Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055929.t1 | AES80930.2 | 88.6 | 166 | 19 | 0 | 1 | 166 | 1 | 166 | 1.90E-77 | 298.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055929.t1 | Q8GZQ3 | 50.6 | 168 | 81 | 2 | 1 | 166 | 1 | 168 | 4.3e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055929.t1 | G7L1J6 | 88.6 | 166 | 19 | 0 | 1 | 166 | 1 | 166 | 1.4e-77 | 298.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055634 | MS.gene055929 | 0.808278 | 3.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055929.t1 | MTR_7g086640 | 88.554 | 166 | 19 | 0 | 1 | 166 | 1 | 166 | 8.97e-100 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055929.t1 | AT3G03710 | 69.149 | 94 | 28 | 1 | 74 | 166 | 75 | 168 | 1.16e-34 | 128 |
| MS.gene055929.t1 | AT2G47220 | 73.750 | 80 | 21 | 0 | 87 | 166 | 21 | 100 | 1.86e-34 | 125 |
Find 55 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTCGTCATCGGAGGTTT+TGG | 0.263107 | 7.3:+22274038 | MS.gene055929:CDS |
| CGTTCTAGCTTCCCCGCGTT+TGG | 0.271590 | 7.3:+22273949 | MS.gene055929:CDS |
| TTTGGTTGAGACTGGTCATA+TGG | 0.379849 | 7.3:+22275456 | MS.gene055929:CDS |
| GTTCTAGCTTCCCCGCGTTT+GGG | 0.383062 | 7.3:+22273950 | MS.gene055929:CDS |
| TGACGAATCAATTGAAGCTT+TGG | 0.387452 | 7.3:-22274025 | None:intergenic |
| TGTGTACACCACTGTTTGTT+TGG | 0.407615 | 7.3:+22276628 | MS.gene055929:CDS |
| GAAGATGAGAGGCTTGGACT+TGG | 0.433258 | 7.3:-22273920 | None:intergenic |
| CTCTTGATAATTCACAGAAA+GGG | 0.438673 | 7.3:-22276684 | None:intergenic |
| AAACGCGGGGAAGCTAGAAC+GGG | 0.444716 | 7.3:-22273947 | None:intergenic |
| GTCACCAACGGGAATCTTGA+CGG | 0.466681 | 7.3:-22274100 | None:intergenic |
| GAACCTGCGACAATTCTTCC+CGG | 0.470832 | 7.3:-22273998 | None:intergenic |
| AAGTGGTTCTGTTACAGTTA+CGG | 0.474887 | 7.3:+22275489 | MS.gene055929:CDS |
| ACGGGAATCTTGACGGAATG+AGG | 0.478148 | 7.3:-22274093 | None:intergenic |
| CTTACATGTCGGTCACCAAC+GGG | 0.482729 | 7.3:-22274111 | None:intergenic |
| TTTCTGCCGCTGGTCGCACT+AGG | 0.502692 | 7.3:+22276711 | MS.gene055929:CDS |
| CAAACGCGGGGAAGCTAGAA+CGG | 0.513194 | 7.3:-22273948 | None:intergenic |
| GGGCCATGGAAGGTGGTGCT+AGG | 0.521871 | 7.3:-22273853 | None:intergenic |
| GCTCTTGATAATTCACAGAA+AGG | 0.523392 | 7.3:-22276685 | None:intergenic |
| CGGGAATCTTGACGGAATGA+GGG | 0.524913 | 7.3:-22274092 | None:intergenic |
| CGGGGAAGCTAGAACGGGGA+GGG | 0.524959 | 7.3:-22273942 | None:intergenic |
| GGGAGGGAAGATGAGAGGCT+TGG | 0.526762 | 7.3:-22273926 | None:intergenic |
| TGTCCTAGCACCACCTTCCA+TGG | 0.534864 | 7.3:+22273850 | MS.gene055929:CDS |
| GGTGGAATGTGGTAGGGCCA+TGG | 0.541251 | 7.3:-22273867 | None:intergenic |
| TTGGTTGAGACTGGTCATAT+GGG | 0.547677 | 7.3:+22275457 | MS.gene055929:CDS |
| AGCTTTAATTTCCCAAACGC+GGG | 0.549424 | 7.3:-22273961 | None:intergenic |
| TGTGGTAGGGCCATGGAAGG+TGG | 0.553808 | 7.3:-22273860 | None:intergenic |
| AGCTTCAATTGATTCGTCAT+CGG | 0.554203 | 7.3:+22274029 | MS.gene055929:CDS |
| TCGAAGGTTGAGAATGGCGG+TGG | 0.555160 | 7.3:-22273885 | None:intergenic |
| GAATGGCGGTGGAATGTGGT+AGG | 0.564324 | 7.3:-22273874 | None:intergenic |
| TTCAATTGATTCGTCATCGG+AGG | 0.564669 | 7.3:+22274032 | MS.gene055929:CDS |
| TTGAGAATGGCGGTGGAATG+TGG | 0.577565 | 7.3:-22273878 | None:intergenic |
| GGAACTTCGAAGGTTGAGAA+TGG | 0.581145 | 7.3:-22273891 | None:intergenic |
| GAATGTGGTAGGGCCATGGA+AGG | 0.582242 | 7.3:-22273863 | None:intergenic |
| ACTTACATGTCGGTCACCAA+CGG | 0.583308 | 7.3:-22274112 | None:intergenic |
| TCTTGATAATTCACAGAAAG+GGG | 0.592284 | 7.3:-22276683 | None:intergenic |
| GAGGCTTGGACTTGGAGAGT+AGG | 0.596282 | 7.3:-22273912 | None:intergenic |
| GGTTCTGTTACAGTTACGGA+TGG | 0.596302 | 7.3:+22275493 | MS.gene055929:CDS |
| TAAACGAGAAGGAAAGACAA+AGG | 0.596829 | 7.3:+22276808 | MS.gene055929:CDS |
| TTTCCGGGAAGAATTGTCGC+AGG | 0.607212 | 7.3:+22273995 | MS.gene055929:CDS |
| CATTCCGTCAAGATTCCCGT+TGG | 0.607335 | 7.3:+22274096 | MS.gene055929:CDS |
| AGGAAAGACAAAGGATCATG+AGG | 0.620066 | 7.3:+22276817 | MS.gene055929:CDS |
| TTGGAGAGTAGGAACTTCGA+AGG | 0.624326 | 7.3:-22273901 | None:intergenic |
| TTGAGACTGGTCATATGGGA+AGG | 0.626257 | 7.3:+22275461 | MS.gene055929:CDS |
| GCGGGGAAGCTAGAACGGGG+AGG | 0.627133 | 7.3:-22273943 | None:intergenic |
| AATGGCGGTGGAATGTGGTA+GGG | 0.635010 | 7.3:-22273873 | None:intergenic |
| GAACGGGGAGGGAAGATGAG+AGG | 0.636531 | 7.3:-22273931 | None:intergenic |
| GGGAATCTTGACGGAATGAG+GGG | 0.641670 | 7.3:-22274091 | None:intergenic |
| GAGCTTTAATTTCCCAAACG+CGG | 0.644028 | 7.3:-22273962 | None:intergenic |
| AATATCATCCAAACAAACAG+TGG | 0.649281 | 7.3:-22276636 | None:intergenic |
| AACGCGGGGAAGCTAGAACG+GGG | 0.673668 | 7.3:-22273946 | None:intergenic |
| ACTTCGAAGGTTGAGAATGG+CGG | 0.682196 | 7.3:-22273888 | None:intergenic |
| CATATGGGAAGGCAAGCAAG+TGG | 0.683058 | 7.3:+22275472 | MS.gene055929:CDS |
| GCTTTAATTTCCCAAACGCG+GGG | 0.690642 | 7.3:-22273960 | None:intergenic |
| CTTGATAATTCACAGAAAGG+GGG | 0.692656 | 7.3:-22276682 | None:intergenic |
| GGCATACCTAGTGCGACCAG+CGG | 0.717125 | 7.3:-22276717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTTATTACTCTATAA+AGG | + | chr7.3:22275601-22275620 | MS.gene055929:intron | 15.0% |
| !! | AGGCATAAATATTAAATAAT+AGG | + | chr7.3:22275413-22275432 | MS.gene055929:intron | 15.0% |
| !! | TGTTACATAAATAATGATAA+TGG | + | chr7.3:22274188-22274207 | MS.gene055929:intron | 15.0% |
| !!! | AGTTTTTTAAACTTAAACAA+GGG | - | chr7.3:22275627-22275646 | None:intergenic | 15.0% |
| !!! | ATATTAAATAATAGGTTTTG+TGG | + | chr7.3:22275421-22275440 | MS.gene055929:intron | 15.0% |
| !!! | CGTCATTATTTTAAAATATA+AGG | - | chr7.3:22274277-22274296 | None:intergenic | 15.0% |
| !!! | CTAATAATTTTTGTTCTTAA+GGG | + | chr7.3:22275172-22275191 | MS.gene055929:intron | 15.0% |
| !!! | GTTTTCATATTTATTTTGAT+TGG | + | chr7.3:22275527-22275546 | MS.gene055929:intron | 15.0% |
| !!! | TCTAATAATTTTTGTTCTTA+AGG | + | chr7.3:22275171-22275190 | MS.gene055929:intron | 15.0% |
| !!! | TTTAAATACAAATCTCTTTT+GGG | + | chr7.3:22274538-22274557 | MS.gene055929:intron | 15.0% |
| !! | AACTATAGATTTACATTGAT+AGG | + | chr7.3:22276072-22276091 | MS.gene055929:intron | 20.0% |
| !! | AATGAATAAAACTTACATGT+CGG | - | chr7.3:22274125-22274144 | None:intergenic | 20.0% |
| !! | ACATAAGTTACACATTAAAT+TGG | + | chr7.3:22274906-22274925 | MS.gene055929:intron | 20.0% |
| !! | TAAAAGTAGATCAAATCAAA+AGG | - | chr7.3:22276286-22276305 | None:intergenic | 20.0% |
| !! | TTTCTTTGTCAAATGATTAT+TGG | + | chr7.3:22274859-22274878 | MS.gene055929:intron | 20.0% |
| !!! | AATAATCAGAAAAGTATGTA+CGG | - | chr7.3:22276741-22276760 | None:intergenic | 20.0% |
| !!! | AATTCAATCCATTTTTTATC+TGG | + | chr7.3:22275079-22275098 | MS.gene055929:intron | 20.0% |
| !!! | CAGTTTTTTAAACTTAAACA+AGG | - | chr7.3:22275628-22275647 | None:intergenic | 20.0% |
| !!! | CTACTTTTATATTGAAGTTT+TGG | + | chr7.3:22276297-22276316 | MS.gene055929:intron | 20.0% |
| !!! | GTTTAAATACAAATCTCTTT+TGG | + | chr7.3:22274537-22274556 | MS.gene055929:intron | 20.0% |
| !!! | TATGATAATGAAGTGAAATT+GGG | + | chr7.3:22276110-22276129 | MS.gene055929:intron | 20.0% |
| !!! | TTATTGTTTCTTTTAGAGTT+TGG | - | chr7.3:22276452-22276471 | None:intergenic | 20.0% |
| !!! | TTTACATTATTTTTGTAGCT+GGG | + | chr7.3:22275352-22275371 | MS.gene055929:intron | 20.0% |
| !!! | TTTTACATTATTTTTGTAGC+TGG | + | chr7.3:22275351-22275370 | MS.gene055929:intron | 20.0% |
| !!! | TTTTTTTCTTTCTATTGTTG+TGG | + | chr7.3:22275238-22275257 | MS.gene055929:intron | 20.0% |
| ! | AAAGTCAGAAGTAATAATGT+GGG | - | chr7.3:22275745-22275764 | None:intergenic | 25.0% |
| ! | ATAGTGAAACATAATCATAC+CGG | + | chr7.3:22275038-22275057 | MS.gene055929:intron | 25.0% |
| ! | ATATATCATACAGAATCAAG+AGG | - | chr7.3:22274984-22275003 | None:intergenic | 25.0% |
| ! | CAAACTTTGCTACATAAATA+AGG | - | chr7.3:22274719-22274738 | None:intergenic | 25.0% |
| ! | GATGTTCTTAAATCACAAAA+AGG | - | chr7.3:22274456-22274475 | None:intergenic | 25.0% |
| ! | GTCTCTACATTTATTTAGTT+AGG | - | chr7.3:22275201-22275220 | None:intergenic | 25.0% |
| ! | GTTATATTGATACTGAAAGT+TGG | + | chr7.3:22276379-22276398 | MS.gene055929:intron | 25.0% |
| ! | TAAAGTCAGAAGTAATAATG+TGG | - | chr7.3:22275746-22275765 | None:intergenic | 25.0% |
| ! | TAATTTAATGTGTAGTGTCT+CGG | + | chr7.3:22274354-22274373 | MS.gene055929:intron | 25.0% |
| ! | TACAGATCAAAAACAGAAAT+TGG | - | chr7.3:22275976-22275995 | None:intergenic | 25.0% |
| ! | TTATCATACCAATACATCAT+CGG | - | chr7.3:22276098-22276117 | None:intergenic | 25.0% |
| !! | GTATGATAATGAAGTGAAAT+TGG | + | chr7.3:22276109-22276128 | MS.gene055929:intron | 25.0% |
| !!! | TAACACAATTTTGATCCATA+TGG | - | chr7.3:22275574-22275593 | None:intergenic | 25.0% |
| !!! | TTACATTATTTTTGTAGCTG+GGG | + | chr7.3:22275353-22275372 | MS.gene055929:intron | 25.0% |
| AAATCACTCTAACAAGTCAA+AGG | - | chr7.3:22275297-22275316 | None:intergenic | 30.0% | |
| AAGTAATAATGTGGGTGAAA+TGG | - | chr7.3:22275737-22275756 | None:intergenic | 30.0% | |
| AATATCATCCAAACAAACAG+TGG | - | chr7.3:22276639-22276658 | None:intergenic | 30.0% | |
| AGGATAATTGTTGCATAGTT+TGG | + | chr7.3:22274603-22274622 | MS.gene055929:intron | 30.0% | |
| ATCATGTGCCAGATAAAAAA+TGG | - | chr7.3:22275090-22275109 | None:intergenic | 30.0% | |
| CTATGCAACAATTATCCTTT+CGG | - | chr7.3:22274601-22274620 | None:intergenic | 30.0% | |
| CTCAAAAATTAAGCGCTATT+AGG | - | chr7.3:22276556-22276575 | None:intergenic | 30.0% | |
| GGGAAATAAAATAACAGAAG+TGG | + | chr7.3:22276214-22276233 | MS.gene055929:intron | 30.0% | |
| GTATCTTTATAGAGTAAGAG+AGG | + | chr7.3:22275393-22275412 | MS.gene055929:intron | 30.0% | |
| GTGAAGAGCTATTTACTATA+TGG | + | chr7.3:22274764-22274783 | MS.gene055929:intron | 30.0% | |
| TAGTGAAACATAATCATACC+GGG | + | chr7.3:22275039-22275058 | MS.gene055929:intron | 30.0% | |
| TGACTATTCATCTAAATCAG+AGG | - | chr7.3:22275953-22275972 | None:intergenic | 30.0% | |
| TGCTAAAGTTGTGATACTTA+TGG | + | chr7.3:22275009-22275028 | MS.gene055929:intron | 30.0% | |
| TGTAGCAAAGTTTGTATTTG+CGG | + | chr7.3:22274725-22274744 | MS.gene055929:intron | 30.0% | |
| TGTGGTATCAAACATAAAAC+TGG | + | chr7.3:22276519-22276538 | MS.gene055929:intron | 30.0% | |
| TTGCTACATAAATAAGGTGA+AGG | - | chr7.3:22274713-22274732 | None:intergenic | 30.0% | |
| ! | AGAGTGATTTTGTTCGAAAA+TGG | + | chr7.3:22275307-22275326 | MS.gene055929:intron | 30.0% |
| ! | CTCTTGATAATTCACAGAAA+GGG | - | chr7.3:22276687-22276706 | None:intergenic | 30.0% |
| ! | TCTTGATAATTCACAGAAAG+GGG | - | chr7.3:22276686-22276705 | None:intergenic | 30.0% |
| ! | TTCTTGTTGTAATCATGAGA+AGG | + | chr7.3:22274485-22274504 | MS.gene055929:intron | 30.0% |
| ! | TTTACGATCAGTGTTATTAC+AGG | + | chr7.3:22275650-22275669 | MS.gene055929:intron | 30.0% |
| ! | TTTTCAATTGCATTTTGCAG+TGG | + | chr7.3:22276777-22276796 | MS.gene055929:intron | 30.0% |
| !! | ACAAATCTCTTTTGGGAAAA+TGG | + | chr7.3:22274545-22274564 | MS.gene055929:intron | 30.0% |
| !! | TGCATAGTTTGGTTTGTATT+AGG | + | chr7.3:22274614-22274633 | MS.gene055929:intron | 30.0% |
| !! | TGGTTTGTATTAGGTCTTTT+AGG | + | chr7.3:22274623-22274642 | MS.gene055929:intron | 30.0% |
| !!! | GTTTCTTTTAGAGTTTGGAT+TGG | - | chr7.3:22276447-22276466 | None:intergenic | 30.0% |
| !!! | TTTGATTTTTGAGTTCCACA+CGG | + | chr7.3:22275796-22275815 | MS.gene055929:intron | 30.0% |
| AAACCCAAACAAGATTGCAA+GGG | - | chr7.3:22274417-22274436 | None:intergenic | 35.0% | |
| AAAGGAAGATGACAATGACA+TGG | - | chr7.3:22276268-22276287 | None:intergenic | 35.0% | |
| AAGATGCACGACATTTATAG+TGG | + | chr7.3:22276485-22276504 | MS.gene055929:intron | 35.0% | |
| ACAAAATACTAGTGAACCCA+AGG | - | chr7.3:22274519-22274538 | None:intergenic | 35.0% | |
| ACAATACTCACCTTACAAGT+TGG | + | chr7.3:22275858-22275877 | MS.gene055929:intron | 35.0% | |
| ACCAAAACTATAAGCACGAA+AGG | + | chr7.3:22276037-22276056 | MS.gene055929:intron | 35.0% | |
| AGATGCACGACATTTATAGT+GGG | + | chr7.3:22276486-22276505 | MS.gene055929:intron | 35.0% | |
| AGCAATATATATAGTCCGTG+TGG | - | chr7.3:22275814-22275833 | None:intergenic | 35.0% | |
| AGTTAGGGTATGTGAGTTTA+TGG | + | chr7.3:22276139-22276158 | MS.gene055929:intron | 35.0% | |
| CATCAGATTGAAGACATGTT+TGG | + | chr7.3:22274795-22274814 | MS.gene055929:intron | 35.0% | |
| CCAAAACTATAAGCACGAAA+GGG | + | chr7.3:22276038-22276057 | MS.gene055929:intron | 35.0% | |
| GTAGCAAAGTTTGTATTTGC+GGG | + | chr7.3:22274726-22274745 | MS.gene055929:intron | 35.0% | |
| TAAACGAGAAGGAAAGACAA+AGG | + | chr7.3:22276808-22276827 | MS.gene055929:CDS | 35.0% | |
| TCAATGTCACTATCAGATTC+TGG | + | chr7.3:22276333-22276352 | MS.gene055929:intron | 35.0% | |
| TGACGAATCAATTGAAGCTT+TGG | - | chr7.3:22274028-22274047 | None:intergenic | 35.0% | |
| TGATTGTGAACATTGCCATA+TGG | + | chr7.3:22275556-22275575 | MS.gene055929:intron | 35.0% | |
| TTGTATTTGCGGGAAAAGTA+AGG | + | chr7.3:22274736-22274755 | MS.gene055929:intron | 35.0% | |
| TTGTTGTAATCATGAGAAGG+AGG | + | chr7.3:22274488-22274507 | MS.gene055929:intron | 35.0% | |
| ! | AAGTGGTTCTGTTACAGTTA+CGG | + | chr7.3:22275489-22275508 | MS.gene055929:CDS | 35.0% |
| ! | AATCTTACAATCTGGAACTG+GGG | - | chr7.3:22275903-22275922 | None:intergenic | 35.0% |
| ! | AGTTGAAGGAAATGAGTTGA+AGG | - | chr7.3:22276006-22276025 | None:intergenic | 35.0% |
| ! | CTTGATAATTCACAGAAAGG+GGG | - | chr7.3:22276685-22276704 | None:intergenic | 35.0% |
| ! | GAATCTTACAATCTGGAACT+GGG | - | chr7.3:22275904-22275923 | None:intergenic | 35.0% |
| ! | GCTCTTGATAATTCACAGAA+AGG | - | chr7.3:22276688-22276707 | None:intergenic | 35.0% |
| ! | TTAGAGTTTGGATTGGACAT+AGG | - | chr7.3:22276440-22276459 | None:intergenic | 35.0% |
| ! | TTGTGGCATTCTACAGATTT+TGG | + | chr7.3:22275438-22275457 | MS.gene055929:intron | 35.0% |
| !! | AGCTTCAATTGATTCGTCAT+CGG | + | chr7.3:22274029-22274048 | MS.gene055929:CDS | 35.0% |
| !!! | CTTTTAGGATTGCTACTTTG+AGG | + | chr7.3:22274638-22274657 | MS.gene055929:intron | 35.0% |
| !!! | TGGAGGTTTTTTAAACGAGA+AGG | + | chr7.3:22276797-22276816 | MS.gene055929:CDS | 35.0% |
| AAAAAATCGGATGGCTCACT+AGG | - | chr7.3:22276662-22276681 | None:intergenic | 40.0% | |
| AACTCACATACCCTAACTCA+TGG | - | chr7.3:22276137-22276156 | None:intergenic | 40.0% | |
| AAGAGGGAATGCAAGAAAGA+AGG | + | chr7.3:22276193-22276212 | MS.gene055929:intron | 40.0% | |
| AATAGTTGTTGCCACCATAG+TGG | + | chr7.3:22274572-22274591 | MS.gene055929:intron | 40.0% | |
| AGAGGGAATGCAAGAAAGAA+GGG | + | chr7.3:22276194-22276213 | MS.gene055929:intron | 40.0% | |
| AGGGTGACATTCCTTATTGA+AGG | - | chr7.3:22274398-22274417 | None:intergenic | 40.0% | |
| AGTTGGTTGGATGTGAAAGA+GGG | + | chr7.3:22276177-22276196 | MS.gene055929:intron | 40.0% | |
| ATAATGTGGGTGAAATGGCA+AGG | - | chr7.3:22275732-22275751 | None:intergenic | 40.0% | |
| ATGTGATACAGTGATCTGTG+AGG | - | chr7.3:22275926-22275945 | None:intergenic | 40.0% | |
| ATTGAATCAAATCACGCGCT+TGG | + | chr7.3:22275130-22275149 | MS.gene055929:intron | 40.0% | |
| CAAACCCAAACAAGATTGCA+AGG | - | chr7.3:22274418-22274437 | None:intergenic | 40.0% | |
| CAATGGAGTGTGTATGCATT+TGG | - | chr7.3:22276411-22276430 | None:intergenic | 40.0% | |
| CACAGAAAGGGGGAAAAAAT+CGG | - | chr7.3:22276675-22276694 | None:intergenic | 40.0% | |
| CTGTGAGGAATCTTACAATC+TGG | - | chr7.3:22275911-22275930 | None:intergenic | 40.0% | |
| GAAATTGGGTCCATGAGTTA+GGG | + | chr7.3:22276124-22276143 | MS.gene055929:intron | 40.0% | |
| GCGCGTGATTTGATTCAATT+TGG | - | chr7.3:22275129-22275148 | None:intergenic | 40.0% | |
| GGAAGAGGAAATGAACAAGT+TGG | + | chr7.3:22276160-22276179 | MS.gene055929:intron | 40.0% | |
| GGTATGTGAGTTTATGGAAG+AGG | + | chr7.3:22276145-22276164 | MS.gene055929:intron | 40.0% | |
| GTTGACGTGTCTTGCTTTAT+AGG | - | chr7.3:22274305-22274324 | None:intergenic | 40.0% | |
| TGAAATTGGGTCCATGAGTT+AGG | + | chr7.3:22276123-22276142 | MS.gene055929:intron | 40.0% | |
| TGCAACAATTATCCTTTCGG+TGG | - | chr7.3:22274598-22274617 | None:intergenic | 40.0% | |
| TGTGTACACCACTGTTTGTT+TGG | + | chr7.3:22276628-22276647 | MS.gene055929:CDS | 40.0% | |
| TTGATAGGCCGATGATGTAT+TGG | + | chr7.3:22276087-22276106 | MS.gene055929:intron | 40.0% | |
| ! | AAGTTGGTTGGATGTGAAAG+AGG | + | chr7.3:22276176-22276195 | MS.gene055929:intron | 40.0% |
| ! | ACAAGTCAAAGGCATAGTCT+TGG | - | chr7.3:22275286-22275305 | None:intergenic | 40.0% |
| ! | AGCTTTAATTTCCCAAACGC+GGG | - | chr7.3:22273964-22273983 | None:intergenic | 40.0% |
| ! | CAAGTCAAAGGCATAGTCTT+GGG | - | chr7.3:22275285-22275304 | None:intergenic | 40.0% |
| ! | CCCTTTCGTGCTTATAGTTT+TGG | - | chr7.3:22276041-22276060 | None:intergenic | 40.0% |
| ! | GAGCTTTAATTTCCCAAACG+CGG | - | chr7.3:22273965-22273984 | None:intergenic | 40.0% |
| ! | GGAATCTTACAATCTGGAAC+TGG | - | chr7.3:22275905-22275924 | None:intergenic | 40.0% |
| ! | TCAATTGCATTTTGCAGTGG+AGG | + | chr7.3:22276780-22276799 | MS.gene055929:intron | 40.0% |
| ! | TCACCCTTGCAATCTTGTTT+GGG | + | chr7.3:22274411-22274430 | MS.gene055929:intron | 40.0% |
| ! | TTGGTTGAGACTGGTCATAT+GGG | + | chr7.3:22275457-22275476 | MS.gene055929:CDS | 40.0% |
| ! | TTTGGTTGAGACTGGTCATA+TGG | + | chr7.3:22275456-22275475 | MS.gene055929:CDS | 40.0% |
| !! | ACCTTACAAGTTGGTTTGTG+GGG | + | chr7.3:22275867-22275886 | MS.gene055929:intron | 40.0% |
| !! | CACCTTACAAGTTGGTTTGT+GGG | + | chr7.3:22275866-22275885 | MS.gene055929:intron | 40.0% |
| !! | GAGGAAATGAACAAGTTGGT+TGG | + | chr7.3:22276164-22276183 | MS.gene055929:intron | 40.0% |
| !! | TCACCTTACAAGTTGGTTTG+TGG | + | chr7.3:22275865-22275884 | MS.gene055929:intron | 40.0% |
| !! | TTCAATTGATTCGTCATCGG+AGG | + | chr7.3:22274032-22274051 | MS.gene055929:CDS | 40.0% |
| !! | TTCCTTATTGAAGGTGTCTC+CGG | - | chr7.3:22274389-22274408 | None:intergenic | 40.0% |
| !!! | AAGCTCTGTTCGCTTTTTTC+CGG | + | chr7.3:22273979-22273998 | MS.gene055929:CDS | 40.0% |
| !!! | CTACAGATTTTGGTTGAGAC+TGG | + | chr7.3:22275448-22275467 | MS.gene055929:intron | 40.0% |
| AATGTCTTCTCCTGACTGCA+AGG | + | chr7.3:22275766-22275785 | MS.gene055929:intron | 45.0% | |
| ACCCCACAAACCAACTTGTA+AGG | - | chr7.3:22275871-22275890 | None:intergenic | 45.0% | |
| ACTTACATGTCGGTCACCAA+CGG | - | chr7.3:22274115-22274134 | None:intergenic | 45.0% | |
| ACTTCGAAGGTTGAGAATGG+CGG | - | chr7.3:22273891-22273910 | None:intergenic | 45.0% | |
| ACTTGCCCGACGTAAATGAT+AGG | - | chr7.3:22276361-22276380 | None:intergenic | 45.0% | |
| ATGAGAAGGAGGAGAAACCT+TGG | + | chr7.3:22274499-22274518 | MS.gene055929:intron | 45.0% | |
| ATGAGCCTAGATCTGCAAAG+CGG | - | chr7.3:22274932-22274951 | None:intergenic | 45.0% | |
| ATGTCTTCTCCTGACTGCAA+GGG | + | chr7.3:22275767-22275786 | MS.gene055929:intron | 45.0% | |
| CACATGTGTCAATGTCGTGT+TGG | - | chr7.3:22274824-22274843 | None:intergenic | 45.0% | |
| CTTGCCCGACGTAAATGATA+GGG | - | chr7.3:22276360-22276379 | None:intergenic | 45.0% | |
| GAAAGGGGGAAAAAATCGGA+TGG | - | chr7.3:22276671-22276690 | None:intergenic | 45.0% | |
| GGAACTTCGAAGGTTGAGAA+TGG | - | chr7.3:22273894-22273913 | None:intergenic | 45.0% | |
| GGTTCTGTTACAGTTACGGA+TGG | + | chr7.3:22275493-22275512 | MS.gene055929:CDS | 45.0% | |
| GTCACCCTTGCAATCTTGTT+TGG | + | chr7.3:22274410-22274429 | MS.gene055929:intron | 45.0% | |
| TGAGAAGGAGGAGAAACCTT+GGG | + | chr7.3:22274500-22274519 | MS.gene055929:intron | 45.0% | |
| TGTGCATTACATGCATGACC+CGG | - | chr7.3:22275060-22275079 | None:intergenic | 45.0% | |
| TTGCCCGACGTAAATGATAG+GGG | - | chr7.3:22276359-22276378 | None:intergenic | 45.0% | |
| TTGCGGGAAAAGTAAGGCAT+TGG | + | chr7.3:22274742-22274761 | MS.gene055929:intron | 45.0% | |
| TTGGACATAGGACTGGACAA+TGG | - | chr7.3:22276428-22276447 | None:intergenic | 45.0% | |
| TTGGAGAGTAGGAACTTCGA+AGG | - | chr7.3:22273904-22273923 | None:intergenic | 45.0% | |
| ! | AATGTGTAGTGTCTCGGTGT+TGG | + | chr7.3:22274360-22274379 | MS.gene055929:intron | 45.0% |
| ! | GCTTTAATTTCCCAAACGCG+GGG | - | chr7.3:22273963-22273982 | None:intergenic | 45.0% |
| ! | GTTTGGATTGGACATAGGAC+TGG | - | chr7.3:22276435-22276454 | None:intergenic | 45.0% |
| ! | TGATTCGTCATCGGAGGTTT+TGG | + | chr7.3:22274038-22274057 | MS.gene055929:CDS | 45.0% |
| ! | TTGAGACTGGTCATATGGGA+AGG | + | chr7.3:22275461-22275480 | MS.gene055929:CDS | 45.0% |
| !!! | AGCTCTGTTCGCTTTTTTCC+GGG | + | chr7.3:22273980-22273999 | MS.gene055929:CDS | 45.0% |
| AAATACACCCCCTTGCAGTC+AGG | - | chr7.3:22275779-22275798 | None:intergenic | 50.0% | |
| AATGGCGGTGGAATGTGGTA+GGG | - | chr7.3:22273876-22273895 | None:intergenic | 50.0% | |
| ACGGGAATCTTGACGGAATG+AGG | - | chr7.3:22274096-22274115 | None:intergenic | 50.0% | |
| CACCGGAGACACCTTCAATA+AGG | + | chr7.3:22274384-22274403 | MS.gene055929:intron | 50.0% | |
| CATATGGGAAGGCAAGCAAG+TGG | + | chr7.3:22275472-22275491 | MS.gene055929:CDS | 50.0% | |
| CATTCCGTCAAGATTCCCGT+TGG | + | chr7.3:22274096-22274115 | MS.gene055929:CDS | 50.0% | |
| CGGGAATCTTGACGGAATGA+GGG | - | chr7.3:22274095-22274114 | None:intergenic | 50.0% | |
| CTGGCCCCTATCATTTACGT+CGG | + | chr7.3:22276352-22276371 | MS.gene055929:intron | 50.0% | |
| CTTACATGTCGGTCACCAAC+GGG | - | chr7.3:22274114-22274133 | None:intergenic | 50.0% | |
| GAACCTGCGACAATTCTTCC+CGG | - | chr7.3:22274001-22274020 | None:intergenic | 50.0% | |
| GAAGATGAGAGGCTTGGACT+TGG | - | chr7.3:22273923-22273942 | None:intergenic | 50.0% | |
| GGGAATCTTGACGGAATGAG+GGG | - | chr7.3:22274094-22274113 | None:intergenic | 50.0% | |
| GGTGACTCTTGAGCAGTTGA+AGG | - | chr7.3:22276020-22276039 | None:intergenic | 50.0% | |
| GTCACCAACGGGAATCTTGA+CGG | - | chr7.3:22274103-22274122 | None:intergenic | 50.0% | |
| TATCCTTTCGGTGGCCACTA+TGG | - | chr7.3:22274589-22274608 | None:intergenic | 50.0% | |
| TGGCCCCTATCATTTACGTC+GGG | + | chr7.3:22276353-22276372 | MS.gene055929:intron | 50.0% | |
| TGTCTTCTCCTGACTGCAAG+GGG | + | chr7.3:22275768-22275787 | MS.gene055929:intron | 50.0% | |
| TTGAGAATGGCGGTGGAATG+TGG | - | chr7.3:22273881-22273900 | None:intergenic | 50.0% | |
| TTTCCGGGAAGAATTGTCGC+AGG | + | chr7.3:22273995-22274014 | MS.gene055929:CDS | 50.0% | |
| ! | ATTGGCCGCTTTGCAGATCT+AGG | + | chr7.3:22274924-22274943 | MS.gene055929:intron | 50.0% |
| !! | ATAGTGGGTGTGTGACTGTG+TGG | + | chr7.3:22276501-22276520 | MS.gene055929:intron | 50.0% |
| !!! | GAGGTTTTGGAGTCGGTTGA+CGG | + | chr7.3:22274051-22274070 | MS.gene055929:CDS | 50.0% |
| !!! | GTCATCGGAGGTTTTGGAGT+CGG | + | chr7.3:22274044-22274063 | MS.gene055929:CDS | 50.0% |
| AAACGCGGGGAAGCTAGAAC+GGG | - | chr7.3:22273950-22273969 | None:intergenic | 55.0% | |
| CAAACGCGGGGAAGCTAGAA+CGG | - | chr7.3:22273951-22273970 | None:intergenic | 55.0% | |
| GAATGGCGGTGGAATGTGGT+AGG | - | chr7.3:22273877-22273896 | None:intergenic | 55.0% | |
| GAATGTGGTAGGGCCATGGA+AGG | - | chr7.3:22273866-22273885 | None:intergenic | 55.0% | |
| GAGGCTTGGACTTGGAGAGT+AGG | - | chr7.3:22273915-22273934 | None:intergenic | 55.0% | |
| GTCTTCTCCTGACTGCAAGG+GGG | + | chr7.3:22275769-22275788 | MS.gene055929:intron | 55.0% | |
| TCGAAGGTTGAGAATGGCGG+TGG | - | chr7.3:22273888-22273907 | None:intergenic | 55.0% | |
| TGTCCTAGCACCACCTTCCA+TGG | + | chr7.3:22273850-22273869 | MS.gene055929:CDS | 55.0% | |
| !! | AGTGTCTCGGTGTTGGACAC+CGG | + | chr7.3:22274367-22274386 | MS.gene055929:intron | 55.0% |
| !! | GTTCTAGCTTCCCCGCGTTT+GGG | + | chr7.3:22273950-22273969 | MS.gene055929:CDS | 55.0% |
| !!! | GTTTTGGAGTCGGTTGACGG+CGG | + | chr7.3:22274054-22274073 | MS.gene055929:CDS | 55.0% |
| AACGCGGGGAAGCTAGAACG+GGG | - | chr7.3:22273949-22273968 | None:intergenic | 60.0% | |
| CCACCATAGTGGCCACCGAA+AGG | + | chr7.3:22274583-22274602 | MS.gene055929:intron | 60.0% | |
| CCTTTCGGTGGCCACTATGG+TGG | - | chr7.3:22274586-22274605 | None:intergenic | 60.0% | |
| GAACGGGGAGGGAAGATGAG+AGG | - | chr7.3:22273934-22273953 | None:intergenic | 60.0% | |
| GGCATACCTAGTGCGACCAG+CGG | - | chr7.3:22276720-22276739 | None:intergenic | 60.0% | |
| GGGAGGGAAGATGAGAGGCT+TGG | - | chr7.3:22273929-22273948 | None:intergenic | 60.0% | |
| GGTGGAATGTGGTAGGGCCA+TGG | - | chr7.3:22273870-22273889 | None:intergenic | 60.0% | |
| TGTGGTAGGGCCATGGAAGG+TGG | - | chr7.3:22273863-22273882 | None:intergenic | 60.0% | |
| TTTCTGCCGCTGGTCGCACT+AGG | + | chr7.3:22276711-22276730 | MS.gene055929:CDS | 60.0% | |
| !! | CGTTCTAGCTTCCCCGCGTT+TGG | + | chr7.3:22273949-22273968 | MS.gene055929:CDS | 60.0% |
| !!! | CAAGAGCGCTTTTCTGCCGC+TGG | + | chr7.3:22276701-22276720 | MS.gene055929:CDS | 60.0% |
| CGGGGAAGCTAGAACGGGGA+GGG | - | chr7.3:22273945-22273964 | None:intergenic | 65.0% | |
| GGGCCATGGAAGGTGGTGCT+AGG | - | chr7.3:22273856-22273875 | None:intergenic | 65.0% | |
| GCGGGGAAGCTAGAACGGGG+AGG | - | chr7.3:22273946-22273965 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22273841 | 22276838 | 22273841 | ID=MS.gene055929 |
| chr7.3 | mRNA | 22273841 | 22276838 | 22273841 | ID=MS.gene055929.t1;Parent=MS.gene055929 |
| chr7.3 | exon | 22273841 | 22274128 | 22273841 | ID=MS.gene055929.t1.exon1;Parent=MS.gene055929.t1 |
| chr7.3 | CDS | 22273841 | 22274128 | 22273841 | ID=cds.MS.gene055929.t1;Parent=MS.gene055929.t1 |
| chr7.3 | exon | 22275454 | 22275522 | 22275454 | ID=MS.gene055929.t1.exon2;Parent=MS.gene055929.t1 |
| chr7.3 | CDS | 22275454 | 22275522 | 22275454 | ID=cds.MS.gene055929.t1;Parent=MS.gene055929.t1 |
| chr7.3 | exon | 22276626 | 22276732 | 22276626 | ID=MS.gene055929.t1.exon3;Parent=MS.gene055929.t1 |
| chr7.3 | CDS | 22276626 | 22276732 | 22276626 | ID=cds.MS.gene055929.t1;Parent=MS.gene055929.t1 |
| chr7.3 | exon | 22276797 | 22276838 | 22276797 | ID=MS.gene055929.t1.exon4;Parent=MS.gene055929.t1 |
| chr7.3 | CDS | 22276797 | 22276838 | 22276797 | ID=cds.MS.gene055929.t1;Parent=MS.gene055929.t1 |
| Gene Sequence |
| Protein sequence |
