Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05583.t1 | XP_013460192.1 | 94.3 | 389 | 21 | 1 | 1 | 388 | 1 | 389 | 1.70E-201 | 711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05583.t1 | G7ZYI5 | 94.3 | 389 | 21 | 1 | 1 | 388 | 1 | 389 | 1.2e-201 | 711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene05583.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05583 | MS.gene074399 | 0.829229 | 5.79E-55 | -1.69E-46 |
| MS.gene05583 | MS.gene25904 | 0.819821 | 9.50E-53 | -1.69E-46 |
| MS.gene05583 | MS.gene25906 | 0.821779 | 3.37E-53 | -1.69E-46 |
| MS.gene05583 | MS.gene70580 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene05583 | MS.gene72543 | 0.828491 | 8.73E-55 | -1.69E-46 |
| MS.gene05583 | MS.gene90984 | 0.809253 | 2.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05583.t1 | MTR_3g463270 | 97.686 | 389 | 8 | 1 | 1 | 388 | 1 | 389 | 0.0 | 788 |
| MS.gene05583.t1 | MTR_3g072920 | 49.393 | 247 | 110 | 10 | 146 | 386 | 212 | 449 | 8.21e-63 | 208 |
| MS.gene05583.t1 | MTR_1g024980 | 45.200 | 250 | 111 | 9 | 147 | 388 | 170 | 401 | 1.42e-58 | 196 |
| MS.gene05583.t1 | MTR_4g081420 | 44.583 | 240 | 116 | 8 | 153 | 385 | 205 | 434 | 1.06e-55 | 189 |
| MS.gene05583.t1 | MTR_2g010860 | 35.472 | 265 | 152 | 6 | 132 | 386 | 120 | 375 | 1.12e-42 | 153 |
| MS.gene05583.t1 | MTR_2g010870 | 35.766 | 274 | 146 | 8 | 133 | 386 | 91 | 354 | 4.44e-41 | 149 |
| MS.gene05583.t1 | MTR_5g012220 | 37.615 | 218 | 100 | 7 | 175 | 388 | 105 | 290 | 5.42e-30 | 117 |
| MS.gene05583.t1 | MTR_4g101450 | 36.620 | 213 | 98 | 7 | 178 | 388 | 98 | 275 | 8.88e-29 | 113 |
| MS.gene05583.t1 | MTR_5g094440 | 31.224 | 237 | 128 | 10 | 159 | 387 | 61 | 270 | 2.79e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05583.t1 | AT2G29660 | 55.319 | 329 | 122 | 8 | 73 | 388 | 57 | 373 | 3.22e-110 | 328 |
| MS.gene05583.t1 | AT4G27240 | 41.577 | 279 | 137 | 8 | 115 | 385 | 168 | 428 | 5.04e-57 | 192 |
| MS.gene05583.t1 | AT5G54630 | 41.791 | 268 | 123 | 9 | 133 | 385 | 220 | 469 | 6.72e-57 | 193 |
| MS.gene05583.t1 | AT1G75710 | 42.391 | 276 | 115 | 10 | 144 | 388 | 197 | 459 | 5.02e-56 | 191 |
| MS.gene05583.t1 | AT4G27240 | 40.873 | 252 | 125 | 7 | 115 | 357 | 168 | 404 | 8.32e-48 | 168 |
| MS.gene05583.t1 | AT1G11490 | 35.223 | 247 | 141 | 8 | 150 | 386 | 126 | 363 | 1.12e-34 | 131 |
| MS.gene05583.t1 | AT1G11490 | 35.223 | 247 | 141 | 8 | 150 | 386 | 126 | 363 | 1.12e-34 | 131 |
| MS.gene05583.t1 | AT4G22560 | 34.025 | 241 | 110 | 10 | 153 | 388 | 68 | 264 | 4.40e-27 | 108 |
| MS.gene05583.t1 | AT1G62520 | 32.710 | 214 | 110 | 6 | 176 | 388 | 100 | 280 | 2.45e-22 | 96.3 |
| MS.gene05583.t1 | AT4G12450 | 29.643 | 280 | 130 | 9 | 118 | 388 | 56 | 277 | 6.78e-22 | 94.7 |
Find 110 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGAGGAGGTTTGGTTTC+TGG | 0.131791 | 3.2:-53997600 | None:intergenic |
| ATAAAACTCTTTCTTCTTCT+TGG | 0.198943 | 3.2:+53997317 | MS.gene05583:CDS |
| TTTGGAAAGGTGTTTGTTTC+GGG | 0.204440 | 3.2:-53997712 | None:intergenic |
| TCTGGCTGTTATGGATCTTC+AGG | 0.257483 | 3.2:-53997747 | None:intergenic |
| GTTTGGAAAGGTGTTTGTTT+CGG | 0.299301 | 3.2:-53997713 | None:intergenic |
| GGTGAAGAGGGTTGTGATAA+AGG | 0.305338 | 3.2:-53997271 | None:intergenic |
| ATTTGTGGAATTATTAAATC+AGG | 0.319183 | 3.2:+53997958 | MS.gene05583:CDS |
| TCGTGAAACGGTGAAGATTA+AGG | 0.337404 | 3.2:+53997795 | MS.gene05583:CDS |
| TTCAGGATTCGGTGTATGTT+TGG | 0.343136 | 3.2:-53997730 | None:intergenic |
| TGATGATTGGGTGGTGGGAG+TGG | 0.349559 | 3.2:-53997389 | None:intergenic |
| TTATGTGAGTTGGGACATAA+TGG | 0.359107 | 3.2:+53997901 | MS.gene05583:CDS |
| CACGCTGTATCGGAGCTTAT+CGG | 0.371706 | 3.2:+53997640 | MS.gene05583:CDS |
| GTGGAAATTCCATCTAATTT+CGG | 0.372427 | 3.2:-53997988 | None:intergenic |
| TGAGGTGATGATTGGGTGGT+GGG | 0.378568 | 3.2:-53997394 | None:intergenic |
| GCTTCTTCCGTGGTGGATCT+TGG | 0.378813 | 3.2:-53997489 | None:intergenic |
| CACACAATCCCTTATCTCAT+TGG | 0.399784 | 3.2:+53997447 | MS.gene05583:CDS |
| CGTGCAAATCATCTTCAAAT+CGG | 0.400591 | 3.2:+53997684 | MS.gene05583:CDS |
| TATGTGAGTTGGGACATAAT+GGG | 0.407982 | 3.2:+53997902 | MS.gene05583:CDS |
| CGTGGTGGATCTTGGAAACT+CGG | 0.409415 | 3.2:-53997481 | None:intergenic |
| GGGTTGGGTTGGGTCAGATT+TGG | 0.409725 | 3.2:+53998116 | MS.gene05583:CDS |
| CGTGTTATCGCGGGTTGGGT+TGG | 0.411173 | 3.2:+53998105 | MS.gene05583:CDS |
| GTGTTATCGCGGGTTGGGTT+GGG | 0.422250 | 3.2:+53998106 | MS.gene05583:CDS |
| TGTTATGGATCTTCAGGATT+CGG | 0.422603 | 3.2:-53997741 | None:intergenic |
| TTGTCGTGTTATCGCGGGTT+GGG | 0.424646 | 3.2:+53998101 | MS.gene05583:CDS |
| TGGTGATTCTCGAGGAGGTT+TGG | 0.425015 | 3.2:-53997607 | None:intergenic |
| TCCGGCGGTCGCGGCGGCGA+CGG | 0.425018 | 3.2:-53997200 | None:intergenic |
| AACTCCCGCTCGATGTCATC+AGG | 0.433180 | 3.2:-53998045 | None:intergenic |
| CTGAGGTGATGATTGGGTGG+TGG | 0.435680 | 3.2:-53997395 | None:intergenic |
| CTCCGATACAGCGTGGTTTG+CGG | 0.437651 | 3.2:-53997632 | None:intergenic |
| TGGTGGACTGAGGTGATGAT+TGG | 0.454282 | 3.2:-53997402 | None:intergenic |
| TTAGGATGAGAAGGTGAAGA+GGG | 0.455923 | 3.2:-53997283 | None:intergenic |
| GGATCTTGGAAACTCGGGTC+GGG | 0.459370 | 3.2:-53997475 | None:intergenic |
| TTAAGTTCATGAACGTCAAA+CGG | 0.460337 | 3.2:+53998067 | MS.gene05583:CDS |
| TTTCCACGCTGTCGACTAGC+TGG | 0.463808 | 3.2:+53998004 | MS.gene05583:CDS |
| ATCTCGCCGCACGCGGTACA+TGG | 0.464952 | 3.2:-53997574 | None:intergenic |
| CGGGTTGAACCAATGAGATA+AGG | 0.467937 | 3.2:-53997456 | None:intergenic |
| CTCGTTTGTCGTGTTATCGC+GGG | 0.470304 | 3.2:+53998096 | MS.gene05583:CDS |
| TTGATCCTCATTGTCCACCT+TGG | 0.471213 | 3.2:+53997163 | MS.gene05583:CDS |
| AGGGAAGAAGAGGTTGTTAT+CGG | 0.474066 | 3.2:-53997533 | None:intergenic |
| TGATTGGGTGGTGGGAGTGG+TGG | 0.477345 | 3.2:-53997386 | None:intergenic |
| TAAGTTCATGAACGTCAAAC+GGG | 0.478847 | 3.2:+53998068 | MS.gene05583:CDS |
| ACCGTCGCCGCCGCGACCGC+CGG | 0.483078 | 3.2:+53997199 | MS.gene05583:CDS |
| GGTGGACTGAGGTGATGATT+GGG | 0.493956 | 3.2:-53997401 | None:intergenic |
| GCTCGTTTGTCGTGTTATCG+CGG | 0.495918 | 3.2:+53998095 | MS.gene05583:CDS |
| GGATTTCACGGTGGTTGTAA+TGG | 0.497896 | 3.2:-53997422 | None:intergenic |
| GGATTGTGTGGAGGATTTCA+CGG | 0.500268 | 3.2:-53997434 | None:intergenic |
| TTTGTCGTGTTATCGCGGGT+TGG | 0.507963 | 3.2:+53998100 | MS.gene05583:CDS |
| ATGTGAGTTGGGACATAATG+GGG | 0.510178 | 3.2:+53997903 | MS.gene05583:CDS |
| TCTTTGATGGTAATAGTTGA+CGG | 0.511623 | 3.2:-53997234 | None:intergenic |
| GTGCAAATCATCTTCAAATC+GGG | 0.511628 | 3.2:+53997685 | MS.gene05583:CDS |
| ATCGGCGGAGATATCTGATT+CGG | 0.513214 | 3.2:-53997515 | None:intergenic |
| ATACAGCGTGGTTTGCGGAT+TGG | 0.514347 | 3.2:-53997627 | None:intergenic |
| AAGACTTGATGAGGAGGAGT+TGG | 0.519786 | 3.2:+53998209 | MS.gene05583:CDS |
| GGGTTGAACCAATGAGATAA+GGG | 0.524136 | 3.2:-53997455 | None:intergenic |
| TTTAGGATGAGAAGGTGAAG+AGG | 0.528013 | 3.2:-53997284 | None:intergenic |
| GATTCGGATTGCTTCTTCCG+TGG | 0.537688 | 3.2:-53997499 | None:intergenic |
| ATCCGCAAACCACGCTGTAT+CGG | 0.538075 | 3.2:+53997630 | MS.gene05583:CDS |
| TCGGATTGCTTCTTCCGTGG+TGG | 0.549628 | 3.2:-53997496 | None:intergenic |
| TGGATCTTGGAAACTCGGGT+CGG | 0.550081 | 3.2:-53997476 | None:intergenic |
| GAAAGATATCATTGCGGAGA+GGG | 0.550984 | 3.2:-53997552 | None:intergenic |
| GTGATGGCGCGCGGCGAGAG+TGG | 0.551447 | 3.2:+53998177 | MS.gene05583:CDS |
| GGAGCTTATCGGATCCGACC+CGG | 0.553645 | 3.2:+53997651 | MS.gene05583:CDS |
| CGGATTGGTGATTCTCGAGG+AGG | 0.553761 | 3.2:-53997612 | None:intergenic |
| CGGTGAACATGAAGCATCCA+AGG | 0.563804 | 3.2:-53997180 | None:intergenic |
| CACGATGTTATGACCCGGGT+CGG | 0.569362 | 3.2:-53997665 | None:intergenic |
| GTCAGATTTGGACGATGAGG+TGG | 0.571954 | 3.2:+53998128 | MS.gene05583:CDS |
| CACCGAATCAAAACCTCCAT+CGG | 0.572913 | 3.2:-53998157 | None:intergenic |
| TTTGATTCGGTGATGGCGCG+CGG | 0.573221 | 3.2:+53998168 | MS.gene05583:CDS |
| ATTCGAAGAATATCGTGAAA+CGG | 0.573251 | 3.2:+53997783 | MS.gene05583:CDS |
| GGACTGAGGTGATGATTGGG+TGG | 0.579372 | 3.2:-53997398 | None:intergenic |
| TTGCGGATTGGTGATTCTCG+AGG | 0.581119 | 3.2:-53997615 | None:intergenic |
| CAATGAGATAAGGGATTGTG+TGG | 0.586623 | 3.2:-53997446 | None:intergenic |
| AAGCAAGGAAGAACAGCCCT+AGG | 0.591167 | 3.2:-53998243 | None:intergenic |
| GATTCGGTGTATGTTTGGAA+AGG | 0.592940 | 3.2:-53997725 | None:intergenic |
| ATTTGCACGATGTTATGACC+CGG | 0.595622 | 3.2:-53997670 | None:intergenic |
| GGAAAGATATCATTGCGGAG+AGG | 0.602436 | 3.2:-53997553 | None:intergenic |
| CCACGCTGTCGACTAGCTGG+AGG | 0.602472 | 3.2:+53998007 | MS.gene05583:CDS |
| CACGCTGTCGACTAGCTGGA+GGG | 0.602474 | 3.2:+53998008 | MS.gene05583:CDS |
| AGCATCCAAGGTGGACAATG+AGG | 0.604755 | 3.2:-53997168 | None:intergenic |
| GTGGTGGATCTTGGAAACTC+GGG | 0.605730 | 3.2:-53997480 | None:intergenic |
| ATCTTTCCATGTACCGCGTG+CGG | 0.605910 | 3.2:+53997568 | MS.gene05583:CDS |
| CATTGCGGAGAGGGAAGAAG+AGG | 0.607506 | 3.2:-53997543 | None:intergenic |
| CTATACACAATCACAAAGCA+AGG | 0.609481 | 3.2:-53998258 | None:intergenic |
| GACGAACGCTGTATCGCTGA+CGG | 0.610612 | 3.2:+53997844 | MS.gene05583:CDS |
| AATTCCTGATGACATCGAGC+GGG | 0.613181 | 3.2:+53998041 | MS.gene05583:CDS |
| GAGCTTATCGGATCCGACCC+GGG | 0.613363 | 3.2:+53997652 | MS.gene05583:CDS |
| GATATTCTTCGAATTTCGAG+AGG | 0.614943 | 3.2:-53997774 | None:intergenic |
| GATGAGGTGGATAAAACCGA+TGG | 0.619255 | 3.2:+53998141 | MS.gene05583:CDS |
| CAGCGATACAGCGTTCGTCA+CGG | 0.619651 | 3.2:-53997840 | None:intergenic |
| CTGGAAAATCTCGCCGCACG+CGG | 0.619894 | 3.2:-53997581 | None:intergenic |
| TTTCACGGTGGTTGTAATGG+TGG | 0.623016 | 3.2:-53997419 | None:intergenic |
| AAATCATCTTCAAATCGGGT+TGG | 0.627452 | 3.2:+53997689 | MS.gene05583:CDS |
| TGTTTACACAAGACTTGATG+AGG | 0.640225 | 3.2:+53998200 | MS.gene05583:CDS |
| CAATTCCTGATGACATCGAG+CGG | 0.650943 | 3.2:+53998040 | MS.gene05583:CDS |
| GTGAAGATTAAGGCGGCGCG+TGG | 0.651154 | 3.2:+53997805 | MS.gene05583:CDS |
| TGAGATAAGGGATTGTGTGG+AGG | 0.659180 | 3.2:-53997443 | None:intergenic |
| TTTGCACGATGTTATGACCC+GGG | 0.659427 | 3.2:-53997669 | None:intergenic |
| TGGGTCAGATTTGGACGATG+AGG | 0.659548 | 3.2:+53998125 | MS.gene05583:CDS |
| GAGGTGGATAAAACCGATGG+AGG | 0.663661 | 3.2:+53998144 | MS.gene05583:CDS |
| GAAGAAGAGGTTGTTATCGG+CGG | 0.680562 | 3.2:-53997530 | None:intergenic |
| TTACACAAGACTTGATGAGG+AGG | 0.695990 | 3.2:+53998203 | MS.gene05583:CDS |
| TTGTGTGGAGGATTTCACGG+TGG | 0.704368 | 3.2:-53997431 | None:intergenic |
| TGAACATGAAGCATCCAAGG+TGG | 0.710959 | 3.2:-53997177 | None:intergenic |
| CGATACAGCGTTCGTCACGG+CGG | 0.713613 | 3.2:-53997837 | None:intergenic |
| CGAGTTTCCAAGATCCACCA+CGG | 0.714229 | 3.2:+53997482 | MS.gene05583:CDS |
| CCTCCAGCTAGTCGACAGCG+TGG | 0.733625 | 3.2:-53998007 | None:intergenic |
| CGATAAGCTCCGATACAGCG+TGG | 0.733944 | 3.2:-53997639 | None:intergenic |
| GTGGTTGTAATGGTGGACTG+AGG | 0.746411 | 3.2:-53997412 | None:intergenic |
| TACATGGAAAGATATCATTG+CGG | 0.753530 | 3.2:-53997558 | None:intergenic |
| TGAAACGGTGAAGATTAAGG+CGG | 0.757866 | 3.2:+53997798 | MS.gene05583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGGAATTATTAAATC+AGG | + | chr3.2:53997958-53997977 | MS.gene05583:CDS | 20.0% |
| ! | ATAAAACTCTTTCTTCTTCT+TGG | + | chr3.2:53997317-53997336 | MS.gene05583:CDS | 25.0% |
| !! | AAGAAGAAGAAAGAGTTTTA+TGG | - | chr3.2:53997318-53997337 | None:intergenic | 25.0% |
| !! | CAGCAATTTTGTAATATTTG+TGG | + | chr3.2:53997943-53997962 | MS.gene05583:CDS | 25.0% |
| !!! | AGAAGAAGAAAGAGTTTTAT+GGG | - | chr3.2:53997317-53997336 | None:intergenic | 25.0% |
| !!! | GTTTTATGGGTTTTGAATTT+AGG | - | chr3.2:53997304-53997323 | None:intergenic | 25.0% |
| ATTCGAAGAATATCGTGAAA+CGG | + | chr3.2:53997783-53997802 | MS.gene05583:CDS | 30.0% | |
| GTGGAAATTCCATCTAATTT+CGG | - | chr3.2:53997991-53998010 | None:intergenic | 30.0% | |
| TACATGGAAAGATATCATTG+CGG | - | chr3.2:53997561-53997580 | None:intergenic | 30.0% | |
| TTAAGTTCATGAACGTCAAA+CGG | + | chr3.2:53998067-53998086 | MS.gene05583:CDS | 30.0% | |
| ! | GAGATTTTTCGTTTCTTTGA+TGG | - | chr3.2:53997250-53997269 | None:intergenic | 30.0% |
| ! | TCTTTGATGGTAATAGTTGA+CGG | - | chr3.2:53997237-53997256 | None:intergenic | 30.0% |
| !! | GTTTTGAATTTAGGATGAGA+AGG | - | chr3.2:53997295-53997314 | None:intergenic | 30.0% |
| !!! | AGTTGGTTGTTTTTAATCCT+AGG | + | chr3.2:53998226-53998245 | MS.gene05583:CDS | 30.0% |
| !!! | GTTGGTTGTTTTTAATCCTA+GGG | + | chr3.2:53998227-53998246 | MS.gene05583:CDS | 30.0% |
| !!! | TCCACTTTTTTATGTGAGTT+GGG | + | chr3.2:53997892-53997911 | MS.gene05583:CDS | 30.0% |
| AAATCATCTTCAAATCGGGT+TGG | + | chr3.2:53997689-53997708 | MS.gene05583:CDS | 35.0% | |
| CGTGCAAATCATCTTCAAAT+CGG | + | chr3.2:53997684-53997703 | MS.gene05583:CDS | 35.0% | |
| CTATACACAATCACAAAGCA+AGG | - | chr3.2:53998261-53998280 | None:intergenic | 35.0% | |
| GATATTCTTCGAATTTCGAG+AGG | - | chr3.2:53997777-53997796 | None:intergenic | 35.0% | |
| GTGCAAATCATCTTCAAATC+GGG | + | chr3.2:53997685-53997704 | MS.gene05583:CDS | 35.0% | |
| TAAGTTCATGAACGTCAAAC+GGG | + | chr3.2:53998068-53998087 | MS.gene05583:CDS | 35.0% | |
| TCCCAACTCACATAAAAAAG+TGG | - | chr3.2:53997896-53997915 | None:intergenic | 35.0% | |
| TGTTATGGATCTTCAGGATT+CGG | - | chr3.2:53997744-53997763 | None:intergenic | 35.0% | |
| TGTTTACACAAGACTTGATG+AGG | + | chr3.2:53998200-53998219 | MS.gene05583:CDS | 35.0% | |
| ! | TATGTGAGTTGGGACATAAT+GGG | + | chr3.2:53997902-53997921 | MS.gene05583:CDS | 35.0% |
| ! | TGCATGAATTTTTGCAGAAG+AGG | - | chr3.2:53997357-53997376 | None:intergenic | 35.0% |
| ! | TTATGTGAGTTGGGACATAA+TGG | + | chr3.2:53997901-53997920 | MS.gene05583:CDS | 35.0% |
| !! | GTTTGGAAAGGTGTTTGTTT+CGG | - | chr3.2:53997716-53997735 | None:intergenic | 35.0% |
| !! | TTTGGAAAGGTGTTTGTTTC+GGG | - | chr3.2:53997715-53997734 | None:intergenic | 35.0% |
| !!! | CTCCACTTTTTTATGTGAGT+TGG | + | chr3.2:53997891-53997910 | MS.gene05583:CDS | 35.0% |
| !!! | TTGACGGTTATCTTGTTTTC+CGG | - | chr3.2:53997221-53997240 | None:intergenic | 35.0% |
| AGGGAAGAAGAGGTTGTTAT+CGG | - | chr3.2:53997536-53997555 | None:intergenic | 40.0% | |
| ATTTGCACGATGTTATGACC+CGG | - | chr3.2:53997673-53997692 | None:intergenic | 40.0% | |
| CAATGAGATAAGGGATTGTG+TGG | - | chr3.2:53997449-53997468 | None:intergenic | 40.0% | |
| CACACAATCCCTTATCTCAT+TGG | + | chr3.2:53997447-53997466 | MS.gene05583:CDS | 40.0% | |
| GAAAGATATCATTGCGGAGA+GGG | - | chr3.2:53997555-53997574 | None:intergenic | 40.0% | |
| GGGTTGAACCAATGAGATAA+GGG | - | chr3.2:53997458-53997477 | None:intergenic | 40.0% | |
| TCGTGAAACGGTGAAGATTA+AGG | + | chr3.2:53997795-53997814 | MS.gene05583:CDS | 40.0% | |
| TGAAACGGTGAAGATTAAGG+CGG | + | chr3.2:53997798-53997817 | MS.gene05583:CDS | 40.0% | |
| TTACACAAGACTTGATGAGG+AGG | + | chr3.2:53998203-53998222 | MS.gene05583:CDS | 40.0% | |
| TTAGGATGAGAAGGTGAAGA+GGG | - | chr3.2:53997286-53997305 | None:intergenic | 40.0% | |
| ! | ATGTGAGTTGGGACATAATG+GGG | + | chr3.2:53997903-53997922 | MS.gene05583:CDS | 40.0% |
| ! | CGAATTTCGAGAGGATTTTC+TGG | - | chr3.2:53997768-53997787 | None:intergenic | 40.0% |
| ! | GGATTTTCGCCGAAATTAGA+TGG | + | chr3.2:53997979-53997998 | MS.gene05583:CDS | 40.0% |
| ! | TTTAGGATGAGAAGGTGAAG+AGG | - | chr3.2:53997287-53997306 | None:intergenic | 40.0% |
| !! | GATTCGGTGTATGTTTGGAA+AGG | - | chr3.2:53997728-53997747 | None:intergenic | 40.0% |
| !! | TTCAGGATTCGGTGTATGTT+TGG | - | chr3.2:53997733-53997752 | None:intergenic | 40.0% |
| !!! | AACCGATGGAGGTTTTGATT+CGG | + | chr3.2:53998155-53998174 | MS.gene05583:CDS | 40.0% |
| !!! | AGAGGATTTTCTGGCTGTTA+TGG | - | chr3.2:53997759-53997778 | None:intergenic | 40.0% |
| AAGACTTGATGAGGAGGAGT+TGG | + | chr3.2:53998209-53998228 | MS.gene05583:CDS | 45.0% | |
| AATTCCTGATGACATCGAGC+GGG | + | chr3.2:53998041-53998060 | MS.gene05583:CDS | 45.0% | |
| ATCGGCGGAGATATCTGATT+CGG | - | chr3.2:53997518-53997537 | None:intergenic | 45.0% | |
| CAATTCCTGATGACATCGAG+CGG | + | chr3.2:53998040-53998059 | MS.gene05583:CDS | 45.0% | |
| CACCGAATCAAAACCTCCAT+CGG | - | chr3.2:53998160-53998179 | None:intergenic | 45.0% | |
| GAAGAAGAGGTTGTTATCGG+CGG | - | chr3.2:53997533-53997552 | None:intergenic | 45.0% | |
| GATGAGGTGGATAAAACCGA+TGG | + | chr3.2:53998141-53998160 | MS.gene05583:CDS | 45.0% | |
| GGAAAGATATCATTGCGGAG+AGG | - | chr3.2:53997556-53997575 | None:intergenic | 45.0% | |
| GGATTGTGTGGAGGATTTCA+CGG | - | chr3.2:53997437-53997456 | None:intergenic | 45.0% | |
| GGATTTCACGGTGGTTGTAA+TGG | - | chr3.2:53997425-53997444 | None:intergenic | 45.0% | |
| GGTGAAGAGGGTTGTGATAA+AGG | - | chr3.2:53997274-53997293 | None:intergenic | 45.0% | |
| TCTGGCTGTTATGGATCTTC+AGG | - | chr3.2:53997750-53997769 | None:intergenic | 45.0% | |
| TGAGATAAGGGATTGTGTGG+AGG | - | chr3.2:53997446-53997465 | None:intergenic | 45.0% | |
| TTGATCCTCATTGTCCACCT+TGG | + | chr3.2:53997163-53997182 | MS.gene05583:CDS | 45.0% | |
| TTTCACGGTGGTTGTAATGG+TGG | - | chr3.2:53997422-53997441 | None:intergenic | 45.0% | |
| TTTGCACGATGTTATGACCC+GGG | - | chr3.2:53997672-53997691 | None:intergenic | 45.0% | |
| ! | CGGGTTGAACCAATGAGATA+AGG | - | chr3.2:53997459-53997478 | None:intergenic | 45.0% |
| ! | TGAACATGAAGCATCCAAGG+TGG | - | chr3.2:53997180-53997199 | None:intergenic | 45.0% |
| !!! | ACGGTTATCTTGTTTTCCGG+CGG | - | chr3.2:53997218-53997237 | None:intergenic | 45.0% |
| !!! | TGGAGGTTTTGATTCGGTGA+TGG | + | chr3.2:53998161-53998180 | MS.gene05583:CDS | 45.0% |
| AAGCAAGGAAGAACAGCCCT+AGG | - | chr3.2:53998246-53998265 | None:intergenic | 50.0% | |
| AGCATCCAAGGTGGACAATG+AGG | - | chr3.2:53997171-53997190 | None:intergenic | 50.0% | |
| ATCCGCAAACCACGCTGTAT+CGG | + | chr3.2:53997630-53997649 | MS.gene05583:CDS | 50.0% | |
| ATCTTTCCATGTACCGCGTG+CGG | + | chr3.2:53997568-53997587 | MS.gene05583:CDS | 50.0% | |
| CACGCTGTATCGGAGCTTAT+CGG | + | chr3.2:53997640-53997659 | MS.gene05583:CDS | 50.0% | |
| CGAGTTTCCAAGATCCACCA+CGG | + | chr3.2:53997482-53997501 | MS.gene05583:CDS | 50.0% | |
| CTCGTTTGTCGTGTTATCGC+GGG | + | chr3.2:53998096-53998115 | MS.gene05583:CDS | 50.0% | |
| GAGGTGGATAAAACCGATGG+AGG | + | chr3.2:53998144-53998163 | MS.gene05583:CDS | 50.0% | |
| GATTCGGATTGCTTCTTCCG+TGG | - | chr3.2:53997502-53997521 | None:intergenic | 50.0% | |
| GCTCGTTTGTCGTGTTATCG+CGG | + | chr3.2:53998095-53998114 | MS.gene05583:CDS | 50.0% | |
| GTCAGATTTGGACGATGAGG+TGG | + | chr3.2:53998128-53998147 | MS.gene05583:CDS | 50.0% | |
| TGAGGTGATGATTGGGTGGT+GGG | - | chr3.2:53997397-53997416 | None:intergenic | 50.0% | |
| TGGATCTTGGAAACTCGGGT+CGG | - | chr3.2:53997479-53997498 | None:intergenic | 50.0% | |
| TGGGTCAGATTTGGACGATG+AGG | + | chr3.2:53998125-53998144 | MS.gene05583:CDS | 50.0% | |
| TGGTGATTCTCGAGGAGGTT+TGG | - | chr3.2:53997610-53997629 | None:intergenic | 50.0% | |
| TTGTCGTGTTATCGCGGGTT+GGG | + | chr3.2:53998101-53998120 | MS.gene05583:CDS | 50.0% | |
| TTGTGTGGAGGATTTCACGG+TGG | - | chr3.2:53997434-53997453 | None:intergenic | 50.0% | |
| TTTGTCGTGTTATCGCGGGT+TGG | + | chr3.2:53998100-53998119 | MS.gene05583:CDS | 50.0% | |
| ! | ATACAGCGTGGTTTGCGGAT+TGG | - | chr3.2:53997630-53997649 | None:intergenic | 50.0% |
| ! | CGGTGAACATGAAGCATCCA+AGG | - | chr3.2:53997183-53997202 | None:intergenic | 50.0% |
| ! | TCTCGAGGAGGTTTGGTTTC+TGG | - | chr3.2:53997603-53997622 | None:intergenic | 50.0% |
| !! | CGTGGTGGATCTTGGAAACT+CGG | - | chr3.2:53997484-53997503 | None:intergenic | 50.0% |
| !! | GGTGGACTGAGGTGATGATT+GGG | - | chr3.2:53997404-53997423 | None:intergenic | 50.0% |
| !! | GTGGTGGATCTTGGAAACTC+GGG | - | chr3.2:53997483-53997502 | None:intergenic | 50.0% |
| !! | GTGGTTGTAATGGTGGACTG+AGG | - | chr3.2:53997415-53997434 | None:intergenic | 50.0% |
| !! | TGGTGGACTGAGGTGATGAT+TGG | - | chr3.2:53997405-53997424 | None:intergenic | 50.0% |
| !! | TTGCGGATTGGTGATTCTCG+AGG | - | chr3.2:53997618-53997637 | None:intergenic | 50.0% |
| AACTCCCGCTCGATGTCATC+AGG | - | chr3.2:53998048-53998067 | None:intergenic | 55.0% | |
| CACGATGTTATGACCCGGGT+CGG | - | chr3.2:53997668-53997687 | None:intergenic | 55.0% | |
| CAGCGATACAGCGTTCGTCA+CGG | - | chr3.2:53997843-53997862 | None:intergenic | 55.0% | |
| CATTGCGGAGAGGGAAGAAG+AGG | - | chr3.2:53997546-53997565 | None:intergenic | 55.0% | |
| CGATAAGCTCCGATACAGCG+TGG | - | chr3.2:53997642-53997661 | None:intergenic | 55.0% | |
| CTCCGATACAGCGTGGTTTG+CGG | - | chr3.2:53997635-53997654 | None:intergenic | 55.0% | |
| CTGAGGTGATGATTGGGTGG+TGG | - | chr3.2:53997398-53997417 | None:intergenic | 55.0% | |
| GACGAACGCTGTATCGCTGA+CGG | + | chr3.2:53997844-53997863 | MS.gene05583:CDS | 55.0% | |
| GGACTGAGGTGATGATTGGG+TGG | - | chr3.2:53997401-53997420 | None:intergenic | 55.0% | |
| GGATCTTGGAAACTCGGGTC+GGG | - | chr3.2:53997478-53997497 | None:intergenic | 55.0% | |
| TCGGATTGCTTCTTCCGTGG+TGG | - | chr3.2:53997499-53997518 | None:intergenic | 55.0% | |
| ! | TTTCCACGCTGTCGACTAGC+TGG | + | chr3.2:53998004-53998023 | MS.gene05583:CDS | 55.0% |
| !! | CGGATTGGTGATTCTCGAGG+AGG | - | chr3.2:53997615-53997634 | None:intergenic | 55.0% |
| !! | GCTTCTTCCGTGGTGGATCT+TGG | - | chr3.2:53997492-53997511 | None:intergenic | 55.0% |
| !! | GGGTTGGGTTGGGTCAGATT+TGG | + | chr3.2:53998116-53998135 | MS.gene05583:CDS | 55.0% |
| !! | GTGTTATCGCGGGTTGGGTT+GGG | + | chr3.2:53998106-53998125 | MS.gene05583:CDS | 55.0% |
| !! | TGATGATTGGGTGGTGGGAG+TGG | - | chr3.2:53997392-53997411 | None:intergenic | 55.0% |
| !! | TTTGATTCGGTGATGGCGCG+CGG | + | chr3.2:53998168-53998187 | MS.gene05583:CDS | 55.0% |
| !!! | ATCTTGTTTTCCGGCGGTCG+CGG | - | chr3.2:53997212-53997231 | None:intergenic | 55.0% |
| CGATACAGCGTTCGTCACGG+CGG | - | chr3.2:53997840-53997859 | None:intergenic | 60.0% | |
| CTGGAAAATCTCGCCGCACG+CGG | - | chr3.2:53997584-53997603 | None:intergenic | 60.0% | |
| GAGCTTATCGGATCCGACCC+GGG | + | chr3.2:53997652-53997671 | MS.gene05583:CDS | 60.0% | |
| GGAGCTTATCGGATCCGACC+CGG | + | chr3.2:53997651-53997670 | MS.gene05583:CDS | 60.0% | |
| GTGAAGATTAAGGCGGCGCG+TGG | + | chr3.2:53997805-53997824 | MS.gene05583:CDS | 60.0% | |
| ! | CACGCTGTCGACTAGCTGGA+GGG | + | chr3.2:53998008-53998027 | MS.gene05583:CDS | 60.0% |
| !! | CGTGTTATCGCGGGTTGGGT+TGG | + | chr3.2:53998105-53998124 | MS.gene05583:CDS | 60.0% |
| !! | TGATTGGGTGGTGGGAGTGG+TGG | - | chr3.2:53997389-53997408 | None:intergenic | 60.0% |
| ATCTCGCCGCACGCGGTACA+TGG | - | chr3.2:53997577-53997596 | None:intergenic | 65.0% | |
| CCTCCAGCTAGTCGACAGCG+TGG | - | chr3.2:53998010-53998029 | None:intergenic | 65.0% | |
| ! | CCACGCTGTCGACTAGCTGG+AGG | + | chr3.2:53998007-53998026 | MS.gene05583:CDS | 65.0% |
| ! | TTGTTTTCCGGCGGTCGCGG+CGG | - | chr3.2:53997209-53997228 | None:intergenic | 65.0% |
| ! | GTGATGGCGCGCGGCGAGAG+TGG | + | chr3.2:53998177-53998196 | MS.gene05583:CDS | 75.0% |
| ! | ACCGTCGCCGCCGCGACCGC+CGG | + | chr3.2:53997199-53997218 | MS.gene05583:CDS | 85.0% |
| ! | TCCGGCGGTCGCGGCGGCGA+CGG | - | chr3.2:53997203-53997222 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 53997121 | 53998287 | 53997121 | ID=MS.gene05583 |
| chr3.2 | mRNA | 53997121 | 53998287 | 53997121 | ID=MS.gene05583.t1;Parent=MS.gene05583 |
| chr3.2 | exon | 53997121 | 53998287 | 53997121 | ID=MS.gene05583.t1.exon1;Parent=MS.gene05583.t1 |
| chr3.2 | CDS | 53997121 | 53998287 | 53997121 | ID=cds.MS.gene05583.t1;Parent=MS.gene05583.t1 |
| Gene Sequence |
| Protein sequence |
