGG - chr2.1:10372099-10372118 MS.gene055788:CDS 45.0%
GGAGCTTGAATTTCGTGAAG+AGG - chr2.1:10372078-10372097 MS.gene055788:CDS 45.0%
GTCCAATGTCCAATTTGCCT+TGG - chr2.1:10370761-10370780 MS.gene055788:intron 45.0%
TAGTGGTCGAATGTCTAGGT+TGG - chr2.1:10372843-10372862 MS.gene055788:intron 45.0%
TGAGGTCTAGCATAAGTGGT+TGG + chr2.1:10373253-10373272 None:intergenic 45.0%
TTGTGACAAGACAGCTGATG+AGG - chr2.1:10373557-10373576 MS.gene055788:intron 45.0%
!! GCAATAAGGGCATCGTAGTT+TGG + chr2.1:10371918-10371937 None:intergenic 45.0%
!! GGTTTTGTCTCCTAGACTGA+AGG + chr2.1:10372504-10372523 None:intergenic 45.0%
AAATCGAGGAGCTTCTAGGC+TGG - chr2.1:10372726-10372745 MS.gene055788:CDS 50.0%
ACAAGATATGGCAGTGGTGG+TGG - chr2.1:10372799-10372818 MS.gene055788:intron 50.0%
ACTCATCTTCCGGTGATGAG+GGG - chr2.1:10372581-10372600 MS.gene055788:intron 50.0%
AGACTCATCTTCCGGTGATG+AGG - chr2.1:10372579-10372598 MS.gene055788:intron 50.0%
AGATGAAGCTTCTCCAGCCT+TGG + chr2.1:10373082-10373101 None:intergenic 50.0%
AGCTGATGAGGATTCAGTCC+TGG - chr2.1:10373569-10373588 MS.gene055788:intron 50.0%
AGGACTTGCCATTGACGATG+AGG + chr2.1:10372665-10372684 None:intergenic 50.0%
ATACCACTCTGTCCCATTGC+AGG - chr2.1:10372057-10372076 MS.gene055788:CDS 50.0%
CAGTGTGTGTTGTCAACCTC+TGG + chr2.1:10373226-10373245 None:intergenic 50.0%
CCACTGAGGTCTAGCATAAG+TGG + chr2.1:10373257-10373276 None:intergenic 50.0%
CCACTTATGCTAGACCTCAG+TGG - chr2.1:10373254-10373273 MS.gene055788:intron 50.0%
CCTAGACATTCGACCACTAC+GGG + chr2.1:10372842-10372861 None:intergenic 50.0%
GACTCATCTTCCGGTGATGA+GGG - chr2.1:10372580-10372599 MS.gene055788:intron 50.0%
GATCATCTCTCAAGGAGCGA+CGG + chr2.1:10371896-10371915 None:intergenic 50.0%
GGACTTGCCATTGACGATGA+GGG + chr2.1:10372664-10372683 None:intergenic 50.0%
GTAGACACGTCTTCGATCAG+AGG - chr2.1:10373837-10373856 MS.gene055788:CDS 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr2.1:10373893-10373912 None:intergenic 50.0%
TATGCTAGACCTCAGTGGTC+TGG - chr2.1:10373259-10373278 MS.gene055788:intron 50.0%
TCAATGGCAAGTCCTGATGG+TGG - chr2.1:10372670-10372689 MS.gene055788:CDS 50.0%
TCGTCAATGGCAAGTCCTGA+TGG - chr2.1:10372667-10372686 MS.gene055788:CDS 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr2.1:10373892-10373911 None:intergenic 50.0%
!! AATGCTTGCACCGCTTTTGC+AGG - chr2.1:10371652-10371671 MS.gene055788:intron 50.0%
!! ATGCTTGCACCGCTTTTGCA+GGG - chr2.1:10371653-10371672 MS.gene055788:intron 50.0%
AACGGCAAGAGTTCCCGTAG+TGG - chr2.1:10372826-10372845 MS.gene055788:intron 55.0%
AAGCTTACTTGGGGAAGGGG+TGG - chr2.1:10372763-10372782 MS.gene055788:intron 55.0%
CACAATGTGTGCGGCAAGCA+GGG + chr2.1:10371869-10371888 None:intergenic 55.0%
CATTGACGATGAGGGCTGAG+AGG + chr2.1:10372656-10372675 None:intergenic 55.0%
CCCGTAGTGGTCGAATGTCT+AGG - chr2.1:10372839-10372858 MS.gene055788:intron 55.0%
CTCATCTTCCGGTGATGAGG+GGG - chr2.1:10372582-10372601 MS.gene055788:intron 55.0%
CTCTCAGCCCTCATCGTCAA+TGG - chr2.1:10372654-10372673 MS.gene055788:CDS 55.0%
GACGGCTAGCACAATGTGTG+CGG + chr2.1:10371878-10371897 None:intergenic 55.0%
GTGTGTGTGTGTGTGTGGGT+GGG + chr2.1:10373889-10373908 None:intergenic 55.0%
TCATCTTCCGGTGATGAGGG+GGG - chr2.1:10372583-10372602 MS.gene055788:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+TGG + chr2.1:10373890-10373909 None:intergenic 55.0%
TTCTGTACCCCCCTCATCAC+CGG + chr2.1:10372593-10372612 None:intergenic 55.0%
! CTTGGGGAAGGGGTGGTTTT+CGG - chr2.1:10372770-10372789 MS.gene055788:intron 55.0%
CTCAGTGGTCTGGCAGTGAC+AGG - chr2.1:10373269-10373288 MS.gene055788:intron 60.0%
CTGTCACTGCCAGACCACTG+AGG + chr2.1:10373271-10373290 None:intergenic 60.0%
GCACAATGTGTGCGGCAAGC+AGG + chr2.1:10371870-10371889 None:intergenic 60.0%
GCTCCTGCAATGGGACAGAG+TGG + chr2.1:10372063-10372082 None:intergenic 60.0%
GTGTGTGTGTGTGGGTGGGT+GGG + chr2.1:10373885-10373904 None:intergenic 60.0%
TGTGTGTGTGTGTGGGTGGG+TGG + chr2.1:10373886-10373905 None:intergenic 60.0%
!! GGCAGTGGTGGTGGTAGCAA+CGG - chr2.1:10372808-10372827 MS.gene055788:intron 60.0%
GGGCTGAGAGGAGCGAACTC+TGG + chr2.1:10372644-10372663 None:intergenic 65.0%
GTGTGTGTGGGTGGGTGGGT+GGG + chr2.1:10373881-10373900 None:intergenic 65.0%
TGTGTGTGTGGGTGGGTGGG+TGG + chr2.1:10373882-10373901 None:intergenic 65.0%
GTGTGGGTGGGTGGGTGGGT+GGG + chr2.1:10373877-10373896 None:intergenic 70.0%
TGTGGGTGGGTGGGTGGGTG+GGG + chr2.1:10373876-10373895 None:intergenic 70.0%
TGTGTGGGTGGGTGGGTGGG+TGG + chr2.1:10373878-10373897 None:intergenic 70.0%
GTGGGTGGGTGGGTGGGTGG+GGG + chr2.1:10373875-10373894 None:intergenic 75.0%
TGGGTGGGTGGGTGGGGGGA+GGG + chr2.1:10373870-10373889 None:intergenic 75.0%
TGGGTGGGTGGGTGGGTGGG+GGG + chr2.1:10373874-10373893 None:intergenic 75.0%
! GTGGGTGGGTGGGTGGGGGG+AGG + chr2.1:10373871-10373890 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10370590 10374010 10370590 ID=MS.gene055788
chr2.1 mRNA 10370590 10374010 10370590 ID=MS.gene055788.t1;Parent=MS.gene055788
chr2.1 exon 10373955 10374010 10373955 ID=MS.gene055788.t1.exon1;Parent=MS.gene055788.t1
chr2.1 CDS 10373955 10374010 10373955 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10373818 10373876 10373818 ID=MS.gene055788.t1.exon2;Parent=MS.gene055788.t1
chr2.1 CDS 10373818 10373876 10373818 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10372897 10372978 10372897 ID=MS.gene055788.t1.exon3;Parent=MS.gene055788.t1
chr2.1 CDS 10372897 10372978 10372897 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10372626 10372746 10372626 ID=MS.gene055788.t1.exon4;Parent=MS.gene055788.t1
chr2.1 CDS 10372626 10372746 10372626 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10372480 10372521 10372480 ID=MS.gene055788.t1.exon5;Parent=MS.gene055788.t1
chr2.1 CDS 10372480 10372521 10372480 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10371697 10372215 10371697 ID=MS.gene055788.t1.exon6;Parent=MS.gene055788.t1
chr2.1 CDS 10371697 10372215 10371697 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10371459 10371566 10371459 ID=MS.gene055788.t1.exon7;Parent=MS.gene055788.t1
chr2.1 CDS 10371459 10371566 10371459 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10370890 10371117 10370890 ID=MS.gene055788.t1.exon8;Parent=MS.gene055788.t1
chr2.1 CDS 10370890 10371117 10370890 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
chr2.1 exon 10370590 10370616 10370590 ID=MS.gene055788.t1.exon9;Parent=MS.gene055788.t1
chr2.1 CDS 10370590 10370616 10370590 ID=cds.MS.gene055788.t1;Parent=MS.gene055788.t1
Gene Sequence

>MS.gene055788

ATGATTATGAACATGTTAACGGTACAAGTTGAAATGAAAATTTGGCATGTCTGGAAGTATGTTCATCCCATATTAAATTGTTCTTTCAATCGAGTTTATGTAAATATATGCTTATTTTCTTGTCTTTCTTGCAGATATGTGTACGTTGAACTTTCAGATATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATGTTTTTGTTCAACCTTTCTGGATGGTATAGTTGAGCAGTAACTTGTATGTGATTTTGATTTTGCTACAGTCAAAATGTTACTGATATTTAGTGATTTTGCTGCAGTCAAAATGTTACTAATATTTAGTTGGCGACTATTACAGAGCTATCACTAGGTCCTCTTAGTTCCATATTTTCTATTGTATCTAATACCATAACCTACTTCATTATTGGAAATTCGATCATATTGAAGGAATAGTACAGTTCCATGTATTCATGCTTATCTTACGAGCATCAAATTGTCAATTATATTTATAACAAGGATGCTAATTTTCGTAGTATACTTAATTGGTCAGGCTGTTAATATCACTGTATAGTCTGTATATCATAACAGTAGAATAAGTTCACTCATTAGAGTCTCATGAATGACTTTGATGAGTTAGATGCAACGATGAAATGTATCTGTATTTTGCCATGAATAAGTCTCAGTTTGAATAATCAATTTACTAGTTTAATCTAAGATCATTTGTTACTTGGAATACATACGATACTAAATGATTGTGAATACTGATTTAAAAGGTAAAAAATTGTGAACTCGTTTCTATAAACGGGACATGCTATTTGAATGACGTGGAAAGTTTCAAATATTTTATTAGCACCAGATGTGGTTGTTAAATGTCAACCATAGTGTGATTGCCTGTTGTTTTTAGCATTTGTCTTAATTGTGATTCTTCCATGCAATTTCAAATTTTATTATAATTTTTTTTTCAAACCTGCAGCTTATGCTTGAATTATGGCAAACATTTTCTGAATGCTGATTTCTCGAAGACTGACCAAGCATTTTGTGTTTGAACAGGTATTATTAAGAAAACAAGAACTGTTATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGGTAAGTCACATGAATCATTCCACCTTATTTATTTAATATGCCGCTGACAGTTGCAGTTGAAGTCCTTGTCTCTACTTTGCTTATCTGAAATCACAATGTAATGTCTGTATGTGACCGGATTTATTATTTATGATATATATATCATCTCAGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCTAGCCGTCGCTCCTTGAGAGATGATCCAAACTACGATGCCCTTATTGCTACTCTATATCCAAATATTGAGAAGTATGAGGAAGAGGTATAATTTAACCAGCTCACTACTTTGTCCTAATATATACACGGTCCTGTTTACATGCACCTTTTGTAAAATTTAGCTAGTGATACCACTCTGTCCCATTGCAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGAAATAAGCAGGTCAATGTTTATTGAGTGAACATATTTATGCATGCTTTCAGCTTAATTATTGTAATGTGCATGCAAATTACACTGATGATACCACATGTTTTACTGATTGATGTTAAGTTGTTGACTATCTACATGGCTGCCGTAGCATACCAACTAAATACATATCTTATAAAATGAATATTTGTTTAACGCATGTTCCTTATTAATCTTGAATCTTATCAGTCATTATCAATGTTATCTTAGTGTTTTTTTTTCTTCTTTCTTTTCTGGCAGATTCAAGCTTCAATAGCAAAGGTTTTTAAACGGCAATCTGAAGCACTAAGCAAGAAACGTAAAGATACACCAAGTTCAAGTTCATTTGTGACAAGATCACAGCGTAATCAAAGAAACCTTCAGTCTAGGAGACAAAACCAAGCTAGTGATATTCAAGGATCTGAAGAAAACGAGGAAAATGGAAATAATGAAAGAGACTCATCTTCCGGTGATGAGGGGGGTACAGAACTCCGACAGAAAAAACGAAAGAGATGGACCAGAGTTCGCTCCTCTCAGCCCTCATCGTCAATGGCAAGTCCTGATGGTGGAAGCATAGAAAGTGATATGGATATAAATAGAGAAAATCGAGGAGCTTCTAGGCTGGTGACAAAAGCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTCGGAGTAACACAAGATATGGCAGTGGTGGTGGTAGCAACGGCAAGAGTTCCCGTAGTGGTCGAATGTCTAGGTTGGTTGATTATCTCAAAAACTTGAATGAGAACACTGATGAGGTATAAGTTATTCTCCTTTTTTTCTCTTGTAATGGACCAATGAAAAATGTTACTACGTATTGCTTCTTTATTATACTTGTATTCTTATTTCAGTTCAATTTAACAAATAGATACTATATTTTATTTACAGTTTGATGTTCATCTCATGTTCGTTTCTCTGGACAAAGAAACTACACCAAGGCTGGAGAAGCTTCATCTGTGTTGTCGACCAAATGTGTCTGTCAAGAACCTTTATGAAGTGAGATCCTCGTTTTCTTTTATCACTTATTTCTGGCAGTGATAGTTTTTTTTTTTAATTAGTATGAGTTGAACTTGATATCCAGAGGTTGACAACACACACTGCGCACCAACCACTTATGCTAGACCTCAGTGGTCTGGCAGTGACAGGTTTTGATCAACTTGAATTTATGCCTCCACCAAAATGCTTTGTTTTTTGAAGAAGCACCAAAATGCTTTGTTAATATATTAGCACTGTGTAATTCTTCCCCATTGAAAACAATTGTATAATATGCTTTTTTTGACGAACTGATGACAGTTTTCTTATGATAATTGTCTGATATTTTTGTATTTTCTTCATAGTATGTTGCTAGTCAGACTCCTTTGACAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTGCAAATTGTGACAAGACAGCTGATGAGGATTCAGTCCTGGATTTCGATGAGCTATCATCGTTGGTTATAGATCCACAAAAAGATGAACTGGAAATTTTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAAAGCATATTTAAAAGGGGCCATTTGGTGAGTATTAAGATTTTTTTTTTTCCTTCTATAAAGCACAAACATGGACACAACATTGACACGTTAACCATGATAATAAATTTGAGAAAATTAATTAATTAAATGTAATCACATGTGTTATGGACTGTAGACACGTCTTCGATCAGAGGTCTCGCACCCTCCCCCCACCCACCCACCCACCCACACACACACACACACACACACACACACACAAGTATTATCAAGTAAATGCTAAACTATATATATTTATTTTTTGTTTTTCTGTTGTTTCAGATTCTGGCATACAAGAGGAAGGTGTGA
Protein sequence

>MS.gene055788.t1

MIMNMLTVQVEMKIWHVWKYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQSEALSKKRKDTPSSSSFVTRSQRNQRNLQSRRQNQASDIQGSEENEENGNNERDSSSGDEGGTELRQKKRKRWTRVRSSQPSSSMASPDGGSIESDMDINRENRGASRLVTKARKLTWGRGGFRSNTRYGSGGGSNGKSSRSGRMSRLVDYLKNLNENTDEFDVHLMFVSLDKETTPRLEKLHLCCRPNVSVKNLYEYVASQTPLTVEEVEILAVKGCSSANCDKTADEDSVLDFDELSSLVIDPQKDELEILQAHETVAEIRSKSIFKRGHLILAYKRKV