Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055910.t1 | XP_003590482.1 | 93.6 | 173 | 10 | 1 | 5 | 177 | 15 | 186 | 7.20E-83 | 316.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055910.t1 | G7IBJ4 | 93.6 | 173 | 10 | 1 | 5 | 177 | 15 | 186 | 1.7e-85 | 316.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055910.t1 | A0A396JNB2 | 95.0 | 160 | 7 | 1 | 18 | 177 | 1 | 159 | 1.9e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055909 | MS.gene055910 | 0.818811 | 1.61E-52 | -1.69E-46 |
| MS.gene055910 | MS.gene055911 | 0.821156 | 4.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTATTCATATCTATATT+AGG | + | 10692:3360-3379 | MS.gene055910:CDS | 15.0% |
| !! | TTGTTCCATAAATTATATCT+AGG | - | 10692:3194-3213 | MS.gene055910:intergenic | 20.0% |
| ! | AAAAAGAGACAATTACAAGA+AGG | + | 10692:3005-3024 | MS.gene055910:CDS | 25.0% |
| !! | AAGTGTATTGATATGTCAAT+TGG | + | 10692:3290-3309 | MS.gene055910:CDS | 25.0% |
| !! | ACTACATGAAAAAGGAATTT+TGG | + | 10692:3465-3484 | MS.gene055910:CDS | 25.0% |
| !! | TTGTTTGATTTCATTGTTTG+TGG | + | 10692:3229-3248 | MS.gene055910:CDS | 25.0% |
| !!! | AGAGTTTTTTCTGAAGATTA+TGG | + | 10692:3131-3150 | MS.gene055910:CDS | 25.0% |
| AAATTATATCTAGGTCCTCT+AGG | - | 10692:3185-3204 | MS.gene055910:intergenic | 30.0% | |
| AATTATATCTAGGTCCTCTA+GGG | - | 10692:3184-3203 | MS.gene055910:intergenic | 30.0% | |
| ACTGGTAAGTAAAAGAAAAG+TGG | - | 10692:3257-3276 | MS.gene055910:intergenic | 30.0% | |
| ATAAACAAGCCATCATCAAA+TGG | + | 10692:3095-3114 | MS.gene055910:CDS | 30.0% | |
| GAGGACCTAGATATAATTTA+TGG | + | 10692:3186-3205 | MS.gene055910:CDS | 30.0% | |
| TGCATCAAACTACATGAAAA+AGG | + | 10692:3457-3476 | MS.gene055910:CDS | 30.0% | |
| GTAGTTTGATGCAATCTTTG+AGG | - | 10692:3450-3469 | MS.gene055910:intergenic | 35.0% | |
| ! | CACTTTTCTTTCTTAGCAAC+TGG | - | 10692:3275-3294 | MS.gene055910:intergenic | 35.0% |
| !! | ATTTTAGTATTCGACCCTAG+AGG | + | 10692:3167-3186 | MS.gene055910:CDS | 35.0% |
| AAATGAGTGCATACGAGATG+AGG | + | 10692:3045-3064 | MS.gene055910:CDS | 40.0% | |
| AAGCCATCATCAAATGGAAG+AGG | + | 10692:3101-3120 | MS.gene055910:CDS | 40.0% | |
| AGAAGGTGAAGAAAGTCACA+TGG | + | 10692:3022-3041 | MS.gene055910:CDS | 40.0% | |
| AGTCCTCTTCCATTTGATGA+TGG | - | 10692:3107-3126 | MS.gene055910:intergenic | 40.0% | |
| ATGAGGAGTGAATACAAGCA+TGG | + | 10692:3062-3081 | MS.gene055910:CDS | 40.0% | |
| ! | TTCTGAAGATTATGGAACGC+AGG | + | 10692:3139-3158 | MS.gene055910:CDS | 40.0% |
| CGACCAGAAACACGAGATGA+AGG | - | 10692:3407-3426 | MS.gene055910:intergenic | 50.0% | |
| GCTCCTTCATCTCGTGTTTC+TGG | + | 10692:3401-3420 | MS.gene055910:CDS | 50.0% | |
| !! | TCATCTCGTGTTTCTGGTCG+AGG | + | 10692:3407-3426 | MS.gene055910:CDS | 50.0% |
| TGCAGCACTACCACTTCCTC+AGG | + | 10692:3499-3518 | MS.gene055910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10692 | gene | 2988 | 3520 | 2988 | ID=MS.gene055910 |
| 10692 | mRNA | 2988 | 3520 | 2988 | ID=MS.gene055910.t1;Parent=MS.gene055910 |
| 10692 | exon | 2988 | 3520 | 2988 | ID=MS.gene055910.t1.exon1;Parent=MS.gene055910.t1 |
| 10692 | CDS | 2988 | 3520 | 2988 | ID=cds.MS.gene055910.t1;Parent=MS.gene055910.t1 |
| Gene Sequence |
| Protein sequence |
